Multiple sequence alignment - TraesCS6B01G039200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G039200 chr6B 100.000 3041 0 0 1 3041 23607019 23603979 0.000000e+00 5616.0
1 TraesCS6B01G039200 chr6B 92.450 649 46 3 96 742 21063405 21064052 0.000000e+00 924.0
2 TraesCS6B01G039200 chr6B 85.116 692 88 10 85 763 194422903 194423592 0.000000e+00 693.0
3 TraesCS6B01G039200 chr6B 92.216 167 13 0 1588 1754 690750960 690750794 1.410000e-58 237.0
4 TraesCS6B01G039200 chr6D 90.681 955 78 9 2093 3041 13155248 13156197 0.000000e+00 1260.0
5 TraesCS6B01G039200 chr6D 85.314 892 50 24 737 1586 13154038 13154890 0.000000e+00 846.0
6 TraesCS6B01G039200 chr6D 86.982 338 14 11 1756 2090 13154897 13155207 1.340000e-93 353.0
7 TraesCS6B01G039200 chr6D 78.641 515 56 29 779 1285 13110549 13111017 2.970000e-75 292.0
8 TraesCS6B01G039200 chr6D 91.257 183 11 3 1409 1588 13111151 13111331 8.420000e-61 244.0
9 TraesCS6B01G039200 chr6D 94.340 159 9 0 1598 1756 81746924 81746766 8.420000e-61 244.0
10 TraesCS6B01G039200 chr1B 92.593 648 45 3 96 740 269218903 269218256 0.000000e+00 928.0
11 TraesCS6B01G039200 chr1B 92.190 653 48 3 96 746 25227752 25227101 0.000000e+00 920.0
12 TraesCS6B01G039200 chr1B 92.025 652 49 3 96 745 644278200 644278850 0.000000e+00 913.0
13 TraesCS6B01G039200 chr1B 89.503 181 16 2 1592 1770 259515324 259515145 3.050000e-55 226.0
14 TraesCS6B01G039200 chr1B 88.000 50 6 0 2510 2559 37612591 37612542 3.270000e-05 60.2
15 TraesCS6B01G039200 chr2D 92.581 647 44 4 99 743 617082203 617082847 0.000000e+00 926.0
16 TraesCS6B01G039200 chr2D 89.300 243 23 2 2168 2409 78385629 78385389 4.930000e-78 302.0
17 TraesCS6B01G039200 chr2D 90.086 232 20 2 2168 2398 378729405 378729176 6.370000e-77 298.0
18 TraesCS6B01G039200 chr2D 88.571 245 25 2 2168 2409 284551507 284551263 8.250000e-76 294.0
19 TraesCS6B01G039200 chr2D 90.751 173 13 2 1598 1767 391812502 391812330 8.480000e-56 228.0
20 TraesCS6B01G039200 chr3D 92.679 642 44 3 96 734 559108841 559109482 0.000000e+00 922.0
21 TraesCS6B01G039200 chr3D 81.333 225 29 9 1768 1982 291975807 291975586 1.450000e-38 171.0
22 TraesCS6B01G039200 chr3D 86.207 145 18 1 1437 1579 291975966 291975822 4.060000e-34 156.0
23 TraesCS6B01G039200 chr4B 92.438 648 44 5 96 740 174042074 174041429 0.000000e+00 920.0
24 TraesCS6B01G039200 chr4B 89.583 240 21 3 2179 2415 565833265 565833503 4.930000e-78 302.0
25 TraesCS6B01G039200 chr4B 93.125 160 11 0 1598 1757 448896207 448896048 5.070000e-58 235.0
26 TraesCS6B01G039200 chr4A 91.921 656 49 4 96 747 702119035 702119690 0.000000e+00 915.0
27 TraesCS6B01G039200 chr1A 92.154 650 48 3 98 745 40891729 40891081 0.000000e+00 915.0
28 TraesCS6B01G039200 chr1A 88.000 50 6 0 2510 2559 23229670 23229621 3.270000e-05 60.2
29 TraesCS6B01G039200 chrUn 90.801 674 53 8 96 764 264393679 264394348 0.000000e+00 893.0
30 TraesCS6B01G039200 chrUn 95.181 83 4 0 840 922 71424351 71424433 6.840000e-27 132.0
31 TraesCS6B01G039200 chrUn 95.181 83 4 0 840 922 71482075 71482157 6.840000e-27 132.0
32 TraesCS6B01G039200 chrUn 94.186 86 5 0 840 925 358779698 358779613 6.840000e-27 132.0
33 TraesCS6B01G039200 chr5A 81.887 657 103 12 119 766 492629125 492629774 9.590000e-150 540.0
34 TraesCS6B01G039200 chr5A 90.043 231 21 1 2168 2398 427201058 427200830 6.370000e-77 298.0
35 TraesCS6B01G039200 chr3B 86.334 461 55 6 314 766 821340468 821340008 2.110000e-136 496.0
36 TraesCS6B01G039200 chr3B 91.716 169 13 1 1598 1766 615136370 615136203 1.820000e-57 233.0
37 TraesCS6B01G039200 chr3B 85.065 154 15 4 1103 1255 385189822 385189676 1.890000e-32 150.0
38 TraesCS6B01G039200 chr3B 85.517 145 15 2 1437 1579 385189653 385189513 2.440000e-31 147.0
39 TraesCS6B01G039200 chr3B 80.402 199 22 10 1803 1985 385189463 385189266 5.290000e-28 135.0
40 TraesCS6B01G039200 chr7B 79.800 599 98 15 172 762 664828693 664828110 6.070000e-112 414.0
41 TraesCS6B01G039200 chr6A 90.596 319 20 3 1286 1597 14385835 14386150 6.070000e-112 414.0
42 TraesCS6B01G039200 chr6A 92.825 223 9 5 759 974 14385011 14385233 1.760000e-82 316.0
43 TraesCS6B01G039200 chr6A 84.726 347 15 10 966 1285 14385436 14385771 2.280000e-81 313.0
44 TraesCS6B01G039200 chr6A 88.172 93 9 1 2636 2728 14386530 14386620 3.210000e-20 110.0
45 TraesCS6B01G039200 chr7D 88.980 245 25 2 2163 2407 134432771 134432529 4.930000e-78 302.0
46 TraesCS6B01G039200 chr7D 88.618 246 20 7 2168 2409 54151118 54150877 2.970000e-75 292.0
47 TraesCS6B01G039200 chr1D 88.525 244 22 4 2168 2409 93134093 93133854 1.070000e-74 291.0
48 TraesCS6B01G039200 chr1D 92.727 165 12 0 1592 1756 311986612 311986776 3.920000e-59 239.0
49 TraesCS6B01G039200 chr3A 92.683 164 12 0 1591 1754 648037007 648037170 1.410000e-58 237.0
50 TraesCS6B01G039200 chr3A 81.538 260 36 10 512 764 659972564 659972818 1.430000e-48 204.0
51 TraesCS6B01G039200 chr3A 85.621 153 16 3 1103 1255 384732257 384732111 4.060000e-34 156.0
52 TraesCS6B01G039200 chr3A 89.091 110 12 0 1437 1546 384732088 384731979 1.470000e-28 137.0
53 TraesCS6B01G039200 chr5D 91.176 170 13 2 1598 1766 220710665 220710497 2.360000e-56 230.0
54 TraesCS6B01G039200 chr2B 76.645 304 59 10 441 737 709791809 709792107 1.130000e-34 158.0
55 TraesCS6B01G039200 chr2A 85.217 115 15 2 1438 1551 197248672 197248785 1.920000e-22 117.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G039200 chr6B 23603979 23607019 3040 True 5616.000000 5616 100.00000 1 3041 1 chr6B.!!$R1 3040
1 TraesCS6B01G039200 chr6B 21063405 21064052 647 False 924.000000 924 92.45000 96 742 1 chr6B.!!$F1 646
2 TraesCS6B01G039200 chr6B 194422903 194423592 689 False 693.000000 693 85.11600 85 763 1 chr6B.!!$F2 678
3 TraesCS6B01G039200 chr6D 13154038 13156197 2159 False 819.666667 1260 87.65900 737 3041 3 chr6D.!!$F2 2304
4 TraesCS6B01G039200 chr6D 13110549 13111331 782 False 268.000000 292 84.94900 779 1588 2 chr6D.!!$F1 809
5 TraesCS6B01G039200 chr1B 269218256 269218903 647 True 928.000000 928 92.59300 96 740 1 chr1B.!!$R4 644
