Multiple sequence alignment - TraesCS6B01G038700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G038700 chr6B 100.000 3146 0 0 1 3146 23036576 23039721 0.000000e+00 5810
1 TraesCS6B01G038700 chr6B 84.490 2205 290 29 1 2161 22988685 22990881 0.000000e+00 2130
2 TraesCS6B01G038700 chr6B 83.333 1050 155 15 716 1756 23002498 23003536 0.000000e+00 952
3 TraesCS6B01G038700 chr6B 78.251 892 174 11 2 883 5736697 5737578 3.550000e-154 555
4 TraesCS6B01G038700 chr6B 88.060 134 14 2 2938 3070 22994531 22994663 1.170000e-34 158
5 TraesCS6B01G038700 chr6D 83.656 1756 266 20 531 2275 12340184 12338439 0.000000e+00 1633
6 TraesCS6B01G038700 chr6D 88.337 523 53 7 1 516 12340753 12340232 3.450000e-174 621
7 TraesCS6B01G038700 chr6D 71.522 762 172 31 807 1539 425067937 425067192 2.510000e-36 163
8 TraesCS6B01G038700 chr6A 87.039 841 105 4 531 1369 13875826 13876664 0.000000e+00 946
9 TraesCS6B01G038700 chr6A 88.359 524 51 6 1 516 13875257 13875778 3.450000e-174 621
10 TraesCS6B01G038700 chr6A 74.066 482 97 24 2 467 556563755 556563286 4.170000e-39 172
11 TraesCS6B01G038700 chrUn 74.449 1589 343 41 1 1547 80088710 80090277 7.410000e-176 627
12 TraesCS6B01G038700 chrUn 74.016 1397 309 39 190 1547 376485072 376486453 1.290000e-143 520
13 TraesCS6B01G038700 chrUn 77.928 811 144 19 1 789 436077669 436078466 1.020000e-129 473
14 TraesCS6B01G038700 chrUn 77.047 806 160 13 1 789 80136576 80137373 1.040000e-119 440
15 TraesCS6B01G038700 chrUn 93.651 189 10 2 1 188 309558967 309558780 6.640000e-72 281
16 TraesCS6B01G038700 chrUn 93.651 189 10 2 1 188 309575039 309574852 6.640000e-72 281
17 TraesCS6B01G038700 chrUn 77.740 292 54 8 378 662 223959058 223958771 5.400000e-38 169
18 TraesCS6B01G038700 chr5D 74.416 1583 343 45 1 1546 439792467 439790910 9.580000e-175 623
19 TraesCS6B01G038700 chr5D 89.256 121 13 0 2820 2940 373206276 373206156 5.430000e-33 152
20 TraesCS6B01G038700 chr5B 74.359 1599 344 44 1 1554 534916922 534915345 3.450000e-174 621
21 TraesCS6B01G038700 chr5B 76.583 679 134 13 1 662 534861518 534860848 1.800000e-92 350
22 TraesCS6B01G038700 chr5B 89.256 121 13 0 2820 2940 443271513 443271393 5.430000e-33 152
23 TraesCS6B01G038700 chr7A 73.956 1125 249 32 531 1624 654345 653234 6.280000e-112 414
24 TraesCS6B01G038700 chr4A 74.261 1049 234 30 531 1554 743446663 743445626 2.920000e-110 409
25 TraesCS6B01G038700 chr1B 73.573 473 102 18 2 461 582710155 582710617 3.250000e-35 159
26 TraesCS6B01G038700 chr1B 73.305 472 105 16 2 461 582689677 582690139 1.510000e-33 154
27 TraesCS6B01G038700 chr3D 92.593 108 5 3 2831 2938 598889718 598889614 5.430000e-33 152
28 TraesCS6B01G038700 chr1D 89.908 109 11 0 2831 2939 392140978 392141086 1.180000e-29 141
29 TraesCS6B01G038700 chr1D 92.105 76 3 3 3074 3146 211688638 211688713 1.540000e-18 104
30 TraesCS6B01G038700 chr2A 87.931 116 13 1 2831 2945 24058852 24058737 5.470000e-28 135
31 TraesCS6B01G038700 chr2D 88.073 109 13 0 2831 2939 548080229 548080337 2.550000e-26 130
32 TraesCS6B01G038700 chr7B 87.963 108 13 0 2831 2938 106336677 106336784 9.160000e-26 128
33 TraesCS6B01G038700 chr7B 86.726 113 13 2 2828 2939 720468100 720467989 1.180000e-24 124
34 TraesCS6B01G038700 chr5A 87.963 108 13 0 2831 2938 7183676 7183783 9.160000e-26 128


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G038700 chr6B 23036576 23039721 3145 False 5810.0 5810 100.0000 1 3146 1 chr6B.!!$F3 3145
1 TraesCS6B01G038700 chr6B 22988685 22994663 5978 False 1144.0 2130 86.2750 1 3070 2 chr6B.!!$F4 3069
2 TraesCS6B01G038700 chr6B 23002498 23003536 1038 False 952.0 952 83.3330 716 1756 1 chr6B.!!$F2 1040
3 TraesCS6B01G038700 chr6B 5736697 5737578 881 False 555.0 555 78.2510 2 883 1 chr6B.!!$F1 881
4 TraesCS6B01G038700 chr6D 12338439 12340753 2314 True 1127.0 1633 85.9965 1 2275 2 chr6D.!!$R2 2274
5 TraesCS6B01G038700 chr6A 13875257 13876664 1407 False 783.5 946 87.6990 1 1369 2 chr6A.!!$F1 1368
6 TraesCS6B01G038700 chrUn 80088710 80090277 1567 False 627.0 627 74.4490 1 1547 1 chrUn.!!$F1 1546
7 TraesCS6B01G038700 chrUn 376485072 376486453 1381 False 520.0 520 74.0160 190 1547 1 chrUn.!!$F3 1357
8 TraesCS6B01G038700 chrUn 436077669 436078466 797 False 473.0 473 77.9280 1 789 1 chrUn.!!$F4 788
9 TraesCS6B01G038700 chrUn 80136576 80137373 797 False 440.0 440 77.0470 1 789 1 chrUn.!!$F2 788
10 TraesCS6B01G038700 chr5D 439790910 439792467 1557 True 623.0 623 74.4160 1 1546 1 chr5D.!!$R2 1545
11 TraesCS6B01G038700 chr5B 534915345 534916922 1577 True 621.0 621 74.3590 1 1554 1 chr5B.!!$R3 1553
12 TraesCS6B01G038700 chr5B 534860848 534861518 670 True 350.0 350 76.5830 1 662 1 chr5B.!!$R2 661
13 TraesCS6B01G038700 chr7A 653234 654345 1111 True 414.0 414 73.9560 531 1624 1 chr7A.!!$R1 1093
14 TraesCS6B01G038700 chr4A 743445626 743446663 1037 True 409.0 409 74.2610 531 1554 1 chr4A.!!$R1 1023

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
72 73 1.012841 GCACTGGCATGAAGAGCTAC 58.987 55.0 0.00 0.0 40.72 3.58 F
1372 1451 1.119684 AAGTTTTGTGGCCTTCACCC 58.880 50.0 3.32 0.0 45.48 4.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1491 1577 0.329261 TCCAGACTTGCAGGGGAATG 59.671 55.0 0.0 0.0 0.00 2.67 R
2672 5905 0.032912 AGCCATCATGGATGTTGCCA 60.033 50.0 8.3 0.0 40.96 4.92 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 9.391006 GTATGATTTTGGTCACCACTAGATTTA 57.609 33.333 0.00 0.00 30.78 1.40
72 73 1.012841 GCACTGGCATGAAGAGCTAC 58.987 55.000 0.00 0.00 40.72 3.58
95 96 4.652822 GAGTTGGAGGGTTTACAAGATGT 58.347 43.478 0.00 0.00 0.00 3.06
216 220 1.228552 GGGTTCTCCTTTGGCTGCA 60.229 57.895 0.50 0.00 0.00 4.41
254 258 4.015872 TGTTGCAAAGGGACCTAAGTAG 57.984 45.455 0.00 0.00 0.00 2.57
256 260 4.254492 GTTGCAAAGGGACCTAAGTAGAG 58.746 47.826 0.00 0.00 0.00 2.43
276 280 9.326489 AGTAGAGCACATTGGGAATCTATATTA 57.674 33.333 5.04 0.00 0.00 0.98
444 460 2.355756 CGACATTTGGATAGCACAAGGG 59.644 50.000 0.00 0.00 0.00 3.95
445 461 2.099756 GACATTTGGATAGCACAAGGGC 59.900 50.000 0.00 0.00 0.00 5.19
455 477 3.040965 CACAAGGGCATGTGGAACT 57.959 52.632 13.14 0.00 45.47 3.01
471 493 5.945191 TGTGGAACTTCAAGATGCATCATTA 59.055 36.000 27.81 5.53 38.04 1.90
472 494 6.094464 TGTGGAACTTCAAGATGCATCATTAG 59.906 38.462 27.81 19.40 38.04 1.73
473 495 5.066893 TGGAACTTCAAGATGCATCATTAGC 59.933 40.000 27.81 9.33 0.00 3.09
480 502 6.558009 TCAAGATGCATCATTAGCTTTTGAC 58.442 36.000 27.81 0.00 0.00 3.18
511 533 7.461749 TGTAAAAGGGTCATTCTTTCAGAGAT 58.538 34.615 0.00 0.00 33.80 2.75
516 538 3.876320 GGTCATTCTTTCAGAGATCAGCC 59.124 47.826 0.00 0.00 33.49 4.85
517 539 4.511527 GTCATTCTTTCAGAGATCAGCCA 58.488 43.478 0.00 0.00 33.49 4.75
521 543 4.199432 TCTTTCAGAGATCAGCCAAGTC 57.801 45.455 0.00 0.00 0.00 3.01
526 548 4.914983 TCAGAGATCAGCCAAGTCAAATT 58.085 39.130 0.00 0.00 0.00 1.82
527 549 5.319453 TCAGAGATCAGCCAAGTCAAATTT 58.681 37.500 0.00 0.00 0.00 1.82
528 550 5.771666 TCAGAGATCAGCCAAGTCAAATTTT 59.228 36.000 0.00 0.00 0.00 1.82
529 551 6.072286 TCAGAGATCAGCCAAGTCAAATTTTC 60.072 38.462 0.00 0.00 0.00 2.29
555 610 7.854422 CAGTATGTAATTCATGACTTGATGCAC 59.146 37.037 8.47 0.00 37.91 4.57
588 643 4.543590 ACTTGTCTCGAAGGATGAATGT 57.456 40.909 0.00 0.00 0.00 2.71
632 687 8.286191 AGTGATCTTGATAAAATCCCTTCAAC 57.714 34.615 0.00 0.00 0.00 3.18
742 797 4.520111 TGGTATGCAATGAATCATACAGCC 59.480 41.667 12.56 11.47 44.04 4.85
744 799 1.334556 TGCAATGAATCATACAGCCGC 59.665 47.619 11.04 3.06 0.00 6.53
831 886 7.376615 TGAGTTTTAGGTTGTCTAGAGTAAGC 58.623 38.462 9.67 9.67 0.00 3.09
852 907 2.700897 CCAGTTACCTGAGAGTATGGGG 59.299 54.545 0.00 0.00 41.50 4.96
893 948 2.624838 ACCTTCGTTTACTCGGAAGTCA 59.375 45.455 0.00 0.00 36.92 3.41
931 989 5.614324 TCCTTCATCGGTTTGTCATCTAT 57.386 39.130 0.00 0.00 0.00 1.98
969 1027 5.932303 TGTAGAAGCTAAGGATTGTGTGTTC 59.068 40.000 0.00 0.00 0.00 3.18
1002 1060 3.340928 TGAAGACTTCAGTGATGCCATG 58.659 45.455 13.99 0.00 34.08 3.66
1095 1165 1.858091 CTGGTGATCAGGCGATACAC 58.142 55.000 0.00 0.00 39.76 2.90
1120 1190 2.783135 TGGAGAACCAGATTGAAGCAC 58.217 47.619 0.00 0.00 41.77 4.40
1137 1207 1.208052 GCACTGCCTCACTGGAATCTA 59.792 52.381 0.00 0.00 38.35 1.98
1138 1208 2.355108 GCACTGCCTCACTGGAATCTAA 60.355 50.000 0.00 0.00 38.35 2.10
