Multiple sequence alignment - TraesCS6B01G038200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G038200 chr6B 100.000 4140 0 0 1 4140 22560044 22555905 0.000000e+00 7646.0
1 TraesCS6B01G038200 chr6D 93.378 3111 126 34 1084 4140 12311376 12308292 0.000000e+00 4530.0
2 TraesCS6B01G038200 chr6D 84.134 1103 84 44 204 1251 12312318 12311252 0.000000e+00 983.0
3 TraesCS6B01G038200 chr6A 94.151 2855 119 24 1322 4140 13667250 13664408 0.000000e+00 4303.0
4 TraesCS6B01G038200 chr6A 88.797 1580 111 34 659 2210 13667908 13666367 0.000000e+00 1877.0
5 TraesCS6B01G038200 chr6A 89.349 169 15 3 874 1041 14659654 14659488 4.190000e-50 209.0
6 TraesCS6B01G038200 chr2D 89.783 323 25 5 2213 2534 556200416 556200101 1.390000e-109 407.0
7 TraesCS6B01G038200 chr2D 89.164 323 28 5 2213 2534 564446412 564446096 3.000000e-106 396.0
8 TraesCS6B01G038200 chr2D 87.383 214 23 4 12 223 10907336 10907125 4.130000e-60 243.0
9 TraesCS6B01G038200 chr2D 89.714 175 16 2 35 208 492073483 492073310 5.390000e-54 222.0
10 TraesCS6B01G038200 chr2D 97.561 41 1 0 4100 4140 564446074 564446034 2.060000e-08 71.3
11 TraesCS6B01G038200 chr2D 95.122 41 2 0 4100 4140 556200079 556200039 9.610000e-07 65.8
12 TraesCS6B01G038200 chr2D 97.368 38 1 0 4103 4140 564584306 564584269 9.610000e-07 65.8
13 TraesCS6B01G038200 chr2A 88.401 319 29 5 2213 2530 695952116 695951805 1.090000e-100 377.0
14 TraesCS6B01G038200 chr2A 88.088 319 30 5 2213 2530 695776400 695776089 5.050000e-99 372.0
15 TraesCS6B01G038200 chr2A 84.951 206 28 3 11 214 451012278 451012074 5.420000e-49 206.0
16 TraesCS6B01G038200 chr2A 92.308 39 1 2 849 886 729979867 729979830 2.000000e-03 54.7
17 TraesCS6B01G038200 chr4B 87.926 323 31 6 2213 2534 22464859 22465174 1.410000e-99 374.0
18 TraesCS6B01G038200 chr4B 97.561 41 1 0 4100 4140 22465196 22465236 2.060000e-08 71.3
19 TraesCS6B01G038200 chr4A 87.926 323 32 5 2213 2534 30742638 30742322 1.410000e-99 374.0
20 TraesCS6B01G038200 chr4A 100.000 29 0 0 859 887 606347625 606347653 2.000000e-03 54.7
21 TraesCS6B01G038200 chr2B 86.997 323 34 5 2213 2534 663367050 663367365 1.420000e-94 357.0
22 TraesCS6B01G038200 chr2B 97.561 41 1 0 4100 4140 601695564 601695524 2.060000e-08 71.3
23 TraesCS6B01G038200 chr2B 97.561 41 1 0 4100 4140 663367387 663367427 2.060000e-08 71.3
24 TraesCS6B01G038200 chr7D 87.440 207 16 5 11 208 113121067 113120862 3.220000e-56 230.0
25 TraesCS6B01G038200 chr3D 92.208 154 11 1 42 194 540883360 540883207 2.510000e-52 217.0
26 TraesCS6B01G038200 chr3D 97.561 41 1 0 4100 4140 482857851 482857891 2.060000e-08 71.3
27 TraesCS6B01G038200 chr5D 85.572 201 25 3 11 208 484701771 484701572 1.510000e-49 207.0
28 TraesCS6B01G038200 chr7A 85.354 198 25 4 12 208 254431646 254431840 7.020000e-48 202.0
29 TraesCS6B01G038200 chrUn 86.486 185 19 5 27 208 12352111 12352292 9.080000e-47 198.0
30 TraesCS6B01G038200 chr5A 85.946 185 20 5 27 208 682896946 682897127 4.220000e-45 193.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G038200 chr6B 22555905 22560044 4139 True 7646.0 7646 100.000 1 4140 1 chr6B.!!$R1 4139
1 TraesCS6B01G038200 chr6D 12308292 12312318 4026 True 2756.5 4530 88.756 204 4140 2 chr6D.!!$R1 3936
2 TraesCS6B01G038200 chr6A 13664408 13667908 3500 True 3090.0 4303 91.474 659 4140 2 chr6A.!!$R2 3481

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
183 184 0.036388 TGACTGGAAATGGACGGCTC 60.036 55.0 0.00 0.0 0.00 4.70 F
184 185 0.036388 GACTGGAAATGGACGGCTCA 60.036 55.0 0.00 0.0 0.00 4.26 F
976 1018 0.098376 GGTAGAGGTGTAGCACGACG 59.902 60.0 0.00 0.0 34.83 5.12 F
1819 1927 0.536233 ATGCGTGCACAAGGTACCAA 60.536 50.0 18.64 0.0 0.00 3.67 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1819 1927 0.037447 GCTTGGAAGAGAAGCCCAGT 59.963 55.0 0.00 0.0 40.03 4.00 R
1837 1945 0.322816 TGAGCTCCACCTCCATTTGC 60.323 55.0 12.15 0.0 0.00 3.68 R
2384 2527 0.390472 GCCCTCCTGAGAAGTTGACG 60.390 60.0 0.00 0.0 0.00 4.35 R