6 TraesCS6B01G039200 chr1B 25227101 25227752 651 True 920.000000 920 92.19000 96 746 1 chr1B.!!$R1 650
7 TraesCS6B01G039200 chr1B 644278200 644278850 650 False 913.000000 913 92.02500 96 745 1 chr1B.!!$F1 649
8 TraesCS6B01G039200 chr2D 617082203 617082847 644 False 926.000000 926 92.58100 99 743 1 chr2D.!!$F1 644
9 TraesCS6B01G039200 chr3D 559108841 559109482 641 False 922.000000 922 92.67900 96 734 1 chr3D.!!$F1 638
10 TraesCS6B01G039200 chr4B 174041429 174042074 645 True 920.000000 920 92.43800 96 740 1 chr4B.!!$R1 644
11 TraesCS6B01G039200 chr4A 702119035 702119690 655 False 915.000000 915 91.92100 96 747 1 chr4A.!!$F1 651
12 TraesCS6B01G039200 chr1A 40891081 40891729 648 True 915.000000 915 92.15400 98 745 1 chr1A.!!$R2 647
13 TraesCS6B01G039200 chrUn 264393679 264394348 669 False 893.000000 893 90.80100 96 764 1 chrUn.!!$F3 668
14 TraesCS6B01G039200 chr5A 492629125 492629774 649 False 540.000000 540 81.88700 119 766 1 chr5A.!!$F1 647
15 TraesCS6B01G039200 chr7B 664828110 664828693 583 True 414.000000 414 79.80000 172 762 1 chr7B.!!$R1 590
16 TraesCS6B01G039200 chr6A 14385011 14386620 1609 False 288.250000 414 89.07975 759 2728 4 chr6A.!!$F1 1969

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
181 184 0.099082 CTCGTCTTCGGTGGCTCTAC 59.901 60.0 0.0 0.0 37.69 2.59 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2055 2460 0.028505 GCATAGACCTTCGTCGCGTA 59.971 55.0 5.77 0.0 44.28 4.42 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.827586 TTCTACAGAGAGAGAAAAGGAGAC 57.172 41.667 0.00 0.00 31.77 3.36
24 25 5.882040 TCTACAGAGAGAGAAAAGGAGACA 58.118 41.667 0.00 0.00 0.00 3.41
25 26 6.489603 TCTACAGAGAGAGAAAAGGAGACAT 58.510 40.000 0.00 0.00 0.00 3.06
26 27 5.404466 ACAGAGAGAGAAAAGGAGACATG 57.596 43.478 0.00 0.00 0.00 3.21
27 28 4.837860 ACAGAGAGAGAAAAGGAGACATGT 59.162 41.667 0.00 0.00 0.00 3.21
28 29 6.013379 ACAGAGAGAGAAAAGGAGACATGTA 58.987 40.000 0.00 0.00 0.00 2.29
29 30 6.071616 ACAGAGAGAGAAAAGGAGACATGTAC 60.072 42.308 0.00 0.00 0.00 2.90
30 31 6.013379 AGAGAGAGAAAAGGAGACATGTACA 58.987 40.000 0.00 0.00 0.00 2.90
31 32 6.495181 AGAGAGAGAAAAGGAGACATGTACAA 59.505 38.462 0.00 0.00 0.00 2.41
32 33 7.015682 AGAGAGAGAAAAGGAGACATGTACAAA 59.984 37.037 0.00 0.00 0.00 2.83
33 34 7.158021 AGAGAGAAAAGGAGACATGTACAAAG 58.842 38.462 0.00 0.00 0.00 2.77
34 35 6.234177 AGAGAAAAGGAGACATGTACAAAGG 58.766 40.000 0.00 0.00 0.00 3.11
35 36 5.316987 AGAAAAGGAGACATGTACAAAGGG 58.683 41.667 0.00 0.00 0.00 3.95
36 37 3.721087 AAGGAGACATGTACAAAGGGG 57.279 47.619 0.00 0.00 0.00 4.79
37 38 1.282157 AGGAGACATGTACAAAGGGGC 59.718 52.381 0.00 0.00 0.00 5.80
38 39 1.369625 GAGACATGTACAAAGGGGCG 58.630 55.000 0.00 0.00 0.00 6.13
39 40 0.676782 AGACATGTACAAAGGGGCGC 60.677 55.000 0.00 0.00 0.00 6.53
40 41 0.958382 GACATGTACAAAGGGGCGCA 60.958 55.000 10.83 0.00 0.00 6.09
41 42 1.241315 ACATGTACAAAGGGGCGCAC 61.241 55.000 10.83 4.83 0.00 5.34
42 43 0.960364 CATGTACAAAGGGGCGCACT 60.960 55.000 10.74 3.20 0.00 4.40
43 44 0.251165 ATGTACAAAGGGGCGCACTT 60.251 50.000 10.74 10.52 0.00 3.16
44 45 0.466555 TGTACAAAGGGGCGCACTTT 60.467 50.000 19.61 19.61 38.62 2.66
45 46 0.240145 GTACAAAGGGGCGCACTTTC 59.760 55.000 21.67 10.82 36.09 2.62
46 47 0.109723 TACAAAGGGGCGCACTTTCT 59.890 50.000 21.67 15.16 36.09 2.52
47 48 0.755327 ACAAAGGGGCGCACTTTCTT 60.755 50.000 21.67 9.73 36.09 2.52
48 49 0.389025 CAAAGGGGCGCACTTTCTTT 59.611 50.000 21.67 14.75 36.09 2.52
49 50 1.119684 AAAGGGGCGCACTTTCTTTT 58.880 45.000 19.61 7.04 33.07 2.27
50 51 1.119684 AAGGGGCGCACTTTCTTTTT 58.880 45.000 10.74 0.00 0.00 1.94
51 52 1.989706 AGGGGCGCACTTTCTTTTTA 58.010 45.000 10.74 0.00 0.00 1.52
52 53 1.886542 AGGGGCGCACTTTCTTTTTAG 59.113 47.619 10.74 0.00 0.00 1.85
53 54 1.067846 GGGGCGCACTTTCTTTTTAGG 60.068 52.381 10.74 0.00 0.00 2.69
54 55 1.883926 GGGCGCACTTTCTTTTTAGGA 59.116 47.619 10.83 0.00 0.00 2.94
55 56 2.095212 GGGCGCACTTTCTTTTTAGGAG 60.095 50.000 10.83 0.00 0.00 3.69
56 57 2.812011 GGCGCACTTTCTTTTTAGGAGA 59.188 45.455 10.83 0.00 0.00 3.71
57 58 3.365064 GGCGCACTTTCTTTTTAGGAGAC 60.365 47.826 10.83 0.00 0.00 3.36
58 59 3.664537 GCGCACTTTCTTTTTAGGAGACG 60.665 47.826 0.30 0.00 0.00 4.18
59 60 3.739300 CGCACTTTCTTTTTAGGAGACGA 59.261 43.478 0.00 0.00 0.00 4.20
60 61 4.143305 CGCACTTTCTTTTTAGGAGACGAG 60.143 45.833 0.00 0.00 0.00 4.18
61 62 4.377533 GCACTTTCTTTTTAGGAGACGAGC 60.378 45.833 0.00 0.00 0.00 5.03
62 63 4.750098 CACTTTCTTTTTAGGAGACGAGCA 59.250 41.667 0.00 0.00 0.00 4.26
63 64 5.409826 CACTTTCTTTTTAGGAGACGAGCAT 59.590 40.000 0.00 0.00 0.00 3.79
64 65 6.590292 CACTTTCTTTTTAGGAGACGAGCATA 59.410 38.462 0.00 0.00 0.00 3.14
65 66 7.117812 CACTTTCTTTTTAGGAGACGAGCATAA 59.882 37.037 0.00 0.00 0.00 1.90
66 67 7.824779 ACTTTCTTTTTAGGAGACGAGCATAAT 59.175 33.333 0.00 0.00 0.00 1.28
67 68 8.561738 TTTCTTTTTAGGAGACGAGCATAATT 57.438 30.769 0.00 0.00 0.00 1.40
68 69 9.661563 TTTCTTTTTAGGAGACGAGCATAATTA 57.338 29.630 0.00 0.00 0.00 1.40
69 70 8.644318 TCTTTTTAGGAGACGAGCATAATTAC 57.356 34.615 0.00 0.00 0.00 1.89
70 71 8.255206 TCTTTTTAGGAGACGAGCATAATTACA 58.745 33.333 0.00 0.00 0.00 2.41
71 72 8.958119 TTTTTAGGAGACGAGCATAATTACAT 57.042 30.769 0.00 0.00 0.00 2.29
72 73 8.589335 TTTTAGGAGACGAGCATAATTACATC 57.411 34.615 0.00 0.00 0.00 3.06
73 74 5.140747 AGGAGACGAGCATAATTACATCC 57.859 43.478 0.00 0.00 0.00 3.51
74 75 3.921021 GGAGACGAGCATAATTACATCCG 59.079 47.826 0.00 0.00 0.00 4.18
75 76 4.321008 GGAGACGAGCATAATTACATCCGA 60.321 45.833 0.00 0.00 0.00 4.55
76 77 5.196341 AGACGAGCATAATTACATCCGAA 57.804 39.130 0.00 0.00 0.00 4.30
77 78 5.784177 AGACGAGCATAATTACATCCGAAT 58.216 37.500 0.00 0.00 0.00 3.34
78 79 5.864474 AGACGAGCATAATTACATCCGAATC 59.136 40.000 0.00 0.00 0.00 2.52
79 80 5.784177 ACGAGCATAATTACATCCGAATCT 58.216 37.500 0.00 0.00 0.00 2.40
80 81 5.864474 ACGAGCATAATTACATCCGAATCTC 59.136 40.000 0.00 0.00 0.00 2.75
81 82 5.289675 CGAGCATAATTACATCCGAATCTCC 59.710 44.000 0.00 0.00 0.00 3.71
