Multiple sequence alignment - TraesCS6B01G039400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G039400 chr6B 100.000 2488 0 0 2044 4531 23646532 23644045 0.000000e+00 4595.0
1 TraesCS6B01G039400 chr6B 100.000 1711 0 0 1 1711 23648575 23646865 0.000000e+00 3160.0
2 TraesCS6B01G039400 chr6D 89.611 1415 108 17 2454 3846 13092358 13093755 0.000000e+00 1762.0
3 TraesCS6B01G039400 chr6D 90.355 788 55 11 915 1699 13090932 13091701 0.000000e+00 1014.0
4 TraesCS6B01G039400 chr6D 92.580 566 25 2 3979 4530 13095854 13096416 0.000000e+00 797.0
5 TraesCS6B01G039400 chr6D 77.525 1010 151 52 2254 3246 27734731 27733781 5.160000e-149 538.0
6 TraesCS6B01G039400 chr6D 82.121 330 40 10 2124 2441 13091961 13092283 9.660000e-67 265.0
7 TraesCS6B01G039400 chr6D 83.128 243 30 9 526 766 13090536 13090769 1.280000e-50 211.0
8 TraesCS6B01G039400 chr6D 93.182 132 6 1 3851 3982 13095614 13095742 1.660000e-44 191.0
9 TraesCS6B01G039400 chr6D 92.424 66 5 0 1 66 13073663 13073728 1.340000e-15 95.3
10 TraesCS6B01G039400 chr6D 87.143 70 7 2 738 805 412759786 412759717 1.350000e-10 78.7
11 TraesCS6B01G039400 chr6A 93.299 985 50 10 2068 3052 14369962 14370930 0.000000e+00 1439.0
12 TraesCS6B01G039400 chr6A 92.818 905 45 8 3087 3982 14370931 14371824 0.000000e+00 1293.0
13 TraesCS6B01G039400 chr6A 89.989 909 74 9 809 1711 14369023 14369920 0.000000e+00 1158.0
14 TraesCS6B01G039400 chr6A 85.143 350 21 5 4165 4486 14372144 14372490 3.380000e-86 329.0
15 TraesCS6B01G039400 chr6A 94.472 199 11 0 3979 4177 14371928 14372126 1.580000e-79 307.0
16 TraesCS6B01G039400 chr6A 98.077 52 1 0 757 808 15468514 15468463 1.740000e-14 91.6
17 TraesCS6B01G039400 chr7B 79.686 1467 215 52 2242 3682 218538010 218539419 0.000000e+00 981.0
18 TraesCS6B01G039400 chr7B 79.310 145 26 3 2103 2244 218537834 218537977 1.040000e-16 99.0
19 TraesCS6B01G039400 chr7A 78.879 1463 216 56 2254 3682 254901915 254900512 0.000000e+00 904.0
20 TraesCS6B01G039400 chr7A 97.959 49 1 0 757 805 66643396 66643444 8.080000e-13 86.1
21 TraesCS6B01G039400 chr7D 79.485 1321 181 56 2242 3532 242777906 242779166 0.000000e+00 856.0
22 TraesCS6B01G039400 chr7D 80.548 365 61 10 2081 2442 404239352 404238995 5.780000e-69 272.0
23 TraesCS6B01G039400 chr7D 100.000 47 0 0 762 808 21264604 21264558 2.250000e-13 87.9
24 TraesCS6B01G039400 chr1B 80.501 359 63 6 2087 2442 572150279 572150633 7.470000e-68 268.0
25 TraesCS6B01G039400 chr4D 80.274 365 61 10 2081 2442 43407704 43408060 9.660000e-67 265.0
26 TraesCS6B01G039400 chr5D 78.371 356 66 9 2089 2442 108957787 108957441 2.120000e-53 220.0
27 TraesCS6B01G039400 chr5D 93.103 58 3 1 749 805 338307326 338307269 2.900000e-12 84.2
28 TraesCS6B01G039400 chr5D 91.803 61 3 2 750 808 447626917 447626977 2.900000e-12 84.2
29 TraesCS6B01G039400 chr3A 80.216 278 40 8 2081 2347 679754302 679754029 1.290000e-45 195.0
30 TraesCS6B01G039400 chr4A 79.577 284 46 10 2165 2444 678782278 678782003 4.630000e-45 193.0
31 TraesCS6B01G039400 chr5A 98.077 52 1 0 757 808 458337350 458337299 1.740000e-14 91.6
32 TraesCS6B01G039400 chr4B 98.000 50 1 0 759 808 342857165 342857116 2.250000e-13 87.9
33 TraesCS6B01G039400 chr3D 89.231 65 7 0 745 809 328514828 328514892 1.040000e-11 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G039400 chr6B 23644045 23648575 4530 True 3877.500000 4595 100.000000 1 4531 2 chr6B.!!$R1 4530
1 TraesCS6B01G039400 chr6D 13090536 13096416 5880 False 706.666667 1762 88.496167 526 4530 6 chr6D.!!$F2 4004
2 TraesCS6B01G039400 chr6D 27733781 27734731 950 True 538.000000 538 77.525000 2254 3246 1 chr6D.!!$R1 992
3 TraesCS6B01G039400 chr6A 14369023 14372490 3467 False 905.200000 1439 91.144200 809 4486 5 chr6A.!!$F1 3677
4 TraesCS6B01G039400 chr7B 218537834 218539419 1585 False 540.000000 981 79.498000 2103 3682 2 chr7B.!!$F1 1579
5 TraesCS6B01G039400 chr7A 254900512 254901915 1403 True 904.000000 904 78.879000 2254 3682 1 chr7A.!!$R1 1428
6 TraesCS6B01G039400 chr7D 242777906 242779166 1260 False 856.000000 856 79.485000 2242 3532 1 chr7D.!!$F1 1290

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
488 489 0.035458 CCTCCTTCCGCCACCATATC 59.965 60.0 0.00 0.00 0.00 1.63 F
628 629 0.179097 GAGGTCAGGCTCGGTGATTC 60.179 60.0 0.00 0.00 0.00 2.52 F
632 633 0.247460 TCAGGCTCGGTGATTCACTG 59.753 55.0 17.89 17.89 41.65 3.66 F
634 635 0.247736 AGGCTCGGTGATTCACTGAC 59.752 55.0 21.71 17.61 43.73 3.51 F
1024 1099 0.253160 TCAGCAGGTATTGGTCCCCT 60.253 55.0 0.00 0.00 34.69 4.79 F
1172 1247 0.384353 GCTCCGTTTCTGTTCAACGC 60.384 55.0 0.00 0.00 44.59 4.84 F
1565 1640 0.677731 TGGTACAGCCTGCAATCTGC 60.678 55.0 13.09 2.50 38.48 4.26 F
2768 3154 1.071605 GAAGCTGGTACAAGCAGTCG 58.928 55.0 24.16 0.00 44.96 4.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1360 1435 1.112315 AGCACATGCCGGACCAAAAA 61.112 50.000 5.05 0.00 43.38 1.94 R
1543 1618 1.283029 AGATTGCAGGCTGTACCACAT 59.717 47.619 17.16 1.41 43.14 3.21 R
2194 2433 3.817084 TGCAGAACACTGAATGGAAGAAG 59.183 43.478 0.00 0.00 33.94 2.85 R
2341 2626 4.513318 ACTCACTGAGCTTAGCTTTTGAAC 59.487 41.667 8.58 0.00 39.88 3.18 R
2951 3344 1.203287 TCAGCGAGACCAGTCAATGAG 59.797 52.381 0.00 0.00 0.00 2.90 R
3054 3458 5.674525 TCATCTCATACAACCCTGAATGTC 58.325 41.667 0.00 0.00 0.00 3.06 R
3294 3700 0.700564 AATCCAGCAGAAAGGGAGCA 59.299 50.000 0.00 0.00 33.47 4.26 R
3913 6187 0.252284 CCTGTGTAGAGGGGTGGTCT 60.252 60.000 0.00 0.00 0.00 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.805546 GAGAGCGCCCGTCATACA 59.194 61.111 2.29 0.00 0.00 2.29
18 19 1.141019 GAGAGCGCCCGTCATACAA 59.859 57.895 2.29 0.00 0.00 2.41
19 20 1.146358 GAGAGCGCCCGTCATACAAC 61.146 60.000 2.29 0.00 0.00 3.32
20 21 1.447140 GAGCGCCCGTCATACAACA 60.447 57.895 2.29 0.00 0.00 3.33
21 22 0.810031 GAGCGCCCGTCATACAACAT 60.810 55.000 2.29 0.00 0.00 2.71
22 23 1.089481 AGCGCCCGTCATACAACATG 61.089 55.000 2.29 0.00 0.00 3.21
23 24 1.366111 GCGCCCGTCATACAACATGT 61.366 55.000 0.00 0.00 0.00 3.21
24 25 0.373370 CGCCCGTCATACAACATGTG 59.627 55.000 0.00 0.00 0.00 3.21
25 26 0.732571 GCCCGTCATACAACATGTGG 59.267 55.000 0.00 0.00 0.00 4.17
26 27 0.732571 CCCGTCATACAACATGTGGC 59.267 55.000 0.00 0.00 0.00 5.01
27 28 0.373370 CCGTCATACAACATGTGGCG 59.627 55.000 0.00 0.00 46.10 5.69
28 29 0.373370 CGTCATACAACATGTGGCGG 59.627 55.000 0.00 0.00 43.16 6.13
29 30 1.448985 GTCATACAACATGTGGCGGT 58.551 50.000 0.00 0.00 0.00 5.68
30 31 1.130373 GTCATACAACATGTGGCGGTG 59.870 52.381 0.00 0.00 0.00 4.94
31 32 0.451383 CATACAACATGTGGCGGTGG 59.549 55.000 0.00 0.00 0.00 4.61
32 33 1.312371 ATACAACATGTGGCGGTGGC 61.312 55.000 0.00 0.00 38.90 5.01
33 34 2.404566 TACAACATGTGGCGGTGGCT 62.405 55.000 0.00 0.00 39.81 4.75
34 35 2.985282 AACATGTGGCGGTGGCTG 60.985 61.111 0.00 0.00 39.81 4.85
36 37 4.720902 CATGTGGCGGTGGCTGGA 62.721 66.667 0.00 0.00 39.81 3.86
37 38 4.722700 ATGTGGCGGTGGCTGGAC 62.723 66.667 0.00 0.00 39.81 4.02
52 53 1.304254 TGGACACACCATTTGACACG 58.696 50.000 0.00 0.00 44.64 4.49
53 54 0.040425 GGACACACCATTTGACACGC 60.040 55.000 0.00 0.00 38.79 5.34
54 55 0.944386 GACACACCATTTGACACGCT 59.056 50.000 0.00 0.00 0.00 5.07
55 56 0.944386 ACACACCATTTGACACGCTC 59.056 50.000 0.00 0.00 0.00 5.03
56 57 0.238289 CACACCATTTGACACGCTCC 59.762 55.000 0.00 0.00 0.00 4.70
57 58 0.108585 ACACCATTTGACACGCTCCT 59.891 50.000 0.00 0.00 0.00 3.69
58 59 1.346395 ACACCATTTGACACGCTCCTA 59.654 47.619 0.00 0.00 0.00 2.94
59 60 2.002586 CACCATTTGACACGCTCCTAG 58.997 52.381 0.00 0.00 0.00 3.02
60 61 1.066143 ACCATTTGACACGCTCCTAGG 60.066 52.381 0.82 0.82 0.00 3.02
61 62 1.656652 CATTTGACACGCTCCTAGGG 58.343 55.000 9.46 0.44 0.00 3.53
62 63 0.107654 ATTTGACACGCTCCTAGGGC 60.108 55.000 9.46 10.47 0.00 5.19
63 64 1.476845 TTTGACACGCTCCTAGGGCA 61.477 55.000 18.65 0.00 0.00 5.36
64 65 1.264749 TTGACACGCTCCTAGGGCAT 61.265 55.000 18.65 4.34 0.00 4.40
65 66 1.068250 GACACGCTCCTAGGGCATC 59.932 63.158 18.65 10.85 0.00 3.91
66 67 1.676678 GACACGCTCCTAGGGCATCA 61.677 60.000 18.65 0.00 0.00 3.07
67 68 1.264749 ACACGCTCCTAGGGCATCAA 61.265 55.000 18.65 0.00 0.00 2.57
68 69 0.107703 CACGCTCCTAGGGCATCAAA 60.108 55.000 18.65 0.00 0.00 2.69
69 70 0.618458 ACGCTCCTAGGGCATCAAAA 59.382 50.000 18.65 0.00 0.00 2.44