3440 3589 0.321210 TTGTGCTACGGGTGTCCATG 60.321 55.0 0.00 0.0 0.00 3.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.699894 CCGAGTCCAGCCTGCAGT 61.700 66.667 13.81 0.00 0.00 4.40
18 19 2.125753 CGAGTCCAGCCTGCAGTC 60.126 66.667 13.81 0.00 0.00 3.51
19 20 2.267324 GAGTCCAGCCTGCAGTCC 59.733 66.667 13.81 3.04 0.00 3.85
20 21 3.322318 GAGTCCAGCCTGCAGTCCC 62.322 68.421 13.81 0.27 0.00 4.46
21 22 4.767255 GTCCAGCCTGCAGTCCCG 62.767 72.222 13.81 0.00 0.00 5.14
23 24 4.767255 CCAGCCTGCAGTCCCGTC 62.767 72.222 13.81 0.00 0.00 4.79
27 28 4.135153 CCTGCAGTCCCGTCGGAG 62.135 72.222 14.39 2.83 39.51 4.63
28 29 4.803426 CTGCAGTCCCGTCGGAGC 62.803 72.222 14.39 11.59 39.51 4.70
30 31 4.803426 GCAGTCCCGTCGGAGCAG 62.803 72.222 14.39 2.99 39.51 4.24
31 32 4.135153 CAGTCCCGTCGGAGCAGG 62.135 72.222 14.39 0.00 39.51 4.85
32 33 4.361971 AGTCCCGTCGGAGCAGGA 62.362 66.667 14.39 0.00 39.51 3.86
33 34 3.148279 GTCCCGTCGGAGCAGGAT 61.148 66.667 14.39 0.00 39.51 3.24
34 35 1.826921 GTCCCGTCGGAGCAGGATA 60.827 63.158 14.39 0.00 39.51 2.59
35 36 1.076559 TCCCGTCGGAGCAGGATAA 60.077 57.895 14.39 0.00 32.86 1.75
36 37 1.107538 TCCCGTCGGAGCAGGATAAG 61.108 60.000 14.39 0.00 32.86 1.73
37 38 1.364171 CCGTCGGAGCAGGATAAGG 59.636 63.158 4.91 0.00 0.00 2.69
38 39 1.107538 CCGTCGGAGCAGGATAAGGA 61.108 60.000 4.91 0.00 0.00 3.36
39 40 0.744874 CGTCGGAGCAGGATAAGGAA 59.255 55.000 0.00 0.00 0.00 3.36
40 41 1.269309 CGTCGGAGCAGGATAAGGAAG 60.269 57.143 0.00 0.00 0.00 3.46
41 42 0.753262 TCGGAGCAGGATAAGGAAGC 59.247 55.000 0.00 0.00 0.00 3.86
42 43 0.465705 CGGAGCAGGATAAGGAAGCA 59.534 55.000 0.00 0.00 0.00 3.91
43 44 1.808133 CGGAGCAGGATAAGGAAGCAC 60.808 57.143 0.00 0.00 0.00 4.40
44 45 1.210478 GGAGCAGGATAAGGAAGCACA 59.790 52.381 0.00 0.00 0.00 4.57
45 46 2.284190 GAGCAGGATAAGGAAGCACAC 58.716 52.381 0.00 0.00 0.00 3.82
46 47 1.009829 GCAGGATAAGGAAGCACACG 58.990 55.000 0.00 0.00 0.00 4.49
47 48 1.656652 CAGGATAAGGAAGCACACGG 58.343 55.000 0.00 0.00 0.00 4.94
48 49 1.207089 CAGGATAAGGAAGCACACGGA 59.793 52.381 0.00 0.00 0.00 4.69
49 50 2.119495 AGGATAAGGAAGCACACGGAT 58.881 47.619 0.00 0.00 0.00 4.18
50 51 2.505819 AGGATAAGGAAGCACACGGATT 59.494 45.455 0.00 0.00 0.00 3.01
51 52 3.054361 AGGATAAGGAAGCACACGGATTT 60.054 43.478 0.00 0.00 0.00 2.17
52 53 3.312697 GGATAAGGAAGCACACGGATTTC 59.687 47.826 0.00 0.00 0.00 2.17
53 54 2.568623 AAGGAAGCACACGGATTTCT 57.431 45.000 0.00 0.00 29.95 2.52
54 55 2.100605 AGGAAGCACACGGATTTCTC 57.899 50.000 0.00 0.00 0.00 2.87
55 56 1.347707 AGGAAGCACACGGATTTCTCA 59.652 47.619 0.00 0.00 0.00 3.27
56 57 2.151202 GGAAGCACACGGATTTCTCAA 58.849 47.619 0.00 0.00 0.00 3.02
57 58 2.749621 GGAAGCACACGGATTTCTCAAT 59.250 45.455 0.00 0.00 0.00 2.57
58 59 3.426695 GGAAGCACACGGATTTCTCAATG 60.427 47.826 0.00 0.00 0.00 2.82
59 60 1.470098 AGCACACGGATTTCTCAATGC 59.530 47.619 0.00 0.00 0.00 3.56
65 66 3.575858 CGGATTTCTCAATGCGTGTAG 57.424 47.619 1.15 0.00 46.15 2.74
66 67 3.186909 CGGATTTCTCAATGCGTGTAGA 58.813 45.455 1.15 0.00 46.15 2.59
67 68 3.243877 CGGATTTCTCAATGCGTGTAGAG 59.756 47.826 1.15 0.00 46.15 2.43
68 69 4.184629 GGATTTCTCAATGCGTGTAGAGT 58.815 43.478 0.00 0.00 0.00 3.24
69 70 4.631813 GGATTTCTCAATGCGTGTAGAGTT 59.368 41.667 0.00 0.00 0.00 3.01
70 71 5.122396 GGATTTCTCAATGCGTGTAGAGTTT 59.878 40.000 0.00 0.00 0.00 2.66
71 72 6.348540 GGATTTCTCAATGCGTGTAGAGTTTT 60.349 38.462 0.00 0.00 0.00 2.43
72 73 4.990543 TCTCAATGCGTGTAGAGTTTTG 57.009 40.909 0.00 0.00 0.00 2.44
73 74 4.377021 TCTCAATGCGTGTAGAGTTTTGT 58.623 39.130 0.00 0.00 0.00 2.83
74 75 4.814234 TCTCAATGCGTGTAGAGTTTTGTT 59.186 37.500 0.00 0.00 0.00 2.83
75 76 5.295787 TCTCAATGCGTGTAGAGTTTTGTTT 59.704 36.000 0.00 0.00 0.00 2.83
76 77 5.885881 TCAATGCGTGTAGAGTTTTGTTTT 58.114 33.333 0.00 0.00 0.00 2.43
77 78 6.326375 TCAATGCGTGTAGAGTTTTGTTTTT 58.674 32.000 0.00 0.00 0.00 1.94
78 79 7.473366 TCAATGCGTGTAGAGTTTTGTTTTTA 58.527 30.769 0.00 0.00 0.00 1.52
79 80 8.132362 TCAATGCGTGTAGAGTTTTGTTTTTAT 58.868 29.630 0.00 0.00 0.00 1.40
80 81 8.751335 CAATGCGTGTAGAGTTTTGTTTTTATT 58.249 29.630 0.00 0.00 0.00 1.40