82 83 6.114187 AGCATAATTACATCCGAATCTCCA 57.886 37.500 0.00 0.00 0.00 3.86
83 84 6.715280 AGCATAATTACATCCGAATCTCCAT 58.285 36.000 0.00 0.00 0.00 3.41
88 89 7.736447 AATTACATCCGAATCTCCATCTTTC 57.264 36.000 0.00 0.00 0.00 2.62
89 90 4.760530 ACATCCGAATCTCCATCTTTCA 57.239 40.909 0.00 0.00 0.00 2.69
93 94 3.055167 TCCGAATCTCCATCTTTCAAGCA 60.055 43.478 0.00 0.00 0.00 3.91
131 133 6.008696 TCCAAGAAAGAAAGTTAGGGTTCA 57.991 37.500 0.00 0.00 0.00 3.18
137 140 4.388577 AGAAAGTTAGGGTTCATGCCTT 57.611 40.909 0.00 0.00 0.00 4.35
181 184 0.099082 CTCGTCTTCGGTGGCTCTAC 59.901 60.000 0.00 0.00 37.69 2.59
317 325 4.159506 CGGCTCCCTGAAAATGGAATAAAA 59.840 41.667 0.00 0.00 0.00 1.52
325 333 7.029563 CCTGAAAATGGAATAAAAGTCTTCCG 58.970 38.462 0.00 0.00 43.22 4.30
349 357 3.953775 CCCCCGTTCCAGCAGTGT 61.954 66.667 0.00 0.00 0.00 3.55
350 358 2.589157 CCCCCGTTCCAGCAGTGTA 61.589 63.158 0.00 0.00 0.00 2.90
361 369 2.057316 CAGCAGTGTATCTAGCATCGC 58.943 52.381 0.00 0.00 0.00 4.58
367 375 2.034685 GTGTATCTAGCATCGCTGGTGA 59.965 50.000 0.39 0.00 40.10 4.02
447 455 3.288242 GTTGTTCGTCTACGTTCGTGTA 58.712 45.455 8.14 0.00 40.80 2.90
454 462 3.241773 CGTCTACGTTCGTGTATCTTCGA 60.242 47.826 8.14 0.00 34.11 3.71
527 536 2.286045 TGCTGGTCCTATGGGGCA 60.286 61.111 0.78 0.00 39.39 5.36
554 563 0.109689 GACGACTTCCCGACTGTCTG 60.110 60.000 6.21 0.00 0.00 3.51
701 717 4.390603 GTGTTCGTTGTACTGCCATGATTA 59.609 41.667 0.00 0.00 0.00 1.75
712 728 9.797642 TGTACTGCCATGATTAAAGATGAATAT 57.202 29.630 0.00 0.00 0.00 1.28
833 857 0.305922 CATTGCCTAGCTTGCTACGC 59.694 55.000 13.86 13.86 0.00 4.42
967 997 2.128771 TTAAGCATGGAGTTGGAGGC 57.871 50.000 0.00 0.00 0.00 4.70
974 1004 0.535335 TGGAGTTGGAGGCACGTATC 59.465 55.000 0.00 0.00 0.00 2.24
1029 1272 4.271016 GTCCCATCCCATCCCGCC 62.271 72.222 0.00 0.00 0.00 6.13
1088 1355 1.442773 CCCATCCATCTCCATCACCT 58.557 55.000 0.00 0.00 0.00 4.00
1097 1364 0.911769 CTCCATCACCTGGGTAGCAA 59.088 55.000 0.00 0.00 45.98 3.91
1100 1373 1.453155 CATCACCTGGGTAGCAACAC 58.547 55.000 0.00 0.00 0.00 3.32
1245 1520 0.532417 GCTACTCCTCCTGCATGCAG 60.532 60.000 35.88 35.88 43.26 4.41
1404 1757 0.739813 ACGGCTATGACGACAAAGGC 60.740 55.000 0.00 0.00 35.20 4.35
1418 1771 2.026945 AAAGGCGGCAACAAAGGTGG 62.027 55.000 13.08 0.00 0.00 4.61
1424 1777 4.341502 CAACAAAGGTGGCGGCGG 62.342 66.667 9.78 0.00 0.00 6.13
1590 1957 6.006449 ACAAGAAACATGCATCCTACTCTTT 58.994 36.000 0.00 0.00 0.00 2.52
1593 1960 7.617041 AGAAACATGCATCCTACTCTTTTAC 57.383 36.000 0.00 0.00 0.00 2.01
1596 1963 9.331282 GAAACATGCATCCTACTCTTTTACTAT 57.669 33.333 0.00 0.00 0.00 2.12
1597 1964 8.894768 AACATGCATCCTACTCTTTTACTATC 57.105 34.615 0.00 0.00 0.00 2.08
1598 1965 8.256356 ACATGCATCCTACTCTTTTACTATCT 57.744 34.615 0.00 0.00 0.00 1.98
1599 1966 8.364142 ACATGCATCCTACTCTTTTACTATCTC 58.636 37.037 0.00 0.00 0.00 2.75
1600 1967 7.291411 TGCATCCTACTCTTTTACTATCTCC 57.709 40.000 0.00 0.00 0.00 3.71
1601 1968 6.016192 TGCATCCTACTCTTTTACTATCTCCG 60.016 42.308 0.00 0.00 0.00 4.63
1602 1969 6.016108 GCATCCTACTCTTTTACTATCTCCGT 60.016 42.308 0.00 0.00 0.00 4.69
1603 1970 7.470286 GCATCCTACTCTTTTACTATCTCCGTT 60.470 40.741 0.00 0.00 0.00 4.44
1604 1971 7.951347 TCCTACTCTTTTACTATCTCCGTTT 57.049 36.000 0.00 0.00 0.00 3.60
1605 1972 7.994194 TCCTACTCTTTTACTATCTCCGTTTC 58.006 38.462 0.00 0.00 0.00 2.78
1606 1973 7.833183 TCCTACTCTTTTACTATCTCCGTTTCT 59.167 37.037 0.00 0.00 0.00 2.52
1607 1974 9.118300 CCTACTCTTTTACTATCTCCGTTTCTA 57.882 37.037 0.00 0.00 0.00 2.10
1680 2047 5.841957 AGATGCATTTTAGGTGTGGATTC 57.158 39.130 0.00 0.00 0.00 2.52
1681 2048 5.263599 AGATGCATTTTAGGTGTGGATTCA 58.736 37.500 0.00 0.00 0.00 2.57
1682 2049 5.895534 AGATGCATTTTAGGTGTGGATTCAT 59.104 36.000 0.00 0.00 0.00 2.57
1683 2050 5.999205 TGCATTTTAGGTGTGGATTCATT 57.001 34.783 0.00 0.00 0.00 2.57
1684 2051 5.964758 TGCATTTTAGGTGTGGATTCATTC 58.035 37.500 0.00 0.00 0.00 2.67
1685 2052 5.479724 TGCATTTTAGGTGTGGATTCATTCA 59.520 36.000 0.00 0.00 0.00 2.57
1686 2053 6.154877 TGCATTTTAGGTGTGGATTCATTCAT 59.845 34.615 0.00 0.00 0.00 2.57
1687 2054 7.043565 GCATTTTAGGTGTGGATTCATTCATT 58.956 34.615 0.00 0.00 0.00 2.57
1688 2055 7.550196 GCATTTTAGGTGTGGATTCATTCATTT 59.450 33.333 0.00 0.00 0.00 2.32
1689 2056 9.439500 CATTTTAGGTGTGGATTCATTCATTTT 57.561 29.630 0.00 0.00 0.00 1.82
1690 2057 8.830201 TTTTAGGTGTGGATTCATTCATTTTG 57.170 30.769 0.00 0.00 0.00 2.44
1691 2058 4.824289 AGGTGTGGATTCATTCATTTTGC 58.176 39.130 0.00 0.00 0.00 3.68
1692 2059 4.529377 AGGTGTGGATTCATTCATTTTGCT 59.471 37.500 0.00 0.00 0.00 3.91
1693 2060 4.866486 GGTGTGGATTCATTCATTTTGCTC 59.134 41.667 0.00 0.00 0.00 4.26
1694 2061 4.866486 GTGTGGATTCATTCATTTTGCTCC 59.134 41.667 0.00 0.00 0.00 4.70
1695 2062 4.107622 GTGGATTCATTCATTTTGCTCCG 58.892 43.478 0.00 0.00 0.00 4.63
1696 2063 3.763360 TGGATTCATTCATTTTGCTCCGT 59.237 39.130 0.00 0.00 0.00 4.69
1697 2064 4.946772 TGGATTCATTCATTTTGCTCCGTA 59.053 37.500 0.00 0.00 0.00 4.02
1698 2065 5.593909 TGGATTCATTCATTTTGCTCCGTAT 59.406 36.000 0.00 0.00 0.00 3.06
1699 2066 5.916883 GGATTCATTCATTTTGCTCCGTATG 59.083 40.000 0.00 0.00 0.00 2.39
1700 2067 5.895636 TTCATTCATTTTGCTCCGTATGT 57.104 34.783 0.00 0.00 0.00 2.29
1701 2068 6.993786 TTCATTCATTTTGCTCCGTATGTA 57.006 33.333 0.00 0.00 0.00 2.29
1702 2069 6.603237 TCATTCATTTTGCTCCGTATGTAG 57.397 37.500 0.00 0.00 0.00 2.74
1703 2070 6.112734 TCATTCATTTTGCTCCGTATGTAGT 58.887 36.000 0.00 0.00 0.00 2.73
1704 2071 7.269316 TCATTCATTTTGCTCCGTATGTAGTA 58.731 34.615 0.00 0.00 0.00 1.82
1705 2072 6.897259 TTCATTTTGCTCCGTATGTAGTAC 57.103 37.500 0.00 0.00 0.00 2.73
1706 2073 5.968254 TCATTTTGCTCCGTATGTAGTACA 58.032 37.500 5.24 5.24 32.61 2.90
1707 2074 6.578944 TCATTTTGCTCCGTATGTAGTACAT 58.421 36.000 19.36 19.36 42.35 2.29
1708 2075 6.700081 TCATTTTGCTCCGTATGTAGTACATC 59.300 38.462 19.01 10.11 39.88 3.06
1709 2076 5.847111 TTTGCTCCGTATGTAGTACATCT 57.153 39.130 19.01 0.09 39.88 2.90