1218 1288 2.040412 CCTCCTGCCAAGGTTAAGTTCT 59.960 50.000 0.00 0.00 44.82 3.01
1227 1297 5.335976 GCCAAGGTTAAGTTCTCTGGAATTG 60.336 44.000 0.00 0.00 33.71 2.32
1228 1298 6.003950 CCAAGGTTAAGTTCTCTGGAATTGA 58.996 40.000 0.00 0.00 33.71 2.57
1229 1299 6.150140 CCAAGGTTAAGTTCTCTGGAATTGAG 59.850 42.308 0.00 0.00 33.71 3.02
1233 1303 8.606830 AGGTTAAGTTCTCTGGAATTGAGTTAT 58.393 33.333 0.00 0.00 33.71 1.89
1282 1352 3.351794 TTGGGCCGTACATTTGTGATA 57.648 42.857 0.00 0.00 0.00 2.15
1304 1383 7.172480 GATACAGATCAGGAAGACAACCTTCG 61.172 46.154 0.00 0.00 40.73 3.79
1328 1407 5.755813 CTGTCTTGAAGTTTTGGACATCAG 58.244 41.667 0.00 0.00 37.30 2.90
1369 1448 1.134551 GGCAAAGTTTTGTGGCCTTCA 60.135 47.619 3.32 0.00 41.39 3.02
1372 1451 1.119684 AAGTTTTGTGGCCTTCACCC 58.880 50.000 3.32 0.00 45.48 4.61
1459 1540 1.587054 GACCTCACTGTCCTCACCG 59.413 63.158 0.00 0.00 0.00 4.94
1463 1544 1.404717 CCTCACTGTCCTCACCGAATG 60.405 57.143 0.00 0.00 0.00 2.67
1470 1551 3.081061 TGTCCTCACCGAATGGAAAATG 58.919 45.455 0.00 0.00 39.21 2.32
1471 1552 3.081804 GTCCTCACCGAATGGAAAATGT 58.918 45.455 0.00 0.00 39.21 2.71
1472 1553 3.127030 GTCCTCACCGAATGGAAAATGTC 59.873 47.826 0.00 0.00 39.21 3.06
1475 1559 2.739913 TCACCGAATGGAAAATGTCGAC 59.260 45.455 9.11 9.11 39.21 4.20
1547 1633 5.882557 CAGCCCTTGAGAAACTGTATATTGT 59.117 40.000 0.00 0.00 0.00 2.71
1566 1652 5.885230 TTGTTGATTGTGCCTCTCTTATG 57.115 39.130 0.00 0.00 0.00 1.90
1579 1665 3.515502 CTCTCTTATGTCAGTTGGGGTCA 59.484 47.826 0.00 0.00 0.00 4.02
1599 1685 4.099170 GACGCAAGCAGCAGCAGG 62.099 66.667 3.17 0.00 46.13 4.85
1624 1713 3.523157 TGTTGGAGCATTCTCATCCCTTA 59.477 43.478 0.00 0.00 41.13 2.69
1649 1738 5.410924 TGTTCTATATATTAGCGGCTGCAG 58.589 41.667 21.93 10.11 46.23 4.41
1677 1766 5.178096 TGTTGAGCCTTGATGAATTCCTA 57.822 39.130 2.27 0.00 0.00 2.94
1697 1786 2.990066 ACACCTGCTTATCTACCTGC 57.010 50.000 0.00 0.00 0.00 4.85
1700 1789 1.139853 ACCTGCTTATCTACCTGCTGC 59.860 52.381 0.00 0.00 0.00 5.25
1701 1790 1.139654 CCTGCTTATCTACCTGCTGCA 59.860 52.381 0.88 0.88 0.00 4.41
1722 1811 4.317488 CAAAGGAAATTTGGGTGACATGG 58.683 43.478 0.00 0.00 43.88 3.66
1756 1845 1.204146 GTCCCTGCCAGTTGATAGGA 58.796 55.000 0.00 0.00 31.91 2.94
1761 1850 2.486191 CCTGCCAGTTGATAGGATCCAC 60.486 54.545 15.82 2.39 31.91 4.02
1762 1851 1.490490 TGCCAGTTGATAGGATCCACC 59.510 52.381 15.82 2.70 39.35 4.61
1763 1852 1.490490 GCCAGTTGATAGGATCCACCA 59.510 52.381 15.82 5.56 42.04 4.17
1772 1861 7.775561 AGTTGATAGGATCCACCATTTTACTTC 59.224 37.037 15.82 0.00 42.04 3.01
1781 1870 5.241506 TCCACCATTTTACTTCTTTGCAGAG 59.758 40.000 0.00 0.00 0.00 3.35
1785 1874 5.397326 CATTTTACTTCTTTGCAGAGGCTC 58.603 41.667 6.34 6.34 41.91 4.70
1786 1875 2.370281 TACTTCTTTGCAGAGGCTCG 57.630 50.000 9.22 5.44 41.91 5.03
1793 1882 1.086696 TTGCAGAGGCTCGTTATTGC 58.913 50.000 16.26 16.26 41.91 3.56
1795 1884 1.086696 GCAGAGGCTCGTTATTGCAA 58.913 50.000 17.71 0.00 36.96 4.08
1817 1906 7.439655 TGCAAATTGTCCAAAGTTAAATACACC 59.560 33.333 0.00 0.00 0.00 4.16
1829 1918 8.937634 AAGTTAAATACACCGATGGTACTAAG 57.062 34.615 0.00 0.00 32.11 2.18
1849 1938 4.984146 AGATTACCATCCTCCCTTAAGC 57.016 45.455 0.00 0.00 0.00 3.09
1855 1944 3.269381 ACCATCCTCCCTTAAGCATTTCA 59.731 43.478 0.00 0.00 0.00 2.69
1965 2054 1.026718 CAACCCTCAGATCCGTTGGC 61.027 60.000 0.00 0.00 33.54 4.52
1995 2084 3.311486 GCAGTTGCTCAAGTAGAGTCT 57.689 47.619 0.00 0.00 46.47 3.24
2008 2097 9.944663 CTCAAGTAGAGTCTGTGTATATTCTTC 57.055 37.037 1.86 0.00 39.62 2.87
2048 2137 2.235891 TGTAAGACAGCCTCTTCGACA 58.764 47.619 0.00 0.00 40.04 4.35
2152 2245 6.314896 GTGGCCAGCTATATGTTGATATCTTC 59.685 42.308 5.11 0.00 0.00 2.87
2155 2248 6.035435 GCCAGCTATATGTTGATATCTTCACG 59.965 42.308 3.98 0.00 32.84 4.35
2248 3493 8.610248 AAACTCTAGAGTCTTTCTTTTTAGCC 57.390 34.615 25.34 0.00 41.58 3.93
2249 3494 7.304497 ACTCTAGAGTCTTTCTTTTTAGCCA 57.696 36.000 20.00 0.00 36.92 4.75
2254 3499 6.176896 AGAGTCTTTCTTTTTAGCCAGATCC 58.823 40.000 0.00 0.00 29.61 3.36
2257 3502 5.473504 GTCTTTCTTTTTAGCCAGATCCACA 59.526 40.000 0.00 0.00 0.00 4.17
2276 4025 5.108385 CACACATTGGAAAGTGTTCTACC 57.892 43.478 0.00 0.00 46.04 3.18
2277 4026 3.813166 ACACATTGGAAAGTGTTCTACCG 59.187 43.478 0.00 0.00 46.04 4.02
2282 4031 2.158871 TGGAAAGTGTTCTACCGTTGCT 60.159 45.455 0.00 0.00 33.92 3.91
2283 4032 2.223377 GGAAAGTGTTCTACCGTTGCTG 59.777 50.000 0.00 0.00 33.92 4.41
2287 4036 2.038557 AGTGTTCTACCGTTGCTGGATT 59.961 45.455 0.00 0.00 0.00 3.01
2301 4050 7.330700 CCGTTGCTGGATTTATGTTAAACATTT 59.669 33.333 0.00 0.00 39.88 2.32
2302 4051 8.372521 CGTTGCTGGATTTATGTTAAACATTTC 58.627 33.333 0.00 0.00 39.88 2.17
2303 4052 9.202273 GTTGCTGGATTTATGTTAAACATTTCA 57.798 29.630 0.00 0.00 39.88 2.69
2305 4054 9.368674 TGCTGGATTTATGTTAAACATTTCATG 57.631 29.630 0.00 0.00 39.88 3.07
2316 4076 3.455990 ACATTTCATGTTGCAACAGCA 57.544 38.095 33.44 21.16 41.63 4.41
2326 4086 0.961019 TGCAACAGCAATCAAGACCC 59.039 50.000 0.00 0.00 34.85 4.46
2327 4087 0.961019 GCAACAGCAATCAAGACCCA 59.039 50.000 0.00 0.00 0.00 4.51
2332 4092 2.624838 ACAGCAATCAAGACCCAAGTTG 59.375 45.455 0.00 0.00 0.00 3.16
2333 4093 1.615392 AGCAATCAAGACCCAAGTTGC 59.385 47.619 0.00 0.00 41.50 4.17
2334 4094 1.615392 GCAATCAAGACCCAAGTTGCT 59.385 47.619 0.00 0.00 38.97 3.91
2335 4095 2.036346 GCAATCAAGACCCAAGTTGCTT 59.964 45.455 0.00 0.00 38.97 3.91
2336 4096 3.493176 GCAATCAAGACCCAAGTTGCTTT 60.493 43.478 0.00 0.00 38.97 3.51
2337 4097 4.053295 CAATCAAGACCCAAGTTGCTTTG 58.947 43.478 0.00 0.00 0.00 2.77
2338 4098 1.408702 TCAAGACCCAAGTTGCTTTGC 59.591 47.619 0.00 0.00 0.00 3.68
2340 4100 0.396974 AGACCCAAGTTGCTTTGCCA 60.397 50.000 0.00 0.00 0.00 4.92
2341 4101 0.463620 GACCCAAGTTGCTTTGCCAA 59.536 50.000 0.00 0.00 0.00 4.52
2342 4102 1.070601 GACCCAAGTTGCTTTGCCAAT 59.929 47.619 0.00 0.00 0.00 3.16
2343 4103 1.490069 ACCCAAGTTGCTTTGCCAATT 59.510 42.857 0.00 0.00 0.00 2.32
2344 4104 2.092484 ACCCAAGTTGCTTTGCCAATTT 60.092 40.909 0.00 0.00 0.00 1.82
2346 4106 3.380954 CCCAAGTTGCTTTGCCAATTTTT 59.619 39.130 0.00 0.00 0.00 1.94
2347 4107 4.352887 CCAAGTTGCTTTGCCAATTTTTG 58.647 39.130 0.00 0.00 0.00 2.44
2376 4136 3.446442 CCAAGCAGGCCCTCATATAAT 57.554 47.619 0.00 0.00 0.00 1.28
2378 4138 3.350833 CAAGCAGGCCCTCATATAATCC 58.649 50.000 0.00 0.00 0.00 3.01
2379 4139 2.636005 AGCAGGCCCTCATATAATCCA 58.364 47.619 0.00 0.00 0.00 3.41
2380 4140 2.988859 AGCAGGCCCTCATATAATCCAA 59.011 45.455 0.00 0.00 0.00 3.53
2382 4142 4.790246 AGCAGGCCCTCATATAATCCAATA 59.210 41.667 0.00 0.00 0.00 1.90
2383 4143 5.434376 AGCAGGCCCTCATATAATCCAATAT 59.566 40.000 0.00 0.00 0.00 1.28
2384 4144 5.533903 GCAGGCCCTCATATAATCCAATATG 59.466 44.000 0.00 0.00 39.97 1.78
2385 4145 6.635645 GCAGGCCCTCATATAATCCAATATGA 60.636 42.308 0.00 6.43 43.37 2.15
2386 4146 7.524290 CAGGCCCTCATATAATCCAATATGAT 58.476 38.462 0.00 0.00 44.11 2.45
2388 4148 9.241336 AGGCCCTCATATAATCCAATATGATTA 57.759 33.333 0.00 0.00 44.11 1.75
2389 4149 9.512588 GGCCCTCATATAATCCAATATGATTAG 57.487 37.037 6.93 2.12 44.11 1.73
2408 4168 9.853177 ATGATTAGGGAGTTTTCTATTGTTAGG 57.147 33.333 0.00 0.00 0.00 2.69
2410 4170 9.549078 GATTAGGGAGTTTTCTATTGTTAGGAG 57.451 37.037 0.00 0.00 0.00 3.69
2411 4171 8.674925 TTAGGGAGTTTTCTATTGTTAGGAGA 57.325 34.615 0.00 0.00 0.00 3.71
2413 4173 8.855804 AGGGAGTTTTCTATTGTTAGGAGATA 57.144 34.615 0.00 0.00 0.00 1.98
2475 4235 6.689178 GCTCAAATAGCGAATGAACAAAAA 57.311 33.333 0.00 0.00 42.53 1.94
2476 4236 7.281991 GCTCAAATAGCGAATGAACAAAAAT 57.718 32.000 0.00 0.00 42.53 1.82
2477 4237 7.168796 GCTCAAATAGCGAATGAACAAAAATG 58.831 34.615 0.00 0.00 42.53 2.32
2478 4238 7.579589 TCAAATAGCGAATGAACAAAAATGG 57.420 32.000 0.00 0.00 0.00 3.16
2479 4239 7.374272 TCAAATAGCGAATGAACAAAAATGGA 58.626 30.769 0.00 0.00 0.00 3.41
2481 4241 8.494347 CAAATAGCGAATGAACAAAAATGGAAA 58.506 29.630 0.00 0.00 0.00 3.13
2482 4242 8.600449 AATAGCGAATGAACAAAAATGGAAAA 57.400 26.923 0.00 0.00 0.00 2.29
2483 4243 8.776376 ATAGCGAATGAACAAAAATGGAAAAT 57.224 26.923 0.00 0.00 0.00 1.82
2484 4244 6.890558 AGCGAATGAACAAAAATGGAAAATG 58.109 32.000 0.00 0.00 0.00 2.32
2485 4245 6.705381 AGCGAATGAACAAAAATGGAAAATGA 59.295 30.769 0.00 0.00 0.00 2.57