81 82 8.865590 ATGCGTGTAGAGTTTTGTTTTTATTT 57.134 26.923 0.00 0.00 0.00 1.40
82 83 8.690680 TGCGTGTAGAGTTTTGTTTTTATTTT 57.309 26.923 0.00 0.00 0.00 1.82
83 84 8.587950 TGCGTGTAGAGTTTTGTTTTTATTTTG 58.412 29.630 0.00 0.00 0.00 2.44
84 85 8.588789 GCGTGTAGAGTTTTGTTTTTATTTTGT 58.411 29.630 0.00 0.00 0.00 2.83
104 105 9.772973 ATTTTGTAAAGTCTTCCAATTTTACCC 57.227 29.630 4.19 0.00 35.94 3.69
105 106 6.904463 TGTAAAGTCTTCCAATTTTACCCC 57.096 37.500 4.19 0.00 35.94 4.95
106 107 6.616577 TGTAAAGTCTTCCAATTTTACCCCT 58.383 36.000 4.19 0.00 35.94 4.79
107 108 7.070629 TGTAAAGTCTTCCAATTTTACCCCTT 58.929 34.615 4.19 0.00 35.94 3.95
108 109 6.419484 AAAGTCTTCCAATTTTACCCCTTG 57.581 37.500 0.00 0.00 0.00 3.61
109 110 5.333566 AGTCTTCCAATTTTACCCCTTGA 57.666 39.130 0.00 0.00 0.00 3.02
110 111 5.711698 AGTCTTCCAATTTTACCCCTTGAA 58.288 37.500 0.00 0.00 0.00 2.69
111 112 5.538813 AGTCTTCCAATTTTACCCCTTGAAC 59.461 40.000 0.00 0.00 0.00 3.18
112 113 5.303333 GTCTTCCAATTTTACCCCTTGAACA 59.697 40.000 0.00 0.00 0.00 3.18
113 114 5.900123 TCTTCCAATTTTACCCCTTGAACAA 59.100 36.000 0.00 0.00 0.00 2.83
114 115 6.384305 TCTTCCAATTTTACCCCTTGAACAAA 59.616 34.615 0.00 0.00 0.00 2.83
115 116 6.561519 TCCAATTTTACCCCTTGAACAAAA 57.438 33.333 0.00 0.00 0.00 2.44
116 117 7.142995 TCCAATTTTACCCCTTGAACAAAAT 57.857 32.000 0.00 0.00 31.84 1.82
117 118 8.263854 TCCAATTTTACCCCTTGAACAAAATA 57.736 30.769 0.00 0.00 30.70 1.40
118 119 8.885346 TCCAATTTTACCCCTTGAACAAAATAT 58.115 29.630 0.00 0.00 30.70 1.28
123 124 8.584063 TTTACCCCTTGAACAAAATATACTCC 57.416 34.615 0.00 0.00 0.00 3.85
124 125 6.402981 ACCCCTTGAACAAAATATACTCCT 57.597 37.500 0.00 0.00 0.00 3.69
125 126 6.187682 ACCCCTTGAACAAAATATACTCCTG 58.812 40.000 0.00 0.00 0.00 3.86
126 127 6.011981 ACCCCTTGAACAAAATATACTCCTGA 60.012 38.462 0.00 0.00 0.00 3.86
127 128 7.062957 CCCCTTGAACAAAATATACTCCTGAT 58.937 38.462 0.00 0.00 0.00 2.90
128 129 7.561356 CCCCTTGAACAAAATATACTCCTGATT 59.439 37.037 0.00 0.00 0.00 2.57
129 130 8.624776 CCCTTGAACAAAATATACTCCTGATTC 58.375 37.037 0.00 0.00 0.00 2.52
130 131 9.401058 CCTTGAACAAAATATACTCCTGATTCT 57.599 33.333 0.00 0.00 0.00 2.40
139 140 9.995003 AAATATACTCCTGATTCTTTCTAGCAG 57.005 33.333 0.00 0.00 0.00 4.24
140 141 8.719645 ATATACTCCTGATTCTTTCTAGCAGT 57.280 34.615 0.00 0.00 0.00 4.40
141 142 5.083533 ACTCCTGATTCTTTCTAGCAGTG 57.916 43.478 0.00 0.00 0.00 3.66
142 143 4.530161 ACTCCTGATTCTTTCTAGCAGTGT 59.470 41.667 0.00 0.00 0.00 3.55
143 144 5.012561 ACTCCTGATTCTTTCTAGCAGTGTT 59.987 40.000 0.00 0.00 0.00 3.32
144 145 5.240891 TCCTGATTCTTTCTAGCAGTGTTG 58.759 41.667 0.00 0.00 0.00 3.33
145 146 4.394300 CCTGATTCTTTCTAGCAGTGTTGG 59.606 45.833 0.00 0.00 0.00 3.77
146 147 4.973168 TGATTCTTTCTAGCAGTGTTGGT 58.027 39.130 0.00 0.00 38.79 3.67
147 148 4.756642 TGATTCTTTCTAGCAGTGTTGGTG 59.243 41.667 0.00 0.00 36.27 4.17
148 149 3.126001 TCTTTCTAGCAGTGTTGGTGG 57.874 47.619 0.00 0.00 36.27 4.61
149 150 2.703536 TCTTTCTAGCAGTGTTGGTGGA 59.296 45.455 0.00 0.00 40.01 4.02
150 151 3.327757 TCTTTCTAGCAGTGTTGGTGGAT 59.672 43.478 0.00 0.00 41.12 3.41
151 152 3.334583 TTCTAGCAGTGTTGGTGGATC 57.665 47.619 0.00 0.00 41.12 3.36
152 153 2.540383 TCTAGCAGTGTTGGTGGATCT 58.460 47.619 0.00 0.00 37.38 2.75
153 154 3.708451 TCTAGCAGTGTTGGTGGATCTA 58.292 45.455 0.00 0.00 37.38 1.98
154 155 3.701542 TCTAGCAGTGTTGGTGGATCTAG 59.298 47.826 0.00 0.00 37.38 2.43
155 156 2.260822 AGCAGTGTTGGTGGATCTAGT 58.739 47.619 0.00 0.00 32.86 2.57
156 157 2.234908 AGCAGTGTTGGTGGATCTAGTC 59.765 50.000 0.00 0.00 32.86 2.59
169 170 4.942852 GGATCTAGTCCATTGAGTGACTG 58.057 47.826 0.00 0.00 46.96 3.51
170 171 4.202202 GGATCTAGTCCATTGAGTGACTGG 60.202 50.000 0.00 0.00 46.96 4.00
171 172 4.047627 TCTAGTCCATTGAGTGACTGGA 57.952 45.455 0.00 2.15 36.73 3.86
172 173 4.416516 TCTAGTCCATTGAGTGACTGGAA 58.583 43.478 0.00 0.00 40.61 3.53
173 174 4.838423 TCTAGTCCATTGAGTGACTGGAAA 59.162 41.667 0.00 0.00 40.61 3.13
174 175 4.647564 AGTCCATTGAGTGACTGGAAAT 57.352 40.909 0.00 0.00 40.61 2.17