1710 2077 6.947644 TTTGCTCCGTATGTAGTACATCTA 57.052 37.500 19.01 0.13 39.88 1.98
1711 2078 6.555812 TTGCTCCGTATGTAGTACATCTAG 57.444 41.667 19.01 12.66 39.88 2.43
1712 2079 5.618236 TGCTCCGTATGTAGTACATCTAGT 58.382 41.667 19.01 0.00 39.88 2.57
1713 2080 5.469084 TGCTCCGTATGTAGTACATCTAGTG 59.531 44.000 19.01 10.44 39.88 2.74
1714 2081 5.699915 GCTCCGTATGTAGTACATCTAGTGA 59.300 44.000 19.01 9.19 39.88 3.41
1715 2082 6.204301 GCTCCGTATGTAGTACATCTAGTGAA 59.796 42.308 19.01 0.00 39.88 3.18
1716 2083 7.255035 GCTCCGTATGTAGTACATCTAGTGAAA 60.255 40.741 19.01 0.00 39.88 2.69
1717 2084 8.687292 TCCGTATGTAGTACATCTAGTGAAAT 57.313 34.615 19.01 0.00 39.88 2.17
1718 2085 8.781196 TCCGTATGTAGTACATCTAGTGAAATC 58.219 37.037 19.01 0.00 39.88 2.17
1719 2086 8.784994 CCGTATGTAGTACATCTAGTGAAATCT 58.215 37.037 19.01 0.00 39.88 2.40
1720 2087 9.814507 CGTATGTAGTACATCTAGTGAAATCTC 57.185 37.037 19.01 0.00 39.88 2.75
1724 2091 9.901172 TGTAGTACATCTAGTGAAATCTCTACA 57.099 33.333 0.00 0.00 33.27 2.74
1730 2097 9.030452 ACATCTAGTGAAATCTCTACAAAGACT 57.970 33.333 0.00 0.00 0.00 3.24
1731 2098 9.868277 CATCTAGTGAAATCTCTACAAAGACTT 57.132 33.333 0.00 0.00 0.00 3.01
1734 2101 9.575783 CTAGTGAAATCTCTACAAAGACTTACC 57.424 37.037 0.00 0.00 0.00 2.85
1735 2102 8.196378 AGTGAAATCTCTACAAAGACTTACCT 57.804 34.615 0.00 0.00 0.00 3.08
1736 2103 8.652290 AGTGAAATCTCTACAAAGACTTACCTT 58.348 33.333 0.00 0.00 0.00 3.50
1737 2104 9.274206 GTGAAATCTCTACAAAGACTTACCTTT 57.726 33.333 0.00 0.00 36.87 3.11
1743 2110 9.978044 TCTCTACAAAGACTTACCTTTAAGAAC 57.022 33.333 0.00 0.00 37.49 3.01
1744 2111 8.807667 TCTACAAAGACTTACCTTTAAGAACG 57.192 34.615 0.00 0.00 37.49 3.95
1745 2112 6.856135 ACAAAGACTTACCTTTAAGAACGG 57.144 37.500 0.00 0.00 37.49 4.44
1746 2113 6.585416 ACAAAGACTTACCTTTAAGAACGGA 58.415 36.000 0.00 0.00 37.49 4.69
1747 2114 6.704937 ACAAAGACTTACCTTTAAGAACGGAG 59.295 38.462 0.00 0.00 37.49 4.63
1748 2115 5.402997 AGACTTACCTTTAAGAACGGAGG 57.597 43.478 0.00 0.00 37.49 4.30
1749 2116 4.222366 AGACTTACCTTTAAGAACGGAGGG 59.778 45.833 0.00 0.00 37.49 4.30
1750 2117 4.162651 ACTTACCTTTAAGAACGGAGGGA 58.837 43.478 0.00 0.00 37.49 4.20
1751 2118 4.222366 ACTTACCTTTAAGAACGGAGGGAG 59.778 45.833 0.00 0.00 37.49 4.30
1752 2119 2.617658 ACCTTTAAGAACGGAGGGAGT 58.382 47.619 0.00 0.00 33.51 3.85
1753 2120 3.782992 ACCTTTAAGAACGGAGGGAGTA 58.217 45.455 0.00 0.00 33.51 2.59
1754 2121 3.768215 ACCTTTAAGAACGGAGGGAGTAG 59.232 47.826 0.00 0.00 33.51 2.57
1755 2122 3.768215 CCTTTAAGAACGGAGGGAGTAGT 59.232 47.826 0.00 0.00 0.00 2.73
1756 2123 4.952335 CCTTTAAGAACGGAGGGAGTAGTA 59.048 45.833 0.00 0.00 0.00 1.82
1757 2124 5.597594 CCTTTAAGAACGGAGGGAGTAGTAT 59.402 44.000 0.00 0.00 0.00 2.12
1758 2125 6.774656 CCTTTAAGAACGGAGGGAGTAGTATA 59.225 42.308 0.00 0.00 0.00 1.47
1759 2126 7.450944 CCTTTAAGAACGGAGGGAGTAGTATAT 59.549 40.741 0.00 0.00 0.00 0.86
1760 2127 7.756395 TTAAGAACGGAGGGAGTAGTATATG 57.244 40.000 0.00 0.00 0.00 1.78
1826 2193 1.633945 AGGTAAACGAGGGGATTGCTT 59.366 47.619 0.00 0.00 0.00 3.91
1898 2265 1.614241 CCGGGTCCAACACCTCCTAG 61.614 65.000 0.00 0.00 45.95 3.02
1936 2303 1.987807 ATCACCTCCGAAGCCCATGG 61.988 60.000 4.14 4.14 0.00 3.66
1978 2347 4.489771 AAGCCATCCCCGCCGAAG 62.490 66.667 0.00 0.00 0.00 3.79
2051 2456 2.489971 CAACAACTGATGGGTGTACGT 58.510 47.619 0.00 0.00 46.43 3.57
2052 2457 2.450609 ACAACTGATGGGTGTACGTC 57.549 50.000 0.00 0.00 45.12 4.34
2053 2458 1.336517 ACAACTGATGGGTGTACGTCG 60.337 52.381 0.00 0.00 45.12 5.12
2054 2459 0.245539 AACTGATGGGTGTACGTCGG 59.754 55.000 0.00 0.00 38.45 4.79
2055 2460 0.896940 ACTGATGGGTGTACGTCGGT 60.897 55.000 0.00 0.00 40.29 4.69
2056 2461 1.097232 CTGATGGGTGTACGTCGGTA 58.903 55.000 0.00 0.00 0.00 4.02
2057 2462 5.221918 AACTGATGGGTGTACGTCGGTAC 62.222 52.174 0.00 0.00 43.35 3.34
2093 2498 7.485913 GTCTATGCACACATACATTCAAAAAGG 59.514 37.037 0.00 0.00 37.74 3.11
2094 2499 5.781210 TGCACACATACATTCAAAAAGGA 57.219 34.783 0.00 0.00 0.00 3.36
2095 2500 5.527951 TGCACACATACATTCAAAAAGGAC 58.472 37.500 0.00 0.00 0.00 3.85
2096 2501 4.616802 GCACACATACATTCAAAAAGGACG 59.383 41.667 0.00 0.00 0.00 4.79
2098 2503 6.611381 CACACATACATTCAAAAAGGACGAT 58.389 36.000 0.00 0.00 0.00 3.73
2138 2584 6.546395 CGCCCTATATGATTGCTACATTTTC 58.454 40.000 0.00 0.00 0.00 2.29
2172 2618 9.503427 CGACAAAGGATGAATTTTATTTACTCC 57.497 33.333 0.00 0.00 0.00 3.85
2176 2622 9.768215 AAAGGATGAATTTTATTTACTCCCTCA 57.232 29.630 0.00 0.00 0.00 3.86
2181 2627 9.713684 ATGAATTTTATTTACTCCCTCAATCCA 57.286 29.630 0.00 0.00 0.00 3.41
2182 2628 9.713684 TGAATTTTATTTACTCCCTCAATCCAT 57.286 29.630 0.00 0.00 0.00 3.41
2227 2674 9.838339 ATATTTTCGAGATGGTCTTTGACTATT 57.162 29.630 0.00 0.00 34.02 1.73
2327 2774 5.707764 TGGTATGCTTTGTGTAACTTGCATA 59.292 36.000 0.00 0.00 42.30 3.14
2378 2825 4.813296 AAGTTAGCCTCGAAAAACACAG 57.187 40.909 0.00 0.00 0.00 3.66
2387 2834 2.633967 TCGAAAAACACAGTAGGCCCTA 59.366 45.455 0.00 0.00 0.00 3.53
2400 2847 7.952930 CACAGTAGGCCCTATATAGATGGATAT 59.047 40.741 11.53 0.00 0.00 1.63
2467 2914 1.216977 CACACCCGCCTTCGTCATA 59.783 57.895 0.00 0.00 0.00 2.15
2494 2941 1.270907 AGCCCACAACCAACACAAAA 58.729 45.000 0.00 0.00 0.00 2.44
2500 2947 3.062763 CACAACCAACACAAAAGCACAA 58.937 40.909 0.00 0.00 0.00 3.33
2513 2960 9.471084 ACACAAAAGCACAAATATACCTAAAAC 57.529 29.630 0.00 0.00 0.00 2.43
2518 2965 7.645058 AGCACAAATATACCTAAAACATGCT 57.355 32.000 0.00 0.00 33.86 3.79
2549 2996 7.547227 AGAGCAAAGTCATACAAAAACAAAGT 58.453 30.769 0.00 0.00 0.00 2.66
2561 3008 6.879400 ACAAAAACAAAGTTATGCCTAACCA 58.121 32.000 8.11 0.00 38.40 3.67
2563 3010 7.824779 ACAAAAACAAAGTTATGCCTAACCAAA 59.175 29.630 8.11 0.00 38.40 3.28
2611 3061 9.383519 CAACAAAGTACTACAATGACCATATCT 57.616 33.333 0.00 0.00 0.00 1.98
2615 3065 6.753180 AGTACTACAATGACCATATCTGCAG 58.247 40.000 7.63 7.63 0.00 4.41
2627 3077 4.262765 CCATATCTGCAGCAACCATCTCTA 60.263 45.833 9.47 0.00 0.00 2.43
2638 3088 4.637534 GCAACCATCTCTATGACACAATGT 59.362 41.667 0.00 0.00 34.84 2.71