70 71 1.303309 CGCTCCTAGGGCATCAAAAG 58.697 55.000 18.65 4.61 0.00 2.27
71 72 1.407437 CGCTCCTAGGGCATCAAAAGT 60.407 52.381 18.65 0.00 0.00 2.66
72 73 2.019984 GCTCCTAGGGCATCAAAAGTG 58.980 52.381 9.46 0.00 0.00 3.16
73 74 2.356125 GCTCCTAGGGCATCAAAAGTGA 60.356 50.000 9.46 0.00 38.41 3.41
74 75 3.686691 GCTCCTAGGGCATCAAAAGTGAT 60.687 47.826 9.46 0.00 45.80 3.06
75 76 4.133078 CTCCTAGGGCATCAAAAGTGATC 58.867 47.826 9.46 0.00 42.88 2.92
76 77 3.117888 TCCTAGGGCATCAAAAGTGATCC 60.118 47.826 9.46 0.00 42.88 3.36
77 78 2.149973 AGGGCATCAAAAGTGATCCC 57.850 50.000 12.59 12.59 42.88 3.85
79 80 1.851304 GGCATCAAAAGTGATCCCCA 58.149 50.000 0.00 0.00 42.88 4.96
80 81 1.478105 GGCATCAAAAGTGATCCCCAC 59.522 52.381 0.00 0.00 42.88 4.61
87 88 2.901042 GTGATCCCCACGAGGTCC 59.099 66.667 0.00 0.00 35.86 4.46
88 89 2.365105 TGATCCCCACGAGGTCCC 60.365 66.667 0.00 0.00 0.00 4.46
89 90 3.162154 GATCCCCACGAGGTCCCC 61.162 72.222 0.00 0.00 0.00 4.81
90 91 4.817909 ATCCCCACGAGGTCCCCC 62.818 72.222 0.00 0.00 0.00 5.40
94 95 3.771160 CCACGAGGTCCCCCGAAG 61.771 72.222 8.11 1.30 35.12 3.79
95 96 2.995574 CACGAGGTCCCCCGAAGT 60.996 66.667 8.11 0.00 35.12 3.01
96 97 2.995574 ACGAGGTCCCCCGAAGTG 60.996 66.667 8.11 0.00 35.12 3.16
97 98 3.771160 CGAGGTCCCCCGAAGTGG 61.771 72.222 0.00 0.00 35.12 4.00
98 99 2.606826 GAGGTCCCCCGAAGTGGT 60.607 66.667 0.00 0.00 35.15 4.16
99 100 1.305549 GAGGTCCCCCGAAGTGGTA 60.306 63.158 0.00 0.00 35.15 3.25
100 101 0.906282 GAGGTCCCCCGAAGTGGTAA 60.906 60.000 0.00 0.00 35.15 2.85
101 102 1.196766 AGGTCCCCCGAAGTGGTAAC 61.197 60.000 0.00 0.00 35.15 2.50
102 103 1.297689 GTCCCCCGAAGTGGTAACC 59.702 63.158 0.00 0.00 35.15 2.85
103 104 1.159184 TCCCCCGAAGTGGTAACCT 59.841 57.895 0.00 0.00 35.15 3.50
104 105 0.906282 TCCCCCGAAGTGGTAACCTC 60.906 60.000 0.00 0.00 35.15 3.85
105 106 0.908180 CCCCCGAAGTGGTAACCTCT 60.908 60.000 0.00 0.00 35.15 3.69
106 107 0.249398 CCCCGAAGTGGTAACCTCTG 59.751 60.000 0.00 0.00 35.15 3.35
107 108 0.249398 CCCGAAGTGGTAACCTCTGG 59.751 60.000 0.00 0.00 35.15 3.86
108 109 0.974383 CCGAAGTGGTAACCTCTGGT 59.026 55.000 0.00 0.00 37.65 4.00
109 110 3.937968 CCCGAAGTGGTAACCTCTGGTT 61.938 54.545 7.18 7.18 41.43 3.67
110 111 2.564062 CCGAAGTGGTAACCTCTGGTTA 59.436 50.000 5.20 5.20 44.94 2.85
121 122 4.886496 ACCTCTGGTTAGTTTAGTGACC 57.114 45.455 0.00 0.00 27.29 4.02
122 123 4.228824 ACCTCTGGTTAGTTTAGTGACCA 58.771 43.478 1.79 1.79 39.72 4.02
123 124 4.844655 ACCTCTGGTTAGTTTAGTGACCAT 59.155 41.667 2.12 0.00 41.04 3.55
124 125 6.021030 ACCTCTGGTTAGTTTAGTGACCATA 58.979 40.000 2.12 0.00 41.04 2.74
125 126 6.672657 ACCTCTGGTTAGTTTAGTGACCATAT 59.327 38.462 2.12 0.00 41.04 1.78
126 127 6.986817 CCTCTGGTTAGTTTAGTGACCATATG 59.013 42.308 2.12 0.00 41.04 1.78
127 128 7.147724 CCTCTGGTTAGTTTAGTGACCATATGA 60.148 40.741 3.65 0.00 41.04 2.15
128 129 8.141298 TCTGGTTAGTTTAGTGACCATATGAA 57.859 34.615 3.65 0.00 41.04 2.57
129 130 8.258007 TCTGGTTAGTTTAGTGACCATATGAAG 58.742 37.037 3.65 0.00 41.04 3.02
130 131 7.913789 TGGTTAGTTTAGTGACCATATGAAGT 58.086 34.615 3.65 0.00 37.26 3.01
131 132 9.038072 TGGTTAGTTTAGTGACCATATGAAGTA 57.962 33.333 3.65 0.00 37.26 2.24
132 133 9.530633 GGTTAGTTTAGTGACCATATGAAGTAG 57.469 37.037 3.65 0.00 32.41 2.57
135 136 7.493367 AGTTTAGTGACCATATGAAGTAGAGC 58.507 38.462 3.65 0.00 0.00 4.09
136 137 4.576216 AGTGACCATATGAAGTAGAGCG 57.424 45.455 3.65 0.00 0.00 5.03
137 138 4.207955 AGTGACCATATGAAGTAGAGCGA 58.792 43.478 3.65 0.00 0.00 4.93
138 139 4.036971 AGTGACCATATGAAGTAGAGCGAC 59.963 45.833 3.65 0.00 0.00 5.19
139 140 4.036971 GTGACCATATGAAGTAGAGCGACT 59.963 45.833 3.65 0.00 0.00 4.18
140 141 5.238868 GTGACCATATGAAGTAGAGCGACTA 59.761 44.000 3.65 0.00 0.00 2.59
141 142 5.826208 TGACCATATGAAGTAGAGCGACTAA 59.174 40.000 3.65 0.00 32.49 2.24
142 143 6.320418 TGACCATATGAAGTAGAGCGACTAAA 59.680 38.462 3.65 0.00 32.49 1.85
143 144 7.014326 TGACCATATGAAGTAGAGCGACTAAAT 59.986 37.037 3.65 0.00 32.49 1.40
144 145 7.148641 ACCATATGAAGTAGAGCGACTAAATG 58.851 38.462 3.65 0.00 32.49 2.32
145 146 7.148641 CCATATGAAGTAGAGCGACTAAATGT 58.851 38.462 3.65 0.00 32.49 2.71
146 147 8.297426 CCATATGAAGTAGAGCGACTAAATGTA 58.703 37.037 3.65 0.00 32.49 2.29
147 148 9.847706 CATATGAAGTAGAGCGACTAAATGTAT 57.152 33.333 0.00 0.00 32.49 2.29
148 149 9.847706 ATATGAAGTAGAGCGACTAAATGTATG 57.152 33.333 0.00 0.00 32.49 2.39
149 150 7.329588 TGAAGTAGAGCGACTAAATGTATGA 57.670 36.000 0.00 0.00 32.49 2.15
150 151 7.768240 TGAAGTAGAGCGACTAAATGTATGAA 58.232 34.615 0.00 0.00 32.49 2.57
151 152 8.414003 TGAAGTAGAGCGACTAAATGTATGAAT 58.586 33.333 0.00 0.00 32.49 2.57
152 153 9.894783 GAAGTAGAGCGACTAAATGTATGAATA 57.105 33.333 0.00 0.00 32.49 1.75
153 154 9.680315 AAGTAGAGCGACTAAATGTATGAATAC 57.320 33.333 0.00 0.00 32.49 1.89
154 155 8.298140 AGTAGAGCGACTAAATGTATGAATACC 58.702 37.037 0.00 0.00 32.49 2.73
155 156 6.150318 AGAGCGACTAAATGTATGAATACCG 58.850 40.000 0.00 0.00 32.33 4.02
156 157 5.839621 AGCGACTAAATGTATGAATACCGT 58.160 37.500 0.00 0.00 32.33 4.83
157 158 6.973843 AGCGACTAAATGTATGAATACCGTA 58.026 36.000 0.00 0.00 32.33 4.02
158 159 7.600065 AGCGACTAAATGTATGAATACCGTAT 58.400 34.615 0.00 0.00 32.33 3.06
159 160 8.086522 AGCGACTAAATGTATGAATACCGTATT 58.913 33.333 3.32 3.32 32.33 1.89
160 161 8.706035 GCGACTAAATGTATGAATACCGTATTT 58.294 33.333 5.26 1.64 32.33 1.40
166 167 8.740123 AATGTATGAATACCGTATTTGAACCA 57.260 30.769 5.26 0.00 32.33 3.67
167 168 7.780008 TGTATGAATACCGTATTTGAACCAG 57.220 36.000 5.26 0.00 32.33 4.00
168 169 5.751243 ATGAATACCGTATTTGAACCAGC 57.249 39.130 5.26 0.00 0.00 4.85
169 170 4.580868 TGAATACCGTATTTGAACCAGCA 58.419 39.130 5.26 0.00 0.00 4.41
170 171 4.634004 TGAATACCGTATTTGAACCAGCAG 59.366 41.667 5.26 0.00 0.00 4.24
171 172 1.821216 ACCGTATTTGAACCAGCAGG 58.179 50.000 0.00 0.00 42.21 4.85
172 173 1.094785 CCGTATTTGAACCAGCAGGG 58.905 55.000 0.00 0.00 44.81 4.45
173 174 0.451783 CGTATTTGAACCAGCAGGGC 59.548 55.000 0.00 0.00 42.05 5.19
174 175 1.544724 GTATTTGAACCAGCAGGGCA 58.455 50.000 0.00 0.00 42.05 5.36
175 176 1.892474 GTATTTGAACCAGCAGGGCAA 59.108 47.619 0.00 0.65 42.05 4.52
176 177 0.971386 ATTTGAACCAGCAGGGCAAG 59.029 50.000 0.00 0.00 42.05 4.01
177 178 0.396974 TTTGAACCAGCAGGGCAAGT 60.397 50.000 0.00 0.00 42.05 3.16
178 179 0.396974 TTGAACCAGCAGGGCAAGTT 60.397 50.000 0.00 0.00 42.05 2.66
179 180 0.396974 TGAACCAGCAGGGCAAGTTT 60.397 50.000 0.00 0.00 42.05 2.66
180 181 1.133637 TGAACCAGCAGGGCAAGTTTA 60.134 47.619 0.00 0.00 42.05 2.01
181 182 1.541588 GAACCAGCAGGGCAAGTTTAG 59.458 52.381 0.00 0.00 42.05 1.85
182 183 0.478507 ACCAGCAGGGCAAGTTTAGT 59.521 50.000 0.00 0.00 42.05 2.24
183 184 0.883833 CCAGCAGGGCAAGTTTAGTG 59.116 55.000 0.00 0.00 0.00 2.74
184 185 1.545428 CCAGCAGGGCAAGTTTAGTGA 60.545 52.381 0.00 0.00 0.00 3.41
185 186 1.537202 CAGCAGGGCAAGTTTAGTGAC 59.463 52.381 0.00 0.00 0.00 3.67
186 187 0.881796 GCAGGGCAAGTTTAGTGACC 59.118 55.000 0.00 0.00 45.49 4.02
188 189 3.317449 GGGCAAGTTTAGTGACCGT 57.683 52.632 0.00 0.00 33.46 4.83
189 190 2.460757 GGGCAAGTTTAGTGACCGTA 57.539 50.000 0.00 0.00 33.46 4.02
190 191 2.981898 GGGCAAGTTTAGTGACCGTAT 58.018 47.619 0.00 0.00 33.46 3.06
191 192 3.340928 GGGCAAGTTTAGTGACCGTATT 58.659 45.455 0.00 0.00 33.46 1.89
192 193 3.754850 GGGCAAGTTTAGTGACCGTATTT 59.245 43.478 0.00 0.00 33.46 1.40
193 194 4.216902 GGGCAAGTTTAGTGACCGTATTTT 59.783 41.667 0.00 0.00 33.46 1.82
194 195 5.412286 GGGCAAGTTTAGTGACCGTATTTTA 59.588 40.000 0.00 0.00 33.46 1.52
195 196 6.072563 GGGCAAGTTTAGTGACCGTATTTTAA 60.073 38.462 0.00 0.00 33.46 1.52
196 197 7.019418 GGCAAGTTTAGTGACCGTATTTTAAG 58.981 38.462 0.00 0.00 0.00 1.85
197 198 7.308169 GGCAAGTTTAGTGACCGTATTTTAAGT 60.308 37.037 0.00 0.00 0.00 2.24
198 199 8.711457 GCAAGTTTAGTGACCGTATTTTAAGTA 58.289 33.333 0.00 0.00 0.00 2.24
220 221 9.765295 AAGTATTTTGAAGTAGTAGAGGGACTA 57.235 33.333 0.00 0.00 41.55 2.59
221 222 9.765295 AGTATTTTGAAGTAGTAGAGGGACTAA 57.235 33.333 0.00 0.00 41.55 2.24
225 226 9.720769 TTTTGAAGTAGTAGAGGGACTAAAATG 57.279 33.333 0.00 0.00 41.55 2.32
226 227 8.660295 TTGAAGTAGTAGAGGGACTAAAATGA 57.340 34.615 0.00 0.00 41.55 2.57
227 228 8.294954 TGAAGTAGTAGAGGGACTAAAATGAG 57.705 38.462 0.00 0.00 41.55 2.90
228 229 7.894364 TGAAGTAGTAGAGGGACTAAAATGAGT 59.106 37.037 0.00 0.00 41.55 3.41