175 176 4.330250 AGTCCATTGAGTGACTGGAAATG 58.670 43.478 0.00 0.00 40.61 2.32
176 177 3.441572 GTCCATTGAGTGACTGGAAATGG 59.558 47.826 18.38 18.38 45.68 3.16
177 178 3.689347 CCATTGAGTGACTGGAAATGGA 58.311 45.455 19.17 0.00 46.74 3.41
178 179 3.441572 CCATTGAGTGACTGGAAATGGAC 59.558 47.826 19.17 0.00 46.74 4.02
179 180 2.455674 TGAGTGACTGGAAATGGACG 57.544 50.000 0.00 0.00 0.00 4.79
180 181 1.001974 TGAGTGACTGGAAATGGACGG 59.998 52.381 0.00 0.00 0.00 4.79
181 182 0.321653 AGTGACTGGAAATGGACGGC 60.322 55.000 0.00 0.00 0.00 5.68
182 183 0.321653 GTGACTGGAAATGGACGGCT 60.322 55.000 0.00 0.00 0.00 5.52
183 184 0.036388 TGACTGGAAATGGACGGCTC 60.036 55.000 0.00 0.00 0.00 4.70
184 185 0.036388 GACTGGAAATGGACGGCTCA 60.036 55.000 0.00 0.00 0.00 4.26
185 186 0.620556 ACTGGAAATGGACGGCTCAT 59.379 50.000 0.00 0.00 0.00 2.90
186 187 1.837439 ACTGGAAATGGACGGCTCATA 59.163 47.619 0.00 0.00 0.00 2.15
187 188 2.439507 ACTGGAAATGGACGGCTCATAT 59.560 45.455 0.00 0.00 0.00 1.78
188 189 3.117888 ACTGGAAATGGACGGCTCATATT 60.118 43.478 0.00 0.00 0.00 1.28
189 190 4.102524 ACTGGAAATGGACGGCTCATATTA 59.897 41.667 0.00 0.00 0.00 0.98
190 191 5.221925 ACTGGAAATGGACGGCTCATATTAT 60.222 40.000 0.00 0.00 0.00 1.28
191 192 5.630121 TGGAAATGGACGGCTCATATTATT 58.370 37.500 0.00 0.00 0.00 1.40
192 193 6.068010 TGGAAATGGACGGCTCATATTATTT 58.932 36.000 0.00 0.00 0.00 1.40
193 194 6.549364 TGGAAATGGACGGCTCATATTATTTT 59.451 34.615 0.00 0.00 0.00 1.82
194 195 6.863126 GGAAATGGACGGCTCATATTATTTTG 59.137 38.462 0.00 0.00 0.00 2.44
195 196 7.255451 GGAAATGGACGGCTCATATTATTTTGA 60.255 37.037 0.00 0.00 0.00 2.69
196 197 6.560253 ATGGACGGCTCATATTATTTTGAC 57.440 37.500 0.00 0.00 0.00 3.18
197 198 4.509970 TGGACGGCTCATATTATTTTGACG 59.490 41.667 0.00 0.00 0.00 4.35
198 199 4.510340 GGACGGCTCATATTATTTTGACGT 59.490 41.667 0.00 0.00 30.32 4.34
199 200 5.693104 GGACGGCTCATATTATTTTGACGTA 59.307 40.000 0.00 0.00 28.57 3.57
200 201 6.346359 GGACGGCTCATATTATTTTGACGTAC 60.346 42.308 0.00 0.00 28.57 3.67
201 202 5.464389 ACGGCTCATATTATTTTGACGTACC 59.536 40.000 0.00 0.00 0.00 3.34
202 203 5.464057 CGGCTCATATTATTTTGACGTACCA 59.536 40.000 0.00 0.00 0.00 3.25
218 219 6.814644 TGACGTACCATAAAATTCTCGATGTT 59.185 34.615 0.00 0.00 0.00 2.71
254 264 3.337694 AACCCATGGCATCACAATTTG 57.662 42.857 6.09 0.00 0.00 2.32
264 274 3.264104 CATCACAATTTGGAATGGTGGC 58.736 45.455 8.01 0.00 0.00 5.01
289 299 9.517361 GCGAAACACAATCGAATTTAGATATAG 57.483 33.333 0.00 0.00 42.76 1.31
297 307 5.161358 TCGAATTTAGATATAGCTGGTGCG 58.839 41.667 0.00 0.00 45.42 5.34
298 308 5.048294 TCGAATTTAGATATAGCTGGTGCGA 60.048 40.000 0.00 0.00 45.42 5.10
332 342 2.434884 GCAGCTTACGCAGGCTCA 60.435 61.111 0.00 0.00 39.10 4.26
341 351 4.840005 GCAGGCTCAGCGGTACCC 62.840 72.222 6.25 0.00 0.00 3.69
353 363 1.153706 GGTACCCATGACGTCACCG 60.154 63.158 22.71 14.99 40.83 4.94
380 390 2.373169 ACATGAGCAACCTTCCTCTCAA 59.627 45.455 0.00 0.00 38.81 3.02
391 401 6.253946 ACCTTCCTCTCAAGAGAAGAAAAA 57.746 37.500 8.62 0.00 44.74 1.94
401 411 5.178252 TCAAGAGAAGAAAAAGACATGAGCG 59.822 40.000 0.00 0.00 0.00 5.03
403 413 4.688413 AGAGAAGAAAAAGACATGAGCGAC 59.312 41.667 0.00 0.00 0.00 5.19
437 447 2.787994 CATGTATCCCATGCCTTCCTC 58.212 52.381 0.00 0.00 44.21 3.71
438 448 1.140312 TGTATCCCATGCCTTCCTCC 58.860 55.000 0.00 0.00 0.00 4.30
444 454 0.693767 CCATGCCTTCCTCCCTCTCT 60.694 60.000 0.00 0.00 0.00 3.10
449 459 2.248686 TGCCTTCCTCCCTCTCTATTCT 59.751 50.000 0.00 0.00 0.00 2.40
451 461 2.632512 CCTTCCTCCCTCTCTATTCTGC 59.367 54.545 0.00 0.00 0.00 4.26
512 526 9.920133 TTGTTTGTTTTTATCATAGCATTAGCA 57.080 25.926 0.00 0.00 45.49 3.49
524 538 9.948964 ATCATAGCATTAGCATGTATAGAACAA 57.051 29.630 0.00 0.00 45.49 2.83
558 572 8.356657 CACAGACAATTTTGGAAAATACAGGTA 58.643 33.333 0.00 0.00 37.62 3.08
578 592 4.406003 GGTAGAGTAGGTGAACATGTGGAT 59.594 45.833 0.00 0.00 0.00 3.41
612 626 9.787435 AGAATCCTCTTGAGTAGTACACTATAG 57.213 37.037 2.52 0.00 37.72 1.31
693 733 8.469200 CAAAGTTAATCAATGGGCTCAAGAATA 58.531 33.333 0.00 0.00 0.00 1.75
