Multiple sequence alignment - TraesCS6B01G039300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G039300 chr6B 100.000 5837 0 0 1 5837 23638260 23644096 0.000000e+00 10780.0
1 TraesCS6B01G039300 chr6B 82.690 855 136 10 2202 3049 6850486 6851335 0.000000e+00 749.0
2 TraesCS6B01G039300 chr6B 82.360 856 133 15 2202 3049 7102015 7101170 0.000000e+00 728.0
3 TraesCS6B01G039300 chr6B 82.126 856 135 15 2202 3049 7154254 7153409 0.000000e+00 717.0
4 TraesCS6B01G039300 chr6B 79.966 584 95 17 3691 4267 6851887 6852455 1.510000e-110 411.0
5 TraesCS6B01G039300 chr6B 79.310 580 108 11 3691 4267 7100259 7099689 4.240000e-106 396.0
6 TraesCS6B01G039300 chr6B 79.138 580 109 11 3691 4267 7152585 7152015 1.970000e-104 390.0
7 TraesCS6B01G039300 chr6B 79.842 506 76 15 3114 3614 7100872 7100388 4.330000e-91 346.0
8 TraesCS6B01G039300 chr6B 79.842 506 76 15 3114 3614 7106934 7106450 4.330000e-91 346.0
9 TraesCS6B01G039300 chr6B 79.842 506 76 15 3114 3614 7153111 7152627 4.330000e-91 346.0
10 TraesCS6B01G039300 chr6B 88.933 253 28 0 2202 2454 7110190 7109938 4.390000e-81 313.0
11 TraesCS6B01G039300 chr6B 79.245 424 79 8 3691 4113 7109067 7108652 2.660000e-73 287.0
12 TraesCS6B01G039300 chr6B 88.034 117 9 1 5134 5250 23643281 23643392 3.670000e-27 134.0
13 TraesCS6B01G039300 chr6B 88.034 117 9 1 5022 5133 23643393 23643509 3.670000e-27 134.0
14 TraesCS6B01G039300 chr6B 80.583 103 18 2 534 635 346556985 346556884 1.740000e-10 78.7
15 TraesCS6B01G039300 chr6D 95.406 2438 79 10 630 3059 13101768 13099356 0.000000e+00 3851.0
16 TraesCS6B01G039300 chr6D 90.762 1851 131 18 3685 5511 13098484 13096650 0.000000e+00 2435.0
17 TraesCS6B01G039300 chr6D 95.344 451 16 3 3148 3597 13099358 13098912 0.000000e+00 712.0
18 TraesCS6B01G039300 chr6D 80.182 550 99 10 3722 4267 3590515 3591058 2.530000e-108 403.0
19 TraesCS6B01G039300 chr6D 88.095 294 16 4 5554 5836 13096652 13096367 1.210000e-86 331.0
20 TraesCS6B01G039300 chr6D 89.030 237 19 3 296 531 13102002 13101772 2.660000e-73 287.0
21 TraesCS6B01G039300 chr6D 80.049 411 46 21 3209 3614 3590076 3590455 7.450000e-69 272.0
22 TraesCS6B01G039300 chr6D 87.500 112 14 0 5023 5134 13097022 13096911 4.750000e-26 130.0
23 TraesCS6B01G039300 chr6A 94.142 2424 124 10 638 3059 14377475 14375068 0.000000e+00 3674.0
24 TraesCS6B01G039300 chr6A 90.483 2112 146 29 3685 5767 14374576 14372491 0.000000e+00 2736.0
25 TraesCS6B01G039300 chr6A 94.297 491 21 4 3148 3635 14375070 14374584 0.000000e+00 745.0
26 TraesCS6B01G039300 chr6A 82.380 857 136 9 2199 3049 2399877 2400724 0.000000e+00 732.0
27 TraesCS6B01G039300 chr6A 79.927 548 98 10 3726 4267 2401430 2401971 5.480000e-105 392.0
28 TraesCS6B01G039300 chr6A 80.186 429 69 8 3214 3633 2400847 2401268 2.040000e-79 307.0
29 TraesCS6B01G039300 chr6A 87.931 174 15 1 67 234 14377913 14377740 3.570000e-47 200.0
30 TraesCS6B01G039300 chr6A 84.426 122 10 2 5134 5251 14373239 14373123 1.720000e-20 111.0
31 TraesCS6B01G039300 chr6A 80.000 110 18 4 530 637 507117017 507116910 1.740000e-10 78.7
32 TraesCS6B01G039300 chr1A 82.301 113 16 4 526 636 481924526 481924416 1.730000e-15 95.3
33 TraesCS6B01G039300 chr5B 83.168 101 15 2 535 634 68902492 68902393 2.240000e-14 91.6
34 TraesCS6B01G039300 chr7D 82.353 102 16 2 535 635 126648568 126648468 2.900000e-13 87.9
35 TraesCS6B01G039300 chr4B 82.075 106 16 3 530 634 1770218 1770115 2.900000e-13 87.9
36 TraesCS6B01G039300 chr5D 81.633 98 18 0 534 631 447977969 447978066 1.350000e-11 82.4
37 TraesCS6B01G039300 chr1B 80.769 104 15 5 530 631 579000073 579000173 6.270000e-10 76.8
38 TraesCS6B01G039300 chr4A 79.279 111 19 4 528 636 231195321 231195429 2.260000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G039300 chr6B 23638260 23644096 5836 False 3682.666667 10780 92.022667 1 5837 3 chr6B.!!$F2 5836
1 TraesCS6B01G039300 chr6B 6850486 6852455 1969 False 580.000000 749 81.328000 2202 4267 2 chr6B.!!$F1 2065
2 TraesCS6B01G039300 chr6B 7099689 7102015 2326 True 490.000000 728 80.504000 2202 4267 3 chr6B.!!$R2 2065
3 TraesCS6B01G039300 chr6B 7152015 7154254 2239 True 484.333333 717 80.368667 2202 4267 3 chr6B.!!$R4 2065
4 TraesCS6B01G039300 chr6B 7106450 7110190 3740 True 315.333333 346 82.673333 2202 4113 3 chr6B.!!$R3 1911
5 TraesCS6B01G039300 chr6D 13096367 13102002 5635 True 1291.000000 3851 91.022833 296 5836 6 chr6D.!!$R1 5540
6 TraesCS6B01G039300 chr6D 3590076 3591058 982 False 337.500000 403 80.115500 3209 4267 2 chr6D.!!$F1 1058
7 TraesCS6B01G039300 chr6A 14372491 14377913 5422 True 1493.200000 3674 90.255800 67 5767 5 chr6A.!!$R2 5700
8 TraesCS6B01G039300 chr6A 2399877 2401971 2094 False 477.000000 732 80.831000 2199 4267 3 chr6A.!!$F1 2068

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
938 970 0.254638 TCCCTCCTTCCCTCTCCCTA 60.255 60.000 0.00 0.00 0.00 3.53 F
1105 1138 1.067821 TGGTTTCGCCCACATTTGTTC 59.932 47.619 0.00 0.00 36.04 3.18 F
2810 3727 0.109827 TTGATGTTTGGTGCGATGCG 60.110 50.000 0.00 0.00 0.00 4.73 F
2813 3730 0.378257 ATGTTTGGTGCGATGCGATC 59.622 50.000 0.00 0.00 0.00 3.69 F
3676 6542 0.028642 AGGAGGATTACCCATGGCCT 60.029 55.000 6.09 6.93 37.41 5.19 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1813 1846 3.627395 TGGCTGTTTTCTCGATACCAT 57.373 42.857 0.00 0.00 0.0 3.55 R
2877 3794 3.686726 GCACTCCAAATTCGTCTCTGATT 59.313 43.478 0.00 0.00 0.0 2.57 R
3657 6523 0.028642 AGGCCATGGGTAATCCTCCT 60.029 55.000 15.13 5.62 36.2 3.69 R
4203 7239 0.037590 ACTTTCCAGTGGCGGCATTA 59.962 50.000 17.19 0.00 0.0 1.90 R
4932 7986 0.040958 CTTTGACTCGCCACAACAGC 60.041 55.000 0.00 0.00 0.0 4.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 8.986477 ATAGCAAAACACCACATATTCTTTTC 57.014 30.769 0.00 0.00 0.00 2.29
27 28 7.054491 AGCAAAACACCACATATTCTTTTCT 57.946 32.000 0.00 0.00 0.00 2.52
28 29 7.500141 AGCAAAACACCACATATTCTTTTCTT 58.500 30.769 0.00 0.00 0.00 2.52