229 230 8.667592 AAGTAGTAGAGGGACTAAAATGAGTT 57.332 34.615 0.00 0.00 41.55 3.01
230 231 9.765295 AAGTAGTAGAGGGACTAAAATGAGTTA 57.235 33.333 0.00 0.00 41.55 2.24
231 232 9.187996 AGTAGTAGAGGGACTAAAATGAGTTAC 57.812 37.037 0.00 0.00 41.55 2.50
232 233 8.964772 GTAGTAGAGGGACTAAAATGAGTTACA 58.035 37.037 0.00 0.00 41.55 2.41
233 234 8.068892 AGTAGAGGGACTAAAATGAGTTACAG 57.931 38.462 0.00 0.00 41.55 2.74
234 235 7.894364 AGTAGAGGGACTAAAATGAGTTACAGA 59.106 37.037 0.00 0.00 41.55 3.41
235 236 7.176589 AGAGGGACTAAAATGAGTTACAGAG 57.823 40.000 0.00 0.00 41.55 3.35
236 237 5.735766 AGGGACTAAAATGAGTTACAGAGC 58.264 41.667 0.00 0.00 36.02 4.09
237 238 5.248477 AGGGACTAAAATGAGTTACAGAGCA 59.752 40.000 0.00 0.00 36.02 4.26
238 239 5.938125 GGGACTAAAATGAGTTACAGAGCAA 59.062 40.000 0.00 0.00 0.00 3.91
239 240 6.599638 GGGACTAAAATGAGTTACAGAGCAAT 59.400 38.462 0.00 0.00 0.00 3.56
240 241 7.121315 GGGACTAAAATGAGTTACAGAGCAATT 59.879 37.037 0.00 0.00 0.00 2.32
241 242 8.515414 GGACTAAAATGAGTTACAGAGCAATTT 58.485 33.333 0.00 0.00 0.00 1.82
244 245 9.495754 CTAAAATGAGTTACAGAGCAATTTAGC 57.504 33.333 0.00 0.00 0.00 3.09
313 314 0.036294 AAACTCTTCACCGCCTAGGC 60.036 55.000 24.75 24.75 46.52 3.93
314 315 0.905337 AACTCTTCACCGCCTAGGCT 60.905 55.000 30.55 11.23 46.52 4.58
315 316 1.324005 ACTCTTCACCGCCTAGGCTC 61.324 60.000 30.55 4.11 46.52 4.70
316 317 2.105128 CTTCACCGCCTAGGCTCG 59.895 66.667 30.55 21.96 46.52 5.03
317 318 2.678934 TTCACCGCCTAGGCTCGT 60.679 61.111 30.55 22.62 46.52 4.18
318 319 2.615262 CTTCACCGCCTAGGCTCGTC 62.615 65.000 30.55 2.51 46.52 4.20
319 320 4.554363 CACCGCCTAGGCTCGTCG 62.554 72.222 30.55 14.94 46.52 5.12
395 396 4.452733 GCAGGACCCGCGCTAACT 62.453 66.667 5.56 0.00 0.00 2.24
396 397 2.509336 CAGGACCCGCGCTAACTG 60.509 66.667 5.56 2.33 0.00 3.16
397 398 3.771160 AGGACCCGCGCTAACTGG 61.771 66.667 5.56 0.00 0.00 4.00
427 428 4.292178 CGCCGAGGATCTGGCCTC 62.292 72.222 3.32 0.00 46.90 4.70
432 433 3.882825 AGGATCTGGCCTCATCCG 58.117 61.111 21.43 0.00 43.17 4.18
433 434 2.031768 GGATCTGGCCTCATCCGC 59.968 66.667 15.46 0.00 29.40 5.54
441 442 4.147449 CCTCATCCGCCTCGCACA 62.147 66.667 0.00 0.00 0.00 4.57
442 443 2.887568 CTCATCCGCCTCGCACAC 60.888 66.667 0.00 0.00 0.00 3.82
443 444 4.451150 TCATCCGCCTCGCACACC 62.451 66.667 0.00 0.00 0.00 4.16
457 458 4.715523 CACCCCACCCGCATCGTT 62.716 66.667 0.00 0.00 0.00 3.85
458 459 4.404098 ACCCCACCCGCATCGTTC 62.404 66.667 0.00 0.00 0.00 3.95
463 464 4.690719 ACCCGCATCGTTCGCCAA 62.691 61.111 0.00 0.00 0.00 4.52
464 465 4.160635 CCCGCATCGTTCGCCAAC 62.161 66.667 0.00 0.00 0.00 3.77
465 466 4.160635 CCGCATCGTTCGCCAACC 62.161 66.667 0.00 0.00 0.00 3.77
466 467 4.499023 CGCATCGTTCGCCAACCG 62.499 66.667 0.00 0.00 38.61 4.44
467 468 4.811761 GCATCGTTCGCCAACCGC 62.812 66.667 0.00 0.00 36.73 5.68
468 469 3.118454 CATCGTTCGCCAACCGCT 61.118 61.111 0.00 0.00 36.73 5.52
469 470 2.813908 ATCGTTCGCCAACCGCTC 60.814 61.111 0.00 0.00 36.73 5.03
472 473 3.119096 GTTCGCCAACCGCTCCTC 61.119 66.667 0.00 0.00 36.73 3.71
473 474 4.388499 TTCGCCAACCGCTCCTCC 62.388 66.667 0.00 0.00 36.73 4.30
475 476 4.394712 CGCCAACCGCTCCTCCTT 62.395 66.667 0.00 0.00 34.21 3.36
476 477 2.436824 GCCAACCGCTCCTCCTTC 60.437 66.667 0.00 0.00 0.00 3.46
477 478 2.269241 CCAACCGCTCCTCCTTCC 59.731 66.667 0.00 0.00 0.00 3.46
478 479 2.125512 CAACCGCTCCTCCTTCCG 60.126 66.667 0.00 0.00 0.00 4.30
479 480 4.083862 AACCGCTCCTCCTTCCGC 62.084 66.667 0.00 0.00 0.00 5.54
482 483 4.821589 CGCTCCTCCTTCCGCCAC 62.822 72.222 0.00 0.00 0.00 5.01
483 484 4.475135 GCTCCTCCTTCCGCCACC 62.475 72.222 0.00 0.00 0.00 4.61
484 485 3.003173 CTCCTCCTTCCGCCACCA 61.003 66.667 0.00 0.00 0.00 4.17
485 486 2.285368 TCCTCCTTCCGCCACCAT 60.285 61.111 0.00 0.00 0.00 3.55
486 487 1.002403 TCCTCCTTCCGCCACCATA 59.998 57.895 0.00 0.00 0.00 2.74
487 488 0.399949 TCCTCCTTCCGCCACCATAT 60.400 55.000 0.00 0.00 0.00 1.78
488 489 0.035458 CCTCCTTCCGCCACCATATC 59.965 60.000 0.00 0.00 0.00 1.63
489 490 0.758734 CTCCTTCCGCCACCATATCA 59.241 55.000 0.00 0.00 0.00 2.15
490 491 1.140852 CTCCTTCCGCCACCATATCAA 59.859 52.381 0.00 0.00 0.00 2.57
491 492 1.774254 TCCTTCCGCCACCATATCAAT 59.226 47.619 0.00 0.00 0.00 2.57
492 493 1.881973 CCTTCCGCCACCATATCAATG 59.118 52.381 0.00 0.00 0.00 2.82
493 494 2.575532 CTTCCGCCACCATATCAATGT 58.424 47.619 0.00 0.00 0.00 2.71
494 495 1.965935 TCCGCCACCATATCAATGTG 58.034 50.000 0.00 0.00 0.00 3.21
495 496 1.488393 TCCGCCACCATATCAATGTGA 59.512 47.619 0.00 0.00 0.00 3.58
496 497 1.603802 CCGCCACCATATCAATGTGAC 59.396 52.381 0.00 0.00 0.00 3.67
497 498 1.261354 CGCCACCATATCAATGTGACG 59.739 52.381 0.00 0.00 0.00 4.35
498 499 1.603802 GCCACCATATCAATGTGACGG 59.396 52.381 0.00 0.00 0.00 4.79
499 500 2.221169 CCACCATATCAATGTGACGGG 58.779 52.381 0.00 0.00 0.00 5.28
500 501 2.158827 CCACCATATCAATGTGACGGGA 60.159 50.000 0.00 0.00 0.00 5.14
501 502 3.496692 CCACCATATCAATGTGACGGGAT 60.497 47.826 0.00 0.00 0.00 3.85
502 503 4.262851 CCACCATATCAATGTGACGGGATA 60.263 45.833 0.00 0.00 0.00 2.59
503 504 4.931601 CACCATATCAATGTGACGGGATAG 59.068 45.833 0.00 0.00 0.00 2.08
504 505 4.020218 ACCATATCAATGTGACGGGATAGG 60.020 45.833 0.00 0.00 0.00 2.57
505 506 4.507710 CATATCAATGTGACGGGATAGGG 58.492 47.826 0.00 0.00 0.00 3.53
506 507 0.468226 TCAATGTGACGGGATAGGGC 59.532 55.000 0.00 0.00 0.00 5.19
507 508 0.880278 CAATGTGACGGGATAGGGCG 60.880 60.000 0.00 0.00 0.00 6.13
508 509 2.040009 AATGTGACGGGATAGGGCGG 62.040 60.000 0.00 0.00 0.00 6.13
509 510 2.836360 GTGACGGGATAGGGCGGA 60.836 66.667 0.00 0.00 0.00 5.54
510 511 2.836360 TGACGGGATAGGGCGGAC 60.836 66.667 0.00 0.00 0.00 4.79
511 512 3.974757 GACGGGATAGGGCGGACG 61.975 72.222 0.00 0.00 0.00 4.79
512 513 4.511246 ACGGGATAGGGCGGACGA 62.511 66.667 0.00 0.00 0.00 4.20
513 514 3.671411 CGGGATAGGGCGGACGAG 61.671 72.222 0.00 0.00 0.00 4.18
514 515 2.203451 GGGATAGGGCGGACGAGA 60.203 66.667 0.00 0.00 0.00 4.04
515 516 2.269529 GGGATAGGGCGGACGAGAG 61.270 68.421 0.00 0.00 0.00 3.20
516 517 2.646143 GATAGGGCGGACGAGAGC 59.354 66.667 0.00 0.00 0.00 4.09
517 518 2.123854 ATAGGGCGGACGAGAGCA 60.124 61.111 0.00 0.00 34.54 4.26
518 519 2.136196 GATAGGGCGGACGAGAGCAG 62.136 65.000 0.00 0.00 34.54 4.24
547 548 3.521796 GCTTTGGCGGGCATCTCC 61.522 66.667 4.64 0.00 0.00 3.71
559 560 2.519780 ATCTCCCGTCTCCGAGCC 60.520 66.667 0.00 0.00 35.63 4.70
612 613 3.181503 CGAATCCATTTTGCAGTGAGAGG 60.182 47.826 0.00 0.00 0.00 3.69
613 614 2.957402 TCCATTTTGCAGTGAGAGGT 57.043 45.000 0.00 0.00 0.00 3.85
614 615 2.783135 TCCATTTTGCAGTGAGAGGTC 58.217 47.619 0.00 0.00 0.00 3.85
615 616 2.106338 TCCATTTTGCAGTGAGAGGTCA 59.894 45.455 0.00 0.00 0.00 4.02
616 617 2.486982 CCATTTTGCAGTGAGAGGTCAG 59.513 50.000 0.00 0.00 31.53 3.51
617 618 2.260844 TTTTGCAGTGAGAGGTCAGG 57.739 50.000 0.00 0.00 31.53 3.86
618 619 0.250467 TTTGCAGTGAGAGGTCAGGC 60.250 55.000 0.00 0.00 35.61 4.85
619 620 1.123861 TTGCAGTGAGAGGTCAGGCT 61.124 55.000 0.00 0.00 35.91 4.58
620 621 1.217779 GCAGTGAGAGGTCAGGCTC 59.782 63.158 0.00 0.00 33.37 4.70
621 622 1.510383 CAGTGAGAGGTCAGGCTCG 59.490 63.158 0.00 0.00 33.89 5.03
622 623 1.680651 AGTGAGAGGTCAGGCTCGG 60.681 63.158 0.00 0.00 33.89 4.63
623 624 1.979693 GTGAGAGGTCAGGCTCGGT 60.980 63.158 0.00 0.00 33.89 4.69
624 625 1.979155 TGAGAGGTCAGGCTCGGTG 60.979 63.158 0.00 0.00 33.89 4.94
625 626 1.679305 GAGAGGTCAGGCTCGGTGA 60.679 63.158 0.00 0.00 0.00 4.02
626 627 1.000993 AGAGGTCAGGCTCGGTGAT 59.999 57.895 0.00 0.00 0.00 3.06
627 628 0.616111 AGAGGTCAGGCTCGGTGATT 60.616 55.000 0.00 0.00 0.00 2.57
628 629 0.179097 GAGGTCAGGCTCGGTGATTC 60.179 60.000 0.00 0.00 0.00 2.52
629 630 0.904865 AGGTCAGGCTCGGTGATTCA 60.905 55.000 0.00 0.00 0.00 2.57
630 631 0.741221 GGTCAGGCTCGGTGATTCAC 60.741 60.000 8.34 8.34 0.00 3.18
631 632 0.247736 GTCAGGCTCGGTGATTCACT 59.752 55.000 16.02 0.00 34.40 3.41
632 633 0.247460 TCAGGCTCGGTGATTCACTG 59.753 55.000 17.89 17.89 41.65 3.66
633 634 0.247460 CAGGCTCGGTGATTCACTGA 59.753 55.000 23.48 23.48 45.99 3.41
634 635 0.247736 AGGCTCGGTGATTCACTGAC 59.752 55.000 21.71 17.61 43.73 3.51
635 636 0.247736 GGCTCGGTGATTCACTGACT 59.752 55.000 21.71 0.00 43.73 3.41
636 637 1.354040 GCTCGGTGATTCACTGACTG 58.646 55.000 21.71 15.09 43.73 3.51