694 734 7.573968 AGTTAATCAATGGGCTCAAGAATAC 57.426 36.000 0.00 0.00 0.00 1.89
695 735 7.349598 AGTTAATCAATGGGCTCAAGAATACT 58.650 34.615 0.00 0.00 0.00 2.12
696 736 8.494433 AGTTAATCAATGGGCTCAAGAATACTA 58.506 33.333 0.00 0.00 0.00 1.82
697 737 8.560374 GTTAATCAATGGGCTCAAGAATACTAC 58.440 37.037 0.00 0.00 0.00 2.73
698 738 5.957771 TCAATGGGCTCAAGAATACTACT 57.042 39.130 0.00 0.00 0.00 2.57
699 739 5.918608 TCAATGGGCTCAAGAATACTACTC 58.081 41.667 0.00 0.00 0.00 2.59
700 740 5.663106 TCAATGGGCTCAAGAATACTACTCT 59.337 40.000 0.00 0.00 0.00 3.24
701 741 5.543507 ATGGGCTCAAGAATACTACTCTG 57.456 43.478 0.00 0.00 0.00 3.35
702 742 4.353777 TGGGCTCAAGAATACTACTCTGT 58.646 43.478 0.00 0.00 0.00 3.41
703 743 4.402793 TGGGCTCAAGAATACTACTCTGTC 59.597 45.833 0.00 0.00 0.00 3.51
704 744 4.647399 GGGCTCAAGAATACTACTCTGTCT 59.353 45.833 0.00 0.00 0.00 3.41
705 745 5.221165 GGGCTCAAGAATACTACTCTGTCTC 60.221 48.000 0.00 0.00 0.00 3.36
706 746 5.221165 GGCTCAAGAATACTACTCTGTCTCC 60.221 48.000 0.00 0.00 0.00 3.71
707 747 5.504994 GCTCAAGAATACTACTCTGTCTCCG 60.505 48.000 0.00 0.00 0.00 4.63
719 760 1.737008 GTCTCCGAGTTTCACCGGC 60.737 63.158 0.00 0.00 44.96 6.13
720 761 2.809601 CTCCGAGTTTCACCGGCG 60.810 66.667 0.00 0.00 44.96 6.46
727 768 2.660900 CGAGTTTCACCGGCGTAAAAAG 60.661 50.000 6.01 0.00 0.00 2.27
728 769 2.288729 GAGTTTCACCGGCGTAAAAAGT 59.711 45.455 6.01 5.69 0.00 2.66
730 771 2.243602 TTCACCGGCGTAAAAAGTCT 57.756 45.000 6.01 0.00 0.00 3.24
734 776 0.437295 CCGGCGTAAAAAGTCTCACG 59.563 55.000 6.01 0.00 37.45 4.35
741 783 5.388164 GGCGTAAAAAGTCTCACGAGTTAAG 60.388 44.000 0.00 0.00 36.53 1.85
770 812 0.310854 GCGGTCTTGAAAACCACAGG 59.689 55.000 0.00 0.00 36.53 4.00
791 833 3.426159 GGGTAATCATGTCACACAAAGCG 60.426 47.826 0.00 0.00 0.00 4.68
797 839 2.594303 TCACACAAAGCGGCCTGG 60.594 61.111 0.00 0.00 0.00 4.45
810 852 0.837940 GGCCTGGGAGTAAACTAGGG 59.162 60.000 0.00 0.00 0.00 3.53
853 895 0.661020 AAGCCGTCTTGGAAAACACG 59.339 50.000 0.00 0.00 42.00 4.49
857 899 0.234884 CGTCTTGGAAAACACGCTCC 59.765 55.000 0.00 0.00 0.00 4.70
872 914 2.677875 TCCGCTCTGCTCTGCTCA 60.678 61.111 0.00 0.00 0.00 4.26
924 966 4.034858 CCAGCCGCAAGAGCATATATATTG 59.965 45.833 0.00 0.00 42.27 1.90
930 972 2.826428 AGAGCATATATATTGCGGGCG 58.174 47.619 11.64 0.00 44.82 6.13
973 1015 1.544691 ACTTGGTAGAGGTGTAGCACG 59.455 52.381 0.00 0.00 34.83 5.34
976 1018 0.098376 GGTAGAGGTGTAGCACGACG 59.902 60.000 0.00 0.00 34.83 5.12
1098 1140 2.179517 CTGGACGAGCAGGACGAC 59.820 66.667 0.00 0.00 34.70 4.34
1104 1146 2.024871 GAGCAGGACGACGATCCG 59.975 66.667 0.00 3.41 44.22 4.18
1196 1247 3.195698 GGACGACAATCCGCCTGC 61.196 66.667 0.00 0.00 0.00 4.85
1275 1380 4.038080 CTTCCGTTGTTGCCGCCC 62.038 66.667 0.00 0.00 0.00 6.13
1306 1411 4.148825 AGGAGTCCGATGCGCCAC 62.149 66.667 4.18 0.00 0.00 5.01
1336 1444 2.684294 TACCGGGTTCCATGCCGA 60.684 61.111 4.31 0.00 0.00 5.54
1337 1445 2.040009 CTACCGGGTTCCATGCCGAT 62.040 60.000 4.31 0.00 0.00 4.18
1338 1446 2.318519 TACCGGGTTCCATGCCGATG 62.319 60.000 4.31 0.00 0.00 3.84
1339 1447 3.585990 CGGGTTCCATGCCGATGC 61.586 66.667 3.65 0.00 38.26 3.91
1340 1448 3.219198 GGGTTCCATGCCGATGCC 61.219 66.667 0.00 0.00 36.33 4.40
1341 1449 3.585990 GGTTCCATGCCGATGCCG 61.586 66.667 0.00 0.00 36.33 5.69
1342 1450 2.824041 GTTCCATGCCGATGCCGT 60.824 61.111 0.00 0.00 36.33 5.68
1343 1451 2.045438 TTCCATGCCGATGCCGTT 60.045 55.556 0.00 0.00 36.33 4.44
1784 1892 3.119919 GCACTCTTCTTTCCTTGCATCTG 60.120 47.826 0.00 0.00 0.00 2.90
1799 1907 3.126858 TGCATCTGTTTCGCTGGTAAATC 59.873 43.478 0.00 0.00 0.00 2.17
1819 1927 0.536233 ATGCGTGCACAAGGTACCAA 60.536 50.000 18.64 0.00 0.00 3.67
1837 1945 2.157738 CAACTGGGCTTCTCTTCCAAG 58.842 52.381 0.00 0.00 0.00 3.61
1845 1953 4.375747 GGCTTCTCTTCCAAGCAAATGGA 61.376 47.826 6.74 2.11 46.94 3.41
1889 1998 4.216257 ACAGGATTGATGTTTTTGGTCGAG 59.784 41.667 0.00 0.00 0.00 4.04
1926 2035 3.869246 CACCGTTGGTCAGTATGGTATTC 59.131 47.826 0.00 0.00 36.16 1.75