29 30 8.637986 AGCAAAACACCACATATTCTTTTCTTA 58.362 29.630 0.00 0.00 0.00 2.10
30 31 9.255304 GCAAAACACCACATATTCTTTTCTTAA 57.745 29.630 0.00 0.00 0.00 1.85
44 45 9.793259 ATTCTTTTCTTAAGTTACACCATCTCA 57.207 29.630 1.63 0.00 0.00 3.27
45 46 9.793259 TTCTTTTCTTAAGTTACACCATCTCAT 57.207 29.630 1.63 0.00 0.00 2.90
46 47 9.219603 TCTTTTCTTAAGTTACACCATCTCATG 57.780 33.333 1.63 0.00 0.00 3.07
55 56 2.910205 CCATCTCATGGCAGCGTAG 58.090 57.895 0.00 0.00 44.70 3.51
83 84 7.006509 CACCTATTCCATCTAATCAACCCAAT 58.993 38.462 0.00 0.00 0.00 3.16
112 113 6.690460 GCCCATAGGAGTTCAATGTATGGTTA 60.690 42.308 6.06 0.00 38.92 2.85
113 114 6.710744 CCCATAGGAGTTCAATGTATGGTTAC 59.289 42.308 6.06 0.00 38.92 2.50
119 120 6.316390 GGAGTTCAATGTATGGTTACTTCCAG 59.684 42.308 0.00 0.00 41.05 3.86
126 127 9.265901 CAATGTATGGTTACTTCCAGAATCTAG 57.734 37.037 0.00 0.00 41.05 2.43
129 130 5.957771 TGGTTACTTCCAGAATCTAGCAT 57.042 39.130 0.00 0.00 33.19 3.79
130 131 7.618019 ATGGTTACTTCCAGAATCTAGCATA 57.382 36.000 0.00 0.00 41.05 3.14
155 156 5.655893 ATTTTGTCGCCAAATTGTTGAAG 57.344 34.783 0.00 0.00 40.14 3.02
170 171 9.563748 AAATTGTTGAAGAATTTGGATTCATGT 57.436 25.926 11.58 0.00 43.35 3.21
185 186 7.220740 TGGATTCATGTTAGATATTTGCGGTA 58.779 34.615 0.00 0.00 0.00 4.02
186 187 7.717436 TGGATTCATGTTAGATATTTGCGGTAA 59.283 33.333 0.00 0.00 0.00 2.85
250 280 1.459592 CTTCGGACAACAAGCTTACCG 59.540 52.381 16.37 16.37 41.39 4.02
258 288 3.435671 ACAACAAGCTTACCGAACATAGC 59.564 43.478 0.00 0.00 0.00 2.97
308 338 7.705214 AGCTCGTGAACTAGTACTAATTAAGG 58.295 38.462 3.76 0.00 0.00 2.69
317 347 7.655490 ACTAGTACTAATTAAGGGCATGTACG 58.345 38.462 3.76 0.00 35.40 3.67
318 348 6.475596 AGTACTAATTAAGGGCATGTACGT 57.524 37.500 0.00 0.00 35.40 3.57
319 349 7.587037 AGTACTAATTAAGGGCATGTACGTA 57.413 36.000 0.00 0.00 35.40 3.57
320 350 7.428826 AGTACTAATTAAGGGCATGTACGTAC 58.571 38.462 18.90 18.90 35.40 3.67
327 357 3.267483 AGGGCATGTACGTACAATGTTC 58.733 45.455 30.46 20.89 39.99 3.18
337 367 7.255569 TGTACGTACAATGTTCAGAAGATAGG 58.744 38.462 25.54 0.00 32.40 2.57
436 467 7.684529 AGAGATGACATTTAGGATATGGAACC 58.315 38.462 0.00 0.00 0.00 3.62
441 472 8.837099 TGACATTTAGGATATGGAACCAAAAT 57.163 30.769 0.00 0.00 0.00 1.82
456 487 9.672673 TGGAACCAAAATTTTGTTTTATCTTCA 57.327 25.926 25.25 10.43 36.45 3.02
533 564 9.613428 TTTTTCATTTCTCTCTGTCTTACAAGA 57.387 29.630 0.00 0.00 0.00 3.02
534 565 9.784531 TTTTCATTTCTCTCTGTCTTACAAGAT 57.215 29.630 0.00 0.00 37.39 2.40
548 579 2.695585 ACAAGATACTCCCTCCATCCC 58.304 52.381 0.00 0.00 0.00 3.85
549 580 2.022035 ACAAGATACTCCCTCCATCCCA 60.022 50.000 0.00 0.00 0.00 4.37
550 581 3.048600 CAAGATACTCCCTCCATCCCAA 58.951 50.000 0.00 0.00 0.00 4.12
551 582 3.438131 AGATACTCCCTCCATCCCAAA 57.562 47.619 0.00 0.00 0.00 3.28
554 585 5.486332 AGATACTCCCTCCATCCCAAAATA 58.514 41.667 0.00 0.00 0.00 1.40
555 586 5.917087 AGATACTCCCTCCATCCCAAAATAA 59.083 40.000 0.00 0.00 0.00 1.40
556 587 4.526438 ACTCCCTCCATCCCAAAATAAG 57.474 45.455 0.00 0.00 0.00 1.73
557 588 3.858638 ACTCCCTCCATCCCAAAATAAGT 59.141 43.478 0.00 0.00 0.00 2.24
558 589 4.210331 CTCCCTCCATCCCAAAATAAGTG 58.790 47.826 0.00 0.00 0.00 3.16
559 590 3.855599 TCCCTCCATCCCAAAATAAGTGA 59.144 43.478 0.00 0.00 0.00 3.41
560 591 3.954258 CCCTCCATCCCAAAATAAGTGAC 59.046 47.826 0.00 0.00 0.00 3.67
561 592 3.627577 CCTCCATCCCAAAATAAGTGACG 59.372 47.826 0.00 0.00 0.00 4.35
562 593 4.261801 CTCCATCCCAAAATAAGTGACGT 58.738 43.478 0.00 0.00 0.00 4.34
563 594 4.006989 TCCATCCCAAAATAAGTGACGTG 58.993 43.478 0.00 0.00 0.00 4.49
564 595 3.128589 CCATCCCAAAATAAGTGACGTGG 59.871 47.826 0.00 0.00 0.00 4.94
565 596 2.785562 TCCCAAAATAAGTGACGTGGG 58.214 47.619 0.00 0.00 46.01 4.61
566 597 2.106857 TCCCAAAATAAGTGACGTGGGT 59.893 45.455 0.00 0.00 45.07 4.51
567 598 2.888414 CCCAAAATAAGTGACGTGGGTT 59.112 45.455 0.00 0.00 40.76 4.11
568 599 3.319689 CCCAAAATAAGTGACGTGGGTTT 59.680 43.478 0.00 0.00 40.76 3.27
569 600 4.519730 CCCAAAATAAGTGACGTGGGTTTA 59.480 41.667 0.00 0.00 40.76 2.01
570 601 5.335348 CCCAAAATAAGTGACGTGGGTTTAG 60.335 44.000 0.00 0.00 40.76 1.85
571 602 5.239963 CCAAAATAAGTGACGTGGGTTTAGT 59.760 40.000 0.00 0.00 0.00 2.24
572 603 6.238814 CCAAAATAAGTGACGTGGGTTTAGTT 60.239 38.462 0.00 0.00 0.00 2.24
573 604 6.549912 AAATAAGTGACGTGGGTTTAGTTC 57.450 37.500 0.00 0.00 0.00 3.01
574 605 3.547054 AAGTGACGTGGGTTTAGTTCA 57.453 42.857 0.00 0.00 0.00 3.18
575 606 3.547054 AGTGACGTGGGTTTAGTTCAA 57.453 42.857 0.00 0.00 0.00 2.69
576 607 3.876341 AGTGACGTGGGTTTAGTTCAAA 58.124 40.909 0.00 0.00 0.00 2.69
577 608 4.457466 AGTGACGTGGGTTTAGTTCAAAT 58.543 39.130 0.00 0.00 0.00 2.32
578 609 4.885325 AGTGACGTGGGTTTAGTTCAAATT 59.115 37.500 0.00 0.00 0.00 1.82
579 610 5.358725 AGTGACGTGGGTTTAGTTCAAATTT 59.641 36.000 0.00 0.00 0.00 1.82
580 611 5.457473 GTGACGTGGGTTTAGTTCAAATTTG 59.543 40.000 12.15 12.15 0.00 2.32
581 612 5.357314 TGACGTGGGTTTAGTTCAAATTTGA 59.643 36.000 16.91 16.91 34.92 2.69
582 613 6.127703 TGACGTGGGTTTAGTTCAAATTTGAA 60.128 34.615 26.01 26.01 44.31 2.69
618 649 8.166422 ACTAAACTCACTTCACTTATTTTGGG 57.834 34.615 0.00 0.00 0.00 4.12
619 650 7.996644 ACTAAACTCACTTCACTTATTTTGGGA 59.003 33.333 0.00 0.00 0.00 4.37
620 651 6.635030 AACTCACTTCACTTATTTTGGGAC 57.365 37.500 0.00 0.00 0.00 4.46
621 652 4.755123 ACTCACTTCACTTATTTTGGGACG 59.245 41.667 0.00 0.00 0.00 4.79
622 653 4.069304 TCACTTCACTTATTTTGGGACGG 58.931 43.478 0.00 0.00 0.00 4.79
623 654 4.069304 CACTTCACTTATTTTGGGACGGA 58.931 43.478 0.00 0.00 0.00 4.69
624 655 4.154195 CACTTCACTTATTTTGGGACGGAG 59.846 45.833 0.00 0.00 0.00 4.63
625 656 3.343941 TCACTTATTTTGGGACGGAGG 57.656 47.619 0.00 0.00 0.00 4.30
626 657 2.026636 TCACTTATTTTGGGACGGAGGG 60.027 50.000 0.00 0.00 0.00 4.30
627 658 2.026636 CACTTATTTTGGGACGGAGGGA 60.027 50.000 0.00 0.00 0.00 4.20
628 659 2.238898 ACTTATTTTGGGACGGAGGGAG 59.761 50.000 0.00 0.00 0.00 4.30
676 708 6.513180 TCATCACTAAACGAAAGAAGACTGT 58.487 36.000 0.00 0.00 0.00 3.55