637 638 1.067565 GCTCGGTGATTCACTGACTGA 60.068 52.381 21.71 4.67 43.73 3.41
638 639 2.610479 GCTCGGTGATTCACTGACTGAA 60.610 50.000 21.71 4.34 43.73 3.02
639 640 2.989840 CTCGGTGATTCACTGACTGAAC 59.010 50.000 21.71 0.52 43.73 3.18
640 641 2.628178 TCGGTGATTCACTGACTGAACT 59.372 45.455 21.71 0.00 43.73 3.01
641 642 3.824443 TCGGTGATTCACTGACTGAACTA 59.176 43.478 21.71 0.36 43.73 2.24
642 643 4.082733 TCGGTGATTCACTGACTGAACTAG 60.083 45.833 21.71 0.00 43.73 2.57
643 644 3.929610 GGTGATTCACTGACTGAACTAGC 59.070 47.826 16.02 0.00 41.87 3.42
644 645 4.322349 GGTGATTCACTGACTGAACTAGCT 60.322 45.833 16.02 0.00 41.87 3.32
645 646 5.233988 GTGATTCACTGACTGAACTAGCTT 58.766 41.667 9.59 0.00 41.87 3.74
650 651 5.529791 TCACTGACTGAACTAGCTTGTTAC 58.470 41.667 13.60 8.20 0.00 2.50
653 654 6.090088 CACTGACTGAACTAGCTTGTTACATC 59.910 42.308 13.60 11.10 0.00 3.06
663 664 6.989169 ACTAGCTTGTTACATCCATCAGATTC 59.011 38.462 0.00 0.00 30.59 2.52
664 665 5.748402 AGCTTGTTACATCCATCAGATTCA 58.252 37.500 0.00 0.00 30.59 2.57
673 701 7.959658 ACATCCATCAGATTCATTGGTTAAA 57.040 32.000 0.00 0.00 30.59 1.52
681 709 6.038356 CAGATTCATTGGTTAAATCAGTGGC 58.962 40.000 0.00 0.00 32.92 5.01
703 731 4.024218 GCTGGATTCAGATGTGCAAGATAC 60.024 45.833 4.75 0.00 43.49 2.24
748 776 6.128445 CGTATCTGAAGAACTTTGCATCAAGT 60.128 38.462 0.00 0.00 0.00 3.16
749 777 5.679734 TCTGAAGAACTTTGCATCAAGTC 57.320 39.130 4.30 0.00 0.00 3.01
754 782 6.936335 TGAAGAACTTTGCATCAAGTCTCATA 59.064 34.615 4.30 0.00 0.00 2.15
757 785 6.712095 AGAACTTTGCATCAAGTCTCATACAA 59.288 34.615 4.30 0.00 0.00 2.41
758 786 6.492007 ACTTTGCATCAAGTCTCATACAAG 57.508 37.500 0.00 0.00 0.00 3.16
766 794 7.201478 GCATCAAGTCTCATACAAGTGTTCTAC 60.201 40.741 0.00 0.00 0.00 2.59
768 796 7.594714 TCAAGTCTCATACAAGTGTTCTACTC 58.405 38.462 0.00 0.00 39.18 2.59
769 797 6.518208 AGTCTCATACAAGTGTTCTACTCC 57.482 41.667 0.00 0.00 39.18 3.85
770 798 5.419471 AGTCTCATACAAGTGTTCTACTCCC 59.581 44.000 0.00 0.00 39.18 4.30
772 800 5.652891 TCTCATACAAGTGTTCTACTCCCTC 59.347 44.000 0.00 0.00 39.18 4.30
773 801 4.710375 TCATACAAGTGTTCTACTCCCTCC 59.290 45.833 0.00 0.00 39.18 4.30
774 802 1.893801 ACAAGTGTTCTACTCCCTCCG 59.106 52.381 0.00 0.00 39.18 4.63
775 803 1.893801 CAAGTGTTCTACTCCCTCCGT 59.106 52.381 0.00 0.00 39.18 4.69
776 804 1.836802 AGTGTTCTACTCCCTCCGTC 58.163 55.000 0.00 0.00 33.17 4.79
777 805 0.816373 GTGTTCTACTCCCTCCGTCC 59.184 60.000 0.00 0.00 0.00 4.79
778 806 0.324091 TGTTCTACTCCCTCCGTCCC 60.324 60.000 0.00 0.00 0.00 4.46
779 807 0.324091 GTTCTACTCCCTCCGTCCCA 60.324 60.000 0.00 0.00 0.00 4.37
781 809 1.526315 TCTACTCCCTCCGTCCCATA 58.474 55.000 0.00 0.00 0.00 2.74
782 810 1.854939 TCTACTCCCTCCGTCCCATAA 59.145 52.381 0.00 0.00 0.00 1.90
784 812 3.659195 TCTACTCCCTCCGTCCCATAATA 59.341 47.826 0.00 0.00 0.00 0.98
785 813 3.562108 ACTCCCTCCGTCCCATAATAT 57.438 47.619 0.00 0.00 0.00 1.28
786 814 4.687262 ACTCCCTCCGTCCCATAATATA 57.313 45.455 0.00 0.00 0.00 0.86
787 815 5.019657 ACTCCCTCCGTCCCATAATATAA 57.980 43.478 0.00 0.00 0.00 0.98
789 817 5.222484 ACTCCCTCCGTCCCATAATATAAGA 60.222 44.000 0.00 0.00 0.00 2.10
790 818 5.657446 TCCCTCCGTCCCATAATATAAGAA 58.343 41.667 0.00 0.00 0.00 2.52
791 819 5.482878 TCCCTCCGTCCCATAATATAAGAAC 59.517 44.000 0.00 0.00 0.00 3.01
792 820 5.408356 CCTCCGTCCCATAATATAAGAACG 58.592 45.833 0.00 0.00 0.00 3.95
795 823 6.819284 TCCGTCCCATAATATAAGAACGTTT 58.181 36.000 0.46 0.00 0.00 3.60
796 824 7.274447 TCCGTCCCATAATATAAGAACGTTTT 58.726 34.615 0.46 0.00 0.00 2.43
797 825 7.769970 TCCGTCCCATAATATAAGAACGTTTTT 59.230 33.333 9.22 9.22 0.00 1.94
799 827 8.605746 CGTCCCATAATATAAGAACGTTTTTGA 58.394 33.333 13.87 2.81 0.00 2.69
800 828 9.712359 GTCCCATAATATAAGAACGTTTTTGAC 57.288 33.333 13.87 5.89 0.00 3.18
801 829 9.451002 TCCCATAATATAAGAACGTTTTTGACA 57.549 29.630 13.87 0.01 0.00 3.58
802 830 9.498307 CCCATAATATAAGAACGTTTTTGACAC 57.502 33.333 13.87 0.00 0.00 3.67
837 905 1.707427 AGTGCCTGAACTCCATTTCCT 59.293 47.619 0.00 0.00 0.00 3.36
846 914 5.005740 TGAACTCCATTTCCTCACAATCTG 58.994 41.667 0.00 0.00 0.00 2.90
849 917 3.689347 TCCATTTCCTCACAATCTGGTG 58.311 45.455 0.00 0.00 40.16 4.17
855 929 1.404717 CCTCACAATCTGGTGGTCTCG 60.405 57.143 0.00 0.00 39.27 4.04
881 955 1.336702 GCTGGTCTGAGTGTCTGACTG 60.337 57.143 9.51 7.90 42.62 3.51
945 1019 8.411683 AGAAGCCAGAATAGATTTGCTTAAATG 58.588 33.333 0.00 0.00 39.01 2.32
959 1034 9.667989 ATTTGCTTAAATGTGAAATTTGCTTTC 57.332 25.926 0.00 0.00 43.05 2.62
986 1061 6.349300 CCCTCTGTATATGGTGTAATATGGC 58.651 44.000 0.00 0.00 0.00 4.40
987 1062 6.349300 CCTCTGTATATGGTGTAATATGGCC 58.651 44.000 0.00 0.00 0.00 5.36
991 1066 4.934797 ATATGGTGTAATATGGCCTGCT 57.065 40.909 3.32 0.00 0.00 4.24
994 1069 1.421646 GGTGTAATATGGCCTGCTCCT 59.578 52.381 3.32 0.00 0.00 3.69
996 1071 3.142174 GTGTAATATGGCCTGCTCCTTC 58.858 50.000 3.32 0.00 0.00 3.46
1020 1095 5.841957 AAATGATTCAGCAGGTATTGGTC 57.158 39.130 0.00 0.00 34.69 4.02
1021 1096 3.281727 TGATTCAGCAGGTATTGGTCC 57.718 47.619 0.00 0.00 34.69 4.46
1022 1097 2.092429 TGATTCAGCAGGTATTGGTCCC 60.092 50.000 0.00 0.00 34.69 4.46
1024 1099 0.253160 TCAGCAGGTATTGGTCCCCT 60.253 55.000 0.00 0.00 34.69 4.79
1043 1118 2.422479 CCTTGATCATGGTGTTCAGCAG 59.578 50.000 17.56 0.00 29.02 4.24
1117 1192 1.669999 GGCCAAGCTTGCCCATGTAG 61.670 60.000 21.18 6.17 43.33 2.74
1172 1247 0.384353 GCTCCGTTTCTGTTCAACGC 60.384 55.000 0.00 0.00 44.59 4.84
1277 1352 9.550406 AAAATGAATGTGATGAAAATTCAGTGT 57.450 25.926 1.98 0.00 42.03 3.55
1406 1481 0.987294 ACAGCCTCCAGTTGCAGTAT 59.013 50.000 0.00 0.00 0.00 2.12
1489 1564 3.610911 CAAGGTACTCAGATGGGTTTCC 58.389 50.000 0.00 0.00 38.49 3.13
1505 1580 2.347697 TTCCGTGTTCTCAGATGACG 57.652 50.000 0.00 0.00 0.00 4.35
1530 1605 7.148820 CGTAGTTTTGTATGCTTTTTGGGAATG 60.149 37.037 0.00 0.00 0.00 2.67
1543 1618 9.213799 GCTTTTTGGGAATGTTAATATGTTGAA 57.786 29.630 0.00 0.00 0.00 2.69
1565 1640 0.677731 TGGTACAGCCTGCAATCTGC 60.678 55.000 13.09 2.50 38.48 4.26
1589 1664 3.420893 TCCAGCTAACATTTGTTGAGGG 58.579 45.455 6.21 3.32 38.90 4.30
1598 1673 4.877773 ACATTTGTTGAGGGCCCATAATA 58.122 39.130 27.56 13.97 0.00 0.98
1609 1684 9.836179 TTGAGGGCCCATAATATTACAAATAAT 57.164 29.630 27.56 0.00 35.16 1.28
1638 1713 5.833131 AGGAACTCCTTAATTTCAACAGCAA 59.167 36.000 0.00 0.00 46.09 3.91
2119 2195 8.286191 AGGAAACTATTCATGAAAATCTGGAC 57.714 34.615 13.09 0.41 40.61 4.02
2194 2433 7.606456 TGAGGTTCAGAGTATGTTTTTATGACC 59.394 37.037 0.00 0.00 0.00 4.02
2210 2449 4.647564 ATGACCTTCTTCCATTCAGTGT 57.352 40.909 0.00 0.00 0.00 3.55
2307 2588 3.104512 TGTATTTCCCCATGACGAGACT 58.895 45.455 0.00 0.00 0.00 3.24
2323 2604 7.772166 TGACGAGACTATGTTTATTCATGAGT 58.228 34.615 0.00 0.00 0.00 3.41
2324 2605 8.899771 TGACGAGACTATGTTTATTCATGAGTA 58.100 33.333 0.00 0.00 0.00 2.59
2325 2606 9.900710 GACGAGACTATGTTTATTCATGAGTAT 57.099 33.333 0.00 0.00 0.00 2.12
2341 2626 6.830324 TCATGAGTATTTTCTTGATTCAGGGG 59.170 38.462 0.00 0.00 0.00 4.79
2420 2705 4.503741 TGCTGCTTCAGTGGTATTTTTC 57.496 40.909 0.00 0.00 33.43 2.29
2426 2711 7.148171 GCTGCTTCAGTGGTATTTTTCTTATCT 60.148 37.037 0.00 0.00 33.43 1.98
2565 2940 5.070180 TGGGATGCAGACAGAAAATGAAAAA 59.930 36.000 0.00 0.00 0.00 1.94
2768 3154 1.071605 GAAGCTGGTACAAGCAGTCG 58.928 55.000 24.16 0.00 44.96 4.18
2772 3158 1.673033 GCTGGTACAAGCAGTCGTGAT 60.673 52.381 17.77 0.00 44.96 3.06
2773 3159 2.416836 GCTGGTACAAGCAGTCGTGATA 60.417 50.000 17.77 0.00 44.96 2.15
2774 3160 3.439293 CTGGTACAAGCAGTCGTGATAG 58.561 50.000 0.00 0.00 38.80 2.08
2775 3161 3.086282 TGGTACAAGCAGTCGTGATAGA 58.914 45.455 0.00 0.00 31.92 1.98
2776 3162 3.508402 TGGTACAAGCAGTCGTGATAGAA 59.492 43.478 0.00 0.00 31.92 2.10
2777 3163 3.858238 GGTACAAGCAGTCGTGATAGAAC 59.142 47.826 0.00 0.00 0.00 3.01
2783 3169 5.493133 AGCAGTCGTGATAGAACTAGAAG 57.507 43.478 0.00 0.00 0.00 2.85
2905 3298 2.168728 GACCCGAGAATCTGGCTTAGTT 59.831 50.000 0.00 0.00 44.18 2.24
2976 3369 2.688507 TGACTGGTCTCGCTGATTTTC 58.311 47.619 2.38 0.00 0.00 2.29
2984 3377 4.433615 GTCTCGCTGATTTTCCTGTGATA 58.566 43.478 0.00 0.00 0.00 2.15
2985 3378 4.505922 GTCTCGCTGATTTTCCTGTGATAG 59.494 45.833 0.00 0.00 0.00 2.08
3054 3458 4.782019 TGTTTTAAGGCCTAAGCATGTG 57.218 40.909 5.16 0.00 42.56 3.21
3070 3474 3.696051 GCATGTGACATTCAGGGTTGTAT 59.304 43.478 0.00 0.00 0.00 2.29