2037 2146 2.772287 CTCAGAAGGGGTGTGAGTTTC 58.228 52.381 0.00 0.00 41.66 2.78
2152 2261 7.762615 CACAAAGTCAGGCAAATCATATGAATT 59.237 33.333 9.99 4.66 30.28 2.17
2172 2281 6.538742 TGAATTAAGTCAGGCGAATCTAAAGG 59.461 38.462 0.56 0.00 0.00 3.11
2186 2295 7.484959 GCGAATCTAAAGGAAACATGGTAAAAG 59.515 37.037 0.00 0.00 0.00 2.27
2228 2371 8.974060 ATTAAAACTAATCCAAGCTATTCCGA 57.026 30.769 0.00 0.00 0.00 4.55
2247 2390 6.911250 TCCGATTATTCAGAGCTGGTATTA 57.089 37.500 0.00 0.00 0.00 0.98
2249 2392 6.071334 TCCGATTATTCAGAGCTGGTATTAGG 60.071 42.308 0.00 0.22 0.00 2.69
2250 2393 6.295349 CCGATTATTCAGAGCTGGTATTAGGT 60.295 42.308 0.00 0.00 0.00 3.08
2251 2394 7.093902 CCGATTATTCAGAGCTGGTATTAGGTA 60.094 40.741 0.00 0.00 0.00 3.08
2261 2404 7.720515 AGAGCTGGTATTAGGTAGTACTAACTG 59.279 40.741 27.42 11.87 35.90 3.16
2282 2425 5.163416 ACTGGCTAGCTGTGTTTTCATTTTT 60.163 36.000 15.72 0.00 0.00 1.94
2384 2527 0.980423 AGTGGGACCAAGAAGAGCTC 59.020 55.000 5.27 5.27 0.00 4.09
2407 2550 1.134965 CAACTTCTCAGGAGGGCTACG 60.135 57.143 0.00 0.00 0.00 3.51
2484 2627 1.722034 TCAGGAACAGAGAGTTGGCT 58.278 50.000 0.00 0.00 41.51 4.75
2521 2664 4.106029 ACTGATAACACGTGTCGCTAAT 57.894 40.909 23.61 7.67 0.00 1.73
2598 2741 2.549754 CAGTGCTGTGACTTAACCCTTG 59.450 50.000 0.00 0.00 0.00 3.61
2613 2756 4.724279 ACCCTTGTCATTTTACTCAGGT 57.276 40.909 0.00 0.00 0.00 4.00
2788 2931 0.036732 TGGTGCGCTTTCTGAGGAAT 59.963 50.000 9.73 0.00 0.00 3.01
2793 2936 1.806542 GCGCTTTCTGAGGAATCAACA 59.193 47.619 0.00 0.00 0.00 3.33
2799 2942 6.456181 CGCTTTCTGAGGAATCAACAAGATAC 60.456 42.308 0.00 0.00 35.39 2.24
2822 2965 5.408604 ACCAGAGCTACTTTTATTGACGTTG 59.591 40.000 0.00 0.00 0.00 4.10
2823 2966 5.316770 CAGAGCTACTTTTATTGACGTTGC 58.683 41.667 0.00 0.00 0.00 4.17
2859 3002 2.291282 TGGCGACAATAGACCCCAAAAT 60.291 45.455 0.00 0.00 37.44 1.82
2870 3013 5.074746 AGACCCCAAAATCTTTGGTAAGT 57.925 39.130 15.24 10.21 37.88 2.24
2904 3047 7.425224 TTTTGGTCCCTTTTAAATGAACAGA 57.575 32.000 2.77 0.00 0.00 3.41
2909 3052 5.405935 CCCTTTTAAATGAACAGAAGGGG 57.594 43.478 10.44 0.00 46.11 4.79
2913 3056 7.419634 CCCTTTTAAATGAACAGAAGGGGAAAA 60.420 37.037 10.44 0.00 46.11 2.29
2915 3058 9.559732 CTTTTAAATGAACAGAAGGGGAAAAAT 57.440 29.630 0.00 0.00 0.00 1.82
3086 3229 3.187227 CCACCAAACAGAGAGAATGAACG 59.813 47.826 0.00 0.00 0.00 3.95
3091 3234 6.263168 ACCAAACAGAGAGAATGAACGAAATT 59.737 34.615 0.00 0.00 0.00 1.82
3097 3240 7.819415 ACAGAGAGAATGAACGAAATTATCACA 59.181 33.333 0.00 0.00 29.57 3.58
3158 3301 6.541278 TGCCTAGATCAAGATTGTGAATTCAG 59.459 38.462 8.80 0.00 0.00 3.02
3159 3302 6.017275 GCCTAGATCAAGATTGTGAATTCAGG 60.017 42.308 8.80 2.37 0.00 3.86
3166 3309 5.121380 AGATTGTGAATTCAGGCCTACAT 57.879 39.130 3.98 0.00 0.00 2.29
3182 3325 4.740934 GCCTACATCCCACAGAGATTGTAC 60.741 50.000 0.00 0.00 38.16 2.90
3187 3330 3.031736 TCCCACAGAGATTGTACCTAGC 58.968 50.000 0.00 0.00 38.16 3.42
3349 3492 2.225491 TCGGTAATGAAAGTGCTTGCAC 59.775 45.455 16.98 16.98 29.43 4.57
3361 3504 4.836825 AGTGCTTGCACAGTCATAACTAT 58.163 39.130 24.82 0.00 33.25 2.12
3391 3536 6.352565 CCCTGTCTATTTGTTCTTCATCCTCT 60.353 42.308 0.00 0.00 0.00 3.69
3536 3685 4.130118 AGCTCCATAAGTAATTGCCTTCG 58.870 43.478 0.00 0.00 0.00 3.79
3716 3865 9.623000 GACATTTTGGGTAAATATAGTACAGGT 57.377 33.333 0.00 0.00 34.69 4.00
3736 3885 5.647658 CAGGTCATTATACAATGTGTGTGGT 59.352 40.000 0.00 0.00 41.89 4.16
3752 3901 6.210385 TGTGTGTGGTAAATAAATTGCTGGAT 59.790 34.615 0.00 0.00 0.00 3.41
3795 3949 9.321562 GATAAATGAAATCGTTAAGGTACCTCA 57.678 33.333 16.64 6.00 0.00 3.86
3869 4023 5.856126 TTACCGACATCAACAACTCAATC 57.144 39.130 0.00 0.00 0.00 2.67
4047 4202 2.590007 CGCCCCTCATACAGCAGC 60.590 66.667 0.00 0.00 0.00 5.25
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.655810 GACTGCAGGCTGGACTCGG 62.656 68.421 19.93 6.88 0.00 4.63
1 2 2.125753 GACTGCAGGCTGGACTCG 60.126 66.667 19.93 4.29 0.00 4.18
2 3 2.267324 GGACTGCAGGCTGGACTC 59.733 66.667 21.42 11.67 0.00 3.36
3 4 3.325753 GGGACTGCAGGCTGGACT 61.326 66.667 21.42 1.63 0.00 3.85