2512 5745 4.729868 ACTTAACCATATCCATGAAGGGC 58.270 43.478 0.00 0.00 38.24 5.19
2513 5746 2.683211 AACCATATCCATGAAGGGCC 57.317 50.000 0.00 0.00 38.24 5.80
2515 5748 0.779358 CCATATCCATGAAGGGCCCA 59.221 55.000 27.56 2.74 38.24 5.36
2516 5749 1.272313 CCATATCCATGAAGGGCCCAG 60.272 57.143 27.56 7.93 38.24 4.45
2517 5750 1.706866 CATATCCATGAAGGGCCCAGA 59.293 52.381 27.56 10.83 38.24 3.86
2519 5752 1.238615 ATCCATGAAGGGCCCAGATT 58.761 50.000 27.56 10.08 38.24 2.40
2520 5753 1.009997 TCCATGAAGGGCCCAGATTT 58.990 50.000 27.56 9.62 38.24 2.17
2552 5785 9.236691 ACAAGCAAGCAATATGTTAATTAATCG 57.763 29.630 0.31 0.00 0.00 3.34
2553 5786 9.449550 CAAGCAAGCAATATGTTAATTAATCGA 57.550 29.630 0.31 0.00 0.00 3.59
2569 5802 7.897575 ATTAATCGATAGCTCATCAAGAACC 57.102 36.000 0.00 0.00 32.71 3.62
2570 5803 4.944619 ATCGATAGCTCATCAAGAACCA 57.055 40.909 0.00 0.00 32.71 3.67
2571 5804 4.944619 TCGATAGCTCATCAAGAACCAT 57.055 40.909 0.00 0.00 32.71 3.55
2572 5805 5.282055 TCGATAGCTCATCAAGAACCATT 57.718 39.130 0.00 0.00 32.71 3.16
2573 5806 6.405278 TCGATAGCTCATCAAGAACCATTA 57.595 37.500 0.00 0.00 32.71 1.90
2574 5807 6.450545 TCGATAGCTCATCAAGAACCATTAG 58.549 40.000 0.00 0.00 32.71 1.73
2575 5808 5.119898 CGATAGCTCATCAAGAACCATTAGC 59.880 44.000 0.00 0.00 32.71 3.09
2576 5809 3.549794 AGCTCATCAAGAACCATTAGCC 58.450 45.455 0.00 0.00 0.00 3.93
2577 5810 3.201708 AGCTCATCAAGAACCATTAGCCT 59.798 43.478 0.00 0.00 0.00 4.58
2578 5811 3.950395 GCTCATCAAGAACCATTAGCCTT 59.050 43.478 0.00 0.00 0.00 4.35
2579 5812 4.400567 GCTCATCAAGAACCATTAGCCTTT 59.599 41.667 0.00 0.00 0.00 3.11
2580 5813 5.449725 GCTCATCAAGAACCATTAGCCTTTC 60.450 44.000 0.00 0.00 0.00 2.62
2581 5814 4.635765 TCATCAAGAACCATTAGCCTTTCG 59.364 41.667 0.00 0.00 0.00 3.46
2582 5815 4.015872 TCAAGAACCATTAGCCTTTCGT 57.984 40.909 0.00 0.00 0.00 3.85
2583 5816 3.751175 TCAAGAACCATTAGCCTTTCGTG 59.249 43.478 0.00 0.00 0.00 4.35
2584 5817 2.084546 AGAACCATTAGCCTTTCGTGC 58.915 47.619 0.00 0.00 0.00 5.34
2585 5818 1.810151 GAACCATTAGCCTTTCGTGCA 59.190 47.619 0.00 0.00 0.00 4.57
2586 5819 1.904287 ACCATTAGCCTTTCGTGCAA 58.096 45.000 0.00 0.00 0.00 4.08
2587 5820 2.235016 ACCATTAGCCTTTCGTGCAAA 58.765 42.857 0.00 0.00 0.00 3.68
2588 5821 2.030274 ACCATTAGCCTTTCGTGCAAAC 60.030 45.455 0.00 0.00 0.00 2.93
2589 5822 2.228822 CCATTAGCCTTTCGTGCAAACT 59.771 45.455 0.00 0.00 0.00 2.66
2590 5823 3.438781 CCATTAGCCTTTCGTGCAAACTA 59.561 43.478 0.00 0.00 0.00 2.24
2591 5824 4.096382 CCATTAGCCTTTCGTGCAAACTAT 59.904 41.667 0.00 0.00 0.00 2.12
2592 5825 4.939509 TTAGCCTTTCGTGCAAACTATC 57.060 40.909 0.00 0.00 0.00 2.08
2593 5826 2.778299 AGCCTTTCGTGCAAACTATCA 58.222 42.857 0.00 0.00 0.00 2.15
2594 5827 3.146066 AGCCTTTCGTGCAAACTATCAA 58.854 40.909 0.00 0.00 0.00 2.57
2595 5828 3.189287 AGCCTTTCGTGCAAACTATCAAG 59.811 43.478 0.00 0.00 0.00 3.02
2596 5829 3.188460 GCCTTTCGTGCAAACTATCAAGA 59.812 43.478 0.00 0.00 0.00 3.02
2597 5830 4.320202 GCCTTTCGTGCAAACTATCAAGAA 60.320 41.667 0.00 0.00 0.00 2.52
2598 5831 5.757886 CCTTTCGTGCAAACTATCAAGAAA 58.242 37.500 0.00 0.00 37.98 2.52
2599 5832 6.381801 CCTTTCGTGCAAACTATCAAGAAAT 58.618 36.000 0.00 0.00 38.96 2.17
2600 5833 6.863126 CCTTTCGTGCAAACTATCAAGAAATT 59.137 34.615 0.00 0.00 38.96 1.82
2601 5834 7.382218 CCTTTCGTGCAAACTATCAAGAAATTT 59.618 33.333 0.00 0.00 38.96 1.82
2602 5835 7.621832 TTCGTGCAAACTATCAAGAAATTTG 57.378 32.000 0.00 0.00 34.17 2.32
2641 5874 8.803397 AGTATTAGATTAACCACCAAAGAACC 57.197 34.615 0.00 0.00 0.00 3.62
2642 5875 8.387813 AGTATTAGATTAACCACCAAAGAACCA 58.612 33.333 0.00 0.00 0.00 3.67
2643 5876 9.185680 GTATTAGATTAACCACCAAAGAACCAT 57.814 33.333 0.00 0.00 0.00 3.55
2644 5877 7.696992 TTAGATTAACCACCAAAGAACCATC 57.303 36.000 0.00 0.00 0.00 3.51
2645 5878 5.640147 AGATTAACCACCAAAGAACCATCA 58.360 37.500 0.00 0.00 0.00 3.07
2646 5879 5.476945 AGATTAACCACCAAAGAACCATCAC 59.523 40.000 0.00 0.00 0.00 3.06
2647 5880 3.312736 AACCACCAAAGAACCATCACT 57.687 42.857 0.00 0.00 0.00 3.41
2648 5881 2.586425 ACCACCAAAGAACCATCACTG 58.414 47.619 0.00 0.00 0.00 3.66
2649 5882 2.091885 ACCACCAAAGAACCATCACTGT 60.092 45.455 0.00 0.00 0.00 3.55
2650 5883 3.137544 ACCACCAAAGAACCATCACTGTA 59.862 43.478 0.00 0.00 0.00 2.74
2651 5884 4.202567 ACCACCAAAGAACCATCACTGTAT 60.203 41.667 0.00 0.00 0.00 2.29
2652 5885 4.156556 CCACCAAAGAACCATCACTGTATG 59.843 45.833 0.00 0.00 0.00 2.39
2653 5886 5.003160 CACCAAAGAACCATCACTGTATGA 58.997 41.667 0.00 0.00 43.13 2.15
2654 5887 5.473162 CACCAAAGAACCATCACTGTATGAA 59.527 40.000 0.00 0.00 41.93 2.57
2655 5888 6.016360 CACCAAAGAACCATCACTGTATGAAA 60.016 38.462 0.00 0.00 41.93 2.69
2656 5889 6.721208 ACCAAAGAACCATCACTGTATGAAAT 59.279 34.615 0.00 0.00 41.93 2.17
2657 5890 7.031372 CCAAAGAACCATCACTGTATGAAATG 58.969 38.462 0.00 0.00 41.93 2.32
2658 5891 6.764308 AAGAACCATCACTGTATGAAATGG 57.236 37.500 0.00 0.00 41.93 3.16
2659 5892 6.065976 AGAACCATCACTGTATGAAATGGA 57.934 37.500 6.69 0.00 39.12 3.41
2660 5893 6.484288 AGAACCATCACTGTATGAAATGGAA 58.516 36.000 6.69 0.00 39.12 3.53
2661 5894 6.947733 AGAACCATCACTGTATGAAATGGAAA 59.052 34.615 6.69 0.00 39.12 3.13
2662 5895 7.451255 AGAACCATCACTGTATGAAATGGAAAA 59.549 33.333 6.69 0.00 39.12 2.29
2663 5896 7.537596 ACCATCACTGTATGAAATGGAAAAA 57.462 32.000 6.69 0.00 39.12 1.94
2692 5925 3.959478 GCAACATCCATGATGGCTG 57.041 52.632 13.38 13.38 43.60 4.85
2693 5926 0.249322 GCAACATCCATGATGGCTGC 60.249 55.000 14.76 12.28 43.60 5.25
2694 5927 0.387929 CAACATCCATGATGGCTGCC 59.612 55.000 14.76 12.87 43.60 4.85
2695 5928 0.260816 AACATCCATGATGGCTGCCT 59.739 50.000 21.03 5.22 43.60 4.75
2696 5929 0.178998 ACATCCATGATGGCTGCCTC 60.179 55.000 21.03 14.70 43.60 4.70
2697 5930 0.894184 CATCCATGATGGCTGCCTCC 60.894 60.000 21.03 11.76 37.47 4.30
2698 5931 1.066585 ATCCATGATGGCTGCCTCCT 61.067 55.000 21.03 4.37 37.47 3.69
2699 5932 1.228184 CCATGATGGCTGCCTCCTC 60.228 63.158 21.03 13.89 0.00 3.71
2700 5933 1.530283 CATGATGGCTGCCTCCTCA 59.470 57.895 21.03 18.75 0.00 3.86
2701 5934 0.535328 CATGATGGCTGCCTCCTCAG 60.535 60.000 21.03 9.84 37.15 3.35
2702 5935 0.987081 ATGATGGCTGCCTCCTCAGT 60.987 55.000 21.03 7.62 36.49 3.41
2703 5936 0.325577 TGATGGCTGCCTCCTCAGTA 60.326 55.000 21.03 0.00 36.49 2.74
2704 5937 0.833287 GATGGCTGCCTCCTCAGTAA 59.167 55.000 21.03 0.00 36.49 2.24
2705 5938 0.543749 ATGGCTGCCTCCTCAGTAAC 59.456 55.000 21.03 0.00 36.49 2.50
2706 5939 1.153549 GGCTGCCTCCTCAGTAACG 60.154 63.158 12.43 0.00 36.49 3.18
2707 5940 1.153549 GCTGCCTCCTCAGTAACGG 60.154 63.158 0.00 0.00 36.49 4.44
2708 5941 1.889530 GCTGCCTCCTCAGTAACGGT 61.890 60.000 0.00 0.00 36.49 4.83
2709 5942 0.108615 CTGCCTCCTCAGTAACGGTG 60.109 60.000 0.00 0.00 0.00 4.94
2710 5943 0.541063 TGCCTCCTCAGTAACGGTGA 60.541 55.000 0.00 0.00 0.00 4.02
2711 5944 0.824759 GCCTCCTCAGTAACGGTGAT 59.175 55.000 0.00 0.00 0.00 3.06
2712 5945 1.202428 GCCTCCTCAGTAACGGTGATC 60.202 57.143 0.00 0.00 0.00 2.92
2713 5946 2.100197 CCTCCTCAGTAACGGTGATCA 58.900 52.381 0.00 0.00 0.00 2.92
2714 5947 2.695666 CCTCCTCAGTAACGGTGATCAT 59.304 50.000 0.00 0.00 0.00 2.45
2715 5948 3.243569 CCTCCTCAGTAACGGTGATCATC 60.244 52.174 0.00 0.00 0.00 2.92
2716 5949 2.693591 TCCTCAGTAACGGTGATCATCC 59.306 50.000 0.00 1.25 0.00 3.51
2717 5950 2.224066 CCTCAGTAACGGTGATCATCCC 60.224 54.545 0.00 0.00 0.00 3.85
2718 5951 1.760613 TCAGTAACGGTGATCATCCCC 59.239 52.381 0.00 0.00 0.00 4.81
2719 5952 1.484653 CAGTAACGGTGATCATCCCCA 59.515 52.381 0.00 0.00 0.00 4.96
2720 5953 1.485066 AGTAACGGTGATCATCCCCAC 59.515 52.381 0.00 0.00 0.00 4.61
2721 5954 0.462375 TAACGGTGATCATCCCCACG 59.538 55.000 0.00 0.22 34.30 4.94
2722 5955 1.550130 AACGGTGATCATCCCCACGT 61.550 55.000 0.00 0.86 34.30 4.49
2723 5956 1.220749 CGGTGATCATCCCCACGTT 59.779 57.895 0.00 0.00 34.30 3.99
2724 5957 0.462375 CGGTGATCATCCCCACGTTA 59.538 55.000 0.00 0.00 34.30 3.18
2725 5958 1.805120 CGGTGATCATCCCCACGTTAC 60.805 57.143 0.00 0.00 34.30 2.50
2726 5959 1.485066 GGTGATCATCCCCACGTTACT 59.515 52.381 0.00 0.00 34.30 2.24
2727 5960 2.550978 GTGATCATCCCCACGTTACTG 58.449 52.381 0.00 0.00 0.00 2.74
2728 5961 1.134521 TGATCATCCCCACGTTACTGC 60.135 52.381 0.00 0.00 0.00 4.40