691 723 5.129485 AGAAGACTGTGATATCATCCCGTTT 59.871 40.000 9.02 0.35 0.00 3.60
694 726 6.516718 AGACTGTGATATCATCCCGTTTTAG 58.483 40.000 9.02 0.30 0.00 1.85
702 734 2.568062 TCATCCCGTTTTAGGTGCACTA 59.432 45.455 17.98 4.35 0.00 2.74
736 768 3.415087 ATGCTCCAGAGGGCCCAC 61.415 66.667 27.56 19.83 0.00 4.61
765 797 5.615925 TCAGCCTTTACCTATTTCTCTCC 57.384 43.478 0.00 0.00 0.00 3.71
766 798 4.099573 TCAGCCTTTACCTATTTCTCTCCG 59.900 45.833 0.00 0.00 0.00 4.63
779 811 0.321671 CTCTCCGAACCTTTGCCTCA 59.678 55.000 0.00 0.00 0.00 3.86
792 824 0.537143 TGCCTCATTTGCTCCGTTGT 60.537 50.000 0.00 0.00 0.00 3.32
884 916 0.468226 AAGGTGGAGCACAAGACGAA 59.532 50.000 0.00 0.00 35.86 3.85
938 970 0.254638 TCCCTCCTTCCCTCTCCCTA 60.255 60.000 0.00 0.00 0.00 3.53
1036 1069 2.825387 GCATCTCCACATGCGGCA 60.825 61.111 4.58 4.58 39.92 5.69
1071 1104 2.762327 TCCTACCGTATTCTCCACCAAC 59.238 50.000 0.00 0.00 0.00 3.77
1105 1138 1.067821 TGGTTTCGCCCACATTTGTTC 59.932 47.619 0.00 0.00 36.04 3.18
1171 1204 2.677573 AAACGCCGCAAAGGAACTGC 62.678 55.000 0.00 0.00 45.00 4.40
1191 1224 2.562298 GCATTTCAACAAGGATGGGTCA 59.438 45.455 0.00 0.00 0.00 4.02
1224 1257 4.641396 AGCTGCAAGTGAGTTGTACAATA 58.359 39.130 12.26 0.00 38.55 1.90
1235 1268 8.548877 AGTGAGTTGTACAATATAATCACCCTT 58.451 33.333 22.90 11.99 37.18 3.95
1273 1306 9.719279 GCTACTATATATCGTCTATGTTGTTCC 57.281 37.037 0.00 0.00 0.00 3.62
1314 1347 6.912203 TGCCAATTTCTGATTGCATATTTG 57.088 33.333 0.00 0.00 0.00 2.32
1396 1429 2.737252 GACGGAATGTTGTCCTTGAGAC 59.263 50.000 0.00 0.00 46.51 3.36
1452 1485 5.173664 GTGTTACGGTAGCAAAAGAGGTAT 58.826 41.667 6.26 0.00 0.00 2.73
1502 1535 8.627403 CATGCAATCCTAATGTAAGTTGAATCT 58.373 33.333 0.00 0.00 0.00 2.40
1503 1536 8.579850 TGCAATCCTAATGTAAGTTGAATCTT 57.420 30.769 0.00 0.00 0.00 2.40
1521 1554 7.939782 TGAATCTTTGCTATGAACTTTTGTCA 58.060 30.769 0.00 0.00 0.00 3.58
1534 1567 6.040278 TGAACTTTTGTCATTGTTGGCTATCA 59.960 34.615 0.00 0.00 0.00 2.15
1558 1591 1.183549 GGTTGAGCTCGAAGACCCTA 58.816 55.000 4.86 0.00 0.00 3.53
1593 1626 2.760650 AGCTAAATTGGTTAGGCAAGCC 59.239 45.455 2.02 2.02 39.82 4.35
1665 1698 3.278668 CTTGCTCAAGGGATGATCACT 57.721 47.619 0.00 0.00 34.08 3.41
1813 1846 3.433598 GCTAATCCAGTACAGATTGCCCA 60.434 47.826 17.06 1.78 35.59 5.36
2085 2118 4.999950 GCCCTAACTACCATTCATGAGATG 59.000 45.833 0.00 3.45 0.00 2.90
2094 2127 3.567164 CCATTCATGAGATGTTAGCCCAC 59.433 47.826 13.37 0.00 0.00 4.61
2115 2148 4.946157 CACTGTTATCATTTTCAGGAGCCT 59.054 41.667 0.00 0.00 32.92 4.58
2116 2149 5.065731 CACTGTTATCATTTTCAGGAGCCTC 59.934 44.000 0.00 0.00 32.92 4.70
2484 2526 2.731976 GTCTTGGCAGTTCGTCTACTTG 59.268 50.000 0.00 0.00 0.00 3.16
2494 2536 6.561717 GCAGTTCGTCTACTTGTTTCAGTTAC 60.562 42.308 0.00 0.00 0.00 2.50
2808 3725 1.621107 GCTTGATGTTTGGTGCGATG 58.379 50.000 0.00 0.00 0.00 3.84
2809 3726 1.621107 CTTGATGTTTGGTGCGATGC 58.379 50.000 0.00 0.00 0.00 3.91
2810 3727 0.109827 TTGATGTTTGGTGCGATGCG 60.110 50.000 0.00 0.00 0.00 4.73
2811 3728 0.952984 TGATGTTTGGTGCGATGCGA 60.953 50.000 0.00 0.00 0.00 5.10
2813 3730 0.378257 ATGTTTGGTGCGATGCGATC 59.622 50.000 0.00 0.00 0.00 3.69
2814 3731 0.952984 TGTTTGGTGCGATGCGATCA 60.953 50.000 0.00 0.00 0.00 2.92
2877 3794 5.419542 GTCATTCTTCATGTAGGCACTGTA 58.580 41.667 0.00 0.00 41.52 2.74
2904 3821 2.301870 AGACGAATTTGGAGTGCCACTA 59.698 45.455 0.00 0.00 45.94 2.74
3054 5290 5.994054 CCAGATTGAGGTCTGTATATTGTGG 59.006 44.000 3.54 0.00 43.22 4.17
3059 5295 5.977635 TGAGGTCTGTATATTGTGGACTTG 58.022 41.667 0.00 0.00 0.00 3.16
3094 5338 9.797556 CGTTTCCATATCCTATATAATTGTCGA 57.202 33.333 0.00 0.00 0.00 4.20
3128 5600 4.202223 TGTTCTAGTTTTTCTCACGGCTCT 60.202 41.667 0.00 0.00 0.00 4.09
3129 5601 4.602340 TCTAGTTTTTCTCACGGCTCTT 57.398 40.909 0.00 0.00 0.00 2.85
3138 5610 3.154710 TCTCACGGCTCTTCTCTGTTTA 58.845 45.455 0.00 0.00 0.00 2.01
3141 5613 2.854777 CACGGCTCTTCTCTGTTTATCG 59.145 50.000 0.00 0.00 0.00 2.92
3174 5646 4.646040 TGGATGCTCCATTTTTCCAGTATG 59.354 41.667 1.25 0.00 42.67 2.39
3184 5656 9.391006 TCCATTTTTCCAGTATGTATAGTTCAC 57.609 33.333 0.00 0.00 0.00 3.18
3513 5994 1.143305 CACAGACTGAAACCGAGCTG 58.857 55.000 10.08 0.00 0.00 4.24
3573 6054 4.988540 GCAACAAAGGTAATGTTTTCTCCC 59.011 41.667 0.00 0.00 38.90 4.30
3614 6475 1.904287 TGGGATTTGTGTACCTGTGC 58.096 50.000 0.00 0.00 0.00 4.57
3635 6501 2.695666 CGAATTCAGAGGGCCTTCTAGA 59.304 50.000 18.32 14.11 0.00 2.43
3637 6503 3.697190 ATTCAGAGGGCCTTCTAGAGA 57.303 47.619 18.32 8.21 0.00 3.10
3638 6504 3.474798 TTCAGAGGGCCTTCTAGAGAA 57.525 47.619 18.32 13.98 0.00 2.87
3639 6505 2.741145 TCAGAGGGCCTTCTAGAGAAC 58.259 52.381 18.32 0.00 0.00 3.01
3640 6506 2.313342 TCAGAGGGCCTTCTAGAGAACT 59.687 50.000 18.32 0.00 0.00 3.01
3641 6507 2.430332 CAGAGGGCCTTCTAGAGAACTG 59.570 54.545 18.32 2.73 0.00 3.16
3642 6508 2.043801 AGAGGGCCTTCTAGAGAACTGT 59.956 50.000 17.19 0.00 0.00 3.55
3643 6509 2.167487 GAGGGCCTTCTAGAGAACTGTG 59.833 54.545 7.89 0.00 0.00 3.66
3644 6510 1.406205 GGGCCTTCTAGAGAACTGTGC 60.406 57.143 0.84 0.00 0.00 4.57
3645 6511 1.552792 GGCCTTCTAGAGAACTGTGCT 59.447 52.381 0.00 0.00 0.00 4.40
3646 6512 2.027653 GGCCTTCTAGAGAACTGTGCTT 60.028 50.000 0.00 0.00 0.00 3.91
3647 6513 3.558109 GGCCTTCTAGAGAACTGTGCTTT 60.558 47.826 0.00 0.00 0.00 3.51
3648 6514 4.068599 GCCTTCTAGAGAACTGTGCTTTT 58.931 43.478 0.00 0.00 0.00 2.27
3649 6515 4.517075 GCCTTCTAGAGAACTGTGCTTTTT 59.483 41.667 0.00 0.00 0.00 1.94
3670 6536 2.553464 TCCGAAAAGGAGGATTACCCA 58.447 47.619 0.00 0.00 45.98 4.51
3671 6537 3.120108 TCCGAAAAGGAGGATTACCCAT 58.880 45.455 0.00 0.00 45.98 4.00
3672 6538 3.118038 TCCGAAAAGGAGGATTACCCATG 60.118 47.826 0.00 0.00 45.98 3.66
3673 6539 3.214328 CGAAAAGGAGGATTACCCATGG 58.786 50.000 4.14 4.14 37.41 3.66
3674 6540 2.755952 AAAGGAGGATTACCCATGGC 57.244 50.000 6.09 0.00 37.41 4.40
3675 6541 0.853530 AAGGAGGATTACCCATGGCC 59.146 55.000 6.09 1.00 37.41 5.36