4 5 4.767255 CGGGACTGCAGGCTGGAC 62.767 72.222 21.42 1.52 0.00 4.02
6 7 4.767255 GACGGGACTGCAGGCTGG 62.767 72.222 21.42 14.14 0.00 4.85
10 11 4.135153 CTCCGACGGGACTGCAGG 62.135 72.222 19.93 1.96 37.43 4.85
11 12 4.803426 GCTCCGACGGGACTGCAG 62.803 72.222 15.25 13.48 37.43 4.41
13 14 4.803426 CTGCTCCGACGGGACTGC 62.803 72.222 15.25 13.61 37.43 4.40
14 15 4.135153 CCTGCTCCGACGGGACTG 62.135 72.222 15.25 10.13 38.48 3.51
15 16 4.361971 TCCTGCTCCGACGGGACT 62.362 66.667 15.25 0.00 40.30 3.85
18 19 1.364171 CTTATCCTGCTCCGACGGG 59.636 63.158 15.25 6.01 37.44 5.28
19 20 1.107538 TCCTTATCCTGCTCCGACGG 61.108 60.000 7.84 7.84 0.00 4.79
20 21 0.744874 TTCCTTATCCTGCTCCGACG 59.255 55.000 0.00 0.00 0.00 5.12
21 22 1.539280 GCTTCCTTATCCTGCTCCGAC 60.539 57.143 0.00 0.00 0.00 4.79
22 23 0.753262 GCTTCCTTATCCTGCTCCGA 59.247 55.000 0.00 0.00 0.00 4.55
23 24 0.465705 TGCTTCCTTATCCTGCTCCG 59.534 55.000 0.00 0.00 0.00 4.63
24 25 1.210478 TGTGCTTCCTTATCCTGCTCC 59.790 52.381 0.00 0.00 0.00 4.70
25 26 2.284190 GTGTGCTTCCTTATCCTGCTC 58.716 52.381 0.00 0.00 0.00 4.26
26 27 1.406069 CGTGTGCTTCCTTATCCTGCT 60.406 52.381 0.00 0.00 0.00 4.24
27 28 1.009829 CGTGTGCTTCCTTATCCTGC 58.990 55.000 0.00 0.00 0.00 4.85
28 29 1.207089 TCCGTGTGCTTCCTTATCCTG 59.793 52.381 0.00 0.00 0.00 3.86
29 30 1.568504 TCCGTGTGCTTCCTTATCCT 58.431 50.000 0.00 0.00 0.00 3.24
30 31 2.622064 ATCCGTGTGCTTCCTTATCC 57.378 50.000 0.00 0.00 0.00 2.59
31 32 4.192317 AGAAATCCGTGTGCTTCCTTATC 58.808 43.478 0.00 0.00 0.00 1.75
32 33 4.192317 GAGAAATCCGTGTGCTTCCTTAT 58.808 43.478 0.00 0.00 0.00 1.73
33 34 3.007506 TGAGAAATCCGTGTGCTTCCTTA 59.992 43.478 0.00 0.00 0.00 2.69
34 35 2.224523 TGAGAAATCCGTGTGCTTCCTT 60.225 45.455 0.00 0.00 0.00 3.36
35 36 1.347707 TGAGAAATCCGTGTGCTTCCT 59.652 47.619 0.00 0.00 0.00 3.36
36 37 1.808411 TGAGAAATCCGTGTGCTTCC 58.192 50.000 0.00 0.00 0.00 3.46
37 38 3.751621 CATTGAGAAATCCGTGTGCTTC 58.248 45.455 0.00 0.00 0.00 3.86
38 39 2.095059 GCATTGAGAAATCCGTGTGCTT 60.095 45.455 0.00 0.00 0.00 3.91
39 40 1.470098 GCATTGAGAAATCCGTGTGCT 59.530 47.619 0.00 0.00 0.00 4.40
40 41 1.791555 CGCATTGAGAAATCCGTGTGC 60.792 52.381 0.00 0.00 0.00 4.57
41 42 1.464608 ACGCATTGAGAAATCCGTGTG 59.535 47.619 0.00 0.00 0.00 3.82
42 43 1.464608 CACGCATTGAGAAATCCGTGT 59.535 47.619 6.72 0.00 40.56 4.49
43 44 2.163826 CACGCATTGAGAAATCCGTG 57.836 50.000 1.01 1.01 39.75 4.94
44 45 1.808411 ACACGCATTGAGAAATCCGT 58.192 45.000 0.00 0.00 0.00 4.69
45 46 3.186909 TCTACACGCATTGAGAAATCCG 58.813 45.455 0.00 0.00 0.00 4.18
46 47 4.184629 ACTCTACACGCATTGAGAAATCC 58.815 43.478 5.24 0.00 0.00 3.01
47 48 5.786401 AACTCTACACGCATTGAGAAATC 57.214 39.130 5.24 0.00 0.00 2.17
48 49 6.017109 ACAAAACTCTACACGCATTGAGAAAT 60.017 34.615 5.24 0.00 0.00 2.17
49 50 5.295787 ACAAAACTCTACACGCATTGAGAAA 59.704 36.000 5.24 0.00 0.00 2.52
50 51 4.814234 ACAAAACTCTACACGCATTGAGAA 59.186 37.500 5.24 0.00 0.00 2.87
51 52 4.377021 ACAAAACTCTACACGCATTGAGA 58.623 39.130 5.24 0.00 0.00 3.27
52 53 4.732285 ACAAAACTCTACACGCATTGAG 57.268 40.909 0.00 0.00 0.00 3.02
53 54 5.493133 AAACAAAACTCTACACGCATTGA 57.507 34.783 0.00 0.00 0.00 2.57
54 55 6.567769 AAAAACAAAACTCTACACGCATTG 57.432 33.333 0.00 0.00 0.00 2.82
55 56 8.865590 AATAAAAACAAAACTCTACACGCATT 57.134 26.923 0.00 0.00 0.00 3.56
56 57 8.865590 AAATAAAAACAAAACTCTACACGCAT 57.134 26.923 0.00 0.00 0.00 4.73
57 58 8.587950 CAAAATAAAAACAAAACTCTACACGCA 58.412 29.630 0.00 0.00 0.00 5.24
58 59 8.588789 ACAAAATAAAAACAAAACTCTACACGC 58.411 29.630 0.00 0.00 0.00 5.34
78 79 9.772973 GGGTAAAATTGGAAGACTTTACAAAAT 57.227 29.630 9.43 1.83 40.42 1.82
79 80 8.205512 GGGGTAAAATTGGAAGACTTTACAAAA 58.794 33.333 9.43 0.00 40.42 2.44
80 81 7.565768 AGGGGTAAAATTGGAAGACTTTACAAA 59.434 33.333 9.43 0.00 40.42 2.83
81 82 7.070629 AGGGGTAAAATTGGAAGACTTTACAA 58.929 34.615 8.22 8.22 41.25 2.41
82 83 6.616577 AGGGGTAAAATTGGAAGACTTTACA 58.383 36.000 6.05 0.00 36.43 2.41
83 84 7.231925 TCAAGGGGTAAAATTGGAAGACTTTAC 59.768 37.037 0.00 0.00 34.79 2.01