2729 5962 1.139058 GATCATCCCCACGTTACTGCT 59.861 52.381 0.00 0.00 0.00 4.24
2730 5963 0.535335 TCATCCCCACGTTACTGCTC 59.465 55.000 0.00 0.00 0.00 4.26
2731 5964 0.249120 CATCCCCACGTTACTGCTCA 59.751 55.000 0.00 0.00 0.00 4.26
2732 5965 1.134401 CATCCCCACGTTACTGCTCAT 60.134 52.381 0.00 0.00 0.00 2.90
2733 5966 0.535335 TCCCCACGTTACTGCTCATC 59.465 55.000 0.00 0.00 0.00 2.92
2734 5967 0.806102 CCCCACGTTACTGCTCATCG 60.806 60.000 0.00 0.00 0.00 3.84
2735 5968 0.806102 CCCACGTTACTGCTCATCGG 60.806 60.000 0.00 0.00 0.00 4.18
2741 5974 2.464865 GTTACTGCTCATCGGCTGTAG 58.535 52.381 0.00 0.00 43.60 2.74
2743 5976 0.898320 ACTGCTCATCGGCTGTAGTT 59.102 50.000 0.00 0.00 41.34 2.24
2751 5984 2.436115 GGCTGTAGTTGGTCGGCC 60.436 66.667 0.00 0.00 46.60 6.13
2780 6013 2.880268 CTGGTGAGTCTGCATCAAAACA 59.120 45.455 0.00 0.00 0.00 2.83
2787 6020 7.307694 GTGAGTCTGCATCAAAACATTATCAA 58.692 34.615 0.00 0.00 0.00 2.57
2794 6027 7.440198 TGCATCAAAACATTATCAAGTGGAAA 58.560 30.769 0.00 0.00 0.00 3.13
2815 6056 9.820725 TGGAAATGAATGAATAGGCATAAAAAG 57.179 29.630 0.00 0.00 0.00 2.27
2840 6081 9.549078 AGTAAAGAAAAACTTCTACTCCTTCTG 57.451 33.333 0.00 0.00 37.93 3.02
2841 6082 9.327628 GTAAAGAAAAACTTCTACTCCTTCTGT 57.672 33.333 0.00 0.00 37.93 3.41
2842 6083 8.809468 AAAGAAAAACTTCTACTCCTTCTGTT 57.191 30.769 0.00 0.00 37.93 3.16
2843 6084 8.439993 AAGAAAAACTTCTACTCCTTCTGTTC 57.560 34.615 0.00 0.00 32.91 3.18
2844 6085 7.565680 AGAAAAACTTCTACTCCTTCTGTTCA 58.434 34.615 0.00 0.00 0.00 3.18
2845 6086 7.496263 AGAAAAACTTCTACTCCTTCTGTTCAC 59.504 37.037 0.00 0.00 0.00 3.18
2846 6087 6.487299 AAACTTCTACTCCTTCTGTTCACT 57.513 37.500 0.00 0.00 0.00 3.41
2847 6088 6.487299 AACTTCTACTCCTTCTGTTCACTT 57.513 37.500 0.00 0.00 0.00 3.16
2848 6089 6.487299 ACTTCTACTCCTTCTGTTCACTTT 57.513 37.500 0.00 0.00 0.00 2.66
2849 6090 6.890293 ACTTCTACTCCTTCTGTTCACTTTT 58.110 36.000 0.00 0.00 0.00 2.27
2850 6091 8.019656 ACTTCTACTCCTTCTGTTCACTTTTA 57.980 34.615 0.00 0.00 0.00 1.52
2851 6092 8.652290 ACTTCTACTCCTTCTGTTCACTTTTAT 58.348 33.333 0.00 0.00 0.00 1.40
2856 6097 8.834749 ACTCCTTCTGTTCACTTTTATAAGAC 57.165 34.615 0.00 0.00 35.30 3.01
2857 6098 7.599245 ACTCCTTCTGTTCACTTTTATAAGACG 59.401 37.037 0.00 0.00 35.30 4.18
2858 6099 7.439381 TCCTTCTGTTCACTTTTATAAGACGT 58.561 34.615 0.00 0.00 35.30 4.34
2859 6100 7.929785 TCCTTCTGTTCACTTTTATAAGACGTT 59.070 33.333 0.00 0.00 35.30 3.99
2860 6101 8.557029 CCTTCTGTTCACTTTTATAAGACGTTT 58.443 33.333 0.00 0.00 35.30 3.60
2861 6102 9.931210 CTTCTGTTCACTTTTATAAGACGTTTT 57.069 29.630 0.00 0.00 35.30 2.43
2868 6109 9.754382 TCACTTTTATAAGACGTTTTAGACAGT 57.246 29.630 4.75 2.52 35.30 3.55
2873 6114 9.970395 TTTATAAGACGTTTTAGACAGTTCAGA 57.030 29.630 4.75 0.00 0.00 3.27
2874 6115 7.870588 ATAAGACGTTTTAGACAGTTCAGAC 57.129 36.000 4.75 0.00 0.00 3.51
2875 6116 5.258456 AGACGTTTTAGACAGTTCAGACA 57.742 39.130 0.00 0.00 0.00 3.41
2876 6117 5.282510 AGACGTTTTAGACAGTTCAGACAG 58.717 41.667 0.00 0.00 0.00 3.51
2877 6118 5.067413 AGACGTTTTAGACAGTTCAGACAGA 59.933 40.000 0.00 0.00 0.00 3.41
2878 6119 5.282510 ACGTTTTAGACAGTTCAGACAGAG 58.717 41.667 0.00 0.00 0.00 3.35
2879 6120 4.149046 CGTTTTAGACAGTTCAGACAGAGC 59.851 45.833 0.00 0.00 0.00 4.09
2880 6121 3.944055 TTAGACAGTTCAGACAGAGCC 57.056 47.619 0.00 0.00 0.00 4.70
2881 6122 0.972883 AGACAGTTCAGACAGAGCCC 59.027 55.000 0.00 0.00 0.00 5.19
2882 6123 0.681733 GACAGTTCAGACAGAGCCCA 59.318 55.000 0.00 0.00 0.00 5.36
2883 6124 1.070758 GACAGTTCAGACAGAGCCCAA 59.929 52.381 0.00 0.00 0.00 4.12
2884 6125 1.490490 ACAGTTCAGACAGAGCCCAAA 59.510 47.619 0.00 0.00 0.00 3.28
2885 6126 2.092429 ACAGTTCAGACAGAGCCCAAAA 60.092 45.455 0.00 0.00 0.00 2.44
2886 6127 2.291741 CAGTTCAGACAGAGCCCAAAAC 59.708 50.000 0.00 0.00 0.00 2.43
2887 6128 2.092429 AGTTCAGACAGAGCCCAAAACA 60.092 45.455 0.00 0.00 0.00 2.83
2888 6129 2.260844 TCAGACAGAGCCCAAAACAG 57.739 50.000 0.00 0.00 0.00 3.16
2889 6130 1.490490 TCAGACAGAGCCCAAAACAGT 59.510 47.619 0.00 0.00 0.00 3.55
2890 6131 2.092429 TCAGACAGAGCCCAAAACAGTT 60.092 45.455 0.00 0.00 0.00 3.16
2891 6132 2.291741 CAGACAGAGCCCAAAACAGTTC 59.708 50.000 0.00 0.00 0.00 3.01
2892 6133 2.092429 AGACAGAGCCCAAAACAGTTCA 60.092 45.455 0.00 0.00 0.00 3.18
2893 6134 2.687935 GACAGAGCCCAAAACAGTTCAA 59.312 45.455 0.00 0.00 0.00 2.69
2894 6135 2.689983 ACAGAGCCCAAAACAGTTCAAG 59.310 45.455 0.00 0.00 0.00 3.02
2895 6136 2.035066 CAGAGCCCAAAACAGTTCAAGG 59.965 50.000 0.00 0.00 0.00 3.61
2896 6137 2.031870 GAGCCCAAAACAGTTCAAGGT 58.968 47.619 0.00 0.00 0.00 3.50
2897 6138 2.031870 AGCCCAAAACAGTTCAAGGTC 58.968 47.619 0.00 0.00 0.00 3.85
2898 6139 1.754226 GCCCAAAACAGTTCAAGGTCA 59.246 47.619 0.00 0.00 0.00 4.02
2899 6140 2.223805 GCCCAAAACAGTTCAAGGTCAG 60.224 50.000 0.00 0.00 0.00 3.51
2900 6141 2.223805 CCCAAAACAGTTCAAGGTCAGC 60.224 50.000 0.00 0.00 0.00 4.26
2901 6142 2.689983 CCAAAACAGTTCAAGGTCAGCT 59.310 45.455 0.00 0.00 0.00 4.24
2902 6143 3.489738 CCAAAACAGTTCAAGGTCAGCTG 60.490 47.826 7.63 7.63 0.00 4.24
2903 6144 2.717639 AACAGTTCAAGGTCAGCTGT 57.282 45.000 14.67 0.00 41.51 4.40
2904 6145 2.246719 ACAGTTCAAGGTCAGCTGTC 57.753 50.000 14.67 8.19 35.78 3.51
2905 6146 1.765314 ACAGTTCAAGGTCAGCTGTCT 59.235 47.619 14.67 9.94 35.78 3.41
2906 6147 2.965831 ACAGTTCAAGGTCAGCTGTCTA 59.034 45.455 14.67 0.00 35.78 2.59
2907 6148 3.388024 ACAGTTCAAGGTCAGCTGTCTAA 59.612 43.478 14.67 2.73 35.78 2.10
2908 6149 4.141711 ACAGTTCAAGGTCAGCTGTCTAAA 60.142 41.667 14.67 8.17 35.78 1.85
2909 6150 4.816385 CAGTTCAAGGTCAGCTGTCTAAAA 59.184 41.667 14.67 7.86 0.00 1.52
2910 6151 4.816925 AGTTCAAGGTCAGCTGTCTAAAAC 59.183 41.667 14.67 17.07 0.00 2.43
2911 6152 4.689612 TCAAGGTCAGCTGTCTAAAACT 57.310 40.909 14.67 0.00 0.00 2.66
2912 6153 5.036117 TCAAGGTCAGCTGTCTAAAACTT 57.964 39.130 14.67 5.14 0.00 2.66
2913 6154 5.057149 TCAAGGTCAGCTGTCTAAAACTTC 58.943 41.667 14.67 0.00 0.00 3.01
2914 6155 4.965200 AGGTCAGCTGTCTAAAACTTCT 57.035 40.909 14.67 0.00 0.00 2.85
2915 6156 5.297569 AGGTCAGCTGTCTAAAACTTCTT 57.702 39.130 14.67 0.00 0.00 2.52
2916 6157 6.420913 AGGTCAGCTGTCTAAAACTTCTTA 57.579 37.500 14.67 0.00 0.00 2.10
2917 6158 6.224584 AGGTCAGCTGTCTAAAACTTCTTAC 58.775 40.000 14.67 0.00 0.00 2.34
2918 6159 5.989777 GGTCAGCTGTCTAAAACTTCTTACA 59.010 40.000 14.67 0.00 0.00 2.41
2919 6160 6.482308 GGTCAGCTGTCTAAAACTTCTTACAA 59.518 38.462 14.67 0.00 0.00 2.41
2920 6161 7.012044 GGTCAGCTGTCTAAAACTTCTTACAAA 59.988 37.037 14.67 0.00 0.00 2.83
2921 6162 8.395633 GTCAGCTGTCTAAAACTTCTTACAAAA 58.604 33.333 14.67 0.00 0.00 2.44
2922 6163 8.612619 TCAGCTGTCTAAAACTTCTTACAAAAG 58.387 33.333 14.67 0.00 0.00 2.27
2923 6164 8.612619 CAGCTGTCTAAAACTTCTTACAAAAGA 58.387 33.333 5.25 0.00 40.03 2.52
2924 6165 8.831550 AGCTGTCTAAAACTTCTTACAAAAGAG 58.168 33.333 0.00 0.00 42.60 2.85
2925 6166 8.827677 GCTGTCTAAAACTTCTTACAAAAGAGA 58.172 33.333 0.00 0.00 42.60 3.10
2928 6169 9.634300 GTCTAAAACTTCTTACAAAAGAGAACG 57.366 33.333 0.00 0.00 42.60 3.95
2929 6170 8.823818 TCTAAAACTTCTTACAAAAGAGAACGG 58.176 33.333 0.00 0.00 42.60 4.44
2930 6171 7.619964 AAAACTTCTTACAAAAGAGAACGGA 57.380 32.000 0.00 0.00 42.60 4.69
2931 6172 6.846325 AACTTCTTACAAAAGAGAACGGAG 57.154 37.500 0.00 0.00 42.60 4.63
2932 6173 5.298347 ACTTCTTACAAAAGAGAACGGAGG 58.702 41.667 0.00 0.00 42.60 4.30
2933 6174 4.267349 TCTTACAAAAGAGAACGGAGGG 57.733 45.455 0.00 0.00 36.80 4.30
2934 6175 3.899360 TCTTACAAAAGAGAACGGAGGGA 59.101 43.478 0.00 0.00 36.80 4.20
2935 6176 2.841442 ACAAAAGAGAACGGAGGGAG 57.159 50.000 0.00 0.00 0.00 4.30
2936 6177 2.047830 ACAAAAGAGAACGGAGGGAGT 58.952 47.619 0.00 0.00 0.00 3.85
2937 6178 3.236896 ACAAAAGAGAACGGAGGGAGTA 58.763 45.455 0.00 0.00 0.00 2.59
2938 6179 3.006644 ACAAAAGAGAACGGAGGGAGTAC 59.993 47.826 0.00 0.00 0.00 2.73
2939 6180 1.849977 AAGAGAACGGAGGGAGTACC 58.150 55.000 0.00 0.00 40.67 3.34
2940 6181 0.702902 AGAGAACGGAGGGAGTACCA 59.297 55.000 0.00 0.00 43.89 3.25
3002 6243 6.598503 TCAATCTGATGGCTTGTATCTTCAT 58.401 36.000 0.00 0.00 0.00 2.57
3007 6248 5.687780 TGATGGCTTGTATCTTCATGATGT 58.312 37.500 8.33 0.02 36.65 3.06
3014 6255 7.380602 GGCTTGTATCTTCATGATGTTTAATGC 59.619 37.037 8.33 7.72 36.65 3.56
3016 6257 6.429624 TGTATCTTCATGATGTTTAATGCGC 58.570 36.000 0.00 0.00 36.65 6.09