2658 3108 6.808008 ATGTTTGCTACATATGGACATAGC 57.192 37.500 13.50 13.50 45.62 2.97
2769 3219 1.128692 GCCATGTGTCGAGTTGTAAGC 59.871 52.381 0.00 0.00 0.00 3.09
2771 3221 2.412870 CATGTGTCGAGTTGTAAGCCA 58.587 47.619 0.00 0.00 0.00 4.75
2773 3223 0.782384 GTGTCGAGTTGTAAGCCACG 59.218 55.000 0.00 0.00 0.00 4.94
2774 3224 0.386476 TGTCGAGTTGTAAGCCACGT 59.614 50.000 0.00 0.00 0.00 4.49
2787 3237 3.428413 AGCCACGTGTAATTTTAGGGT 57.572 42.857 15.65 0.00 0.00 4.34
2796 3246 5.295045 CGTGTAATTTTAGGGTAATCGGCTT 59.705 40.000 0.00 0.00 0.00 4.35
2798 3248 7.517259 CGTGTAATTTTAGGGTAATCGGCTTAC 60.517 40.741 0.00 0.00 39.25 2.34
2816 3266 6.934561 GCTTACAAGAGTTTAAGCCAAATG 57.065 37.500 2.52 0.00 42.94 2.32
2822 3272 7.425606 ACAAGAGTTTAAGCCAAATGTTACAG 58.574 34.615 0.00 0.00 0.00 2.74
2826 3276 6.745116 AGTTTAAGCCAAATGTTACAGGAAC 58.255 36.000 0.00 0.00 38.65 3.62
2844 3294 4.038642 AGGAACAATACACGGCAACAAAAT 59.961 37.500 0.00 0.00 0.00 1.82
2845 3295 4.149747 GGAACAATACACGGCAACAAAATG 59.850 41.667 0.00 0.00 0.00 2.32
2846 3296 4.576216 ACAATACACGGCAACAAAATGA 57.424 36.364 0.00 0.00 0.00 2.57
2847 3297 5.132897 ACAATACACGGCAACAAAATGAT 57.867 34.783 0.00 0.00 0.00 2.45
2848 3298 5.160641 ACAATACACGGCAACAAAATGATC 58.839 37.500 0.00 0.00 0.00 2.92
2849 3299 5.048083 ACAATACACGGCAACAAAATGATCT 60.048 36.000 0.00 0.00 0.00 2.75
2850 3300 3.559238 ACACGGCAACAAAATGATCTC 57.441 42.857 0.00 0.00 0.00 2.75
2853 3303 1.795162 CGGCAACAAAATGATCTCCGC 60.795 52.381 0.00 0.00 0.00 5.54
2857 3308 4.098416 GCAACAAAATGATCTCCGCTTAC 58.902 43.478 0.00 0.00 0.00 2.34
2893 3344 3.225940 AGAGGAGCCAAGAAAAAGGTTG 58.774 45.455 0.00 0.00 0.00 3.77
2895 3346 1.344438 GGAGCCAAGAAAAAGGTTGGG 59.656 52.381 3.41 0.00 43.11 4.12
2902 3353 5.163447 GCCAAGAAAAAGGTTGGGATATACC 60.163 44.000 0.00 0.00 43.11 2.73
2904 3355 6.127451 CCAAGAAAAAGGTTGGGATATACCAC 60.127 42.308 6.02 1.95 41.03 4.16
2925 3376 4.872691 CACAAAAGATCTCGGCTTACAGAT 59.127 41.667 0.00 0.00 31.70 2.90
2934 3385 1.398390 CGGCTTACAGATGTTCCTTGC 59.602 52.381 0.00 0.00 0.00 4.01
2936 3387 2.619074 GGCTTACAGATGTTCCTTGCCT 60.619 50.000 0.00 0.00 35.44 4.75
2961 3412 3.252484 GTCGTCGGCGCGCTTAAT 61.252 61.111 32.29 0.00 38.14 1.40
2962 3413 3.251763 TCGTCGGCGCGCTTAATG 61.252 61.111 32.29 20.40 38.14 1.90
2971 3422 2.408704 GGCGCGCTTAATGTCTACTATG 59.591 50.000 32.29 0.00 0.00 2.23
2972 3423 3.305964 GCGCGCTTAATGTCTACTATGA 58.694 45.455 26.67 0.00 0.00 2.15
2989 3440 5.974108 ACTATGACAGCGTTTGGTATAAGT 58.026 37.500 0.00 0.00 0.00 2.24
2990 3441 6.403878 ACTATGACAGCGTTTGGTATAAGTT 58.596 36.000 0.00 0.00 0.00 2.66
3000 3451 6.183360 GCGTTTGGTATAAGTTGAGTACACTC 60.183 42.308 2.29 2.29 43.15 3.51
3006 3457 6.540189 GGTATAAGTTGAGTACACTCCGTCTA 59.460 42.308 6.91 0.00 42.20 2.59
3007 3458 7.228308 GGTATAAGTTGAGTACACTCCGTCTAT 59.772 40.741 6.91 2.79 42.20 1.98
3008 3459 5.564048 AAGTTGAGTACACTCCGTCTATC 57.436 43.478 6.91 0.00 42.20 2.08
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.307776 TGTCTCCTTTTCTCTCTCTGTAGAA 58.692 40.000 0.00 0.00 0.00 2.10
1 2 5.882040 TGTCTCCTTTTCTCTCTCTGTAGA 58.118 41.667 0.00 0.00 0.00 2.59
2 3 6.152661 ACATGTCTCCTTTTCTCTCTCTGTAG 59.847 42.308 0.00 0.00 0.00 2.74
3 4 6.013379 ACATGTCTCCTTTTCTCTCTCTGTA 58.987 40.000 0.00 0.00 0.00 2.74
4 5 4.837860 ACATGTCTCCTTTTCTCTCTCTGT 59.162 41.667 0.00 0.00 0.00 3.41
5 6 5.404466 ACATGTCTCCTTTTCTCTCTCTG 57.596 43.478 0.00 0.00 0.00 3.35
6 7 6.013379 TGTACATGTCTCCTTTTCTCTCTCT 58.987 40.000 0.00 0.00 0.00 3.10
7 8 6.274157 TGTACATGTCTCCTTTTCTCTCTC 57.726 41.667 0.00 0.00 0.00 3.20
8 9 6.672266 TTGTACATGTCTCCTTTTCTCTCT 57.328 37.500 0.00 0.00 0.00 3.10
9 10 6.370166 CCTTTGTACATGTCTCCTTTTCTCTC 59.630 42.308 0.00 0.00 0.00 3.20
10 11 6.234177 CCTTTGTACATGTCTCCTTTTCTCT 58.766 40.000 0.00 0.00 0.00 3.10
11 12 5.412904 CCCTTTGTACATGTCTCCTTTTCTC 59.587 44.000 0.00 0.00 0.00 2.87
12 13 5.316987 CCCTTTGTACATGTCTCCTTTTCT 58.683 41.667 0.00 0.00 0.00 2.52
13 14 4.459337 CCCCTTTGTACATGTCTCCTTTTC 59.541 45.833 0.00 0.00 0.00 2.29
14 15 4.407365 CCCCTTTGTACATGTCTCCTTTT 58.593 43.478 0.00 0.00 0.00 2.27
15 16 3.814316 GCCCCTTTGTACATGTCTCCTTT 60.814 47.826 0.00 0.00 0.00 3.11
16 17 2.290960 GCCCCTTTGTACATGTCTCCTT 60.291 50.000 0.00 0.00 0.00 3.36
17 18 1.282157 GCCCCTTTGTACATGTCTCCT 59.718 52.381 0.00 0.00 0.00 3.69
18 19 1.751437 GCCCCTTTGTACATGTCTCC 58.249 55.000 0.00 0.00 0.00 3.71
19 20 1.369625 CGCCCCTTTGTACATGTCTC 58.630 55.000 0.00 0.00 0.00 3.36
20 21 0.676782 GCGCCCCTTTGTACATGTCT 60.677 55.000 0.00 0.00 0.00 3.41
21 22 0.958382 TGCGCCCCTTTGTACATGTC 60.958 55.000 4.18 0.00 0.00 3.06
22 23 1.074072 TGCGCCCCTTTGTACATGT 59.926 52.632 4.18 2.69 0.00 3.21
23 24 0.960364 AGTGCGCCCCTTTGTACATG 60.960 55.000 4.18 0.00 0.00 3.21
24 25 0.251165 AAGTGCGCCCCTTTGTACAT 60.251 50.000 4.18 0.00 0.00 2.29
25 26 0.466555 AAAGTGCGCCCCTTTGTACA 60.467 50.000 18.08 0.00 31.17 2.90
26 27 0.240145 GAAAGTGCGCCCCTTTGTAC 59.760 55.000 22.22 4.65 32.47 2.90
27 28 0.109723 AGAAAGTGCGCCCCTTTGTA 59.890 50.000 22.22 0.00 32.47 2.41
28 29 0.755327 AAGAAAGTGCGCCCCTTTGT 60.755 50.000 22.22 17.01 32.47 2.83
29 30 0.389025 AAAGAAAGTGCGCCCCTTTG 59.611 50.000 22.22 0.00 32.47 2.77
30 31 1.119684 AAAAGAAAGTGCGCCCCTTT 58.880 45.000 18.63 18.63 34.93 3.11
31 32 1.119684 AAAAAGAAAGTGCGCCCCTT 58.880 45.000 4.18 3.94 0.00 3.95
32 33 1.886542 CTAAAAAGAAAGTGCGCCCCT 59.113 47.619 4.18 0.00 0.00 4.79
33 34 1.067846 CCTAAAAAGAAAGTGCGCCCC 60.068 52.381 4.18 0.00 0.00 5.80
34 35 1.883926 TCCTAAAAAGAAAGTGCGCCC 59.116 47.619 4.18 0.00 0.00 6.13
35 36 2.812011 TCTCCTAAAAAGAAAGTGCGCC 59.188 45.455 4.18 0.00 0.00 6.53
36 37 3.664537 CGTCTCCTAAAAAGAAAGTGCGC 60.665 47.826 0.00 0.00 0.00 6.09
37 38 3.739300 TCGTCTCCTAAAAAGAAAGTGCG 59.261 43.478 0.00 0.00 0.00 5.34
38 39 4.377533 GCTCGTCTCCTAAAAAGAAAGTGC 60.378 45.833 0.00 0.00 0.00 4.40
39 40 4.750098 TGCTCGTCTCCTAAAAAGAAAGTG 59.250 41.667 0.00 0.00 0.00 3.16