3676 6542 0.028642 AGGAGGATTACCCATGGCCT 60.029 55.000 6.09 6.93 37.41 5.19
3677 6543 0.402121 GGAGGATTACCCATGGCCTC 59.598 60.000 21.26 21.26 43.40 4.70
3678 6544 1.439543 GAGGATTACCCATGGCCTCT 58.560 55.000 21.82 7.72 41.44 3.69
3679 6545 1.072965 GAGGATTACCCATGGCCTCTG 59.927 57.143 21.82 5.86 41.44 3.35
3689 6555 2.419297 CCATGGCCTCTGACTGTAGAAC 60.419 54.545 3.32 0.00 0.00 3.01
3706 6621 7.171678 ACTGTAGAACTGTGCTGATTTTACTTC 59.828 37.037 0.00 0.00 0.00 3.01
3707 6622 7.217200 TGTAGAACTGTGCTGATTTTACTTCT 58.783 34.615 0.00 0.00 0.00 2.85
3708 6623 8.364894 TGTAGAACTGTGCTGATTTTACTTCTA 58.635 33.333 0.00 0.00 0.00 2.10
3709 6624 9.204570 GTAGAACTGTGCTGATTTTACTTCTAA 57.795 33.333 0.00 0.00 0.00 2.10
3710 6625 8.854614 AGAACTGTGCTGATTTTACTTCTAAT 57.145 30.769 0.00 0.00 0.00 1.73
3759 6790 6.645790 TCCTACGATAATTGACTACTTCCC 57.354 41.667 0.00 0.00 0.00 3.97
3805 6836 1.270947 GGTATTGTTGTCGGTGGTGGA 60.271 52.381 0.00 0.00 0.00 4.02
3879 6910 8.206867 CCTTGAGAATGATGAACAGAAGGTATA 58.793 37.037 0.00 0.00 0.00 1.47
3882 6913 9.958180 TGAGAATGATGAACAGAAGGTATAAAA 57.042 29.630 0.00 0.00 0.00 1.52
3889 6921 9.612620 GATGAACAGAAGGTATAAAACAAAGTG 57.387 33.333 0.00 0.00 0.00 3.16
3902 6934 8.868522 ATAAAACAAAGTGAATGAGATCCTCA 57.131 30.769 0.00 0.00 44.99 3.86
3912 6944 2.283298 TGAGATCCTCATTCGCAAAGC 58.717 47.619 0.00 0.00 35.39 3.51
3917 6949 1.806542 TCCTCATTCGCAAAGCTTCAC 59.193 47.619 0.00 0.00 0.00 3.18
3919 6951 2.413765 CCTCATTCGCAAAGCTTCACTG 60.414 50.000 0.00 0.00 0.00 3.66
3925 6957 3.059884 TCGCAAAGCTTCACTGTTAGAG 58.940 45.455 0.00 0.00 0.00 2.43
3927 6959 3.120854 CGCAAAGCTTCACTGTTAGAGTC 60.121 47.826 0.00 0.00 29.75 3.36
3962 6996 4.340950 TCAAGGTGTTGTTTTCTTCCATCC 59.659 41.667 0.00 0.00 34.98 3.51
3966 7000 4.368315 GTGTTGTTTTCTTCCATCCCAAC 58.632 43.478 0.00 0.00 33.23 3.77
3969 7003 3.146066 TGTTTTCTTCCATCCCAACGAG 58.854 45.455 0.00 0.00 0.00 4.18
3976 7010 1.416401 TCCATCCCAACGAGCTAATCC 59.584 52.381 0.00 0.00 0.00 3.01
4012 7046 2.896685 CAAGGTTGGGGCTGAAATTGTA 59.103 45.455 0.00 0.00 0.00 2.41
4036 7070 4.468153 AGGAAGTCCTTGAGTTATCCACTC 59.532 45.833 0.00 0.00 46.09 3.51
4091 7125 5.351740 GGCAGTGTAGTTATTGAGAAGGTTC 59.648 44.000 0.00 0.00 0.00 3.62
4113 7147 6.060028 TCGGAACTCAAATTTGTTCTCAAG 57.940 37.500 17.47 9.08 41.42 3.02
4118 7152 7.327032 GGAACTCAAATTTGTTCTCAAGTATGC 59.673 37.037 17.47 6.31 41.42 3.14
4138 7172 9.123902 AGTATGCATTTGATATTCAGCAACTTA 57.876 29.630 3.54 0.00 30.62 2.24
4139 7173 9.173939 GTATGCATTTGATATTCAGCAACTTAC 57.826 33.333 3.54 0.00 30.62 2.34
4212 7248 2.747446 CAGGTATGGTTATAATGCCGCC 59.253 50.000 0.00 0.00 35.18 6.13
4215 7251 2.656947 ATGGTTATAATGCCGCCACT 57.343 45.000 0.00 0.00 31.47 4.00
4248 7284 2.555757 GGATTTGATGGCTGCTGGTATC 59.444 50.000 0.00 0.17 0.00 2.24
4301 7337 2.918131 GCAATGTTCTCTTTGACCACGC 60.918 50.000 0.00 0.00 32.65 5.34
4410 7447 1.091537 TTGTCGGGAAATGGCGATTC 58.908 50.000 0.00 0.00 0.00 2.52
4411 7448 0.035915 TGTCGGGAAATGGCGATTCA 60.036 50.000 0.00 0.00 0.00 2.57
4412 7449 1.091537 GTCGGGAAATGGCGATTCAA 58.908 50.000 0.00 0.00 0.00 2.69
4415 7452 1.856802 GGGAAATGGCGATTCAATGC 58.143 50.000 0.00 0.00 0.00 3.56
4418 7455 3.524541 GGAAATGGCGATTCAATGCTTT 58.475 40.909 0.00 0.00 0.00 3.51
4425 7462 4.402155 TGGCGATTCAATGCTTTTCCTAAT 59.598 37.500 0.00 0.00 0.00 1.73
4428 7465 5.807011 GCGATTCAATGCTTTTCCTAATTGT 59.193 36.000 0.00 0.00 32.92 2.71
4429 7466 6.972328 GCGATTCAATGCTTTTCCTAATTGTA 59.028 34.615 0.00 0.00 32.92 2.41
4430 7467 7.649306 GCGATTCAATGCTTTTCCTAATTGTAT 59.351 33.333 0.00 0.00 32.92 2.29
4470 7518 6.840705 AGACATTAAGCATGGAACCCATAAAT 59.159 34.615 0.00 0.00 43.15 1.40
4501 7552 4.994852 TGACCAGTTTGATAAGACCTTTCG 59.005 41.667 0.00 0.00 0.00 3.46
4505 7556 5.932303 CCAGTTTGATAAGACCTTTCGAAGA 59.068 40.000 0.00 0.00 0.00 2.87
4507 7558 6.868864 CAGTTTGATAAGACCTTTCGAAGAGA 59.131 38.462 0.00 0.00 38.43 3.10
4518 7569 6.801575 ACCTTTCGAAGAGAGATTCTATGTC 58.198 40.000 0.00 0.00 41.78 3.06
4529 7580 7.673926 AGAGAGATTCTATGTCCCTCCTTATTC 59.326 40.741 0.00 0.00 33.23 1.75
4530 7581 7.309091 AGAGATTCTATGTCCCTCCTTATTCA 58.691 38.462 0.00 0.00 0.00 2.57
4533 7584 6.884472 TTCTATGTCCCTCCTTATTCACAA 57.116 37.500 0.00 0.00 0.00 3.33
4534 7585 7.451731 TTCTATGTCCCTCCTTATTCACAAT 57.548 36.000 0.00 0.00 0.00 2.71
4541 7592 6.763610 GTCCCTCCTTATTCACAATCAACTAG 59.236 42.308 0.00 0.00 0.00 2.57
4664 7715 2.095263 CGGTGGCGAAAACTTTCATCAT 60.095 45.455 3.28 0.00 37.01 2.45
4722 7773 1.034838 GTGCACCTGTTGTGAACCCA 61.035 55.000 5.22 0.00 46.44 4.51
4891 7945 2.269172 CAGCATGCTATATCAGAGGCG 58.731 52.381 22.19 0.00 0.00 5.52
4974 8031 5.861787 AGCCGCAATGAATAGTTTGTTTTAC 59.138 36.000 0.00 0.00 0.00 2.01
5003 8062 6.583806 CCTAAAAGTGAATGATGAAGTTGCAC 59.416 38.462 0.00 0.00 0.00 4.57
5012 8071 5.484173 TGATGAAGTTGCACGGAATATTC 57.516 39.130 6.93 6.93 0.00 1.75
5117 8180 8.627208 CCATATATGGCTTTGATACACTCTTT 57.373 34.615 18.77 0.00 41.75 2.52
5133 8196 3.632145 ACTCTTTGCATGAAAGGTTTCGT 59.368 39.130 13.94 0.00 41.43 3.85
5138 8201 8.050778 TCTTTGCATGAAAGGTTTCGTAATAT 57.949 30.769 13.94 0.00 41.43 1.28
5152 8215 7.094933 GGTTTCGTAATATTCACAGTTGTTCCT 60.095 37.037 0.00 0.00 0.00 3.36
5153 8216 7.972832 TTCGTAATATTCACAGTTGTTCCTT 57.027 32.000 0.00 0.00 0.00 3.36
5154 8217 7.972832 TCGTAATATTCACAGTTGTTCCTTT 57.027 32.000 0.00 0.00 0.00 3.11
5155 8218 9.491675 TTCGTAATATTCACAGTTGTTCCTTTA 57.508 29.630 0.00 0.00 0.00 1.85
5156 8219 9.491675 TCGTAATATTCACAGTTGTTCCTTTAA 57.508 29.630 0.00 0.00 0.00 1.52
5224 8287 7.219322 TGATGATGTTTCATATCTGGATTCGT 58.781 34.615 0.00 0.00 42.73 3.85
5359 8423 2.567615 TGCTTTCAGACTAGAAGGGTCC 59.432 50.000 0.00 0.00 34.56 4.46
5369 8433 2.526873 AAGGGTCCGAGGCAGTGT 60.527 61.111 0.00 0.00 0.00 3.55
5396 8460 5.959594 TCCAATGTCTCCCATCATTTTCAAT 59.040 36.000 0.00 0.00 32.85 2.57
5415 8479 7.428282 TTCAATCTTGTCGCTAACATGTTAA 57.572 32.000 18.55 4.59 37.82 2.01