3022 6263 2.637947 TGATGTTTAATGCGCCTGCTA 58.362 42.857 4.18 0.00 43.34 3.49
3052 6293 7.324178 AGCAGTAAGTTGTACAATAGAGAAGG 58.676 38.462 12.26 0.00 0.00 3.46
3063 6305 2.856760 TAGAGAAGGATGGCAGAGGT 57.143 50.000 0.00 0.00 0.00 3.85
3065 6307 1.836802 AGAGAAGGATGGCAGAGGTTC 59.163 52.381 0.00 0.00 0.00 3.62
3070 6312 2.133520 AGGATGGCAGAGGTTCATGAT 58.866 47.619 0.00 0.00 0.00 2.45
3071 6313 2.512896 AGGATGGCAGAGGTTCATGATT 59.487 45.455 0.00 0.00 0.00 2.57
3072 6314 3.053095 AGGATGGCAGAGGTTCATGATTT 60.053 43.478 0.00 0.00 0.00 2.17
3073 6315 3.703052 GGATGGCAGAGGTTCATGATTTT 59.297 43.478 0.00 0.00 0.00 1.82
3074 6316 4.161001 GGATGGCAGAGGTTCATGATTTTT 59.839 41.667 0.00 0.00 0.00 1.94
3075 6317 5.360714 GGATGGCAGAGGTTCATGATTTTTA 59.639 40.000 0.00 0.00 0.00 1.52
3076 6318 6.127366 GGATGGCAGAGGTTCATGATTTTTAA 60.127 38.462 0.00 0.00 0.00 1.52
3077 6319 6.271488 TGGCAGAGGTTCATGATTTTTAAG 57.729 37.500 0.00 0.00 0.00 1.85
3078 6320 5.774690 TGGCAGAGGTTCATGATTTTTAAGT 59.225 36.000 0.00 0.00 0.00 2.24
3079 6321 6.945435 TGGCAGAGGTTCATGATTTTTAAGTA 59.055 34.615 0.00 0.00 0.00 2.24
3080 6322 7.615365 TGGCAGAGGTTCATGATTTTTAAGTAT 59.385 33.333 0.00 0.00 0.00 2.12
3081 6323 9.120538 GGCAGAGGTTCATGATTTTTAAGTATA 57.879 33.333 0.00 0.00 0.00 1.47
3082 6324 9.937175 GCAGAGGTTCATGATTTTTAAGTATAC 57.063 33.333 0.00 0.00 0.00 1.47
3106 6348 8.463055 ACTATATCTCCTCTTCCTATCAGACT 57.537 38.462 0.00 0.00 0.00 3.24
3107 6349 8.900802 ACTATATCTCCTCTTCCTATCAGACTT 58.099 37.037 0.00 0.00 0.00 3.01
3108 6350 9.753674 CTATATCTCCTCTTCCTATCAGACTTT 57.246 37.037 0.00 0.00 0.00 2.66
3110 6352 6.537453 TCTCCTCTTCCTATCAGACTTTTG 57.463 41.667 0.00 0.00 0.00 2.44
3111 6353 5.423610 TCTCCTCTTCCTATCAGACTTTTGG 59.576 44.000 0.00 0.00 0.00 3.28
3112 6354 5.342017 TCCTCTTCCTATCAGACTTTTGGA 58.658 41.667 0.00 0.00 0.00 3.53
3113 6355 5.785423 TCCTCTTCCTATCAGACTTTTGGAA 59.215 40.000 0.00 0.00 33.29 3.53
3114 6356 6.445139 TCCTCTTCCTATCAGACTTTTGGAAT 59.555 38.462 0.00 0.00 33.79 3.01
3115 6357 7.623677 TCCTCTTCCTATCAGACTTTTGGAATA 59.376 37.037 0.00 0.00 33.79 1.75
3116 6358 7.930865 CCTCTTCCTATCAGACTTTTGGAATAG 59.069 40.741 0.00 0.00 33.79 1.73
3117 6359 8.380742 TCTTCCTATCAGACTTTTGGAATAGT 57.619 34.615 0.00 0.00 33.79 2.12
3118 6360 8.826765 TCTTCCTATCAGACTTTTGGAATAGTT 58.173 33.333 0.00 0.00 33.79 2.24
3119 6361 8.792830 TTCCTATCAGACTTTTGGAATAGTTG 57.207 34.615 0.00 0.00 0.00 3.16
3120 6362 7.338710 TCCTATCAGACTTTTGGAATAGTTGG 58.661 38.462 0.00 0.00 0.00 3.77
3121 6363 7.037586 TCCTATCAGACTTTTGGAATAGTTGGT 60.038 37.037 0.00 0.00 0.00 3.67
3122 6364 7.611855 CCTATCAGACTTTTGGAATAGTTGGTT 59.388 37.037 0.00 0.00 0.00 3.67
3123 6365 6.633500 TCAGACTTTTGGAATAGTTGGTTG 57.367 37.500 0.00 0.00 0.00 3.77
3124 6366 6.361433 TCAGACTTTTGGAATAGTTGGTTGA 58.639 36.000 0.00 0.00 0.00 3.18
3125 6367 7.004086 TCAGACTTTTGGAATAGTTGGTTGAT 58.996 34.615 0.00 0.00 0.00 2.57
3126 6368 8.160765 TCAGACTTTTGGAATAGTTGGTTGATA 58.839 33.333 0.00 0.00 0.00 2.15
3127 6369 8.454106 CAGACTTTTGGAATAGTTGGTTGATAG 58.546 37.037 0.00 0.00 0.00 2.08
3128 6370 7.611855 AGACTTTTGGAATAGTTGGTTGATAGG 59.388 37.037 0.00 0.00 0.00 2.57
3129 6371 7.466804 ACTTTTGGAATAGTTGGTTGATAGGA 58.533 34.615 0.00 0.00 0.00 2.94
3130 6372 7.947890 ACTTTTGGAATAGTTGGTTGATAGGAA 59.052 33.333 0.00 0.00 0.00 3.36
3131 6373 8.893563 TTTTGGAATAGTTGGTTGATAGGAAT 57.106 30.769 0.00 0.00 0.00 3.01
3132 6374 9.983024 TTTTGGAATAGTTGGTTGATAGGAATA 57.017 29.630 0.00 0.00 0.00 1.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
72 73 3.396260 TCTTGTAAACCCTCCAACTCG 57.604 47.619 0.00 0.00 0.00 4.18
144 145 3.529533 CTCCAACTCTAGGTCATTGCAG 58.470 50.000 0.00 0.00 0.00 4.41
183 187 2.959030 AGAACCCTTCAACTTTGGAAGC 59.041 45.455 0.00 0.00 40.29 3.86
216 220 3.769536 CAACAAGCGTCCAAGAGTTTTT 58.230 40.909 0.00 0.00 0.00 1.94
254 258 8.621532 TGTTAATATAGATTCCCAATGTGCTC 57.378 34.615 0.00 0.00 0.00 4.26
256 260 8.850156 ACTTGTTAATATAGATTCCCAATGTGC 58.150 33.333 0.00 0.00 0.00 4.57
276 280 5.680619 TCTAACATCCACAACTCACTTGTT 58.319 37.500 0.00 0.00 41.50 2.83
292 296 6.524734 TGTCAGTCACATCTTGTTCTAACAT 58.475 36.000 0.00 0.00 38.95 2.71
293 297 5.912892 TGTCAGTCACATCTTGTTCTAACA 58.087 37.500 0.00 0.00 37.08 2.41
294 298 7.426929 AATGTCAGTCACATCTTGTTCTAAC 57.573 36.000 0.00 0.00 45.77 2.34
382 398 6.377996 TCAAATTTGTGATCCTTGGGATACAG 59.622 38.462 17.47 0.00 43.27 2.74
444 460 2.229543 TGCATCTTGAAGTTCCACATGC 59.770 45.455 17.17 17.17 35.05 4.06
445 461 4.157105 TGATGCATCTTGAAGTTCCACATG 59.843 41.667 26.32 0.00 0.00 3.21
455 477 7.031372 GTCAAAAGCTAATGATGCATCTTGAA 58.969 34.615 26.32 7.58 31.49 2.69
472 494 3.975035 CCTTTTACAAGCTCGTCAAAAGC 59.025 43.478 13.32 0.00 40.14 3.51
473 495 4.036380 ACCCTTTTACAAGCTCGTCAAAAG 59.964 41.667 12.40 12.40 36.45 2.27
480 502 4.003648 AGAATGACCCTTTTACAAGCTCG 58.996 43.478 0.00 0.00 0.00 5.03
511 533 6.265196 ACATACTGAAAATTTGACTTGGCTGA 59.735 34.615 0.00 0.00 0.00 4.26
527 549 8.615211 GCATCAAGTCATGAATTACATACTGAA 58.385 33.333 8.27 0.00 42.54 3.02
528 550 7.769970 TGCATCAAGTCATGAATTACATACTGA 59.230 33.333 8.27 0.93 42.54 3.41
529 551 7.854422 GTGCATCAAGTCATGAATTACATACTG 59.146 37.037 8.27 0.00 42.54 2.74
555 610 2.342651 CGAGACAAGTTGTGCTGTATCG 59.657 50.000 14.57 3.77 39.09 2.92
632 687 5.287274 GTGAATACTGACAGATGACGAACAG 59.713 44.000 10.08 0.00 0.00 3.16
667 722 4.461781 CCTCTTCAATTCAGAACAGCCAAT 59.538 41.667 0.00 0.00 0.00 3.16
717 772 6.294899 GGCTGTATGATTCATTGCATACCAAT 60.295 38.462 4.14 0.00 43.78 3.16
765 820 4.339247 AGTTCCTTGAACCAACAGTCAATG 59.661 41.667 3.47 0.00 42.85 2.82
852 907 3.001736 GGTATCGCAGATGCTTTGAGTTC 59.998 47.826 2.95 0.00 45.12 3.01
893 948 5.843019 TGAAGGAAGGGTTCTGAAAGTAT 57.157 39.130 0.00 0.00 33.76 2.12
969 1027 4.207165 TGAAGTCTTCAGGGAAACTTTGG 58.793 43.478 11.36 0.00 34.08 3.28
1095 1165 4.036498 GCTTCAATCTGGTTCTCCATCATG 59.964 45.833 0.00 0.00 43.43 3.07
1118 1188 3.616956 TTAGATTCCAGTGAGGCAGTG 57.383 47.619 0.00 0.00 37.29 3.66
1155 1225 5.669447 AGGACAAGATTCACCTCCATAATCT 59.331 40.000 0.00 0.00 40.74 2.40
1218 1288 9.739276 ATGTTCTTACAATAACTCAATTCCAGA 57.261 29.630 0.00 0.00 37.91 3.86
1227 1297 9.209175 ACACTCTGAATGTTCTTACAATAACTC 57.791 33.333 0.00 0.00 37.91 3.01
1233 1303 9.725019 AATGATACACTCTGAATGTTCTTACAA 57.275 29.630 0.00 0.00 37.91 2.41
1282 1352 3.306364 CGAAGGTTGTCTTCCTGATCTGT 60.306 47.826 0.00 0.00 46.93 3.41
1304 1383 4.036734 TGATGTCCAAAACTTCAAGACAGC 59.963 41.667 0.00 0.00 42.58 4.40
1306 1385 5.436175 TCTGATGTCCAAAACTTCAAGACA 58.564 37.500 0.00 0.00 40.41 3.41
1369 1448 7.143052 AGGATAATCTTTCTAAGAGAAGGGGT 58.857 38.462 0.00 0.00 41.61 4.95
1459 1540 4.864247 CCATTTGGTCGACATTTTCCATTC 59.136 41.667 18.91 0.00 0.00 2.67
1491 1577 0.329261 TCCAGACTTGCAGGGGAATG 59.671 55.000 0.00 0.00 0.00 2.67
1547 1633 5.164620 TGACATAAGAGAGGCACAATCAA 57.835 39.130 0.00 0.00 0.00 2.57
1579 1665 3.352222 GCTGCTGCTTGCGTCAGT 61.352 61.111 8.53 0.00 46.63 3.41
1584 1670 3.800863 CTCCTGCTGCTGCTTGCG 61.801 66.667 17.00 2.93 46.63 4.85
1599 1685 2.941720 GGATGAGAATGCTCCAACACTC 59.058 50.000 0.00 0.00 40.55 3.51
1624 1713 6.406370 TGCAGCCGCTAATATATAGAACAAT 58.594 36.000 0.00 0.00 39.64 2.71
1649 1738 4.789012 TCATCAAGGCTCAACAATTTCC 57.211 40.909 0.00 0.00 0.00 3.13
1677 1766 2.840651 AGCAGGTAGATAAGCAGGTGTT 59.159 45.455 0.00 0.00 0.00 3.32
1697 1786 3.181467 TGTCACCCAAATTTCCTTTGCAG 60.181 43.478 0.00 0.00 42.46 4.41
1700 1789 4.202346 ACCATGTCACCCAAATTTCCTTTG 60.202 41.667 0.00 0.00 43.27 2.77
1701 1790 3.973305 ACCATGTCACCCAAATTTCCTTT 59.027 39.130 0.00 0.00 0.00 3.11
1714 1803 5.106712 ACGTCAATTCATTACACCATGTCAC 60.107 40.000 0.00 0.00 0.00 3.67
1718 1807 4.201910 GGGACGTCAATTCATTACACCATG 60.202 45.833 18.91 0.00 0.00 3.66
1719 1808 3.945285 GGGACGTCAATTCATTACACCAT 59.055 43.478 18.91 0.00 0.00 3.55
1720 1809 3.008594 AGGGACGTCAATTCATTACACCA 59.991 43.478 18.91 0.00 0.00 4.17
1721 1810 3.374058 CAGGGACGTCAATTCATTACACC 59.626 47.826 18.91 4.41 0.00 4.16
1722 1811 3.181510 GCAGGGACGTCAATTCATTACAC 60.182 47.826 18.91 0.00 0.00 2.90
1756 1845 5.774690 TCTGCAAAGAAGTAAAATGGTGGAT 59.225 36.000 0.00 0.00 0.00 3.41