3071 3475 4.439153 GCATGTGACATTCAGGGTTGTATG 60.439 45.833 0.00 0.00 37.89 2.39
3104 3508 7.292591 ACAAATAGTTATACTGGGTGGCTATCT 59.707 37.037 0.00 0.00 0.00 1.98
3260 3666 2.167487 GGTTTTTCTGTTGCCTTGTGGA 59.833 45.455 0.00 0.00 34.57 4.02
3264 3670 5.860941 TTTTCTGTTGCCTTGTGGAATTA 57.139 34.783 0.00 0.00 34.57 1.40
3294 3700 5.032846 TCTTATGTGGATGAAGTTCCCTCT 58.967 41.667 0.00 0.00 34.67 3.69
3360 3767 4.262249 GGGTACTACTGATGCAGATCCTTC 60.262 50.000 0.82 0.00 35.18 3.46
3367 3774 4.204799 CTGATGCAGATCCTTCATTCCAA 58.795 43.478 0.00 0.00 32.44 3.53
3383 3790 2.199208 TCCAATGAGAGAGCCATGGAA 58.801 47.619 18.40 0.00 0.00 3.53
3533 3940 1.069204 CTCATACGGGTCACCTGATGG 59.931 57.143 10.62 0.00 39.83 3.51
3737 4157 4.706962 GGGAACTCTGAATATTGTGGCTTT 59.293 41.667 0.00 0.00 0.00 3.51
3756 4176 9.518906 GTGGCTTTAGAATAGACTTAGACTTAC 57.481 37.037 0.00 0.00 0.00 2.34
3770 4190 9.190858 GACTTAGACTTACTCTGCATTGATATG 57.809 37.037 0.00 0.00 34.76 1.78
3881 6155 4.637483 ATATTTTGTGCTGTCATTCCCG 57.363 40.909 0.00 0.00 0.00 5.14
3920 6194 9.682465 AAATTATCCTTAGTTAAGAAGACCACC 57.318 33.333 0.51 0.00 35.33 4.61
3976 6250 1.002087 AGCGGGACTTTCAACTTCGAT 59.998 47.619 0.00 0.00 0.00 3.59
3983 6372 6.037172 CGGGACTTTCAACTTCGATATGAAAT 59.963 38.462 16.31 9.90 40.94 2.17
4010 6399 1.340248 ACATCAACGAACGACTGGACT 59.660 47.619 0.14 0.00 0.00 3.85
4155 6544 7.046033 GCAACTAAGTATGAGCCCTTACTAAA 58.954 38.462 0.00 0.00 33.65 1.85
4205 6624 3.428045 CCCTTCGAGAATGGTGAATTTGC 60.428 47.826 0.00 0.00 0.00 3.68
4210 6629 1.818674 AGAATGGTGAATTTGCCGGTC 59.181 47.619 1.90 0.00 0.00 4.79
4394 6830 8.068893 TGGTTAATCGATATTTCTTCTTACGC 57.931 34.615 0.00 0.00 0.00 4.42
4438 6889 5.261216 ACGAAATCTGTTCACCCCATTATT 58.739 37.500 0.00 0.00 0.00 1.40
4476 6927 2.371841 ACATTGGTAGACTGGTGAGCAA 59.628 45.455 0.00 0.00 35.28 3.91
4509 6960 4.023980 AGAACAAGTCGTCCTCCATATGA 58.976 43.478 3.65 0.00 0.00 2.15
4519 6970 2.430694 TCCTCCATATGACAACTCACCG 59.569 50.000 3.65 0.00 0.00 4.94
4522 6973 3.857052 TCCATATGACAACTCACCGTTC 58.143 45.455 3.65 0.00 32.27 3.95
4530 6981 2.271800 CAACTCACCGTTCCAGCTATC 58.728 52.381 0.00 0.00 32.27 2.08
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.141019 TTGTATGACGGGCGCTCTC 59.859 57.895 5.36 2.36 0.00 3.20
1 2 1.153628 GTTGTATGACGGGCGCTCT 60.154 57.895 5.36 0.00 0.00 4.09
2 3 0.810031 ATGTTGTATGACGGGCGCTC 60.810 55.000 7.64 0.06 0.00 5.03
3 4 1.089481 CATGTTGTATGACGGGCGCT 61.089 55.000 7.64 0.00 0.00 5.92
4 5 1.351707 CATGTTGTATGACGGGCGC 59.648 57.895 0.00 0.00 0.00 6.53
5 6 0.373370 CACATGTTGTATGACGGGCG 59.627 55.000 0.00 0.00 0.00 6.13
6 7 0.732571 CCACATGTTGTATGACGGGC 59.267 55.000 0.00 0.00 0.00 6.13
7 8 0.732571 GCCACATGTTGTATGACGGG 59.267 55.000 0.00 0.00 0.00 5.28
8 9 0.373370 CGCCACATGTTGTATGACGG 59.627 55.000 0.00 0.00 0.00 4.79
9 10 0.373370 CCGCCACATGTTGTATGACG 59.627 55.000 0.00 0.00 0.00 4.35
10 11 1.130373 CACCGCCACATGTTGTATGAC 59.870 52.381 0.00 0.00 0.00 3.06
11 12 1.447945 CACCGCCACATGTTGTATGA 58.552 50.000 0.00 0.00 0.00 2.15
12 13 0.451383 CCACCGCCACATGTTGTATG 59.549 55.000 0.00 0.00 0.00 2.39
13 14 1.312371 GCCACCGCCACATGTTGTAT 61.312 55.000 0.00 0.00 0.00 2.29
14 15 1.969064 GCCACCGCCACATGTTGTA 60.969 57.895 0.00 0.00 0.00 2.41
15 16 3.294493 GCCACCGCCACATGTTGT 61.294 61.111 0.00 0.00 0.00 3.32
16 17 2.985282 AGCCACCGCCACATGTTG 60.985 61.111 0.00 0.00 34.57 3.33
17 18 2.985282 CAGCCACCGCCACATGTT 60.985 61.111 0.00 0.00 34.57 2.71
19 20 4.720902 TCCAGCCACCGCCACATG 62.721 66.667 0.00 0.00 34.57 3.21
20 21 4.722700 GTCCAGCCACCGCCACAT 62.723 66.667 0.00 0.00 34.57 3.21
34 35 0.040425 GCGTGTCAAATGGTGTGTCC 60.040 55.000 0.00 0.00 0.00 4.02
35 36 0.944386 AGCGTGTCAAATGGTGTGTC 59.056 50.000 0.00 0.00 0.00 3.67
36 37 0.944386 GAGCGTGTCAAATGGTGTGT 59.056 50.000 0.00 0.00 0.00 3.72
37 38 0.238289 GGAGCGTGTCAAATGGTGTG 59.762 55.000 0.00 0.00 0.00 3.82
38 39 0.108585 AGGAGCGTGTCAAATGGTGT 59.891 50.000 0.00 0.00 0.00 4.16
39 40 2.002586 CTAGGAGCGTGTCAAATGGTG 58.997 52.381 0.00 0.00 0.00 4.17
40 41 1.066143 CCTAGGAGCGTGTCAAATGGT 60.066 52.381 1.05 0.00 0.00 3.55
41 42 1.656652 CCTAGGAGCGTGTCAAATGG 58.343 55.000 1.05 0.00 0.00 3.16
42 43 1.656652 CCCTAGGAGCGTGTCAAATG 58.343 55.000 11.48 0.00 0.00 2.32
43 44 0.107654 GCCCTAGGAGCGTGTCAAAT 60.108 55.000 11.48 0.00 0.00 2.32
44 45 1.295423 GCCCTAGGAGCGTGTCAAA 59.705 57.895 11.48 0.00 0.00 2.69
45 46 1.264749 ATGCCCTAGGAGCGTGTCAA 61.265 55.000 11.48 0.00 0.00 3.18
46 47 1.676678 GATGCCCTAGGAGCGTGTCA 61.677 60.000 18.34 2.59 0.00 3.58
47 48 1.068250 GATGCCCTAGGAGCGTGTC 59.932 63.158 18.34 11.75 0.00 3.67
48 49 1.264749 TTGATGCCCTAGGAGCGTGT 61.265 55.000 18.34 7.66 0.00 4.49
49 50 0.107703 TTTGATGCCCTAGGAGCGTG 60.108 55.000 18.34 0.07 0.00 5.34
50 51 0.618458 TTTTGATGCCCTAGGAGCGT 59.382 50.000 11.48 13.43 0.00 5.07
51 52 1.303309 CTTTTGATGCCCTAGGAGCG 58.697 55.000 11.48 0.00 0.00 5.03
52 53 2.019984 CACTTTTGATGCCCTAGGAGC 58.980 52.381 11.48 12.79 0.00 4.70
53 54 3.634397 TCACTTTTGATGCCCTAGGAG 57.366 47.619 11.48 1.06 0.00 3.69
54 55 3.117888 GGATCACTTTTGATGCCCTAGGA 60.118 47.826 11.48 0.00 43.13 2.94
55 56 3.217626 GGATCACTTTTGATGCCCTAGG 58.782 50.000 0.06 0.06 43.13 3.02
62 63 2.679837 CTCGTGGGGATCACTTTTGATG 59.320 50.000 0.00 0.00 42.95 3.07
63 64 2.356125 CCTCGTGGGGATCACTTTTGAT 60.356 50.000 0.00 0.00 45.78 2.57
64 65 1.003118 CCTCGTGGGGATCACTTTTGA 59.997 52.381 0.00 0.00 43.94 2.69
65 66 1.271379 ACCTCGTGGGGATCACTTTTG 60.271 52.381 8.63 0.00 43.94 2.44
66 67 1.003233 GACCTCGTGGGGATCACTTTT 59.997 52.381 8.63 0.00 43.94 2.27
67 68 0.613777 GACCTCGTGGGGATCACTTT 59.386 55.000 8.63 0.00 43.94 2.66
68 69 1.265454 GGACCTCGTGGGGATCACTT 61.265 60.000 8.63 0.00 43.94 3.16
69 70 1.686110 GGACCTCGTGGGGATCACT 60.686 63.158 8.63 0.00 43.94 3.41
70 71 2.732619 GGGACCTCGTGGGGATCAC 61.733 68.421 8.63 0.00 42.74 3.06
71 72 2.365105 GGGACCTCGTGGGGATCA 60.365 66.667 8.63 0.00 40.03 2.92
84 85 1.196766 AGGTTACCACTTCGGGGGAC 61.197 60.000 3.51 0.00 42.28 4.46
85 86 0.906282 GAGGTTACCACTTCGGGGGA 60.906 60.000 3.51 0.00 42.28 4.81
86 87 0.908180 AGAGGTTACCACTTCGGGGG 60.908 60.000 3.51 0.00 45.97 5.40
87 88 0.249398 CAGAGGTTACCACTTCGGGG 59.751 60.000 3.51 0.00 40.22 5.73
88 89 0.249398 CCAGAGGTTACCACTTCGGG 59.751 60.000 3.51 0.00 37.87 5.14
89 90 0.974383 ACCAGAGGTTACCACTTCGG 59.026 55.000 3.51 3.92 34.16 4.30
90 91 2.833631 AACCAGAGGTTACCACTTCG 57.166 50.000 3.51 0.00 44.94 3.79
91 92 4.886496 ACTAACCAGAGGTTACCACTTC 57.114 45.455 3.51 0.00 44.94 3.01
92 93 5.641789 AAACTAACCAGAGGTTACCACTT 57.358 39.130 3.51 0.00 44.94 3.16
93 94 5.842874 ACTAAACTAACCAGAGGTTACCACT 59.157 40.000 3.51 0.00 44.94 4.00
94 95 5.930569 CACTAAACTAACCAGAGGTTACCAC 59.069 44.000 3.51 0.00 44.94 4.16
95 96 5.840149 TCACTAAACTAACCAGAGGTTACCA 59.160 40.000 3.51 0.00 44.94 3.25
96 97 6.162079 GTCACTAAACTAACCAGAGGTTACC 58.838 44.000 4.59 0.00 44.94 2.85
97 98 6.162079 GGTCACTAAACTAACCAGAGGTTAC 58.838 44.000 4.59 0.00 44.94 2.50
98 99 5.840149 TGGTCACTAAACTAACCAGAGGTTA 59.160 40.000 8.25 8.25 44.94 2.85
100 101 4.228824 TGGTCACTAAACTAACCAGAGGT 58.771 43.478 0.00 0.00 36.88 3.85
101 102 4.884668 TGGTCACTAAACTAACCAGAGG 57.115 45.455 0.00 0.00 36.88 3.69
102 103 7.782049 TCATATGGTCACTAAACTAACCAGAG 58.218 38.462 2.13 0.00 44.52 3.35
103 104 7.727578 TCATATGGTCACTAAACTAACCAGA 57.272 36.000 2.13 0.00 44.52 3.86
104 105 8.041323 ACTTCATATGGTCACTAAACTAACCAG 58.959 37.037 2.13 0.00 44.52 4.00
105 106 7.913789 ACTTCATATGGTCACTAAACTAACCA 58.086 34.615 2.13 0.00 45.32 3.67
106 107 9.530633 CTACTTCATATGGTCACTAAACTAACC 57.469 37.037 2.13 0.00 0.00 2.85
109 110 8.630917 GCTCTACTTCATATGGTCACTAAACTA 58.369 37.037 2.13 0.00 0.00 2.24
110 111 7.493367 GCTCTACTTCATATGGTCACTAAACT 58.507 38.462 2.13 0.00 0.00 2.66
111 112 6.418226 CGCTCTACTTCATATGGTCACTAAAC 59.582 42.308 2.13 0.00 0.00 2.01
112 113 6.320418 TCGCTCTACTTCATATGGTCACTAAA 59.680 38.462 2.13 0.00 0.00 1.85
113 114 5.826208 TCGCTCTACTTCATATGGTCACTAA 59.174 40.000 2.13 0.00 0.00 2.24
114 115 5.238868 GTCGCTCTACTTCATATGGTCACTA 59.761 44.000 2.13 0.00 0.00 2.74
115 116 4.036971 GTCGCTCTACTTCATATGGTCACT 59.963 45.833 2.13 0.00 0.00 3.41
116 117 4.036971 AGTCGCTCTACTTCATATGGTCAC 59.963 45.833 2.13 0.00 0.00 3.67