5432 8496 6.830324 ACATGTTAACTATCCTCATTGCACAT 59.170 34.615 7.22 0.00 0.00 3.21
5433 8497 6.682423 TGTTAACTATCCTCATTGCACATG 57.318 37.500 7.22 0.00 0.00 3.21
5440 8504 1.406539 CCTCATTGCACATGGGCTAAC 59.593 52.381 22.81 0.00 34.04 2.34
5474 8538 5.406767 ACTTAGTAGACTTACGCATCTCG 57.593 43.478 0.00 0.00 45.38 4.04
5650 8714 1.475403 CTTCGGTCAGGCTAAGGAGA 58.525 55.000 0.00 0.00 0.00 3.71
5667 8734 7.172361 GCTAAGGAGATTGAGGACAAATATGAC 59.828 40.741 0.00 0.00 39.54 3.06
5671 8738 8.428063 AGGAGATTGAGGACAAATATGACTTAG 58.572 37.037 0.00 0.00 39.54 2.18
5702 8769 5.569227 GCAAGTCATGATTTTTCCCATTCCA 60.569 40.000 0.00 0.00 0.00 3.53
5734 8801 3.230976 ACCCCTGTTCATTTCTGGAAAC 58.769 45.455 0.00 0.00 32.51 2.78
5741 8815 4.991056 TGTTCATTTCTGGAAACTCTCGAG 59.009 41.667 5.93 5.93 32.51 4.04
5806 8882 1.045407 TAGCTGGAACGGTGAGTTGT 58.955 50.000 0.00 0.00 44.35 3.32
5836 8912 5.292101 GGAGGACGACTTGTTCTTATCAATG 59.708 44.000 0.00 0.00 36.16 2.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 8.806146 AGAAAAGAATATGTGGTGTTTTGCTAT 58.194 29.630 0.00 0.00 0.00 2.97
2 3 8.177119 AGAAAAGAATATGTGGTGTTTTGCTA 57.823 30.769 0.00 0.00 0.00 3.49
3 4 7.054491 AGAAAAGAATATGTGGTGTTTTGCT 57.946 32.000 0.00 0.00 0.00 3.91
4 5 7.713764 AAGAAAAGAATATGTGGTGTTTTGC 57.286 32.000 0.00 0.00 0.00 3.68
18 19 9.793259 TGAGATGGTGTAACTTAAGAAAAGAAT 57.207 29.630 10.09 0.00 36.74 2.40
19 20 9.793259 ATGAGATGGTGTAACTTAAGAAAAGAA 57.207 29.630 10.09 0.00 36.74 2.52
20 21 9.219603 CATGAGATGGTGTAACTTAAGAAAAGA 57.780 33.333 10.09 0.00 36.74 2.52
21 22 8.454106 CCATGAGATGGTGTAACTTAAGAAAAG 58.546 37.037 10.09 0.00 45.54 2.27
22 23 8.335532 CCATGAGATGGTGTAACTTAAGAAAA 57.664 34.615 10.09 0.00 45.54 2.29
23 24 7.921786 CCATGAGATGGTGTAACTTAAGAAA 57.078 36.000 10.09 0.00 45.54 2.52
38 39 0.249784 AGCTACGCTGCCATGAGATG 60.250 55.000 0.00 0.00 37.57 2.90
39 40 0.033228 GAGCTACGCTGCCATGAGAT 59.967 55.000 0.00 0.00 39.88 2.75
40 41 1.322538 TGAGCTACGCTGCCATGAGA 61.323 55.000 0.00 0.00 39.88 3.27
41 42 1.142531 TGAGCTACGCTGCCATGAG 59.857 57.895 0.00 0.00 39.88 2.90
42 43 1.153568 GTGAGCTACGCTGCCATGA 60.154 57.895 0.00 0.00 39.88 3.07
43 44 2.176273 GGTGAGCTACGCTGCCATG 61.176 63.158 0.00 0.00 39.88 3.66
44 45 1.043116 TAGGTGAGCTACGCTGCCAT 61.043 55.000 0.00 0.00 39.88 4.40
45 46 1.043116 ATAGGTGAGCTACGCTGCCA 61.043 55.000 0.00 0.00 39.88 4.92
46 47 0.105039 AATAGGTGAGCTACGCTGCC 59.895 55.000 0.00 0.00 39.88 4.85
47 48 1.492720 GAATAGGTGAGCTACGCTGC 58.507 55.000 0.00 0.00 39.88 5.25
48 49 1.409064 TGGAATAGGTGAGCTACGCTG 59.591 52.381 0.00 0.00 39.88 5.18
49 50 1.776662 TGGAATAGGTGAGCTACGCT 58.223 50.000 0.00 0.00 43.88 5.07
50 51 2.297597 AGATGGAATAGGTGAGCTACGC 59.702 50.000 0.00 0.00 0.00 4.42
51 52 5.707242 TTAGATGGAATAGGTGAGCTACG 57.293 43.478 0.00 0.00 0.00 3.51
52 53 7.233389 TGATTAGATGGAATAGGTGAGCTAC 57.767 40.000 0.00 0.00 0.00 3.58
53 54 7.256332 GGTTGATTAGATGGAATAGGTGAGCTA 60.256 40.741 0.00 0.00 0.00 3.32
54 55 6.465035 GGTTGATTAGATGGAATAGGTGAGCT 60.465 42.308 0.00 0.00 0.00 4.09
55 56 5.703130 GGTTGATTAGATGGAATAGGTGAGC 59.297 44.000 0.00 0.00 0.00 4.26
56 57 6.183361 TGGGTTGATTAGATGGAATAGGTGAG 60.183 42.308 0.00 0.00 0.00 3.51
57 58 5.669904 TGGGTTGATTAGATGGAATAGGTGA 59.330 40.000 0.00 0.00 0.00 4.02
58 59 5.940617 TGGGTTGATTAGATGGAATAGGTG 58.059 41.667 0.00 0.00 0.00 4.00
59 60 6.590656 TTGGGTTGATTAGATGGAATAGGT 57.409 37.500 0.00 0.00 0.00 3.08
60 61 6.660949 GGATTGGGTTGATTAGATGGAATAGG 59.339 42.308 0.00 0.00 0.00 2.57
61 62 7.233632 TGGATTGGGTTGATTAGATGGAATAG 58.766 38.462 0.00 0.00 0.00 1.73
62 63 7.160457 TGGATTGGGTTGATTAGATGGAATA 57.840 36.000 0.00 0.00 0.00 1.75
63 64 6.029492 TGGATTGGGTTGATTAGATGGAAT 57.971 37.500 0.00 0.00 0.00 3.01
64 65 5.448654 CTGGATTGGGTTGATTAGATGGAA 58.551 41.667 0.00 0.00 0.00 3.53
65 66 4.689705 GCTGGATTGGGTTGATTAGATGGA 60.690 45.833 0.00 0.00 0.00 3.41
83 84 1.965414 TTGAACTCCTATGGGCTGGA 58.035 50.000 0.00 0.00 0.00 3.86
119 120 7.806690 TGGCGACAAAATTATATGCTAGATTC 58.193 34.615 0.00 0.00 37.44 2.52
167 168 6.003950 AGGCATTACCGCAAATATCTAACAT 58.996 36.000 0.00 0.00 46.52 2.71
170 171 5.373222 ACAGGCATTACCGCAAATATCTAA 58.627 37.500 0.00 0.00 46.52 2.10
185 186 2.280628 GAGCGCTAGTTAACAGGCATT 58.719 47.619 11.50 8.76 0.00 3.56
186 187 1.207089 TGAGCGCTAGTTAACAGGCAT 59.793 47.619 11.50 9.29 0.00 4.40
234 241 2.215196 TGTTCGGTAAGCTTGTTGTCC 58.785 47.619 9.86 3.09 0.00 4.02
236 243 3.435671 GCTATGTTCGGTAAGCTTGTTGT 59.564 43.478 9.86 0.00 32.18 3.32
238 245 2.671396 CGCTATGTTCGGTAAGCTTGTT 59.329 45.455 9.86 0.00 32.73 2.83
250 280 1.920762 GCTCGTGCTCGCTATGTTC 59.079 57.895 2.69 0.00 36.96 3.18
285 315 6.916932 GCCCTTAATTAGTACTAGTTCACGAG 59.083 42.308 13.36 8.24 0.00 4.18
286 316 6.377996 TGCCCTTAATTAGTACTAGTTCACGA 59.622 38.462 13.36 0.00 0.00 4.35
287 317 6.567050 TGCCCTTAATTAGTACTAGTTCACG 58.433 40.000 13.36 4.64 0.00 4.35
289 319 8.086143 ACATGCCCTTAATTAGTACTAGTTCA 57.914 34.615 13.36 6.46 0.00 3.18
290 320 9.473640 GTACATGCCCTTAATTAGTACTAGTTC 57.526 37.037 13.36 0.00 0.00 3.01
291 321 8.139989 CGTACATGCCCTTAATTAGTACTAGTT 58.860 37.037 14.28 14.28 0.00 2.24
292 322 7.286316 ACGTACATGCCCTTAATTAGTACTAGT 59.714 37.037 0.00 0.00 0.00 2.57
293 323 7.655490 ACGTACATGCCCTTAATTAGTACTAG 58.345 38.462 2.23 0.00 0.00 2.57
308 338 3.930229 TCTGAACATTGTACGTACATGCC 59.070 43.478 27.82 19.93 35.89 4.40
317 347 7.240414 GAAGCCTATCTTCTGAACATTGTAC 57.760 40.000 0.00 0.00 45.99 2.90
337 367 1.139853 ACGGGGATGATCAAGAGAAGC 59.860 52.381 0.00 0.00 0.00 3.86
430 461 9.672673 TGAAGATAAAACAAAATTTTGGTTCCA 57.327 25.926 29.26 21.41 46.59 3.53
521 552 4.956700 TGGAGGGAGTATCTTGTAAGACAG 59.043 45.833 0.00 0.00 37.98 3.51
523 554 5.011227 GGATGGAGGGAGTATCTTGTAAGAC 59.989 48.000 0.00 0.00 37.98 3.01
531 562 3.438131 TTTGGGATGGAGGGAGTATCT 57.562 47.619 0.00 0.00 33.73 1.98
533 564 5.676811 ACTTATTTTGGGATGGAGGGAGTAT 59.323 40.000 0.00 0.00 0.00 2.12