1761 1850 4.219288 AGCCTCTGCAAAGAAGTAAAATGG 59.781 41.667 0.00 0.00 41.13 3.16
1762 1851 5.382618 AGCCTCTGCAAAGAAGTAAAATG 57.617 39.130 0.00 0.00 41.13 2.32
1763 1852 4.154918 CGAGCCTCTGCAAAGAAGTAAAAT 59.845 41.667 0.00 0.00 41.13 1.82
1772 1861 2.476854 GCAATAACGAGCCTCTGCAAAG 60.477 50.000 0.00 0.00 41.13 2.77
1781 1870 3.179048 GGACAATTTGCAATAACGAGCC 58.821 45.455 0.00 0.00 0.00 4.70
1785 1874 6.523676 AACTTTGGACAATTTGCAATAACG 57.476 33.333 0.00 0.00 35.14 3.18
1793 1882 7.863375 TCGGTGTATTTAACTTTGGACAATTTG 59.137 33.333 0.00 0.00 0.00 2.32
1795 1884 7.513371 TCGGTGTATTTAACTTTGGACAATT 57.487 32.000 0.00 0.00 0.00 2.32
1829 1918 4.706842 TGCTTAAGGGAGGATGGTAATC 57.293 45.455 4.29 0.00 0.00 1.75
1849 1938 5.335426 CCAGACATGACTCCAAACTGAAATG 60.335 44.000 0.00 0.00 0.00 2.32
1855 1944 1.271597 GCCCAGACATGACTCCAAACT 60.272 52.381 0.00 0.00 0.00 2.66
1995 2084 6.000246 TCTGGGCAATGAAGAATATACACA 58.000 37.500 0.00 0.00 0.00 3.72
2023 2112 4.335874 TCGAAGAGGCTGTCTTACATCTAC 59.664 45.833 0.00 0.00 46.21 2.59
2024 2113 4.335874 GTCGAAGAGGCTGTCTTACATCTA 59.664 45.833 0.00 0.00 46.21 1.98
2028 2117 2.235891 TGTCGAAGAGGCTGTCTTACA 58.764 47.619 0.00 2.49 46.21 2.41
2048 2137 7.773690 GGTGACATAATACATACCAGTTTCCTT 59.226 37.037 0.00 0.00 0.00 3.36
2109 2200 4.280174 GGCCACGTATATACTTTGAGAGGA 59.720 45.833 11.05 0.00 0.00 3.71
2113 2204 3.741344 GCTGGCCACGTATATACTTTGAG 59.259 47.826 0.00 3.67 0.00 3.02
2116 2207 5.740290 ATAGCTGGCCACGTATATACTTT 57.260 39.130 0.00 0.00 0.00 2.66
2161 2254 4.305989 ACTGAGCTTCATTTCGCAAAAA 57.694 36.364 0.00 0.00 0.00 1.94
2164 2257 5.466728 GGATATACTGAGCTTCATTTCGCAA 59.533 40.000 0.00 0.00 0.00 4.85
2165 2258 4.991056 GGATATACTGAGCTTCATTTCGCA 59.009 41.667 0.00 0.00 0.00 5.10
2166 2259 5.233988 AGGATATACTGAGCTTCATTTCGC 58.766 41.667 0.00 0.00 0.00 4.70
2171 2264 8.484214 TCAAGTTAGGATATACTGAGCTTCAT 57.516 34.615 0.00 0.00 0.00 2.57
2172 2265 7.898014 TCAAGTTAGGATATACTGAGCTTCA 57.102 36.000 0.00 0.00 0.00 3.02
2173 2266 9.036671 GTTTCAAGTTAGGATATACTGAGCTTC 57.963 37.037 0.00 0.00 0.00 3.86
2224 3467 7.736893 TGGCTAAAAAGAAAGACTCTAGAGTT 58.263 34.615 25.86 11.05 42.66 3.01
2229 3472 7.038302 TGGATCTGGCTAAAAAGAAAGACTCTA 60.038 37.037 0.00 0.00 32.46 2.43
2231 3474 5.940470 TGGATCTGGCTAAAAAGAAAGACTC 59.060 40.000 0.00 0.00 0.00 3.36
2254 3499 4.319477 CGGTAGAACACTTTCCAATGTGTG 60.319 45.833 10.73 0.00 43.74 3.82
2257 3502 4.081322 ACGGTAGAACACTTTCCAATGT 57.919 40.909 0.00 0.00 31.28 2.71
2263 3508 2.223377 CCAGCAACGGTAGAACACTTTC 59.777 50.000 0.00 0.00 0.00 2.62
2276 4025 7.810766 AATGTTTAACATAAATCCAGCAACG 57.189 32.000 11.23 0.00 37.97 4.10
2277 4026 9.202273 TGAAATGTTTAACATAAATCCAGCAAC 57.798 29.630 11.23 0.00 37.97 4.17
2312 4072 2.608752 GCAACTTGGGTCTTGATTGCTG 60.609 50.000 0.00 0.00 39.42 4.41
2313 4073 1.615392 GCAACTTGGGTCTTGATTGCT 59.385 47.619 0.00 0.00 39.42 3.91
2316 4076 3.493176 GCAAAGCAACTTGGGTCTTGATT 60.493 43.478 0.00 0.00 0.00 2.57
2321 4081 0.396974 TGGCAAAGCAACTTGGGTCT 60.397 50.000 0.00 0.00 0.00 3.85
2326 4086 4.352887 CCAAAAATTGGCAAAGCAACTTG 58.647 39.130 3.01 2.80 45.17 3.16
2327 4087 4.635833 CCAAAAATTGGCAAAGCAACTT 57.364 36.364 3.01 0.00 45.17 2.66
2357 4117 3.245016 TGGATTATATGAGGGCCTGCTTG 60.245 47.826 12.95 0.00 0.00 4.01
2359 4119 2.636005 TGGATTATATGAGGGCCTGCT 58.364 47.619 12.95 0.00 0.00 4.24
2361 4121 6.903516 TCATATTGGATTATATGAGGGCCTG 58.096 40.000 12.95 0.00 40.70 4.85
2362 4122 7.718399 ATCATATTGGATTATATGAGGGCCT 57.282 36.000 5.25 5.25 45.65 5.19
2363 4123 9.512588 CTAATCATATTGGATTATATGAGGGCC 57.487 37.037 0.00 0.00 45.65 5.80
2364 4124 9.512588 CCTAATCATATTGGATTATATGAGGGC 57.487 37.037 10.86 0.00 45.65 5.19
2382 4142 9.853177 CCTAACAATAGAAAACTCCCTAATCAT 57.147 33.333 0.00 0.00 0.00 2.45
2383 4143 9.053472 TCCTAACAATAGAAAACTCCCTAATCA 57.947 33.333 0.00 0.00 0.00 2.57
2384 4144 9.549078 CTCCTAACAATAGAAAACTCCCTAATC 57.451 37.037 0.00 0.00 0.00 1.75
2385 4145 9.280456 TCTCCTAACAATAGAAAACTCCCTAAT 57.720 33.333 0.00 0.00 0.00 1.73
2386 4146 8.674925 TCTCCTAACAATAGAAAACTCCCTAA 57.325 34.615 0.00 0.00 0.00 2.69
2388 4148 7.757242 ATCTCCTAACAATAGAAAACTCCCT 57.243 36.000 0.00 0.00 0.00 4.20
2428 4188 8.684520 AGCATATACTAGTTACACTCGTCTTTT 58.315 33.333 0.00 0.00 0.00 2.27
2429 4189 8.223177 AGCATATACTAGTTACACTCGTCTTT 57.777 34.615 0.00 0.00 0.00 2.52
2430 4190 7.498239 TGAGCATATACTAGTTACACTCGTCTT 59.502 37.037 0.00 0.00 0.00 3.01
2431 4191 6.990939 TGAGCATATACTAGTTACACTCGTCT 59.009 38.462 0.00 0.00 0.00 4.18
2432 4192 7.187244 TGAGCATATACTAGTTACACTCGTC 57.813 40.000 0.00 0.00 0.00 4.20
2433 4193 7.563888 TTGAGCATATACTAGTTACACTCGT 57.436 36.000 0.00 0.00 0.00 4.18
2453 4213 7.541783 TCCATTTTTGTTCATTCGCTATTTGAG 59.458 33.333 0.00 0.00 0.00 3.02
2454 4214 7.374272 TCCATTTTTGTTCATTCGCTATTTGA 58.626 30.769 0.00 0.00 0.00 2.69
2456 4216 8.600449 TTTCCATTTTTGTTCATTCGCTATTT 57.400 26.923 0.00 0.00 0.00 1.40
2457 4217 8.600449 TTTTCCATTTTTGTTCATTCGCTATT 57.400 26.923 0.00 0.00 0.00 1.73
2458 4218 8.658609 CATTTTCCATTTTTGTTCATTCGCTAT 58.341 29.630 0.00 0.00 0.00 2.97
2459 4219 7.869937 TCATTTTCCATTTTTGTTCATTCGCTA 59.130 29.630 0.00 0.00 0.00 4.26
2460 4220 6.705381 TCATTTTCCATTTTTGTTCATTCGCT 59.295 30.769 0.00 0.00 0.00 4.93
2491 5724 4.082125 GGCCCTTCATGGATATGGTTAAG 58.918 47.826 0.00 0.00 38.35 1.85
2519 5752 5.609423 ACATATTGCTTGCTTGTCCAAAAA 58.391 33.333 0.00 0.00 0.00 1.94
2520 5753 5.212532 ACATATTGCTTGCTTGTCCAAAA 57.787 34.783 0.00 0.00 0.00 2.44
2524 5757 8.925161 TTAATTAACATATTGCTTGCTTGTCC 57.075 30.769 0.00 0.00 0.00 4.02
2526 5759 9.236691 CGATTAATTAACATATTGCTTGCTTGT 57.763 29.630 0.00 0.00 0.00 3.16
2527 5760 9.449550 TCGATTAATTAACATATTGCTTGCTTG 57.550 29.630 0.00 0.00 0.00 4.01
2552 5785 5.411053 GGCTAATGGTTCTTGATGAGCTATC 59.589 44.000 0.00 0.00 36.29 2.08
2553 5786 5.072872 AGGCTAATGGTTCTTGATGAGCTAT 59.927 40.000 0.00 0.00 0.00 2.97
2559 5792 4.396166 ACGAAAGGCTAATGGTTCTTGATG 59.604 41.667 0.00 0.00 0.00 3.07
2560 5793 4.396166 CACGAAAGGCTAATGGTTCTTGAT 59.604 41.667 0.00 0.00 0.00 2.57
2569 5802 3.559238 AGTTTGCACGAAAGGCTAATG 57.441 42.857 0.00 0.00 0.00 1.90
2570 5803 4.941263 TGATAGTTTGCACGAAAGGCTAAT 59.059 37.500 0.00 0.00 0.00 1.73
2571 5804 4.320023 TGATAGTTTGCACGAAAGGCTAA 58.680 39.130 0.00 0.00 0.00 3.09
2572 5805 3.932822 TGATAGTTTGCACGAAAGGCTA 58.067 40.909 0.00 0.00 0.00 3.93
2573 5806 2.778299 TGATAGTTTGCACGAAAGGCT 58.222 42.857 0.00 0.00 0.00 4.58
2574 5807 3.188460 TCTTGATAGTTTGCACGAAAGGC 59.812 43.478 0.00 0.00 0.00 4.35
2575 5808 5.356882 TTCTTGATAGTTTGCACGAAAGG 57.643 39.130 0.00 0.00 0.00 3.11
2576 5809 7.858052 AATTTCTTGATAGTTTGCACGAAAG 57.142 32.000 0.00 0.00 36.27 2.62
2577 5810 8.060020 CAAATTTCTTGATAGTTTGCACGAAA 57.940 30.769 0.00 0.00 36.91 3.46
2578 5811 7.621832 CAAATTTCTTGATAGTTTGCACGAA 57.378 32.000 0.00 0.00 0.00 3.85
2615 5848 9.239551 GGTTCTTTGGTGGTTAATCTAATACTT 57.760 33.333 0.00 0.00 0.00 2.24
2616 5849 8.387813 TGGTTCTTTGGTGGTTAATCTAATACT 58.612 33.333 0.00 0.00 0.00 2.12
2617 5850 8.570068 TGGTTCTTTGGTGGTTAATCTAATAC 57.430 34.615 0.00 0.00 0.00 1.89
2618 5851 9.403583 GATGGTTCTTTGGTGGTTAATCTAATA 57.596 33.333 0.00 0.00 0.00 0.98
2619 5852 7.893302 TGATGGTTCTTTGGTGGTTAATCTAAT 59.107 33.333 0.00 0.00 0.00 1.73
2620 5853 7.175990 GTGATGGTTCTTTGGTGGTTAATCTAA 59.824 37.037 0.00 0.00 0.00 2.10
2621 5854 6.657541 GTGATGGTTCTTTGGTGGTTAATCTA 59.342 38.462 0.00 0.00 0.00 1.98
2622 5855 5.476945 GTGATGGTTCTTTGGTGGTTAATCT 59.523 40.000 0.00 0.00 0.00 2.40
2623 5856 5.476945 AGTGATGGTTCTTTGGTGGTTAATC 59.523 40.000 0.00 0.00 0.00 1.75
2624 5857 5.243730 CAGTGATGGTTCTTTGGTGGTTAAT 59.756 40.000 0.00 0.00 0.00 1.40
2625 5858 4.582656 CAGTGATGGTTCTTTGGTGGTTAA 59.417 41.667 0.00 0.00 0.00 2.01
2626 5859 4.141287 CAGTGATGGTTCTTTGGTGGTTA 58.859 43.478 0.00 0.00 0.00 2.85
2627 5860 2.958355 CAGTGATGGTTCTTTGGTGGTT 59.042 45.455 0.00 0.00 0.00 3.67
2628 5861 2.091885 ACAGTGATGGTTCTTTGGTGGT 60.092 45.455 0.00 0.00 0.00 4.16
2629 5862 2.586425 ACAGTGATGGTTCTTTGGTGG 58.414 47.619 0.00 0.00 0.00 4.61
2630 5863 5.003160 TCATACAGTGATGGTTCTTTGGTG 58.997 41.667 0.00 0.00 0.00 4.17