117 118 4.207955 AGTCGCTCTACTTCATATGGTCA 58.792 43.478 2.13 0.00 0.00 4.02
118 119 4.839668 AGTCGCTCTACTTCATATGGTC 57.160 45.455 2.13 0.00 0.00 4.02
119 120 6.710597 TTTAGTCGCTCTACTTCATATGGT 57.289 37.500 2.13 0.00 0.00 3.55
120 121 7.148641 ACATTTAGTCGCTCTACTTCATATGG 58.851 38.462 2.13 0.00 0.00 2.74
121 122 9.847706 ATACATTTAGTCGCTCTACTTCATATG 57.152 33.333 0.00 0.00 0.00 1.78
122 123 9.847706 CATACATTTAGTCGCTCTACTTCATAT 57.152 33.333 0.00 0.00 0.00 1.78
123 124 9.063615 TCATACATTTAGTCGCTCTACTTCATA 57.936 33.333 0.00 0.00 0.00 2.15
124 125 7.941919 TCATACATTTAGTCGCTCTACTTCAT 58.058 34.615 0.00 0.00 0.00 2.57
125 126 7.329588 TCATACATTTAGTCGCTCTACTTCA 57.670 36.000 0.00 0.00 0.00 3.02
126 127 8.804688 ATTCATACATTTAGTCGCTCTACTTC 57.195 34.615 0.00 0.00 0.00 3.01
127 128 9.680315 GTATTCATACATTTAGTCGCTCTACTT 57.320 33.333 0.00 0.00 33.52 2.24
128 129 8.298140 GGTATTCATACATTTAGTCGCTCTACT 58.702 37.037 0.00 0.00 34.98 2.57
129 130 7.270793 CGGTATTCATACATTTAGTCGCTCTAC 59.729 40.741 0.00 0.00 34.98 2.59
130 131 7.040892 ACGGTATTCATACATTTAGTCGCTCTA 60.041 37.037 0.00 0.00 34.98 2.43
131 132 6.150318 CGGTATTCATACATTTAGTCGCTCT 58.850 40.000 0.00 0.00 34.98 4.09
132 133 5.919141 ACGGTATTCATACATTTAGTCGCTC 59.081 40.000 0.00 0.00 34.98 5.03
133 134 5.839621 ACGGTATTCATACATTTAGTCGCT 58.160 37.500 0.00 0.00 34.98 4.93
134 135 7.807687 ATACGGTATTCATACATTTAGTCGC 57.192 36.000 0.00 0.00 34.98 5.19
140 141 9.179909 TGGTTCAAATACGGTATTCATACATTT 57.820 29.630 13.41 0.00 34.98 2.32
141 142 8.740123 TGGTTCAAATACGGTATTCATACATT 57.260 30.769 13.41 0.00 34.98 2.71
142 143 7.041372 GCTGGTTCAAATACGGTATTCATACAT 60.041 37.037 13.41 0.00 34.98 2.29
143 144 6.259167 GCTGGTTCAAATACGGTATTCATACA 59.741 38.462 13.41 8.73 34.98 2.29
144 145 6.259167 TGCTGGTTCAAATACGGTATTCATAC 59.741 38.462 13.41 10.83 0.00 2.39
145 146 6.350103 TGCTGGTTCAAATACGGTATTCATA 58.650 36.000 13.41 0.67 0.00 2.15
146 147 5.189928 TGCTGGTTCAAATACGGTATTCAT 58.810 37.500 13.41 0.00 0.00 2.57
147 148 4.580868 TGCTGGTTCAAATACGGTATTCA 58.419 39.130 13.41 6.48 0.00 2.57
148 149 4.035208 CCTGCTGGTTCAAATACGGTATTC 59.965 45.833 13.41 1.90 0.00 1.75
149 150 3.945285 CCTGCTGGTTCAAATACGGTATT 59.055 43.478 7.56 7.56 0.00 1.89
150 151 3.541632 CCTGCTGGTTCAAATACGGTAT 58.458 45.455 0.51 0.00 0.00 2.73
151 152 2.355310 CCCTGCTGGTTCAAATACGGTA 60.355 50.000 9.00 0.00 0.00 4.02
152 153 1.613255 CCCTGCTGGTTCAAATACGGT 60.613 52.381 9.00 0.00 0.00 4.83
153 154 1.094785 CCCTGCTGGTTCAAATACGG 58.905 55.000 9.00 0.00 0.00 4.02
154 155 0.451783 GCCCTGCTGGTTCAAATACG 59.548 55.000 9.00 0.00 36.04 3.06
155 156 1.544724 TGCCCTGCTGGTTCAAATAC 58.455 50.000 9.00 0.00 36.04 1.89
156 157 2.170166 CTTGCCCTGCTGGTTCAAATA 58.830 47.619 9.00 0.00 36.04 1.40
157 158 0.971386 CTTGCCCTGCTGGTTCAAAT 59.029 50.000 9.00 0.00 36.04 2.32
158 159 0.396974 ACTTGCCCTGCTGGTTCAAA 60.397 50.000 9.00 0.00 36.04 2.69
159 160 0.396974 AACTTGCCCTGCTGGTTCAA 60.397 50.000 9.00 10.79 36.04 2.69
160 161 0.396974 AAACTTGCCCTGCTGGTTCA 60.397 50.000 9.00 3.46 36.04 3.18
161 162 1.541588 CTAAACTTGCCCTGCTGGTTC 59.458 52.381 9.00 0.76 36.04 3.62
162 163 1.133482 ACTAAACTTGCCCTGCTGGTT 60.133 47.619 9.00 0.00 36.04 3.67
163 164 0.478507 ACTAAACTTGCCCTGCTGGT 59.521 50.000 9.00 0.00 36.04 4.00
164 165 0.883833 CACTAAACTTGCCCTGCTGG 59.116 55.000 1.89 1.89 37.09 4.85
165 166 1.537202 GTCACTAAACTTGCCCTGCTG 59.463 52.381 0.00 0.00 0.00 4.41
166 167 1.545651 GGTCACTAAACTTGCCCTGCT 60.546 52.381 0.00 0.00 0.00 4.24
167 168 0.881796 GGTCACTAAACTTGCCCTGC 59.118 55.000 0.00 0.00 0.00 4.85
168 169 1.156736 CGGTCACTAAACTTGCCCTG 58.843 55.000 0.00 0.00 0.00 4.45
169 170 0.763035 ACGGTCACTAAACTTGCCCT 59.237 50.000 0.00 0.00 0.00 5.19
170 171 2.460757 TACGGTCACTAAACTTGCCC 57.539 50.000 0.00 0.00 0.00 5.36
171 172 5.366829 AAAATACGGTCACTAAACTTGCC 57.633 39.130 0.00 0.00 0.00 4.52
172 173 7.578852 ACTTAAAATACGGTCACTAAACTTGC 58.421 34.615 0.00 0.00 0.00 4.01
193 194 9.765295 AGTCCCTCTACTACTTCAAAATACTTA 57.235 33.333 0.00 0.00 0.00 2.24
194 195 8.667592 AGTCCCTCTACTACTTCAAAATACTT 57.332 34.615 0.00 0.00 0.00 2.24
195 196 9.765295 TTAGTCCCTCTACTACTTCAAAATACT 57.235 33.333 0.00 0.00 31.73 2.12
199 200 9.720769 CATTTTAGTCCCTCTACTACTTCAAAA 57.279 33.333 0.00 0.00 31.73 2.44
200 201 9.096823 TCATTTTAGTCCCTCTACTACTTCAAA 57.903 33.333 0.00 0.00 31.73 2.69
201 202 8.660295 TCATTTTAGTCCCTCTACTACTTCAA 57.340 34.615 0.00 0.00 31.73 2.69
202 203 7.894364 ACTCATTTTAGTCCCTCTACTACTTCA 59.106 37.037 0.00 0.00 31.73 3.02
203 204 8.296211 ACTCATTTTAGTCCCTCTACTACTTC 57.704 38.462 0.00 0.00 31.73 3.01
204 205 8.667592 AACTCATTTTAGTCCCTCTACTACTT 57.332 34.615 0.00 0.00 31.73 2.24
205 206 9.187996 GTAACTCATTTTAGTCCCTCTACTACT 57.812 37.037 0.00 0.00 31.73 2.57
206 207 8.964772 TGTAACTCATTTTAGTCCCTCTACTAC 58.035 37.037 0.00 0.00 31.73 2.73
207 208 9.186837 CTGTAACTCATTTTAGTCCCTCTACTA 57.813 37.037 0.00 0.00 0.00 1.82
208 209 7.894364 TCTGTAACTCATTTTAGTCCCTCTACT 59.106 37.037 0.00 0.00 0.00 2.57
209 210 8.064336 TCTGTAACTCATTTTAGTCCCTCTAC 57.936 38.462 0.00 0.00 0.00 2.59
210 211 7.147880 GCTCTGTAACTCATTTTAGTCCCTCTA 60.148 40.741 0.00 0.00 0.00 2.43
211 212 6.351456 GCTCTGTAACTCATTTTAGTCCCTCT 60.351 42.308 0.00 0.00 0.00 3.69
212 213 5.813157 GCTCTGTAACTCATTTTAGTCCCTC 59.187 44.000 0.00 0.00 0.00 4.30
213 214 5.248477 TGCTCTGTAACTCATTTTAGTCCCT 59.752 40.000 0.00 0.00 0.00 4.20
214 215 5.488341 TGCTCTGTAACTCATTTTAGTCCC 58.512 41.667 0.00 0.00 0.00 4.46
215 216 7.617041 ATTGCTCTGTAACTCATTTTAGTCC 57.383 36.000 0.00 0.00 0.00 3.85
218 219 9.495754 GCTAAATTGCTCTGTAACTCATTTTAG 57.504 33.333 0.00 0.00 36.49 1.85
219 220 9.231297 AGCTAAATTGCTCTGTAACTCATTTTA 57.769 29.630 0.00 0.00 39.34 1.52
220 221 8.115490 AGCTAAATTGCTCTGTAACTCATTTT 57.885 30.769 0.00 0.00 39.34 1.82
221 222 7.693969 AGCTAAATTGCTCTGTAACTCATTT 57.306 32.000 0.00 0.00 39.34 2.32
292 293 2.779506 CCTAGGCGGTGAAGAGTTTTT 58.220 47.619 0.00 0.00 0.00 1.94
293 294 1.610886 GCCTAGGCGGTGAAGAGTTTT 60.611 52.381 20.16 0.00 34.25 2.43
294 295 0.036294 GCCTAGGCGGTGAAGAGTTT 60.036 55.000 20.16 0.00 34.25 2.66
295 296 1.597461 GCCTAGGCGGTGAAGAGTT 59.403 57.895 20.16 0.00 34.25 3.01
296 297 3.300013 GCCTAGGCGGTGAAGAGT 58.700 61.111 20.16 0.00 34.25 3.24
378 379 4.452733 AGTTAGCGCGGGTCCTGC 62.453 66.667 13.20 13.20 0.00 4.85
379 380 2.509336 CAGTTAGCGCGGGTCCTG 60.509 66.667 8.83 1.27 0.00 3.86
380 381 3.771160 CCAGTTAGCGCGGGTCCT 61.771 66.667 8.83 0.00 0.00 3.85
415 416 2.515071 GCGGATGAGGCCAGATCCT 61.515 63.158 23.77 0.31 36.70 3.24
416 417 2.031768 GCGGATGAGGCCAGATCC 59.968 66.667 18.99 18.99 35.65 3.36
424 425 4.147449 TGTGCGAGGCGGATGAGG 62.147 66.667 0.00 0.00 0.00 3.86
425 426 2.887568 GTGTGCGAGGCGGATGAG 60.888 66.667 0.00 0.00 0.00 2.90
426 427 4.451150 GGTGTGCGAGGCGGATGA 62.451 66.667 0.00 0.00 0.00 2.92
440 441 4.715523 AACGATGCGGGTGGGGTG 62.716 66.667 0.00 0.00 0.00 4.61
441 442 4.404098 GAACGATGCGGGTGGGGT 62.404 66.667 0.00 0.00 0.00 4.95
446 447 4.690719 TTGGCGAACGATGCGGGT 62.691 61.111 0.00 0.00 0.00 5.28
447 448 4.160635 GTTGGCGAACGATGCGGG 62.161 66.667 0.00 0.00 0.00 6.13
448 449 4.160635 GGTTGGCGAACGATGCGG 62.161 66.667 5.46 0.00 32.28 5.69
449 450 4.499023 CGGTTGGCGAACGATGCG 62.499 66.667 6.24 0.00 32.28 4.73
450 451 4.811761 GCGGTTGGCGAACGATGC 62.812 66.667 18.09 5.99 32.28 3.91
459 460 2.436824 GAAGGAGGAGCGGTTGGC 60.437 66.667 0.00 0.00 44.05 4.52
460 461 2.269241 GGAAGGAGGAGCGGTTGG 59.731 66.667 0.00 0.00 0.00 3.77
461 462 2.125512 CGGAAGGAGGAGCGGTTG 60.126 66.667 0.00 0.00 0.00 3.77
462 463 4.083862 GCGGAAGGAGGAGCGGTT 62.084 66.667 0.00 0.00 0.00 4.44
465 466 4.821589 GTGGCGGAAGGAGGAGCG 62.822 72.222 0.00 0.00 0.00 5.03
466 467 4.475135 GGTGGCGGAAGGAGGAGC 62.475 72.222 0.00 0.00 0.00 4.70
467 468 1.048724 TATGGTGGCGGAAGGAGGAG 61.049 60.000 0.00 0.00 0.00 3.69
468 469 0.399949 ATATGGTGGCGGAAGGAGGA 60.400 55.000 0.00 0.00 0.00 3.71
469 470 0.035458 GATATGGTGGCGGAAGGAGG 59.965 60.000 0.00 0.00 0.00 4.30
470 471 0.758734 TGATATGGTGGCGGAAGGAG 59.241 55.000 0.00 0.00 0.00 3.69
471 472 1.208706 TTGATATGGTGGCGGAAGGA 58.791 50.000 0.00 0.00 0.00 3.36