534 565 5.043762 ACTTATTTTGGGATGGAGGGAGTA 58.956 41.667 0.00 0.00 0.00 2.59
535 566 3.858638 ACTTATTTTGGGATGGAGGGAGT 59.141 43.478 0.00 0.00 0.00 3.85
548 579 6.308371 ACTAAACCCACGTCACTTATTTTG 57.692 37.500 0.00 0.00 0.00 2.44
549 580 6.543100 TGAACTAAACCCACGTCACTTATTTT 59.457 34.615 0.00 0.00 0.00 1.82
550 581 6.056884 TGAACTAAACCCACGTCACTTATTT 58.943 36.000 0.00 0.00 0.00 1.40
551 582 5.613329 TGAACTAAACCCACGTCACTTATT 58.387 37.500 0.00 0.00 0.00 1.40
554 585 3.547054 TGAACTAAACCCACGTCACTT 57.453 42.857 0.00 0.00 0.00 3.16
555 586 3.547054 TTGAACTAAACCCACGTCACT 57.453 42.857 0.00 0.00 0.00 3.41
556 587 4.823790 ATTTGAACTAAACCCACGTCAC 57.176 40.909 0.00 0.00 0.00 3.67
557 588 5.357314 TCAAATTTGAACTAAACCCACGTCA 59.643 36.000 18.45 0.00 33.55 4.35
558 589 5.823353 TCAAATTTGAACTAAACCCACGTC 58.177 37.500 18.45 0.00 33.55 4.34
559 590 5.838531 TCAAATTTGAACTAAACCCACGT 57.161 34.783 18.45 0.00 33.55 4.49
592 623 8.630037 CCCAAAATAAGTGAAGTGAGTTTAGTT 58.370 33.333 0.00 0.00 0.00 2.24
593 624 7.996644 TCCCAAAATAAGTGAAGTGAGTTTAGT 59.003 33.333 0.00 0.00 0.00 2.24
594 625 8.290325 GTCCCAAAATAAGTGAAGTGAGTTTAG 58.710 37.037 0.00 0.00 0.00 1.85
595 626 7.041644 CGTCCCAAAATAAGTGAAGTGAGTTTA 60.042 37.037 0.00 0.00 0.00 2.01
596 627 6.238648 CGTCCCAAAATAAGTGAAGTGAGTTT 60.239 38.462 0.00 0.00 0.00 2.66
597 628 5.238650 CGTCCCAAAATAAGTGAAGTGAGTT 59.761 40.000 0.00 0.00 0.00 3.01
598 629 4.755123 CGTCCCAAAATAAGTGAAGTGAGT 59.245 41.667 0.00 0.00 0.00 3.41
599 630 4.154195 CCGTCCCAAAATAAGTGAAGTGAG 59.846 45.833 0.00 0.00 0.00 3.51
600 631 4.069304 CCGTCCCAAAATAAGTGAAGTGA 58.931 43.478 0.00 0.00 0.00 3.41
601 632 4.069304 TCCGTCCCAAAATAAGTGAAGTG 58.931 43.478 0.00 0.00 0.00 3.16
602 633 4.324267 CTCCGTCCCAAAATAAGTGAAGT 58.676 43.478 0.00 0.00 0.00 3.01
603 634 3.689649 CCTCCGTCCCAAAATAAGTGAAG 59.310 47.826 0.00 0.00 0.00 3.02
604 635 3.560453 CCCTCCGTCCCAAAATAAGTGAA 60.560 47.826 0.00 0.00 0.00 3.18
605 636 2.026636 CCCTCCGTCCCAAAATAAGTGA 60.027 50.000 0.00 0.00 0.00 3.41
606 637 2.026636 TCCCTCCGTCCCAAAATAAGTG 60.027 50.000 0.00 0.00 0.00 3.16
607 638 2.238898 CTCCCTCCGTCCCAAAATAAGT 59.761 50.000 0.00 0.00 0.00 2.24
608 639 2.238898 ACTCCCTCCGTCCCAAAATAAG 59.761 50.000 0.00 0.00 0.00 1.73
609 640 2.271777 ACTCCCTCCGTCCCAAAATAA 58.728 47.619 0.00 0.00 0.00 1.40
610 641 1.961133 ACTCCCTCCGTCCCAAAATA 58.039 50.000 0.00 0.00 0.00 1.40
611 642 1.838077 CTACTCCCTCCGTCCCAAAAT 59.162 52.381 0.00 0.00 0.00 1.82
612 643 1.272807 CTACTCCCTCCGTCCCAAAA 58.727 55.000 0.00 0.00 0.00 2.44
613 644 0.115745 ACTACTCCCTCCGTCCCAAA 59.884 55.000 0.00 0.00 0.00 3.28
614 645 1.002069 TACTACTCCCTCCGTCCCAA 58.998 55.000 0.00 0.00 0.00 4.12
615 646 1.002069 TTACTACTCCCTCCGTCCCA 58.998 55.000 0.00 0.00 0.00 4.37
616 647 2.378378 ATTACTACTCCCTCCGTCCC 57.622 55.000 0.00 0.00 0.00 4.46
617 648 4.462132 GGATAATTACTACTCCCTCCGTCC 59.538 50.000 0.00 0.00 0.00 4.79
618 649 5.323581 AGGATAATTACTACTCCCTCCGTC 58.676 45.833 0.11 0.00 0.00 4.79
619 650 5.336491 AGGATAATTACTACTCCCTCCGT 57.664 43.478 0.11 0.00 0.00 4.69
620 651 7.226325 CGTATAGGATAATTACTACTCCCTCCG 59.774 44.444 0.11 0.00 0.00 4.63
621 652 8.052141 ACGTATAGGATAATTACTACTCCCTCC 58.948 40.741 0.00 0.00 0.00 4.30
622 653 8.891720 CACGTATAGGATAATTACTACTCCCTC 58.108 40.741 0.00 0.00 0.00 4.30
623 654 7.833183 CCACGTATAGGATAATTACTACTCCCT 59.167 40.741 0.00 0.00 0.00 4.20
624 655 7.416101 GCCACGTATAGGATAATTACTACTCCC 60.416 44.444 0.00 0.00 0.00 4.30
625 656 7.121759 TGCCACGTATAGGATAATTACTACTCC 59.878 40.741 0.00 0.00 0.00 3.85
626 657 8.048534 TGCCACGTATAGGATAATTACTACTC 57.951 38.462 0.00 0.00 0.00 2.59
627 658 8.591114 ATGCCACGTATAGGATAATTACTACT 57.409 34.615 0.00 0.00 0.00 2.57
628 659 8.464404 TGATGCCACGTATAGGATAATTACTAC 58.536 37.037 0.00 0.00 0.00 2.73
676 708 4.141597 TGCACCTAAAACGGGATGATATCA 60.142 41.667 8.10 8.10 0.00 2.15
691 723 6.127423 GGAGTCTTCATTAGTAGTGCACCTAA 60.127 42.308 14.63 14.98 0.00 2.69
694 726 4.081642 TGGAGTCTTCATTAGTAGTGCACC 60.082 45.833 14.63 0.00 0.00 5.01
702 734 4.383552 GGAGCATGTGGAGTCTTCATTAGT 60.384 45.833 0.00 0.00 0.00 2.24
736 768 2.403252 AGGTAAAGGCTGAATGTCGG 57.597 50.000 0.00 0.00 0.00 4.79
739 771 6.963322 AGAGAAATAGGTAAAGGCTGAATGT 58.037 36.000 0.00 0.00 0.00 2.71
765 797 1.270550 AGCAAATGAGGCAAAGGTTCG 59.729 47.619 0.00 0.00 0.00 3.95
766 798 2.353109 GGAGCAAATGAGGCAAAGGTTC 60.353 50.000 0.00 0.00 0.00 3.62
779 811 7.103641 TCTCTTAAATAGACAACGGAGCAAAT 58.896 34.615 0.00 0.00 0.00 2.32
792 824 9.087871 CATCATCCTTCTCCTCTCTTAAATAGA 57.912 37.037 0.00 0.00 0.00 1.98
884 916 5.048643 CGATCGATACCTGGTTACTCTGATT 60.049 44.000 10.26 0.00 0.00 2.57
1036 1069 2.807107 TAGGAGCGGCGGCATTGAT 61.807 57.895 19.21 0.00 43.41 2.57
1058 1091 1.948611 GCGCCTTGTTGGTGGAGAATA 60.949 52.381 0.00 0.00 46.08 1.75
1071 1104 1.463553 AAACCAGGGAAAGCGCCTTG 61.464 55.000 2.29 0.00 34.99 3.61
1105 1138 1.180029 CTGATTTCCTGGGCAAGTGG 58.820 55.000 0.00 0.00 0.00 4.00
1171 1204 3.367703 GCTGACCCATCCTTGTTGAAATG 60.368 47.826 0.00 0.00 0.00 2.32
1268 1301 6.500041 CATCTAAAACCAAAAAGACGGAACA 58.500 36.000 0.00 0.00 0.00 3.18
1273 1306 4.865776 TGGCATCTAAAACCAAAAAGACG 58.134 39.130 0.00 0.00 0.00 4.18
1314 1347 5.411053 GCTTATTCACTCCATTCTGATAGGC 59.589 44.000 0.00 0.00 0.00 3.93
1396 1429 0.974010 TCTAGGTGGCCCGTACTTGG 60.974 60.000 0.00 0.00 35.12 3.61
1452 1485 7.160049 TGGTAAGAATAAACCGTAATGACACA 58.840 34.615 0.00 0.00 38.70 3.72
1502 1535 7.224362 CCAACAATGACAAAAGTTCATAGCAAA 59.776 33.333 0.00 0.00 32.29 3.68
1503 1536 6.700960 CCAACAATGACAAAAGTTCATAGCAA 59.299 34.615 0.00 0.00 32.29 3.91
1534 1567 1.048601 TCTTCGAGCTCAACCTGGTT 58.951 50.000 15.40 6.18 0.00 3.67
1558 1591 8.237811 ACCAATTTAGCTCCAATATTTTCGAT 57.762 30.769 0.00 0.00 0.00 3.59
1593 1626 3.425359 CCAAGTCATTTGTCTTAGCAGCG 60.425 47.826 0.00 0.00 34.87 5.18