40 41 4.957296 TGCTCGTCTCCTAAAAAGAAAGT 58.043 39.130 0.00 0.00 0.00 2.66
41 42 7.596749 TTATGCTCGTCTCCTAAAAAGAAAG 57.403 36.000 0.00 0.00 0.00 2.62
42 43 8.561738 AATTATGCTCGTCTCCTAAAAAGAAA 57.438 30.769 0.00 0.00 0.00 2.52
43 44 9.095065 GTAATTATGCTCGTCTCCTAAAAAGAA 57.905 33.333 0.00 0.00 0.00 2.52
44 45 8.255206 TGTAATTATGCTCGTCTCCTAAAAAGA 58.745 33.333 0.00 0.00 0.00 2.52
45 46 8.420374 TGTAATTATGCTCGTCTCCTAAAAAG 57.580 34.615 0.00 0.00 0.00 2.27
46 47 8.958119 ATGTAATTATGCTCGTCTCCTAAAAA 57.042 30.769 0.00 0.00 0.00 1.94
47 48 7.656137 GGATGTAATTATGCTCGTCTCCTAAAA 59.344 37.037 0.00 0.00 0.00 1.52
48 49 7.152645 GGATGTAATTATGCTCGTCTCCTAAA 58.847 38.462 0.00 0.00 0.00 1.85
49 50 6.569801 CGGATGTAATTATGCTCGTCTCCTAA 60.570 42.308 0.00 0.00 0.00 2.69
50 51 5.106277 CGGATGTAATTATGCTCGTCTCCTA 60.106 44.000 0.00 0.00 0.00 2.94
51 52 4.321304 CGGATGTAATTATGCTCGTCTCCT 60.321 45.833 0.00 0.00 0.00 3.69
52 53 3.921021 CGGATGTAATTATGCTCGTCTCC 59.079 47.826 0.00 0.00 0.00 3.71
53 54 4.795268 TCGGATGTAATTATGCTCGTCTC 58.205 43.478 0.00 0.00 0.00 3.36
54 55 4.848562 TCGGATGTAATTATGCTCGTCT 57.151 40.909 0.00 0.00 0.00 4.18
55 56 5.864474 AGATTCGGATGTAATTATGCTCGTC 59.136 40.000 0.00 0.00 0.00 4.20
56 57 5.784177 AGATTCGGATGTAATTATGCTCGT 58.216 37.500 0.00 0.00 0.00 4.18
57 58 5.289675 GGAGATTCGGATGTAATTATGCTCG 59.710 44.000 0.00 0.00 0.00 5.03
58 59 6.166279 TGGAGATTCGGATGTAATTATGCTC 58.834 40.000 0.00 0.00 0.00 4.26
59 60 6.114187 TGGAGATTCGGATGTAATTATGCT 57.886 37.500 0.00 0.00 0.00 3.79
60 61 6.820656 AGATGGAGATTCGGATGTAATTATGC 59.179 38.462 0.00 0.00 0.00 3.14
61 62 8.783833 AAGATGGAGATTCGGATGTAATTATG 57.216 34.615 0.00 0.00 0.00 1.90
62 63 9.442047 GAAAGATGGAGATTCGGATGTAATTAT 57.558 33.333 0.00 0.00 0.00 1.28
63 64 8.428852 TGAAAGATGGAGATTCGGATGTAATTA 58.571 33.333 0.00 0.00 0.00 1.40
64 65 7.282585 TGAAAGATGGAGATTCGGATGTAATT 58.717 34.615 0.00 0.00 0.00 1.40
65 66 6.830912 TGAAAGATGGAGATTCGGATGTAAT 58.169 36.000 0.00 0.00 0.00 1.89
66 67 6.233905 TGAAAGATGGAGATTCGGATGTAA 57.766 37.500 0.00 0.00 0.00 2.41
67 68 5.869649 TGAAAGATGGAGATTCGGATGTA 57.130 39.130 0.00 0.00 0.00 2.29
68 69 4.760530 TGAAAGATGGAGATTCGGATGT 57.239 40.909 0.00 0.00 0.00 3.06
69 70 4.024218 GCTTGAAAGATGGAGATTCGGATG 60.024 45.833 0.00 0.00 0.00 3.51
70 71 4.133078 GCTTGAAAGATGGAGATTCGGAT 58.867 43.478 0.00 0.00 0.00 4.18
71 72 3.055167 TGCTTGAAAGATGGAGATTCGGA 60.055 43.478 0.00 0.00 0.00 4.55
72 73 3.273434 TGCTTGAAAGATGGAGATTCGG 58.727 45.455 0.00 0.00 0.00 4.30
73 74 3.242673 GCTGCTTGAAAGATGGAGATTCG 60.243 47.826 0.00 0.00 0.00 3.34
74 75 3.066481 GGCTGCTTGAAAGATGGAGATTC 59.934 47.826 0.00 0.00 0.00 2.52
75 76 3.022406 GGCTGCTTGAAAGATGGAGATT 58.978 45.455 0.00 0.00 0.00 2.40
76 77 2.241685 AGGCTGCTTGAAAGATGGAGAT 59.758 45.455 0.00 0.00 0.00 2.75
77 78 1.632409 AGGCTGCTTGAAAGATGGAGA 59.368 47.619 0.00 0.00 0.00 3.71
78 79 2.015587 GAGGCTGCTTGAAAGATGGAG 58.984 52.381 0.00 0.00 0.00 3.86
79 80 1.340405 GGAGGCTGCTTGAAAGATGGA 60.340 52.381 0.00 0.00 0.00 3.41
80 81 1.101331 GGAGGCTGCTTGAAAGATGG 58.899 55.000 0.00 0.00 0.00 3.51
81 82 2.015587 GAGGAGGCTGCTTGAAAGATG 58.984 52.381 10.75 0.00 0.00 2.90
82 83 1.064832 GGAGGAGGCTGCTTGAAAGAT 60.065 52.381 10.75 0.00 0.00 2.40
83 84 0.326264 GGAGGAGGCTGCTTGAAAGA 59.674 55.000 10.75 0.00 0.00 2.52
88 89 1.970352 GAGGAGGAGGAGGCTGCTTG 61.970 65.000 10.75 0.00 0.00 4.01
89 90 1.688884 GAGGAGGAGGAGGCTGCTT 60.689 63.158 10.75 0.00 0.00 3.91
93 94 1.522917 TTGGAGAGGAGGAGGAGGCT 61.523 60.000 0.00 0.00 0.00 4.58
251 259 3.214328 CAGGACACAAACCTTAGCAAGT 58.786 45.455 0.00 0.00 35.35 3.16
306 314 3.699538 GGCCGGAAGACTTTTATTCCATT 59.300 43.478 5.05 0.00 44.39 3.16
349 357 1.270826 GCTCACCAGCGATGCTAGATA 59.729 52.381 0.00 0.00 36.40 1.98
350 358 0.033228 GCTCACCAGCGATGCTAGAT 59.967 55.000 0.00 0.00 36.40 1.98
361 369 0.675837 CACCTCCACATGCTCACCAG 60.676 60.000 0.00 0.00 0.00 4.00
367 375 0.322975 GAGACACACCTCCACATGCT 59.677 55.000 0.00 0.00 0.00 3.79
447 455 3.388024 TCGGAAGGATCCAAATCGAAGAT 59.612 43.478 15.82 0.00 46.97 2.40
527 536 0.179145 CGGGAAGTCGTCGTGCTAAT 60.179 55.000 0.00 0.00 0.00 1.73
554 563 0.040425 CGGGCACAACTTGTTGTAGC 60.040 55.000 17.26 19.69 33.17 3.58
799 822 3.763897 AGGCAATGTTATTTCCACCTGTC 59.236 43.478 0.00 0.00 0.00 3.51
833 857 1.952296 GAATGCATCTGGCTAAGTGGG 59.048 52.381 0.00 0.00 45.15 4.61
932 962 2.515947 TTAATTTGCGCGTGGCCGTC 62.516 55.000 8.43 0.00 42.61 4.79
967 997 2.655364 CTCCGGCAGCGATACGTG 60.655 66.667 0.00 0.00 0.00 4.49
996 1239 1.207593 GACCTGAACGTGCATGCAC 59.792 57.895 35.76 35.76 43.01 4.57
1029 1272 5.997746 CAGGAGGTGGTATATATGGTTGTTG 59.002 44.000 0.00 0.00 0.00 3.33
1088 1355 1.765904 TGAAGACTGTGTTGCTACCCA 59.234 47.619 0.00 0.00 0.00 4.51
1097 1364 1.672356 GCCGCCATGAAGACTGTGT 60.672 57.895 0.00 0.00 0.00 3.72
1100 1373 3.197790 CCGCCGCCATGAAGACTG 61.198 66.667 0.00 0.00 0.00 3.51
1106 1379 2.923426 GATCTTGACCGCCGCCATGA 62.923 60.000 0.00 0.00 0.00 3.07
1333 1683 0.321919 TTGTGGATGACAGCTGGAGC 60.322 55.000 19.93 6.69 42.49 4.70
1337 1687 1.069022 CGGTTTTGTGGATGACAGCTG 60.069 52.381 13.48 13.48 35.44 4.24
1343 1693 2.073056 CATCGTCGGTTTTGTGGATGA 58.927 47.619 0.00 0.00 34.65 2.92
1404 1757 4.341502 CCGCCACCTTTGTTGCCG 62.342 66.667 0.00 0.00 29.54 5.69
1418 1771 4.944372 CGTAGTCATCCCCGCCGC 62.944 72.222 0.00 0.00 0.00 6.53
1424 1777 5.008415 TCGAAGTATTTCTCGTAGTCATCCC 59.992 44.000 0.00 0.00 0.00 3.85
1429 1782 4.729564 GCACTCGAAGTATTTCTCGTAGTC 59.270 45.833 0.00 0.00 0.00 2.59
1654 2021 9.236006 GAATCCACACCTAAAATGCATCTATAT 57.764 33.333 0.00 0.00 0.00 0.86
1655 2022 8.217111 TGAATCCACACCTAAAATGCATCTATA 58.783 33.333 0.00 0.00 0.00 1.31
1656 2023 7.062322 TGAATCCACACCTAAAATGCATCTAT 58.938 34.615 0.00 0.00 0.00 1.98
1657 2024 6.422333 TGAATCCACACCTAAAATGCATCTA 58.578 36.000 0.00 0.00 0.00 1.98
1658 2025 5.263599 TGAATCCACACCTAAAATGCATCT 58.736 37.500 0.00 0.00 0.00 2.90
1659 2026 5.581126 TGAATCCACACCTAAAATGCATC 57.419 39.130 0.00 0.00 0.00 3.91