472 473 1.881973 CATTGATATGGTGGCGGAAGG 59.118 52.381 0.00 0.00 0.00 3.46
473 474 2.291465 CACATTGATATGGTGGCGGAAG 59.709 50.000 0.00 0.00 36.01 3.46
474 475 2.092699 TCACATTGATATGGTGGCGGAA 60.093 45.455 0.00 0.00 36.01 4.30
475 476 1.488393 TCACATTGATATGGTGGCGGA 59.512 47.619 0.00 0.00 36.01 5.54
476 477 1.603802 GTCACATTGATATGGTGGCGG 59.396 52.381 0.00 0.00 36.01 6.13
477 478 1.261354 CGTCACATTGATATGGTGGCG 59.739 52.381 3.59 3.59 35.90 5.69
478 479 1.603802 CCGTCACATTGATATGGTGGC 59.396 52.381 0.00 0.00 36.01 5.01
479 480 2.158827 TCCCGTCACATTGATATGGTGG 60.159 50.000 0.00 0.00 36.01 4.61
480 481 3.192541 TCCCGTCACATTGATATGGTG 57.807 47.619 0.00 0.00 36.01 4.17
481 482 4.020218 CCTATCCCGTCACATTGATATGGT 60.020 45.833 0.00 0.00 36.01 3.55
482 483 4.507710 CCTATCCCGTCACATTGATATGG 58.492 47.826 0.00 0.00 36.01 2.74
483 484 4.507710 CCCTATCCCGTCACATTGATATG 58.492 47.826 0.00 0.00 37.79 1.78
484 485 3.055094 GCCCTATCCCGTCACATTGATAT 60.055 47.826 0.00 0.00 0.00 1.63
485 486 2.301870 GCCCTATCCCGTCACATTGATA 59.698 50.000 0.00 0.00 0.00 2.15
486 487 1.072331 GCCCTATCCCGTCACATTGAT 59.928 52.381 0.00 0.00 0.00 2.57
487 488 0.468226 GCCCTATCCCGTCACATTGA 59.532 55.000 0.00 0.00 0.00 2.57
488 489 0.880278 CGCCCTATCCCGTCACATTG 60.880 60.000 0.00 0.00 0.00 2.82
489 490 1.445942 CGCCCTATCCCGTCACATT 59.554 57.895 0.00 0.00 0.00 2.71
490 491 2.507854 CCGCCCTATCCCGTCACAT 61.508 63.158 0.00 0.00 0.00 3.21
491 492 3.151710 CCGCCCTATCCCGTCACA 61.152 66.667 0.00 0.00 0.00 3.58
492 493 2.836360 TCCGCCCTATCCCGTCAC 60.836 66.667 0.00 0.00 0.00 3.67
493 494 2.836360 GTCCGCCCTATCCCGTCA 60.836 66.667 0.00 0.00 0.00 4.35
494 495 3.974757 CGTCCGCCCTATCCCGTC 61.975 72.222 0.00 0.00 0.00 4.79
495 496 4.511246 TCGTCCGCCCTATCCCGT 62.511 66.667 0.00 0.00 0.00 5.28
496 497 3.671411 CTCGTCCGCCCTATCCCG 61.671 72.222 0.00 0.00 0.00 5.14
497 498 2.203451 TCTCGTCCGCCCTATCCC 60.203 66.667 0.00 0.00 0.00 3.85
498 499 2.921797 GCTCTCGTCCGCCCTATCC 61.922 68.421 0.00 0.00 0.00 2.59
499 500 2.136196 CTGCTCTCGTCCGCCCTATC 62.136 65.000 0.00 0.00 0.00 2.08
500 501 2.123854 TGCTCTCGTCCGCCCTAT 60.124 61.111 0.00 0.00 0.00 2.57
501 502 2.829003 CTGCTCTCGTCCGCCCTA 60.829 66.667 0.00 0.00 0.00 3.53
559 560 1.066587 GGATCTCTCCTGTTCGGCG 59.933 63.158 0.00 0.00 38.65 6.46
568 569 3.917760 CGCGGGTGGGATCTCTCC 61.918 72.222 5.02 5.02 41.26 3.71
600 601 1.123861 AGCCTGACCTCTCACTGCAA 61.124 55.000 0.00 0.00 0.00 4.08
612 613 0.247736 AGTGAATCACCGAGCCTGAC 59.752 55.000 10.12 0.00 34.49 3.51
613 614 0.247460 CAGTGAATCACCGAGCCTGA 59.753 55.000 10.12 0.00 34.49 3.86
614 615 0.247460 TCAGTGAATCACCGAGCCTG 59.753 55.000 10.12 0.70 34.49 4.85
615 616 0.247736 GTCAGTGAATCACCGAGCCT 59.752 55.000 10.12 0.00 34.49 4.58
616 617 0.247736 AGTCAGTGAATCACCGAGCC 59.752 55.000 10.12 0.00 34.49 4.70
617 618 1.067565 TCAGTCAGTGAATCACCGAGC 60.068 52.381 10.12 1.03 34.49 5.03
618 619 2.989840 GTTCAGTCAGTGAATCACCGAG 59.010 50.000 10.12 0.78 46.99 4.63
619 620 2.628178 AGTTCAGTCAGTGAATCACCGA 59.372 45.455 10.12 1.95 46.99 4.69
620 621 3.032017 AGTTCAGTCAGTGAATCACCG 57.968 47.619 10.12 0.00 46.99 4.94
621 622 3.929610 GCTAGTTCAGTCAGTGAATCACC 59.070 47.826 10.12 0.00 46.99 4.02
622 623 4.815269 AGCTAGTTCAGTCAGTGAATCAC 58.185 43.478 5.02 5.02 46.99 3.06
623 624 5.221521 ACAAGCTAGTTCAGTCAGTGAATCA 60.222 40.000 0.00 0.00 46.99 2.57
624 625 5.233988 ACAAGCTAGTTCAGTCAGTGAATC 58.766 41.667 0.00 0.00 46.99 2.52
625 626 5.220710 ACAAGCTAGTTCAGTCAGTGAAT 57.779 39.130 0.00 0.00 46.99 2.57
626 627 4.672587 ACAAGCTAGTTCAGTCAGTGAA 57.327 40.909 0.00 0.00 43.26 3.18
627 628 4.672587 AACAAGCTAGTTCAGTCAGTGA 57.327 40.909 0.00 0.00 0.00 3.41
628 629 5.289595 TGTAACAAGCTAGTTCAGTCAGTG 58.710 41.667 0.00 0.00 33.07 3.66
629 630 5.531122 TGTAACAAGCTAGTTCAGTCAGT 57.469 39.130 0.00 0.00 33.07 3.41
630 631 5.578727 GGATGTAACAAGCTAGTTCAGTCAG 59.421 44.000 0.00 0.00 33.07 3.51
631 632 5.011635 TGGATGTAACAAGCTAGTTCAGTCA 59.988 40.000 0.00 0.00 33.07 3.41
632 633 5.479306 TGGATGTAACAAGCTAGTTCAGTC 58.521 41.667 0.00 0.00 33.07 3.51
633 634 5.483685 TGGATGTAACAAGCTAGTTCAGT 57.516 39.130 0.00 0.00 33.07 3.41
634 635 6.108687 TGATGGATGTAACAAGCTAGTTCAG 58.891 40.000 0.00 0.00 33.07 3.02
635 636 6.048732 TGATGGATGTAACAAGCTAGTTCA 57.951 37.500 0.00 0.00 33.07 3.18
636 637 6.341316 TCTGATGGATGTAACAAGCTAGTTC 58.659 40.000 0.00 0.00 33.07 3.01
637 638 6.299805 TCTGATGGATGTAACAAGCTAGTT 57.700 37.500 0.00 0.00 35.55 2.24
638 639 5.939764 TCTGATGGATGTAACAAGCTAGT 57.060 39.130 0.00 0.00 0.00 2.57
639 640 6.988580 TGAATCTGATGGATGTAACAAGCTAG 59.011 38.462 0.00 0.00 34.45 3.42
640 641 6.888105 TGAATCTGATGGATGTAACAAGCTA 58.112 36.000 0.00 0.00 34.45 3.32
641 642 5.748402 TGAATCTGATGGATGTAACAAGCT 58.252 37.500 0.00 0.00 34.45 3.74
642 643 6.630444 ATGAATCTGATGGATGTAACAAGC 57.370 37.500 0.00 0.00 34.45 4.01
643 644 7.067859 ACCAATGAATCTGATGGATGTAACAAG 59.932 37.037 1.43 0.00 36.75 3.16
644 645 6.891361 ACCAATGAATCTGATGGATGTAACAA 59.109 34.615 1.43 0.00 36.75 2.83
645 646 6.425735 ACCAATGAATCTGATGGATGTAACA 58.574 36.000 1.43 0.00 36.75 2.41
650 651 8.635328 TGATTTAACCAATGAATCTGATGGATG 58.365 33.333 1.43 0.00 36.75 3.51
653 654 7.919091 CACTGATTTAACCAATGAATCTGATGG 59.081 37.037 8.51 0.00 38.91 3.51
663 664 3.763360 TCCAGCCACTGATTTAACCAATG 59.237 43.478 0.00 0.00 32.44 2.82
664 665 4.046286 TCCAGCCACTGATTTAACCAAT 57.954 40.909 0.00 0.00 32.44 3.16
673 701 2.508716 ACATCTGAATCCAGCCACTGAT 59.491 45.455 0.00 0.00 40.20 2.90
681 709 5.236695 CAGTATCTTGCACATCTGAATCCAG 59.763 44.000 0.00 0.00 41.74 3.86
703 731 1.987770 GCATCGGCAACAAATTCACAG 59.012 47.619 0.00 0.00 40.72 3.66
748 776 5.580998 AGGGAGTAGAACACTTGTATGAGA 58.419 41.667 0.00 0.00 37.72 3.27
749 777 5.163499 GGAGGGAGTAGAACACTTGTATGAG 60.163 48.000 0.00 0.00 37.72 2.90
754 782 1.893801 CGGAGGGAGTAGAACACTTGT 59.106 52.381 0.00 0.00 37.72 3.16
757 785 1.616456 GGACGGAGGGAGTAGAACACT 60.616 57.143 0.00 0.00 41.47 3.55
758 786 0.816373 GGACGGAGGGAGTAGAACAC 59.184 60.000 0.00 0.00 0.00 3.32
766 794 5.269991 TCTTATATTATGGGACGGAGGGAG 58.730 45.833 0.00 0.00 0.00 4.30
768 796 5.623824 CGTTCTTATATTATGGGACGGAGGG 60.624 48.000 0.00 0.00 0.00 4.30
769 797 5.047519 ACGTTCTTATATTATGGGACGGAGG 60.048 44.000 13.18 0.00 0.00 4.30
770 798 6.022163 ACGTTCTTATATTATGGGACGGAG 57.978 41.667 13.18 0.00 0.00 4.63
772 800 7.486802 AAAACGTTCTTATATTATGGGACGG 57.513 36.000 0.00 1.76 0.00 4.79
773 801 8.605746 TCAAAAACGTTCTTATATTATGGGACG 58.394 33.333 0.00 9.33 0.00 4.79
774 802 9.712359 GTCAAAAACGTTCTTATATTATGGGAC 57.288 33.333 0.00 0.00 0.00 4.46
775 803 9.451002 TGTCAAAAACGTTCTTATATTATGGGA 57.549 29.630 0.00 0.00 0.00 4.37
776 804 9.498307 GTGTCAAAAACGTTCTTATATTATGGG 57.502 33.333 0.00 0.00 0.00 4.00
782 810 9.263538 TGTGTAGTGTCAAAAACGTTCTTATAT 57.736 29.630 0.00 0.00 0.00 0.86
784 812 7.542534 TGTGTAGTGTCAAAAACGTTCTTAT 57.457 32.000 0.00 0.00 0.00 1.73
785 813 6.964741 TGTGTAGTGTCAAAAACGTTCTTA 57.035 33.333 0.00 0.00 0.00 2.10
786 814 5.866335 TGTGTAGTGTCAAAAACGTTCTT 57.134 34.783 0.00 0.00 0.00 2.52
787 815 5.007332 GGATGTGTAGTGTCAAAAACGTTCT 59.993 40.000 0.00 0.00 0.00 3.01
789 817 4.879545 AGGATGTGTAGTGTCAAAAACGTT 59.120 37.500 0.00 0.00 0.00 3.99
790 818 4.448210 AGGATGTGTAGTGTCAAAAACGT 58.552 39.130 0.00 0.00 0.00 3.99
791 819 5.418310 AAGGATGTGTAGTGTCAAAAACG 57.582 39.130 0.00 0.00 0.00 3.60
795 823 7.333423 GCACTATTAAGGATGTGTAGTGTCAAA 59.667 37.037 11.17 0.00 42.47 2.69
796 824 6.816640 GCACTATTAAGGATGTGTAGTGTCAA 59.183 38.462 11.17 0.00 42.47 3.18
797 825 6.338146 GCACTATTAAGGATGTGTAGTGTCA 58.662 40.000 11.17 0.00 42.47 3.58
799 827 5.425539 AGGCACTATTAAGGATGTGTAGTGT 59.574 40.000 11.17 0.00 42.47 3.55
800 828 5.755375 CAGGCACTATTAAGGATGTGTAGTG 59.245 44.000 6.50 6.50 43.04 2.74
801 829 5.661312 TCAGGCACTATTAAGGATGTGTAGT 59.339 40.000 0.00 0.00 36.02 2.73
802 830 6.161855 TCAGGCACTATTAAGGATGTGTAG 57.838 41.667 0.00 0.00 36.02 2.74
803 831 6.156256 AGTTCAGGCACTATTAAGGATGTGTA 59.844 38.462 0.00 0.00 36.02 2.90
804 832 5.045578 AGTTCAGGCACTATTAAGGATGTGT 60.046 40.000 0.00 0.00 36.02 3.72
805 833 5.431765 AGTTCAGGCACTATTAAGGATGTG 58.568 41.667 0.00 0.00 36.02 3.21
806 834 5.396884 GGAGTTCAGGCACTATTAAGGATGT 60.397 44.000 0.00 0.00 36.02 3.06