1813 1846 3.627395 TGGCTGTTTTCTCGATACCAT 57.373 42.857 0.00 0.00 0.00 3.55
2085 2118 6.404734 CCTGAAAATGATAACAGTGGGCTAAC 60.405 42.308 0.00 0.00 0.00 2.34
2094 2127 5.188434 TGAGGCTCCTGAAAATGATAACAG 58.812 41.667 12.86 0.00 0.00 3.16
2169 2202 6.205101 TGCAACTTGGCAAATTTGAATTTT 57.795 29.167 22.31 4.74 41.65 1.82
2484 2526 5.705441 TCATGGAGATTGTGGTAACTGAAAC 59.295 40.000 0.00 0.00 37.61 2.78
2494 2536 4.036027 GCACATAACTCATGGAGATTGTGG 59.964 45.833 19.15 9.25 39.13 4.17
2532 3405 8.614469 AGAAGGAGCTGAGCAATATTATAAAC 57.386 34.615 7.39 0.00 0.00 2.01
2877 3794 3.686726 GCACTCCAAATTCGTCTCTGATT 59.313 43.478 0.00 0.00 0.00 2.57
3054 5290 8.713271 GGATATGGAAACGAAGAATATCAAGTC 58.287 37.037 0.00 0.00 33.69 3.01
3067 5303 9.797556 CGACAATTATATAGGATATGGAAACGA 57.202 33.333 0.00 0.00 0.00 3.85
3068 5304 9.797556 TCGACAATTATATAGGATATGGAAACG 57.202 33.333 0.00 0.00 0.00 3.60
3099 5343 9.472361 GCCGTGAGAAAAACTAGAACATATATA 57.528 33.333 0.00 0.00 0.00 0.86
3100 5344 8.204836 AGCCGTGAGAAAAACTAGAACATATAT 58.795 33.333 0.00 0.00 0.00 0.86
3101 5345 7.553334 AGCCGTGAGAAAAACTAGAACATATA 58.447 34.615 0.00 0.00 0.00 0.86
3102 5346 6.407202 AGCCGTGAGAAAAACTAGAACATAT 58.593 36.000 0.00 0.00 0.00 1.78
3104 5348 4.642429 AGCCGTGAGAAAAACTAGAACAT 58.358 39.130 0.00 0.00 0.00 2.71
3105 5349 4.056050 GAGCCGTGAGAAAAACTAGAACA 58.944 43.478 0.00 0.00 0.00 3.18
3106 5350 4.308265 AGAGCCGTGAGAAAAACTAGAAC 58.692 43.478 0.00 0.00 0.00 3.01
3111 5583 3.070302 AGAGAAGAGCCGTGAGAAAAACT 59.930 43.478 0.00 0.00 0.00 2.66
3112 5584 3.185391 CAGAGAAGAGCCGTGAGAAAAAC 59.815 47.826 0.00 0.00 0.00 2.43
3122 5594 3.181495 ACTCGATAAACAGAGAAGAGCCG 60.181 47.826 0.00 0.00 37.87 5.52
3128 5600 6.868864 CCAAAAGAGACTCGATAAACAGAGAA 59.131 38.462 0.00 0.00 37.87 2.87
3129 5601 6.208797 TCCAAAAGAGACTCGATAAACAGAGA 59.791 38.462 0.00 0.00 37.87 3.10
3138 5610 3.791245 GAGCATCCAAAAGAGACTCGAT 58.209 45.455 0.00 0.00 0.00 3.59
3174 5646 5.041940 CGGGACAAGCTAAGTGAACTATAC 58.958 45.833 0.00 0.00 0.00 1.47
3184 5656 1.970917 CTTGCGCGGGACAAGCTAAG 61.971 60.000 18.31 0.00 38.23 2.18
3513 5994 4.887655 TCAACCCTCAGTTTCTTTTCCTTC 59.112 41.667 0.00 0.00 36.18 3.46
3614 6475 2.695666 TCTAGAAGGCCCTCTGAATTCG 59.304 50.000 14.54 0.00 0.00 3.34
3646 6512 4.768448 GGGTAATCCTCCTTTTCGGAAAAA 59.232 41.667 15.99 2.61 42.53 1.94
3647 6513 4.202588 TGGGTAATCCTCCTTTTCGGAAAA 60.203 41.667 14.64 14.64 42.53 2.29
3648 6514 3.331294 TGGGTAATCCTCCTTTTCGGAAA 59.669 43.478 0.00 0.00 42.53 3.13
3649 6515 2.914278 TGGGTAATCCTCCTTTTCGGAA 59.086 45.455 0.00 0.00 42.53 4.30
3650 6516 2.553464 TGGGTAATCCTCCTTTTCGGA 58.447 47.619 0.00 0.00 40.30 4.55
3651 6517 3.214328 CATGGGTAATCCTCCTTTTCGG 58.786 50.000 0.00 0.00 36.20 4.30
3652 6518 3.214328 CCATGGGTAATCCTCCTTTTCG 58.786 50.000 2.85 0.00 36.20 3.46
3653 6519 2.959030 GCCATGGGTAATCCTCCTTTTC 59.041 50.000 15.13 0.00 36.20 2.29
3654 6520 2.359249 GGCCATGGGTAATCCTCCTTTT 60.359 50.000 15.13 0.00 36.20 2.27
3655 6521 1.217942 GGCCATGGGTAATCCTCCTTT 59.782 52.381 15.13 0.00 36.20 3.11
3656 6522 0.853530 GGCCATGGGTAATCCTCCTT 59.146 55.000 15.13 0.00 36.20 3.36
3657 6523 0.028642 AGGCCATGGGTAATCCTCCT 60.029 55.000 15.13 5.62 36.20 3.69
3658 6524 0.402121 GAGGCCATGGGTAATCCTCC 59.598 60.000 19.57 8.11 37.85 4.30
3659 6525 1.072965 CAGAGGCCATGGGTAATCCTC 59.927 57.143 21.66 21.66 42.68 3.71
3660 6526 1.143813 CAGAGGCCATGGGTAATCCT 58.856 55.000 15.13 10.94 36.20 3.24
3661 6527 1.140312 TCAGAGGCCATGGGTAATCC 58.860 55.000 15.13 5.47 0.00 3.01
3662 6528 1.771255 AGTCAGAGGCCATGGGTAATC 59.229 52.381 15.13 0.00 0.00 1.75
3663 6529 1.492176 CAGTCAGAGGCCATGGGTAAT 59.508 52.381 15.13 0.00 0.00 1.89
3664 6530 0.911769 CAGTCAGAGGCCATGGGTAA 59.088 55.000 15.13 0.00 0.00 2.85
3665 6531 0.252696 ACAGTCAGAGGCCATGGGTA 60.253 55.000 15.13 0.00 0.00 3.69
3666 6532 0.252696 TACAGTCAGAGGCCATGGGT 60.253 55.000 15.13 1.59 0.00 4.51
3667 6533 0.467384 CTACAGTCAGAGGCCATGGG 59.533 60.000 15.13 0.00 0.00 4.00
3668 6534 1.489481 TCTACAGTCAGAGGCCATGG 58.511 55.000 7.63 7.63 0.00 3.66
3669 6535 2.499289 AGTTCTACAGTCAGAGGCCATG 59.501 50.000 5.01 2.98 0.00 3.66
3670 6536 2.499289 CAGTTCTACAGTCAGAGGCCAT 59.501 50.000 5.01 0.00 0.00 4.40
3671 6537 1.895798 CAGTTCTACAGTCAGAGGCCA 59.104 52.381 5.01 0.00 0.00 5.36
3672 6538 1.896465 ACAGTTCTACAGTCAGAGGCC 59.104 52.381 0.00 0.00 0.00 5.19
3673 6539 2.928731 GCACAGTTCTACAGTCAGAGGC 60.929 54.545 0.00 0.00 0.00 4.70
3674 6540 2.560542 AGCACAGTTCTACAGTCAGAGG 59.439 50.000 0.00 0.00 0.00 3.69
3675 6541 3.254411 TCAGCACAGTTCTACAGTCAGAG 59.746 47.826 0.00 0.00 0.00 3.35
3676 6542 3.222603 TCAGCACAGTTCTACAGTCAGA 58.777 45.455 0.00 0.00 0.00 3.27
3677 6543 3.650070 TCAGCACAGTTCTACAGTCAG 57.350 47.619 0.00 0.00 0.00 3.51
3678 6544 4.607293 AATCAGCACAGTTCTACAGTCA 57.393 40.909 0.00 0.00 0.00 3.41
3679 6545 5.931441 AAAATCAGCACAGTTCTACAGTC 57.069 39.130 0.00 0.00 0.00 3.51
3740 6770 6.106673 CACAAGGGAAGTAGTCAATTATCGT 58.893 40.000 0.00 0.00 0.00 3.73
3741 6771 5.523916 CCACAAGGGAAGTAGTCAATTATCG 59.476 44.000 0.00 0.00 40.01 2.92
3743 6773 6.636454 TCCACAAGGGAAGTAGTCAATTAT 57.364 37.500 0.00 0.00 44.80 1.28
3759 6790 3.052082 CAGCCGCCTGTCCACAAG 61.052 66.667 0.00 0.00 34.31 3.16
3841 6872 8.869109 TCATCATTCTCAAGGGTTTGTTTAATT 58.131 29.630 0.00 0.00 35.73 1.40
3902 6934 4.065088 TCTAACAGTGAAGCTTTGCGAAT 58.935 39.130 0.00 0.00 0.00 3.34
3912 6944 5.461032 AAGACAGGACTCTAACAGTGAAG 57.539 43.478 0.00 0.00 34.41 3.02
3917 6949 6.982852 TGAACTAAAGACAGGACTCTAACAG 58.017 40.000 0.00 0.00 0.00 3.16
3919 6951 6.869388 CCTTGAACTAAAGACAGGACTCTAAC 59.131 42.308 0.00 0.00 0.00 2.34
3925 6957 4.704965 ACACCTTGAACTAAAGACAGGAC 58.295 43.478 0.00 0.00 0.00 3.85
3927 6959 4.881850 ACAACACCTTGAACTAAAGACAGG 59.118 41.667 0.00 0.00 0.00 4.00
3962 6996 1.123928 AGAGGGGATTAGCTCGTTGG 58.876 55.000 0.00 0.00 0.00 3.77
3966 7000 1.033574 ACGAAGAGGGGATTAGCTCG 58.966 55.000 0.00 0.00 0.00 5.03