1660 2027 6.154877 TGAATGAATCCACACCTAAAATGCAT 59.845 34.615 0.00 0.00 0.00 3.96
1661 2028 5.479724 TGAATGAATCCACACCTAAAATGCA 59.520 36.000 0.00 0.00 0.00 3.96
1662 2029 5.964758 TGAATGAATCCACACCTAAAATGC 58.035 37.500 0.00 0.00 0.00 3.56
1663 2030 9.439500 AAAATGAATGAATCCACACCTAAAATG 57.561 29.630 0.00 0.00 0.00 2.32
1664 2031 9.439500 CAAAATGAATGAATCCACACCTAAAAT 57.561 29.630 0.00 0.00 0.00 1.82
1665 2032 7.387397 GCAAAATGAATGAATCCACACCTAAAA 59.613 33.333 0.00 0.00 0.00 1.52
1666 2033 6.873076 GCAAAATGAATGAATCCACACCTAAA 59.127 34.615 0.00 0.00 0.00 1.85
1667 2034 6.211184 AGCAAAATGAATGAATCCACACCTAA 59.789 34.615 0.00 0.00 0.00 2.69
1668 2035 5.716228 AGCAAAATGAATGAATCCACACCTA 59.284 36.000 0.00 0.00 0.00 3.08
1669 2036 4.529377 AGCAAAATGAATGAATCCACACCT 59.471 37.500 0.00 0.00 0.00 4.00
1670 2037 4.824289 AGCAAAATGAATGAATCCACACC 58.176 39.130 0.00 0.00 0.00 4.16
1671 2038 4.866486 GGAGCAAAATGAATGAATCCACAC 59.134 41.667 0.00 0.00 0.00 3.82
1672 2039 4.380761 CGGAGCAAAATGAATGAATCCACA 60.381 41.667 0.00 0.00 0.00 4.17
1673 2040 4.107622 CGGAGCAAAATGAATGAATCCAC 58.892 43.478 0.00 0.00 0.00 4.02
1674 2041 3.763360 ACGGAGCAAAATGAATGAATCCA 59.237 39.130 0.00 0.00 0.00 3.41
1675 2042 4.376340 ACGGAGCAAAATGAATGAATCC 57.624 40.909 0.00 0.00 0.00 3.01
1676 2043 6.498304 ACATACGGAGCAAAATGAATGAATC 58.502 36.000 0.00 0.00 0.00 2.52
1677 2044 6.455360 ACATACGGAGCAAAATGAATGAAT 57.545 33.333 0.00 0.00 0.00 2.57
1678 2045 5.895636 ACATACGGAGCAAAATGAATGAA 57.104 34.783 0.00 0.00 0.00 2.57
1679 2046 6.112734 ACTACATACGGAGCAAAATGAATGA 58.887 36.000 0.00 0.00 0.00 2.57
1680 2047 6.363577 ACTACATACGGAGCAAAATGAATG 57.636 37.500 0.00 0.00 0.00 2.67
1681 2048 7.045416 TGTACTACATACGGAGCAAAATGAAT 58.955 34.615 0.00 0.00 36.47 2.57
1682 2049 6.399743 TGTACTACATACGGAGCAAAATGAA 58.600 36.000 0.00 0.00 36.47 2.57
1683 2050 5.968254 TGTACTACATACGGAGCAAAATGA 58.032 37.500 0.00 0.00 36.47 2.57
1684 2051 6.701841 AGATGTACTACATACGGAGCAAAATG 59.298 38.462 1.45 0.00 39.27 2.32
1685 2052 6.817184 AGATGTACTACATACGGAGCAAAAT 58.183 36.000 1.45 0.00 39.27 1.82
1686 2053 6.216801 AGATGTACTACATACGGAGCAAAA 57.783 37.500 1.45 0.00 39.27 2.44
1687 2054 5.847111 AGATGTACTACATACGGAGCAAA 57.153 39.130 1.45 0.00 39.27 3.68
1688 2055 6.017357 CACTAGATGTACTACATACGGAGCAA 60.017 42.308 1.45 0.00 39.27 3.91
1689 2056 5.469084 CACTAGATGTACTACATACGGAGCA 59.531 44.000 1.45 0.00 39.27 4.26
1690 2057 5.699915 TCACTAGATGTACTACATACGGAGC 59.300 44.000 1.45 0.00 39.27 4.70
1691 2058 7.725818 TTCACTAGATGTACTACATACGGAG 57.274 40.000 1.45 0.98 39.27 4.63
1692 2059 8.687292 ATTTCACTAGATGTACTACATACGGA 57.313 34.615 1.45 0.00 39.27 4.69
1693 2060 8.784994 AGATTTCACTAGATGTACTACATACGG 58.215 37.037 1.45 0.00 39.27 4.02
1694 2061 9.814507 GAGATTTCACTAGATGTACTACATACG 57.185 37.037 1.45 0.00 39.27 3.06
1698 2065 9.901172 TGTAGAGATTTCACTAGATGTACTACA 57.099 33.333 0.00 0.00 34.91 2.74
1704 2071 9.030452 AGTCTTTGTAGAGATTTCACTAGATGT 57.970 33.333 0.00 0.00 0.00 3.06
1705 2072 9.868277 AAGTCTTTGTAGAGATTTCACTAGATG 57.132 33.333 0.00 0.00 0.00 2.90
1708 2075 9.575783 GGTAAGTCTTTGTAGAGATTTCACTAG 57.424 37.037 0.00 0.00 29.76 2.57
1709 2076 9.310449 AGGTAAGTCTTTGTAGAGATTTCACTA 57.690 33.333 0.00 0.00 29.76 2.74
1710 2077 8.196378 AGGTAAGTCTTTGTAGAGATTTCACT 57.804 34.615 0.00 0.00 29.76 3.41
1711 2078 8.834749 AAGGTAAGTCTTTGTAGAGATTTCAC 57.165 34.615 0.00 0.00 29.76 3.18
1717 2084 9.978044 GTTCTTAAAGGTAAGTCTTTGTAGAGA 57.022 33.333 0.00 0.00 38.33 3.10
1718 2085 8.913656 CGTTCTTAAAGGTAAGTCTTTGTAGAG 58.086 37.037 0.00 0.00 38.33 2.43
1719 2086 7.869429 CCGTTCTTAAAGGTAAGTCTTTGTAGA 59.131 37.037 0.00 0.00 38.33 2.59
1720 2087 7.869429 TCCGTTCTTAAAGGTAAGTCTTTGTAG 59.131 37.037 0.00 0.00 38.33 2.74
1721 2088 7.725251 TCCGTTCTTAAAGGTAAGTCTTTGTA 58.275 34.615 0.00 0.00 38.33 2.41
1722 2089 6.585416 TCCGTTCTTAAAGGTAAGTCTTTGT 58.415 36.000 0.00 0.00 38.33 2.83
1723 2090 6.147328 CCTCCGTTCTTAAAGGTAAGTCTTTG 59.853 42.308 0.00 0.00 38.33 2.77
1724 2091 6.228995 CCTCCGTTCTTAAAGGTAAGTCTTT 58.771 40.000 0.00 0.00 38.33 2.52
1725 2092 5.279859 CCCTCCGTTCTTAAAGGTAAGTCTT 60.280 44.000 0.00 0.00 38.33 3.01
1726 2093 4.222366 CCCTCCGTTCTTAAAGGTAAGTCT 59.778 45.833 0.00 0.00 38.33 3.24
1727 2094 4.221482 TCCCTCCGTTCTTAAAGGTAAGTC 59.779 45.833 0.00 0.00 38.33 3.01
1728 2095 4.162651 TCCCTCCGTTCTTAAAGGTAAGT 58.837 43.478 0.00 0.00 38.33 2.24
1729 2096 4.222366 ACTCCCTCCGTTCTTAAAGGTAAG 59.778 45.833 0.00 0.00 38.50 2.34
1730 2097 4.162651 ACTCCCTCCGTTCTTAAAGGTAA 58.837 43.478 0.00 0.00 0.00 2.85
1731 2098 3.782992 ACTCCCTCCGTTCTTAAAGGTA 58.217 45.455 0.00 0.00 0.00 3.08
1732 2099 2.617658 ACTCCCTCCGTTCTTAAAGGT 58.382 47.619 0.00 0.00 0.00 3.50
1733 2100 3.768215 ACTACTCCCTCCGTTCTTAAAGG 59.232 47.826 0.00 0.00 0.00 3.11
1734 2101 6.712179 ATACTACTCCCTCCGTTCTTAAAG 57.288 41.667 0.00 0.00 0.00 1.85
1735 2102 7.781693 ACATATACTACTCCCTCCGTTCTTAAA 59.218 37.037 0.00 0.00 0.00 1.52
1736 2103 7.293073 ACATATACTACTCCCTCCGTTCTTAA 58.707 38.462 0.00 0.00 0.00 1.85
1737 2104 6.845908 ACATATACTACTCCCTCCGTTCTTA 58.154 40.000 0.00 0.00 0.00 2.10
1738 2105 5.703310 ACATATACTACTCCCTCCGTTCTT 58.297 41.667 0.00 0.00 0.00 2.52
1739 2106 5.321934 ACATATACTACTCCCTCCGTTCT 57.678 43.478 0.00 0.00 0.00 3.01
1740 2107 6.658391 ACATACATATACTACTCCCTCCGTTC 59.342 42.308 0.00 0.00 0.00 3.95
1741 2108 6.550163 ACATACATATACTACTCCCTCCGTT 58.450 40.000 0.00 0.00 0.00 4.44
1742 2109 6.137104 ACATACATATACTACTCCCTCCGT 57.863 41.667 0.00 0.00 0.00 4.69
1743 2110 9.270640 GTATACATACATATACTACTCCCTCCG 57.729 40.741 0.00 0.00 35.82 4.63
1744 2111 9.270640 CGTATACATACATATACTACTCCCTCC 57.729 40.741 3.32 0.00 36.34 4.30
1745 2112 9.829507 ACGTATACATACATATACTACTCCCTC 57.170 37.037 3.32 0.00 36.34 4.30
1777 2144 1.170290 AAGGCAGCCGTGTTGGTTAC 61.170 55.000 5.55 0.00 41.21 2.50
1826 2193 1.543607 TTTGATCCCGCATGCTTTGA 58.456 45.000 17.13 9.54 0.00 2.69