807 835 5.059833 GGAGTTCAGGCACTATTAAGGATG 58.940 45.833 0.00 0.00 36.02 3.51
837 905 0.037326 GCGAGACCACCAGATTGTGA 60.037 55.000 0.00 0.00 38.55 3.58
855 929 0.607489 ACACTCAGACCAGCAATGGC 60.607 55.000 0.00 0.00 41.61 4.40
881 955 5.233988 ACAATCAGAGAAGTGCTACAGAAC 58.766 41.667 0.00 0.00 0.00 3.01
916 990 6.934048 AGCAAATCTATTCTGGCTTCTAAC 57.066 37.500 0.00 0.00 0.00 2.34
952 1026 4.385199 CCATATACAGAGGGGTGAAAGCAA 60.385 45.833 0.00 0.00 34.77 3.91
960 1035 6.443849 CCATATTACACCATATACAGAGGGGT 59.556 42.308 0.00 0.00 42.78 4.95
986 1061 4.275443 GCTGAATCATTTAGAAGGAGCAGG 59.725 45.833 0.00 0.00 32.03 4.85
987 1062 4.880120 TGCTGAATCATTTAGAAGGAGCAG 59.120 41.667 0.00 0.00 32.69 4.24
991 1066 5.441718 ACCTGCTGAATCATTTAGAAGGA 57.558 39.130 21.05 0.00 39.27 3.36
994 1069 7.118723 ACCAATACCTGCTGAATCATTTAGAA 58.881 34.615 0.00 0.00 0.00 2.10
996 1071 6.016777 GGACCAATACCTGCTGAATCATTTAG 60.017 42.308 0.00 0.00 0.00 1.85
1020 1095 2.372264 CTGAACACCATGATCAAGGGG 58.628 52.381 17.66 17.66 28.69 4.79
1021 1096 1.747355 GCTGAACACCATGATCAAGGG 59.253 52.381 20.54 16.91 28.69 3.95
1022 1097 2.422479 CTGCTGAACACCATGATCAAGG 59.578 50.000 15.39 15.39 28.69 3.61
1024 1099 2.439409 CCTGCTGAACACCATGATCAA 58.561 47.619 0.00 0.00 28.69 2.57
1043 1118 1.056660 TCTGAGGTTCACTTCCACCC 58.943 55.000 0.00 0.00 32.92 4.61
1117 1192 5.799827 AATGAGATTAGAGGAGCTACACC 57.200 43.478 0.00 0.00 0.00 4.16
1172 1247 2.983229 ACAGAACATAGCCTGCTCAAG 58.017 47.619 0.00 0.00 33.90 3.02
1277 1352 3.451141 ACGAAGCAAAGCAAATTCCAA 57.549 38.095 0.00 0.00 0.00 3.53
1307 1382 3.071479 GACCATCCGTTAAAACTGAGCA 58.929 45.455 0.00 0.00 0.00 4.26
1360 1435 1.112315 AGCACATGCCGGACCAAAAA 61.112 50.000 5.05 0.00 43.38 1.94
1397 1472 4.641396 TGGCTGTGGATATATACTGCAAC 58.359 43.478 15.35 3.58 41.65 4.17
1406 1481 1.132721 AGCTCCCTGGCTGTGGATATA 60.133 52.381 0.00 0.00 41.43 0.86
1478 1553 1.697432 TGAGAACACGGAAACCCATCT 59.303 47.619 0.00 0.00 0.00 2.90
1479 1554 2.076863 CTGAGAACACGGAAACCCATC 58.923 52.381 0.00 0.00 0.00 3.51
1489 1564 3.473093 ACTACGTCATCTGAGAACACG 57.527 47.619 13.14 13.14 0.00 4.49
1505 1580 7.655732 ACATTCCCAAAAAGCATACAAAACTAC 59.344 33.333 0.00 0.00 0.00 2.73
1530 1605 7.067008 AGGCTGTACCACATTCAACATATTAAC 59.933 37.037 0.00 0.00 43.14 2.01
1543 1618 1.283029 AGATTGCAGGCTGTACCACAT 59.717 47.619 17.16 1.41 43.14 3.21
1565 1640 4.466828 CTCAACAAATGTTAGCTGGAACG 58.533 43.478 0.00 0.00 36.32 3.95
1635 1710 9.546428 AAATATGCAAGGGAAAAACTATATTGC 57.454 29.630 0.00 0.00 41.36 3.56
2059 2135 8.874816 CAAAAGAAAAGGATTGTCCGTTAAAAA 58.125 29.630 0.00 0.00 42.75 1.94
2060 2136 7.492994 CCAAAAGAAAAGGATTGTCCGTTAAAA 59.507 33.333 0.00 0.00 42.75 1.52
2061 2137 6.981559 CCAAAAGAAAAGGATTGTCCGTTAAA 59.018 34.615 0.00 0.00 42.75 1.52
2062 2138 6.321690 TCCAAAAGAAAAGGATTGTCCGTTAA 59.678 34.615 0.00 0.00 42.75 2.01
2063 2139 5.828859 TCCAAAAGAAAAGGATTGTCCGTTA 59.171 36.000 0.00 0.00 42.75 3.18
2064 2140 4.647399 TCCAAAAGAAAAGGATTGTCCGTT 59.353 37.500 0.00 0.00 42.75 4.44
2065 2141 4.211920 TCCAAAAGAAAAGGATTGTCCGT 58.788 39.130 0.00 0.00 42.75 4.69
2066 2142 4.846779 TCCAAAAGAAAAGGATTGTCCG 57.153 40.909 0.00 0.00 42.75 4.79
2096 2172 7.970614 GGTGTCCAGATTTTCATGAATAGTTTC 59.029 37.037 9.40 0.00 0.00 2.78
2119 2195 7.883217 AGAAGTGTATCCTTACATATACGGTG 58.117 38.462 0.00 0.00 40.35 4.94
2194 2433 3.817084 TGCAGAACACTGAATGGAAGAAG 59.183 43.478 0.00 0.00 33.94 2.85
2210 2449 7.122204 AGACATTCTCATCATCAAAATGCAGAA 59.878 33.333 0.00 0.00 31.96 3.02
2323 2604 7.847711 TTTGAACCCCTGAATCAAGAAAATA 57.152 32.000 0.00 0.00 34.80 1.40
2324 2605 6.745794 TTTGAACCCCTGAATCAAGAAAAT 57.254 33.333 0.00 0.00 34.80 1.82
2325 2606 6.552445 TTTTGAACCCCTGAATCAAGAAAA 57.448 33.333 0.00 0.00 34.80 2.29
2326 2607 5.453198 GCTTTTGAACCCCTGAATCAAGAAA 60.453 40.000 0.00 0.00 34.80 2.52
2341 2626 4.513318 ACTCACTGAGCTTAGCTTTTGAAC 59.487 41.667 8.58 0.00 39.88 3.18
2426 2711 6.204688 GGGTCAGCATAAATATGAATCAACGA 59.795 38.462 4.63 0.00 35.75 3.85
2542 2917 4.789012 TTTCATTTTCTGTCTGCATCCC 57.211 40.909 0.00 0.00 0.00 3.85
2650 3034 7.171434 GGACAAGATTTTACTTACGTTGATCG 58.829 38.462 0.00 0.00 46.00 3.69
2772 3158 9.621629 CCAGTATCTCTTTCTCTTCTAGTTCTA 57.378 37.037 0.00 0.00 0.00 2.10
2773 3159 8.333235 TCCAGTATCTCTTTCTCTTCTAGTTCT 58.667 37.037 0.00 0.00 0.00 3.01
2774 3160 8.514330 TCCAGTATCTCTTTCTCTTCTAGTTC 57.486 38.462 0.00 0.00 0.00 3.01
2775 3161 7.068226 GCTCCAGTATCTCTTTCTCTTCTAGTT 59.932 40.741 0.00 0.00 0.00 2.24
2776 3162 6.546034 GCTCCAGTATCTCTTTCTCTTCTAGT 59.454 42.308 0.00 0.00 0.00 2.57
2777 3163 6.293407 CGCTCCAGTATCTCTTTCTCTTCTAG 60.293 46.154 0.00 0.00 0.00 2.43
2783 3169 2.544903 GGCGCTCCAGTATCTCTTTCTC 60.545 54.545 7.64 0.00 0.00 2.87
2905 3298 8.044574 TCATGTGGATAAAAGATAATGAGGGA 57.955 34.615 0.00 0.00 0.00 4.20
2951 3344 1.203287 TCAGCGAGACCAGTCAATGAG 59.797 52.381 0.00 0.00 0.00 2.90
2984 3377 7.321717 ACATAGCATTGATTGTACCTATCCT 57.678 36.000 0.00 0.00 0.00 3.24
2985 3378 7.986085 AACATAGCATTGATTGTACCTATCC 57.014 36.000 0.00 0.00 0.00 2.59
2986 3379 9.056005 TCAAACATAGCATTGATTGTACCTATC 57.944 33.333 8.17 0.00 32.85 2.08
2994 3393 9.188588 GGTAATGATCAAACATAGCATTGATTG 57.811 33.333 0.00 3.47 44.15 2.67
3054 3458 5.674525 TCATCTCATACAACCCTGAATGTC 58.325 41.667 0.00 0.00 0.00 3.06
3070 3474 8.768397 ACCCAGTATAACTATTTGTTCATCTCA 58.232 33.333 0.00 0.00 39.89 3.27
3071 3475 9.046296 CACCCAGTATAACTATTTGTTCATCTC 57.954 37.037 0.00 0.00 39.89 2.75
3093 3497 5.810080 ACATAGTAAGAAGATAGCCACCC 57.190 43.478 0.00 0.00 0.00 4.61
3104 3508 8.696374 CAGTTAGGAGATCCAACATAGTAAGAA 58.304 37.037 0.92 0.00 38.89 2.52
3148 3554 6.377429 AGTCAACCATTTCGTCTATCAGACTA 59.623 38.462 4.91 0.00 42.92 2.59
3264 3670 8.306761 GGAACTTCATCCACATAAGAAACAATT 58.693 33.333 0.00 0.00 39.42 2.32
3294 3700 0.700564 AATCCAGCAGAAAGGGAGCA 59.299 50.000 0.00 0.00 33.47 4.26
3360 3767 2.885266 CCATGGCTCTCTCATTGGAATG 59.115 50.000 0.00 0.00 37.75 2.67
3367 3774 3.244491 GCTATGTTCCATGGCTCTCTCAT 60.244 47.826 6.96 7.47 0.00 2.90
3715 4135 5.904362 AAAGCCACAATATTCAGAGTTCC 57.096 39.130 0.00 0.00 0.00 3.62
3737 4157 9.854668 ATGCAGAGTAAGTCTAAGTCTATTCTA 57.145 33.333 0.00 0.00 32.51 2.10
3756 4176 7.710044 ACTCTTGACTAACATATCAATGCAGAG 59.290 37.037 0.00 0.00 36.50 3.35
3817 4237 7.745472 ATGACATCTGATATATGGCAAAGAGCA 60.745 37.037 0.00 0.00 45.23 4.26
3818 4238 5.936372 TGACATCTGATATATGGCAAAGAGC 59.064 40.000 0.00 0.00 39.42 4.09
3819 4239 9.833917 ATATGACATCTGATATATGGCAAAGAG 57.166 33.333 0.00 0.00 45.23 2.85
3881 6155 6.579491 AAGGATAATTTAGTGACGCGTAAC 57.421 37.500 19.51 19.51 0.00 2.50
3913 6187 0.252284 CCTGTGTAGAGGGGTGGTCT 60.252 60.000 0.00 0.00 0.00 3.85
3914 6188 1.900545 GCCTGTGTAGAGGGGTGGTC 61.901 65.000 0.00 0.00 33.17 4.02
3915 6189 1.918800 GCCTGTGTAGAGGGGTGGT 60.919 63.158 0.00 0.00 33.17 4.16
3920 6194 0.404040 TTTTGGGCCTGTGTAGAGGG 59.596 55.000 4.53 0.00 33.17 4.30
3983 6372 6.645827 TCCAGTCGTTCGTTGATGTTAATTTA 59.354 34.615 0.00 0.00 0.00 1.40
3998 6387 4.171754 GGTTACACATAGTCCAGTCGTTC 58.828 47.826 0.00 0.00 0.00 3.95
4010 6399 9.391006 GATAAAGGAACTGATTGGTTACACATA 57.609 33.333 0.00 0.00 40.86 2.29
4171 6560 6.017852 CCATTCTCGAAGGGTCTATTAAAAGC 60.018 42.308 2.34 0.00 37.47 3.51
4205 6624 2.557056 TCTCAAGTGACAGTAAGACCGG 59.443 50.000 0.00 0.00 0.00 5.28
4229 6648 6.321717 TCAACAAATATCCGCATTCAGAAAC 58.678 36.000 0.00 0.00 0.00 2.78
4298 6717 8.378115 TGGATCTGGAATCCAAAATAAAATGT 57.622 30.769 2.61 0.00 44.54 2.71
4388 6824 0.801067 GGCTACGTGGTGAGCGTAAG 60.801 60.000 0.00 0.00 43.00 2.34
4390 6826 1.929806 CTGGCTACGTGGTGAGCGTA 61.930 60.000 0.00 0.00 42.85 4.42
4391 6827 3.282745 CTGGCTACGTGGTGAGCGT 62.283 63.158 0.00 0.00 45.11 5.07
4392 6828 2.507102 CTGGCTACGTGGTGAGCG 60.507 66.667 0.00 0.00 39.72 5.03
4393 6829 1.153745 CTCTGGCTACGTGGTGAGC 60.154 63.158 0.00 0.00 38.00 4.26
4394 6830 0.888619 TTCTCTGGCTACGTGGTGAG 59.111 55.000 0.00 5.40 0.00 3.51
4438 6889 9.757227 CTACCAATGTTTTGTCCTTTGAAATAA 57.243 29.630 0.00 0.00 0.00 1.40
4476 6927 5.065218 GGACGACTTGTTCTTATCAATGCAT 59.935 40.000 0.00 0.00 0.00 3.96
4509 6960 1.045407 TAGCTGGAACGGTGAGTTGT 58.955 50.000 0.00 0.00 44.35 3.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.