2631 5864 5.241403 TCATACAGTGATGGTTCTTTGGT 57.759 39.130 0.00 0.00 0.00 3.67
2632 5865 6.573664 TTTCATACAGTGATGGTTCTTTGG 57.426 37.500 0.00 0.00 36.54 3.28
2633 5866 7.031372 CCATTTCATACAGTGATGGTTCTTTG 58.969 38.462 0.00 0.00 36.54 2.77
2634 5867 6.947733 TCCATTTCATACAGTGATGGTTCTTT 59.052 34.615 0.00 0.00 37.93 2.52
2635 5868 6.484288 TCCATTTCATACAGTGATGGTTCTT 58.516 36.000 0.00 0.00 37.93 2.52
2636 5869 6.065976 TCCATTTCATACAGTGATGGTTCT 57.934 37.500 0.00 0.00 37.93 3.01
2637 5870 6.757897 TTCCATTTCATACAGTGATGGTTC 57.242 37.500 0.00 0.00 37.93 3.62
2638 5871 7.537596 TTTTCCATTTCATACAGTGATGGTT 57.462 32.000 0.00 0.00 37.93 3.67
2639 5872 7.537596 TTTTTCCATTTCATACAGTGATGGT 57.462 32.000 0.00 0.00 37.93 3.55
2660 5893 3.823304 GGATGTTGCCACTCTCTCTTTTT 59.177 43.478 0.00 0.00 0.00 1.94
2661 5894 3.181440 TGGATGTTGCCACTCTCTCTTTT 60.181 43.478 0.00 0.00 31.66 2.27
2662 5895 2.373169 TGGATGTTGCCACTCTCTCTTT 59.627 45.455 0.00 0.00 31.66 2.52
2663 5896 1.980765 TGGATGTTGCCACTCTCTCTT 59.019 47.619 0.00 0.00 31.66 2.85
2664 5897 1.649321 TGGATGTTGCCACTCTCTCT 58.351 50.000 0.00 0.00 31.66 3.10
2665 5898 2.093288 TCATGGATGTTGCCACTCTCTC 60.093 50.000 0.00 0.00 41.56 3.20
2666 5899 1.911357 TCATGGATGTTGCCACTCTCT 59.089 47.619 0.00 0.00 41.56 3.10
2667 5900 2.408271 TCATGGATGTTGCCACTCTC 57.592 50.000 0.00 0.00 41.56 3.20
2668 5901 2.651455 CATCATGGATGTTGCCACTCT 58.349 47.619 0.00 0.00 41.56 3.24
2669 5902 1.679680 CCATCATGGATGTTGCCACTC 59.320 52.381 0.00 0.00 40.96 3.51
2670 5903 1.771565 CCATCATGGATGTTGCCACT 58.228 50.000 0.00 0.00 40.96 4.00
2671 5904 0.103572 GCCATCATGGATGTTGCCAC 59.896 55.000 8.30 0.00 40.96 5.01
2672 5905 0.032912 AGCCATCATGGATGTTGCCA 60.033 50.000 8.30 0.00 40.96 4.92
2673 5906 2.816746 AGCCATCATGGATGTTGCC 58.183 52.632 8.30 0.00 40.96 4.52
2679 5912 1.066585 AGGAGGCAGCCATCATGGAT 61.067 55.000 15.80 0.00 40.96 3.41
2680 5913 1.695239 AGGAGGCAGCCATCATGGA 60.695 57.895 15.80 0.00 40.96 3.41
2681 5914 1.228184 GAGGAGGCAGCCATCATGG 60.228 63.158 15.80 0.00 41.55 3.66
2682 5915 0.535328 CTGAGGAGGCAGCCATCATG 60.535 60.000 15.80 5.50 0.00 3.07
2683 5916 0.987081 ACTGAGGAGGCAGCCATCAT 60.987 55.000 15.80 5.96 39.51 2.45
2684 5917 0.325577 TACTGAGGAGGCAGCCATCA 60.326 55.000 15.80 13.56 39.51 3.07
2685 5918 0.833287 TTACTGAGGAGGCAGCCATC 59.167 55.000 15.80 9.29 39.51 3.51
2686 5919 0.543749 GTTACTGAGGAGGCAGCCAT 59.456 55.000 15.80 0.00 39.51 4.40
2687 5920 1.888436 CGTTACTGAGGAGGCAGCCA 61.888 60.000 15.80 0.00 39.51 4.75
2688 5921 1.153549 CGTTACTGAGGAGGCAGCC 60.154 63.158 1.84 1.84 39.51 4.85
2689 5922 1.153549 CCGTTACTGAGGAGGCAGC 60.154 63.158 0.00 0.00 39.51 5.25
2690 5923 0.108615 CACCGTTACTGAGGAGGCAG 60.109 60.000 0.00 0.00 41.63 4.85
2691 5924 0.541063 TCACCGTTACTGAGGAGGCA 60.541 55.000 0.00 0.00 0.00 4.75
2692 5925 0.824759 ATCACCGTTACTGAGGAGGC 59.175 55.000 0.00 0.00 0.00 4.70
2693 5926 2.100197 TGATCACCGTTACTGAGGAGG 58.900 52.381 0.00 0.00 0.00 4.30
2694 5927 3.243569 GGATGATCACCGTTACTGAGGAG 60.244 52.174 0.00 0.00 0.00 3.69
2695 5928 2.693591 GGATGATCACCGTTACTGAGGA 59.306 50.000 0.00 0.00 0.00 3.71
2696 5929 2.224066 GGGATGATCACCGTTACTGAGG 60.224 54.545 0.00 0.00 0.00 3.86
2697 5930 2.224066 GGGGATGATCACCGTTACTGAG 60.224 54.545 0.00 0.00 25.31 3.35
2698 5931 1.760613 GGGGATGATCACCGTTACTGA 59.239 52.381 0.00 0.00 25.31 3.41
2699 5932 1.484653 TGGGGATGATCACCGTTACTG 59.515 52.381 9.53 0.00 45.00 2.74
2700 5933 1.485066 GTGGGGATGATCACCGTTACT 59.515 52.381 9.53 0.00 45.00 2.24
2701 5934 1.805120 CGTGGGGATGATCACCGTTAC 60.805 57.143 9.53 0.69 45.00 2.50
2702 5935 0.462375 CGTGGGGATGATCACCGTTA 59.538 55.000 9.53 0.00 45.00 3.18
2703 5936 1.220749 CGTGGGGATGATCACCGTT 59.779 57.895 9.53 0.00 45.00 4.44
2704 5937 1.550130 AACGTGGGGATGATCACCGT 61.550 55.000 9.53 0.85 45.00 4.83
2705 5938 0.462375 TAACGTGGGGATGATCACCG 59.538 55.000 9.53 0.15 45.00 4.94
2706 5939 1.485066 AGTAACGTGGGGATGATCACC 59.515 52.381 6.81 6.81 41.45 4.02
2707 5940 2.550978 CAGTAACGTGGGGATGATCAC 58.449 52.381 0.00 0.00 0.00 3.06
2708 5941 1.134521 GCAGTAACGTGGGGATGATCA 60.135 52.381 0.00 0.00 0.00 2.92
2709 5942 1.139058 AGCAGTAACGTGGGGATGATC 59.861 52.381 0.00 0.00 0.00 2.92
2710 5943 1.139058 GAGCAGTAACGTGGGGATGAT 59.861 52.381 0.00 0.00 0.00 2.45
2711 5944 0.535335 GAGCAGTAACGTGGGGATGA 59.465 55.000 0.00 0.00 0.00 2.92
2712 5945 0.249120 TGAGCAGTAACGTGGGGATG 59.751 55.000 0.00 0.00 0.00 3.51
2713 5946 1.139058 GATGAGCAGTAACGTGGGGAT 59.861 52.381 0.00 0.00 0.00 3.85
2714 5947 0.535335 GATGAGCAGTAACGTGGGGA 59.465 55.000 0.00 0.00 0.00 4.81
2715 5948 0.806102 CGATGAGCAGTAACGTGGGG 60.806 60.000 0.00 0.00 0.00 4.96
2716 5949 0.806102 CCGATGAGCAGTAACGTGGG 60.806 60.000 0.00 0.00 0.00 4.61
2717 5950 1.421410 GCCGATGAGCAGTAACGTGG 61.421 60.000 0.00 0.00 0.00 4.94
2718 5951 0.458543 AGCCGATGAGCAGTAACGTG 60.459 55.000 0.00 0.00 34.23 4.49
2719 5952 0.458543 CAGCCGATGAGCAGTAACGT 60.459 55.000 0.00 0.00 34.23 3.99
2720 5953 0.458543 ACAGCCGATGAGCAGTAACG 60.459 55.000 0.00 0.00 29.76 3.18
2721 5954 2.159226 ACTACAGCCGATGAGCAGTAAC 60.159 50.000 0.00 0.00 34.78 2.50
2722 5955 2.100197 ACTACAGCCGATGAGCAGTAA 58.900 47.619 0.00 0.00 34.78 2.24
2723 5956 1.763968 ACTACAGCCGATGAGCAGTA 58.236 50.000 0.00 0.00 34.07 2.74
2724 5957 0.898320 AACTACAGCCGATGAGCAGT 59.102 50.000 0.00 0.00 36.38 4.40
2725 5958 1.284657 CAACTACAGCCGATGAGCAG 58.715 55.000 0.00 0.00 34.23 4.24
2726 5959 0.108186 CCAACTACAGCCGATGAGCA 60.108 55.000 0.00 0.00 34.23 4.26
2727 5960 0.108138 ACCAACTACAGCCGATGAGC 60.108 55.000 0.00 0.00 0.00 4.26
2728 5961 1.799181 CGACCAACTACAGCCGATGAG 60.799 57.143 0.00 0.00 0.00 2.90
2729 5962 0.172578 CGACCAACTACAGCCGATGA 59.827 55.000 0.00 0.00 0.00 2.92
2730 5963 0.806102 CCGACCAACTACAGCCGATG 60.806 60.000 0.00 0.00 0.00 3.84
2731 5964 1.515954 CCGACCAACTACAGCCGAT 59.484 57.895 0.00 0.00 0.00 4.18
2732 5965 2.967397 CCGACCAACTACAGCCGA 59.033 61.111 0.00 0.00 0.00 5.54
2733 5966 2.813908 GCCGACCAACTACAGCCG 60.814 66.667 0.00 0.00 0.00 5.52
2734 5967 2.436115 GGCCGACCAACTACAGCC 60.436 66.667 0.00 0.00 35.26 4.85
2735 5968 2.775032 TTCGGCCGACCAACTACAGC 62.775 60.000 31.19 0.00 34.57 4.40
2751 5984 0.668706 CAGACTCACCAGTGGCTTCG 60.669 60.000 9.78 0.00 30.63 3.79
2757 5990 2.174363 TTGATGCAGACTCACCAGTG 57.826 50.000 0.00 0.00 30.63 3.66
2762 5995 6.845302 TGATAATGTTTTGATGCAGACTCAC 58.155 36.000 0.00 0.00 0.00 3.51
2763 5996 7.175467 ACTTGATAATGTTTTGATGCAGACTCA 59.825 33.333 0.00 0.00 0.00 3.41
2764 5997 7.484007 CACTTGATAATGTTTTGATGCAGACTC 59.516 37.037 0.00 0.00 0.00 3.36
2765 5998 7.310664 CACTTGATAATGTTTTGATGCAGACT 58.689 34.615 0.00 0.00 0.00 3.24
2787 6020 8.537728 TTTATGCCTATTCATTCATTTCCACT 57.462 30.769 0.00 0.00 0.00 4.00
2815 6056 9.327628 ACAGAAGGAGTAGAAGTTTTTCTTTAC 57.672 33.333 0.00 0.00 40.79 2.01
2823 6064 6.487299 AGTGAACAGAAGGAGTAGAAGTTT 57.513 37.500 0.00 0.00 0.00 2.66
2832 6073 7.599245 ACGTCTTATAAAAGTGAACAGAAGGAG 59.401 37.037 0.00 0.00 34.13 3.69
2833 6074 7.439381 ACGTCTTATAAAAGTGAACAGAAGGA 58.561 34.615 0.00 0.00 34.13 3.36
2835 6076 9.931210 AAAACGTCTTATAAAAGTGAACAGAAG 57.069 29.630 0.00 0.00 34.13 2.85
2842 6083 9.754382 ACTGTCTAAAACGTCTTATAAAAGTGA 57.246 29.630 0.00 0.00 34.13 3.41
2847 6088 9.970395 TCTGAACTGTCTAAAACGTCTTATAAA 57.030 29.630 0.00 0.00 0.00 1.40
2848 6089 9.403110 GTCTGAACTGTCTAAAACGTCTTATAA 57.597 33.333 0.00 0.00 0.00 0.98
2849 6090 8.570488 TGTCTGAACTGTCTAAAACGTCTTATA 58.430 33.333 0.00 0.00 0.00 0.98
2850 6091 7.431249 TGTCTGAACTGTCTAAAACGTCTTAT 58.569 34.615 0.00 0.00 0.00 1.73
2851 6092 6.798482 TGTCTGAACTGTCTAAAACGTCTTA 58.202 36.000 0.00 0.00 0.00 2.10
2852 6093 5.657474 TGTCTGAACTGTCTAAAACGTCTT 58.343 37.500 0.00 0.00 0.00 3.01
2853 6094 5.067413 TCTGTCTGAACTGTCTAAAACGTCT 59.933 40.000 0.00 0.00 0.00 4.18
2854 6095 5.279384 TCTGTCTGAACTGTCTAAAACGTC 58.721 41.667 0.00 0.00 0.00 4.34
2855 6096 5.258456 TCTGTCTGAACTGTCTAAAACGT 57.742 39.130 0.00 0.00 0.00 3.99
2856 6097 4.149046 GCTCTGTCTGAACTGTCTAAAACG 59.851 45.833 0.00 0.00 0.00 3.60
2857 6098 4.449405 GGCTCTGTCTGAACTGTCTAAAAC 59.551 45.833 0.00 0.00 0.00 2.43
2858 6099 4.503296 GGGCTCTGTCTGAACTGTCTAAAA 60.503 45.833 0.00 0.00 0.00 1.52