1884 2251 1.615424 GGGCCTAGGAGGTGTTGGA 60.615 63.158 14.75 0.00 37.80 3.53
1887 2254 1.926426 GCATGGGCCTAGGAGGTGTT 61.926 60.000 14.75 0.00 37.80 3.32
2051 2456 3.027170 GACCTTCGTCGCGTACCGA 62.027 63.158 5.77 10.13 45.15 4.69
2052 2457 1.695893 TAGACCTTCGTCGCGTACCG 61.696 60.000 5.77 7.66 44.28 4.02
2053 2458 0.659957 ATAGACCTTCGTCGCGTACC 59.340 55.000 5.77 0.00 44.28 3.34
2054 2459 1.739618 CATAGACCTTCGTCGCGTAC 58.260 55.000 5.77 1.94 44.28 3.67
2055 2460 0.028505 GCATAGACCTTCGTCGCGTA 59.971 55.000 5.77 0.00 44.28 4.42
2056 2461 1.226603 GCATAGACCTTCGTCGCGT 60.227 57.895 5.77 0.00 44.28 6.01
2057 2462 1.226575 TGCATAGACCTTCGTCGCG 60.227 57.895 0.00 0.00 44.28 5.87
2058 2463 0.457853 TGTGCATAGACCTTCGTCGC 60.458 55.000 0.00 0.00 44.28 5.19
2059 2464 1.269166 GTGTGCATAGACCTTCGTCG 58.731 55.000 0.00 0.00 44.28 5.12
2060 2465 2.363788 TGTGTGCATAGACCTTCGTC 57.636 50.000 0.00 0.00 39.50 4.20
2061 2466 3.194755 TGTATGTGTGCATAGACCTTCGT 59.805 43.478 0.00 0.00 38.17 3.85
2062 2467 3.780902 TGTATGTGTGCATAGACCTTCG 58.219 45.455 0.00 0.00 38.17 3.79
2063 2468 5.817296 TGAATGTATGTGTGCATAGACCTTC 59.183 40.000 0.00 5.36 38.17 3.46
2064 2469 5.744171 TGAATGTATGTGTGCATAGACCTT 58.256 37.500 0.00 0.00 38.17 3.50
2093 2498 5.175856 GGCGCCTTCATATATTCATATCGTC 59.824 44.000 22.15 0.00 0.00 4.20
2094 2499 5.050490 GGCGCCTTCATATATTCATATCGT 58.950 41.667 22.15 0.00 0.00 3.73
2095 2500 4.449068 GGGCGCCTTCATATATTCATATCG 59.551 45.833 28.56 0.00 0.00 2.92
2096 2501 5.615289 AGGGCGCCTTCATATATTCATATC 58.385 41.667 28.56 2.43 0.00 1.63
2098 2503 6.747414 ATAGGGCGCCTTCATATATTCATA 57.253 37.500 28.56 0.00 34.61 2.15
2111 2557 0.987294 AGCAATCATATAGGGCGCCT 59.013 50.000 28.56 15.07 37.71 5.52
2203 2649 7.824289 TCAATAGTCAAAGACCATCTCGAAAAT 59.176 33.333 0.00 0.00 32.18 1.82
2280 2727 3.430895 TCAAATTCGTACGTGAAAGGAGC 59.569 43.478 16.05 0.00 0.00 4.70
2294 2741 5.401550 ACACAAAGCATACCATCAAATTCG 58.598 37.500 0.00 0.00 0.00 3.34
2343 2790 5.381757 AGGCTAACTTTGACCACATGTTAA 58.618 37.500 0.00 0.00 31.00 2.01
2355 2802 4.915704 TGTGTTTTTCGAGGCTAACTTTG 58.084 39.130 0.00 0.00 0.00 2.77
2400 2847 6.209986 TGATCCTTCGTTTTGAGTACTTCCTA 59.790 38.462 0.00 0.00 0.00 2.94
2416 2863 4.032900 CGTTTGTATCCACTTGATCCTTCG 59.967 45.833 0.00 0.00 34.76 3.79
2439 2886 2.809601 CGGGTGTGCGCTCACTAC 60.810 66.667 33.61 26.30 43.49 2.73
2459 2906 3.101437 TGGGCTTCCTAACTATGACGAA 58.899 45.455 0.00 0.00 0.00 3.85
2467 2914 1.145571 TGGTTGTGGGCTTCCTAACT 58.854 50.000 0.00 0.00 32.68 2.24
2494 2941 7.416664 CCAGCATGTTTTAGGTATATTTGTGCT 60.417 37.037 0.00 0.00 38.44 4.40
2500 2947 7.341769 TCTTTGCCAGCATGTTTTAGGTATATT 59.658 33.333 0.00 0.00 0.00 1.28
2513 2960 1.000506 ACTTTGCTCTTTGCCAGCATG 59.999 47.619 0.00 0.00 46.24 4.06
2518 2965 3.485394 TGTATGACTTTGCTCTTTGCCA 58.515 40.909 0.00 0.00 42.00 4.92
2570 3017 6.241207 ACTTTGTTGATCACTGTTTATCGG 57.759 37.500 0.00 0.00 0.00 4.18
2571 3018 8.018677 AGTACTTTGTTGATCACTGTTTATCG 57.981 34.615 0.00 0.00 0.00 2.92
2573 3020 9.772973 TGTAGTACTTTGTTGATCACTGTTTAT 57.227 29.630 0.00 0.00 0.00 1.40
2574 3021 9.602568 TTGTAGTACTTTGTTGATCACTGTTTA 57.397 29.630 0.00 0.00 0.00 2.01
2586 3036 9.383519 CAGATATGGTCATTGTAGTACTTTGTT 57.616 33.333 0.00 0.00 0.00 2.83
2611 3061 2.236893 TGTCATAGAGATGGTTGCTGCA 59.763 45.455 0.00 0.00 33.49 4.41
2615 3065 4.637534 ACATTGTGTCATAGAGATGGTTGC 59.362 41.667 0.00 0.00 33.49 4.17
2638 3088 9.219603 GAATAAGCTATGTCCATATGTAGCAAA 57.780 33.333 19.53 10.75 41.44 3.68
2688 3138 8.153550 CCAGTTTAGTTAGAGCTGATGGATTAT 58.846 37.037 0.00 0.00 0.00 1.28
2769 3219 5.006941 CCGATTACCCTAAAATTACACGTGG 59.993 44.000 21.57 0.00 0.00 4.94
2771 3221 4.571984 GCCGATTACCCTAAAATTACACGT 59.428 41.667 0.00 0.00 0.00 4.49
2773 3223 6.688637 AAGCCGATTACCCTAAAATTACAC 57.311 37.500 0.00 0.00 0.00 2.90
2774 3224 7.337167 TGTAAGCCGATTACCCTAAAATTACA 58.663 34.615 4.16 0.00 42.74 2.41
2787 3237 6.657836 GCTTAAACTCTTGTAAGCCGATTA 57.342 37.500 4.44 0.00 44.19 1.75
2796 3246 8.453238 TGTAACATTTGGCTTAAACTCTTGTA 57.547 30.769 0.00 0.00 0.00 2.41
2798 3248 6.863126 CCTGTAACATTTGGCTTAAACTCTTG 59.137 38.462 0.00 0.00 0.00 3.02
2816 3266 3.068560 TGCCGTGTATTGTTCCTGTAAC 58.931 45.455 0.00 0.00 38.67 2.50
2822 3272 3.357166 TTTGTTGCCGTGTATTGTTCC 57.643 42.857 0.00 0.00 0.00 3.62
2826 3276 5.401550 AGATCATTTTGTTGCCGTGTATTG 58.598 37.500 0.00 0.00 0.00 1.90
2829 3279 3.438781 GGAGATCATTTTGTTGCCGTGTA 59.561 43.478 0.00 0.00 0.00 2.90
2844 3294 6.423905 GCTTATGTTTATGTAAGCGGAGATCA 59.576 38.462 0.00 0.00 42.12 2.92
2845 3295 6.822506 GCTTATGTTTATGTAAGCGGAGATC 58.177 40.000 1.89 0.00 42.12 2.75
2846 3296 6.787085 GCTTATGTTTATGTAAGCGGAGAT 57.213 37.500 1.89 0.00 42.12 2.75
2853 3303 6.513180 TCCTCTCGGCTTATGTTTATGTAAG 58.487 40.000 0.00 0.00 0.00 2.34
2857 3308 3.743396 GCTCCTCTCGGCTTATGTTTATG 59.257 47.826 0.00 0.00 0.00 1.90
2893 3344 5.238583 CCGAGATCTTTTGTGGTATATCCC 58.761 45.833 0.00 0.00 34.77 3.85
2895 3346 5.542779 AGCCGAGATCTTTTGTGGTATATC 58.457 41.667 0.00 0.00 0.00 1.63
2902 3353 4.245660 TCTGTAAGCCGAGATCTTTTGTG 58.754 43.478 0.00 0.00 0.00 3.33
2904 3355 4.872691 ACATCTGTAAGCCGAGATCTTTTG 59.127 41.667 0.00 0.00 0.00 2.44
2944 3395 3.252484 ATTAAGCGCGCCGACGAC 61.252 61.111 30.33 0.00 43.93 4.34
2947 3398 0.868602 TAGACATTAAGCGCGCCGAC 60.869 55.000 30.33 12.37 0.00 4.79
2961 3412 3.257375 ACCAAACGCTGTCATAGTAGACA 59.743 43.478 0.00 0.00 45.64 3.41
2962 3413 3.846360 ACCAAACGCTGTCATAGTAGAC 58.154 45.455 0.00 0.00 38.99 2.59
2971 3422 4.689345 ACTCAACTTATACCAAACGCTGTC 59.311 41.667 0.00 0.00 0.00 3.51
2972 3423 4.638304 ACTCAACTTATACCAAACGCTGT 58.362 39.130 0.00 0.00 0.00 4.40
2975 3426 5.636543 AGTGTACTCAACTTATACCAAACGC 59.363 40.000 0.00 0.00 0.00 4.84
2980 3431 5.012239 ACGGAGTGTACTCAACTTATACCA 58.988 41.667 13.51 0.00 44.60 3.25
3000 3451 7.329717 GTGAAAATATAAGCCAGAGATAGACGG 59.670 40.741 0.00 0.00 0.00 4.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.