3969 7003 5.365619 TGAAAATACGAAGAGGGGATTAGC 58.634 41.667 0.00 0.00 0.00 3.09
3976 7010 4.156008 CCAACCTTGAAAATACGAAGAGGG 59.844 45.833 0.00 0.00 0.00 4.30
4091 7125 5.821204 ACTTGAGAACAAATTTGAGTTCCG 58.179 37.500 24.64 12.67 43.89 4.30
4113 7147 9.173939 GTAAGTTGCTGAATATCAAATGCATAC 57.826 33.333 0.00 0.00 27.64 2.39
4138 7172 7.916914 AGGCAAGTTCAAATTAGTTATACGT 57.083 32.000 0.00 0.00 0.00 3.57
4139 7173 8.447833 TGAAGGCAAGTTCAAATTAGTTATACG 58.552 33.333 0.00 0.00 33.41 3.06
4203 7239 0.037590 ACTTTCCAGTGGCGGCATTA 59.962 50.000 17.19 0.00 0.00 1.90
4212 7248 6.039047 CCATCAAATCCTCATACTTTCCAGTG 59.961 42.308 0.00 0.00 34.06 3.66
4215 7251 4.889409 GCCATCAAATCCTCATACTTTCCA 59.111 41.667 0.00 0.00 0.00 3.53
4248 7284 4.440525 GCACATACCTTGGTTGGATCAATG 60.441 45.833 0.00 0.00 0.00 2.82
4301 7337 8.572185 CCTCATATGAGAGTATCGGTTATATGG 58.428 40.741 30.40 7.66 44.74 2.74
4350 7386 5.417580 GGATTTTCAGGTACATTGGCTTACA 59.582 40.000 0.00 0.00 0.00 2.41
4352 7388 5.826643 AGGATTTTCAGGTACATTGGCTTA 58.173 37.500 0.00 0.00 0.00 3.09
4353 7389 4.677182 AGGATTTTCAGGTACATTGGCTT 58.323 39.130 0.00 0.00 0.00 4.35
4354 7390 4.322057 AGGATTTTCAGGTACATTGGCT 57.678 40.909 0.00 0.00 0.00 4.75
4355 7391 5.437060 TCTAGGATTTTCAGGTACATTGGC 58.563 41.667 0.00 0.00 0.00 4.52
4356 7392 6.653989 ACTCTAGGATTTTCAGGTACATTGG 58.346 40.000 0.00 0.00 0.00 3.16
4357 7393 6.763610 GGACTCTAGGATTTTCAGGTACATTG 59.236 42.308 0.00 0.00 0.00 2.82
4446 7494 6.463995 TTTATGGGTTCCATGCTTAATGTC 57.536 37.500 9.50 0.00 44.84 3.06
4450 7498 7.108847 CCAAAATTTATGGGTTCCATGCTTAA 58.891 34.615 9.50 0.42 44.84 1.85
4470 7518 2.534042 TCAAACTGGTCACCCCAAAA 57.466 45.000 0.00 0.00 44.65 2.44
4491 7542 5.993748 AGAATCTCTCTTCGAAAGGTCTT 57.006 39.130 0.00 0.00 0.00 3.01
4501 7552 5.393866 AGGAGGGACATAGAATCTCTCTTC 58.606 45.833 2.12 0.00 42.48 2.87
4505 7556 7.234577 GTGAATAAGGAGGGACATAGAATCTCT 59.765 40.741 0.00 0.00 0.00 3.10
4507 7558 6.846505 TGTGAATAAGGAGGGACATAGAATCT 59.153 38.462 0.00 0.00 0.00 2.40
4518 7569 6.653989 ACTAGTTGATTGTGAATAAGGAGGG 58.346 40.000 0.00 0.00 0.00 4.30
4529 7580 7.094762 GGAGGGTAAAGAAACTAGTTGATTGTG 60.095 40.741 9.34 0.00 0.00 3.33
4530 7581 6.940867 GGAGGGTAAAGAAACTAGTTGATTGT 59.059 38.462 9.34 0.00 0.00 2.71
4533 7584 6.954352 AGGAGGGTAAAGAAACTAGTTGAT 57.046 37.500 9.34 0.00 0.00 2.57
4534 7585 6.758806 AAGGAGGGTAAAGAAACTAGTTGA 57.241 37.500 9.34 0.00 0.00 3.18
4541 7592 4.023107 GCACAGAAAGGAGGGTAAAGAAAC 60.023 45.833 0.00 0.00 0.00 2.78
4587 7638 4.447054 TGTTTGCGCAAAATCCAGTTAATG 59.553 37.500 35.09 0.00 31.33 1.90
4664 7715 2.030551 ACGACAACAGCGTCAGAGA 58.969 52.632 0.00 0.00 37.42 3.10
4722 7773 3.196901 TCTGTATACCTGAACCGCACATT 59.803 43.478 0.00 0.00 0.00 2.71
4891 7945 7.724305 TCTCAAAACATAACACAGTAGTTCC 57.276 36.000 0.00 0.00 33.07 3.62
4925 7979 0.941542 TCGCCACAACAGCAAGTAAC 59.058 50.000 0.00 0.00 0.00 2.50
4932 7986 0.040958 CTTTGACTCGCCACAACAGC 60.041 55.000 0.00 0.00 0.00 4.40
4933 7987 0.040958 GCTTTGACTCGCCACAACAG 60.041 55.000 0.00 0.00 0.00 3.16
4934 7988 1.444119 GGCTTTGACTCGCCACAACA 61.444 55.000 0.00 0.00 45.59 3.33
4974 8031 7.678947 ACTTCATCATTCACTTTTAGGACTG 57.321 36.000 0.00 0.00 0.00 3.51
5102 8161 6.805271 CCTTTCATGCAAAGAGTGTATCAAAG 59.195 38.462 15.13 3.93 44.02 2.77
5105 8164 5.316167 ACCTTTCATGCAAAGAGTGTATCA 58.684 37.500 15.13 0.00 44.02 2.15
5117 8180 7.094592 TGTGAATATTACGAAACCTTTCATGCA 60.095 33.333 0.00 0.00 37.01 3.96
5138 8201 7.064016 GCACAAAATTAAAGGAACAACTGTGAA 59.936 33.333 0.00 0.00 33.89 3.18
5153 8216 9.606631 AGTTAAGGAACAAATGCACAAAATTAA 57.393 25.926 0.00 0.00 38.10 1.40
5154 8217 9.039870 CAGTTAAGGAACAAATGCACAAAATTA 57.960 29.630 0.00 0.00 38.10 1.40
5155 8218 7.768120 TCAGTTAAGGAACAAATGCACAAAATT 59.232 29.630 0.00 0.00 38.10 1.82
5156 8219 7.271511 TCAGTTAAGGAACAAATGCACAAAAT 58.728 30.769 0.00 0.00 38.10 1.82
5224 8287 4.640771 ACCTTCCATGCAAAGAGTCTAA 57.359 40.909 0.00 0.00 0.00 2.10
5359 8423 1.012086 CATTGGATCACACTGCCTCG 58.988 55.000 0.00 0.00 0.00 4.63
5369 8433 4.801521 AATGATGGGAGACATTGGATCA 57.198 40.909 0.00 0.00 40.72 2.92
5396 8460 6.755141 GGATAGTTAACATGTTAGCGACAAGA 59.245 38.462 21.97 8.13 42.62 3.02
5415 8479 2.750807 GCCCATGTGCAATGAGGATAGT 60.751 50.000 9.56 0.00 0.00 2.12
5432 8496 0.913934 TGCCCATCTCTGTTAGCCCA 60.914 55.000 0.00 0.00 0.00 5.36
5433 8497 0.255890 TTGCCCATCTCTGTTAGCCC 59.744 55.000 0.00 0.00 0.00 5.19
5440 8504 4.404073 AGTCTACTAAGTTGCCCATCTCTG 59.596 45.833 0.00 0.00 0.00 3.35
5531 8595 1.372582 GCTGCTTTCATCATGTCGGA 58.627 50.000 0.00 0.00 0.00 4.55
5541 8605 2.618241 AGTTTCACATTCGCTGCTTTCA 59.382 40.909 0.00 0.00 0.00 2.69
5650 8714 7.557719 CCCAACTAAGTCATATTTGTCCTCAAT 59.442 37.037 0.00 0.00 33.32 2.57
5667 8734 3.411446 TCATGACTTGCACCCAACTAAG 58.589 45.455 0.00 0.00 0.00 2.18
5671 8738 3.665745 AAATCATGACTTGCACCCAAC 57.334 42.857 0.00 0.00 0.00 3.77
5734 8801 6.398918 TCCTTTTCCATTTCTTACTCGAGAG 58.601 40.000 21.68 7.17 0.00 3.20
5741 8815 8.894731 GGTCTTCTATCCTTTTCCATTTCTTAC 58.105 37.037 0.00 0.00 0.00 2.34
5785 8860 2.271800 CAACTCACCGTTCCAGCTATC 58.728 52.381 0.00 0.00 32.27 2.08
5787 8862 1.000506 GACAACTCACCGTTCCAGCTA 59.999 52.381 0.00 0.00 32.27 3.32
5788 8863 0.249911 GACAACTCACCGTTCCAGCT 60.250 55.000 0.00 0.00 32.27 4.24
5789 8864 0.531974 TGACAACTCACCGTTCCAGC 60.532 55.000 0.00 0.00 32.27 4.85
5790 8865 2.169832 ATGACAACTCACCGTTCCAG 57.830 50.000 0.00 0.00 32.27 3.86
5791 8866 3.595173 CATATGACAACTCACCGTTCCA 58.405 45.455 0.00 0.00 32.27 3.53
5792 8867 2.936498 CCATATGACAACTCACCGTTCC 59.064 50.000 3.65 0.00 32.27 3.62
5794 8869 3.369471 CCTCCATATGACAACTCACCGTT 60.369 47.826 3.65 0.00 35.88 4.44
5796 8871 2.430694 TCCTCCATATGACAACTCACCG 59.569 50.000 3.65 0.00 0.00 4.94
5806 8882 4.023980 AGAACAAGTCGTCCTCCATATGA 58.976 43.478 3.65 0.00 0.00 2.15


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.