2859 6100 3.006967 GGGCTCTGTCTGAACTGTCTAAA 59.993 47.826 0.00 0.00 0.00 1.85
2860 6101 2.563179 GGGCTCTGTCTGAACTGTCTAA 59.437 50.000 0.00 0.00 0.00 2.10
2861 6102 2.171840 GGGCTCTGTCTGAACTGTCTA 58.828 52.381 0.00 0.00 0.00 2.59
2862 6103 0.972883 GGGCTCTGTCTGAACTGTCT 59.027 55.000 0.00 0.00 0.00 3.41
2863 6104 0.681733 TGGGCTCTGTCTGAACTGTC 59.318 55.000 0.00 0.00 0.00 3.51
2864 6105 1.131638 TTGGGCTCTGTCTGAACTGT 58.868 50.000 0.00 0.00 0.00 3.55
2865 6106 2.260844 TTTGGGCTCTGTCTGAACTG 57.739 50.000 0.00 0.00 0.00 3.16
2866 6107 2.092429 TGTTTTGGGCTCTGTCTGAACT 60.092 45.455 0.00 0.00 0.00 3.01
2867 6108 2.291741 CTGTTTTGGGCTCTGTCTGAAC 59.708 50.000 0.00 0.00 0.00 3.18
2868 6109 2.092429 ACTGTTTTGGGCTCTGTCTGAA 60.092 45.455 0.00 0.00 0.00 3.02
2869 6110 1.490490 ACTGTTTTGGGCTCTGTCTGA 59.510 47.619 0.00 0.00 0.00 3.27
2870 6111 1.972872 ACTGTTTTGGGCTCTGTCTG 58.027 50.000 0.00 0.00 0.00 3.51
2871 6112 2.092429 TGAACTGTTTTGGGCTCTGTCT 60.092 45.455 0.00 0.00 0.00 3.41
2872 6113 2.297701 TGAACTGTTTTGGGCTCTGTC 58.702 47.619 0.00 0.00 0.00 3.51
2873 6114 2.435372 TGAACTGTTTTGGGCTCTGT 57.565 45.000 0.00 0.00 0.00 3.41
2874 6115 2.035066 CCTTGAACTGTTTTGGGCTCTG 59.965 50.000 0.00 0.00 0.00 3.35
2875 6116 2.310538 CCTTGAACTGTTTTGGGCTCT 58.689 47.619 0.00 0.00 0.00 4.09
2876 6117 2.031870 ACCTTGAACTGTTTTGGGCTC 58.968 47.619 0.00 0.00 0.00 4.70
2877 6118 2.031870 GACCTTGAACTGTTTTGGGCT 58.968 47.619 0.00 0.00 0.00 5.19
2878 6119 1.754226 TGACCTTGAACTGTTTTGGGC 59.246 47.619 0.00 0.57 0.00 5.36
2879 6120 2.223805 GCTGACCTTGAACTGTTTTGGG 60.224 50.000 0.00 0.16 0.00 4.12
2880 6121 2.689983 AGCTGACCTTGAACTGTTTTGG 59.310 45.455 0.00 0.48 0.00 3.28
2881 6122 3.129287 ACAGCTGACCTTGAACTGTTTTG 59.871 43.478 23.35 0.00 38.38 2.44
2882 6123 3.356290 ACAGCTGACCTTGAACTGTTTT 58.644 40.909 23.35 0.00 38.38 2.43
2883 6124 2.945668 GACAGCTGACCTTGAACTGTTT 59.054 45.455 23.35 0.00 41.45 2.83
2884 6125 2.171448 AGACAGCTGACCTTGAACTGTT 59.829 45.455 23.35 0.00 41.45 3.16
2885 6126 1.765314 AGACAGCTGACCTTGAACTGT 59.235 47.619 23.35 0.00 43.93 3.55
2886 6127 2.540265 AGACAGCTGACCTTGAACTG 57.460 50.000 23.35 0.00 0.00 3.16
2887 6128 4.689612 TTTAGACAGCTGACCTTGAACT 57.310 40.909 23.35 8.36 0.00 3.01
2888 6129 4.816925 AGTTTTAGACAGCTGACCTTGAAC 59.183 41.667 23.35 20.16 0.00 3.18
2889 6130 5.036117 AGTTTTAGACAGCTGACCTTGAA 57.964 39.130 23.35 11.73 0.00 2.69
2890 6131 4.689612 AGTTTTAGACAGCTGACCTTGA 57.310 40.909 23.35 6.63 0.00 3.02
2891 6132 5.059833 AGAAGTTTTAGACAGCTGACCTTG 58.940 41.667 23.35 0.00 0.00 3.61
2892 6133 5.297569 AGAAGTTTTAGACAGCTGACCTT 57.702 39.130 23.35 12.23 0.00 3.50
2893 6134 4.965200 AGAAGTTTTAGACAGCTGACCT 57.035 40.909 23.35 18.42 0.00 3.85
2894 6135 5.989777 TGTAAGAAGTTTTAGACAGCTGACC 59.010 40.000 23.35 11.74 0.00 4.02
2895 6136 7.478520 TTGTAAGAAGTTTTAGACAGCTGAC 57.521 36.000 23.35 15.44 0.00 3.51
2896 6137 8.500753 TTTTGTAAGAAGTTTTAGACAGCTGA 57.499 30.769 23.35 0.00 0.00 4.26
2897 6138 8.612619 TCTTTTGTAAGAAGTTTTAGACAGCTG 58.387 33.333 13.48 13.48 37.45 4.24
2898 6139 8.732746 TCTTTTGTAAGAAGTTTTAGACAGCT 57.267 30.769 0.00 0.00 37.45 4.24
2899 6140 8.827677 TCTCTTTTGTAAGAAGTTTTAGACAGC 58.172 33.333 0.00 0.00 39.80 4.40
2902 6143 9.634300 CGTTCTCTTTTGTAAGAAGTTTTAGAC 57.366 33.333 0.00 0.00 39.80 2.59
2903 6144 8.823818 CCGTTCTCTTTTGTAAGAAGTTTTAGA 58.176 33.333 0.00 0.00 39.80 2.10
2904 6145 8.823818 TCCGTTCTCTTTTGTAAGAAGTTTTAG 58.176 33.333 0.00 0.00 39.80 1.85
2905 6146 8.721019 TCCGTTCTCTTTTGTAAGAAGTTTTA 57.279 30.769 0.00 0.00 39.80 1.52
2906 6147 7.201705 CCTCCGTTCTCTTTTGTAAGAAGTTTT 60.202 37.037 0.00 0.00 39.80 2.43
2907 6148 6.260271 CCTCCGTTCTCTTTTGTAAGAAGTTT 59.740 38.462 0.00 0.00 39.80 2.66
2908 6149 5.758784 CCTCCGTTCTCTTTTGTAAGAAGTT 59.241 40.000 0.00 0.00 39.80 2.66
2909 6150 5.298347 CCTCCGTTCTCTTTTGTAAGAAGT 58.702 41.667 0.00 0.00 39.80 3.01
2910 6151 4.691216 CCCTCCGTTCTCTTTTGTAAGAAG 59.309 45.833 0.00 0.00 39.80 2.85
2911 6152 4.345837 TCCCTCCGTTCTCTTTTGTAAGAA 59.654 41.667 0.00 0.00 39.80 2.52
2912 6153 3.899360 TCCCTCCGTTCTCTTTTGTAAGA 59.101 43.478 0.00 0.00 38.06 2.10
2913 6154 4.246458 CTCCCTCCGTTCTCTTTTGTAAG 58.754 47.826 0.00 0.00 0.00 2.34
2914 6155 3.644738 ACTCCCTCCGTTCTCTTTTGTAA 59.355 43.478 0.00 0.00 0.00 2.41
2915 6156 3.236896 ACTCCCTCCGTTCTCTTTTGTA 58.763 45.455 0.00 0.00 0.00 2.41
2916 6157 2.047830 ACTCCCTCCGTTCTCTTTTGT 58.952 47.619 0.00 0.00 0.00 2.83
2917 6158 2.841442 ACTCCCTCCGTTCTCTTTTG 57.159 50.000 0.00 0.00 0.00 2.44
2918 6159 2.566279 GGTACTCCCTCCGTTCTCTTTT 59.434 50.000 0.00 0.00 0.00 2.27
2919 6160 2.177734 GGTACTCCCTCCGTTCTCTTT 58.822 52.381 0.00 0.00 0.00 2.52
2920 6161 1.076677 TGGTACTCCCTCCGTTCTCTT 59.923 52.381 0.00 0.00 0.00 2.85
2921 6162 0.702902 TGGTACTCCCTCCGTTCTCT 59.297 55.000 0.00 0.00 0.00 3.10
2922 6163 1.777941 ATGGTACTCCCTCCGTTCTC 58.222 55.000 0.00 0.00 0.00 2.87
2923 6164 2.249309 AATGGTACTCCCTCCGTTCT 57.751 50.000 0.00 0.00 0.00 3.01
2924 6165 4.684484 ATAAATGGTACTCCCTCCGTTC 57.316 45.455 0.00 0.00 32.55 3.95
2925 6166 6.564557 TTAATAAATGGTACTCCCTCCGTT 57.435 37.500 0.00 0.00 34.83 4.44
2926 6167 6.564557 TTTAATAAATGGTACTCCCTCCGT 57.435 37.500 0.00 0.00 0.00 4.69
2927 6168 7.277396 TCTTTTAATAAATGGTACTCCCTCCG 58.723 38.462 0.00 0.00 0.00 4.63
2989 6230 7.112565 CGCATTAAACATCATGAAGATACAAGC 59.887 37.037 4.68 1.54 34.43 4.01
2992 6233 6.429624 GCGCATTAAACATCATGAAGATACA 58.570 36.000 0.30 0.00 34.43 2.29
3002 6243 1.462616 AGCAGGCGCATTAAACATCA 58.537 45.000 10.83 0.00 42.27 3.07
3007 6248 4.811555 CTAATGTAGCAGGCGCATTAAA 57.188 40.909 10.83 0.00 42.27 1.52
3022 6263 9.587772 CTCTATTGTACAACTTACTGCTAATGT 57.412 33.333 11.22 0.00 0.00 2.71
3029 6270 9.307121 CATCCTTCTCTATTGTACAACTTACTG 57.693 37.037 11.22 0.00 0.00 2.74
3035 6276 5.428253 TGCCATCCTTCTCTATTGTACAAC 58.572 41.667 11.22 0.00 0.00 3.32
3052 6293 4.996788 AAAATCATGAACCTCTGCCATC 57.003 40.909 0.00 0.00 0.00 3.51
3080 6322 9.569074 AGTCTGATAGGAAGAGGAGATATAGTA 57.431 37.037 0.00 0.00 0.00 1.82
3081 6323 8.463055 AGTCTGATAGGAAGAGGAGATATAGT 57.537 38.462 0.00 0.00 0.00 2.12
3082 6324 9.753674 AAAGTCTGATAGGAAGAGGAGATATAG 57.246 37.037 0.00 0.00 0.00 1.31
3084 6326 8.869109 CAAAAGTCTGATAGGAAGAGGAGATAT 58.131 37.037 0.00 0.00 0.00 1.63
3085 6327 7.288852 CCAAAAGTCTGATAGGAAGAGGAGATA 59.711 40.741 0.00 0.00 0.00 1.98
3086 6328 6.099557 CCAAAAGTCTGATAGGAAGAGGAGAT 59.900 42.308 0.00 0.00 0.00 2.75
3087 6329 5.423610 CCAAAAGTCTGATAGGAAGAGGAGA 59.576 44.000 0.00 0.00 0.00 3.71
3088 6330 5.423610 TCCAAAAGTCTGATAGGAAGAGGAG 59.576 44.000 0.00 0.00 0.00 3.69
3089 6331 5.342017 TCCAAAAGTCTGATAGGAAGAGGA 58.658 41.667 0.00 0.00 0.00 3.71
3090 6332 5.683876 TCCAAAAGTCTGATAGGAAGAGG 57.316 43.478 0.00 0.00 0.00 3.69
3091 6333 8.482128 ACTATTCCAAAAGTCTGATAGGAAGAG 58.518 37.037 10.95 10.95 45.24 2.85
3092 6334 8.380742 ACTATTCCAAAAGTCTGATAGGAAGA 57.619 34.615 0.00 0.00 38.41 2.87
3093 6335 8.887717 CAACTATTCCAAAAGTCTGATAGGAAG 58.112 37.037 0.00 0.00 38.41 3.46
3094 6336 7.829211 CCAACTATTCCAAAAGTCTGATAGGAA 59.171 37.037 0.00 0.00 39.24 3.36
3095 6337 7.037586 ACCAACTATTCCAAAAGTCTGATAGGA 60.038 37.037 0.00 0.00 0.00 2.94
3096 6338 7.112779 ACCAACTATTCCAAAAGTCTGATAGG 58.887 38.462 0.00 0.00 0.00 2.57
3097 6339 8.454106 CAACCAACTATTCCAAAAGTCTGATAG 58.546 37.037 0.00 0.00 0.00 2.08
3098 6340 8.160765 TCAACCAACTATTCCAAAAGTCTGATA 58.839 33.333 0.00 0.00 0.00 2.15
3099 6341 7.004086 TCAACCAACTATTCCAAAAGTCTGAT 58.996 34.615 0.00 0.00 0.00 2.90
3100 6342 6.361433 TCAACCAACTATTCCAAAAGTCTGA 58.639 36.000 0.00 0.00 0.00 3.27
3101 6343 6.633500 TCAACCAACTATTCCAAAAGTCTG 57.367 37.500 0.00 0.00 0.00 3.51
3102 6344 7.611855 CCTATCAACCAACTATTCCAAAAGTCT 59.388 37.037 0.00 0.00 0.00 3.24
3103 6345 7.610305 TCCTATCAACCAACTATTCCAAAAGTC 59.390 37.037 0.00 0.00 0.00 3.01
3104 6346 7.466804 TCCTATCAACCAACTATTCCAAAAGT 58.533 34.615 0.00 0.00 0.00 2.66
3105 6347 7.938140 TCCTATCAACCAACTATTCCAAAAG 57.062 36.000 0.00 0.00 0.00 2.27
3106 6348 8.893563 ATTCCTATCAACCAACTATTCCAAAA 57.106 30.769 0.00 0.00 0.00 2.44


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.