84 85 7.299134 TCAAGGGGTAAAATTGGAAGACTTTA 58.701 34.615 0.00 0.00 0.00 1.85
85 86 6.140377 TCAAGGGGTAAAATTGGAAGACTTT 58.860 36.000 0.00 0.00 0.00 2.66
86 87 5.711698 TCAAGGGGTAAAATTGGAAGACTT 58.288 37.500 0.00 0.00 0.00 3.01
87 88 5.333566 TCAAGGGGTAAAATTGGAAGACT 57.666 39.130 0.00 0.00 0.00 3.24
88 89 5.303333 TGTTCAAGGGGTAAAATTGGAAGAC 59.697 40.000 0.00 0.00 0.00 3.01
89 90 5.459505 TGTTCAAGGGGTAAAATTGGAAGA 58.540 37.500 0.00 0.00 0.00 2.87
90 91 5.799827 TGTTCAAGGGGTAAAATTGGAAG 57.200 39.130 0.00 0.00 0.00 3.46
91 92 6.561519 TTTGTTCAAGGGGTAAAATTGGAA 57.438 33.333 0.00 0.00 0.00 3.53
92 93 6.561519 TTTTGTTCAAGGGGTAAAATTGGA 57.438 33.333 0.00 0.00 0.00 3.53
97 98 9.027202 GGAGTATATTTTGTTCAAGGGGTAAAA 57.973 33.333 0.00 0.00 0.00 1.52
98 99 8.395605 AGGAGTATATTTTGTTCAAGGGGTAAA 58.604 33.333 0.00 0.00 0.00 2.01
99 100 7.832187 CAGGAGTATATTTTGTTCAAGGGGTAA 59.168 37.037 0.00 0.00 0.00 2.85
100 101 7.183112 TCAGGAGTATATTTTGTTCAAGGGGTA 59.817 37.037 0.00 0.00 0.00 3.69
101 102 6.011981 TCAGGAGTATATTTTGTTCAAGGGGT 60.012 38.462 0.00 0.00 0.00 4.95
102 103 6.423182 TCAGGAGTATATTTTGTTCAAGGGG 58.577 40.000 0.00 0.00 0.00 4.79
103 104 8.525290 AATCAGGAGTATATTTTGTTCAAGGG 57.475 34.615 0.00 0.00 0.00 3.95
104 105 9.401058 AGAATCAGGAGTATATTTTGTTCAAGG 57.599 33.333 0.00 0.00 0.00 3.61
113 114 9.995003 CTGCTAGAAAGAATCAGGAGTATATTT 57.005 33.333 0.00 0.00 0.00 1.40
114 115 9.153479 ACTGCTAGAAAGAATCAGGAGTATATT 57.847 33.333 0.00 0.00 36.69 1.28
115 116 8.584157 CACTGCTAGAAAGAATCAGGAGTATAT 58.416 37.037 0.00 0.00 36.49 0.86
116 117 7.561722 ACACTGCTAGAAAGAATCAGGAGTATA 59.438 37.037 0.00 0.00 36.49 1.47
117 118 6.382570 ACACTGCTAGAAAGAATCAGGAGTAT 59.617 38.462 0.00 0.00 36.49 2.12
118 119 5.717178 ACACTGCTAGAAAGAATCAGGAGTA 59.283 40.000 0.00 0.00 36.49 2.59
119 120 4.530161 ACACTGCTAGAAAGAATCAGGAGT 59.470 41.667 0.00 0.00 37.90 3.85
120 121 5.083533 ACACTGCTAGAAAGAATCAGGAG 57.916 43.478 0.00 0.00 33.79 3.69
121 122 5.240891 CAACACTGCTAGAAAGAATCAGGA 58.759 41.667 0.00 0.00 0.00 3.86
122 123 4.394300 CCAACACTGCTAGAAAGAATCAGG 59.606 45.833 0.00 0.00 0.00 3.86
123 124 4.999950 ACCAACACTGCTAGAAAGAATCAG 59.000 41.667 0.00 0.00 0.00 2.90
124 125 4.756642 CACCAACACTGCTAGAAAGAATCA 59.243 41.667 0.00 0.00 0.00 2.57
125 126 4.154918 CCACCAACACTGCTAGAAAGAATC 59.845 45.833 0.00 0.00 0.00 2.52
126 127 4.074970 CCACCAACACTGCTAGAAAGAAT 58.925 43.478 0.00 0.00 0.00 2.40
127 128 3.135712 TCCACCAACACTGCTAGAAAGAA 59.864 43.478 0.00 0.00 0.00 2.52
128 129 2.703536 TCCACCAACACTGCTAGAAAGA 59.296 45.455 0.00 0.00 0.00 2.52
129 130 3.126001 TCCACCAACACTGCTAGAAAG 57.874 47.619 0.00 0.00 0.00 2.62
130 131 3.327757 AGATCCACCAACACTGCTAGAAA 59.672 43.478 0.00 0.00 0.00 2.52
131 132 2.906389 AGATCCACCAACACTGCTAGAA 59.094 45.455 0.00 0.00 0.00 2.10
132 133 2.540383 AGATCCACCAACACTGCTAGA 58.460 47.619 0.00 0.00 0.00 2.43
133 134 3.449018 ACTAGATCCACCAACACTGCTAG 59.551 47.826 0.00 0.00 0.00 3.42
134 135 3.441101 ACTAGATCCACCAACACTGCTA 58.559 45.455 0.00 0.00 0.00 3.49
135 136 2.234908 GACTAGATCCACCAACACTGCT 59.765 50.000 0.00 0.00 0.00 4.24
136 137 2.622436 GACTAGATCCACCAACACTGC 58.378 52.381 0.00 0.00 0.00 4.40
148 149 4.646945 TCCAGTCACTCAATGGACTAGATC 59.353 45.833 0.00 0.00 42.22 2.75
149 150 4.614475 TCCAGTCACTCAATGGACTAGAT 58.386 43.478 0.00 0.00 42.22 1.98
150 151 4.047627 TCCAGTCACTCAATGGACTAGA 57.952 45.455 0.00 0.00 42.22 2.43
151 152 4.808414 TTCCAGTCACTCAATGGACTAG 57.192 45.455 0.00 0.00 42.72 2.57
152 153 5.491070 CATTTCCAGTCACTCAATGGACTA 58.509 41.667 0.00 0.00 42.72 2.59
153 154 4.330250 CATTTCCAGTCACTCAATGGACT 58.670 43.478 0.00 0.00 42.72 3.85
154 155 3.441572 CCATTTCCAGTCACTCAATGGAC 59.558 47.826 12.19 0.00 44.63 4.02
155 156 3.330405 TCCATTTCCAGTCACTCAATGGA 59.670 43.478 14.88 14.88 46.94 3.41
156 157 3.441572 GTCCATTTCCAGTCACTCAATGG 59.558 47.826 11.60 11.60 43.64 3.16
157 158 3.125829 CGTCCATTTCCAGTCACTCAATG 59.874 47.826 0.00 0.00 0.00 2.82
158 159 3.338249 CGTCCATTTCCAGTCACTCAAT 58.662 45.455 0.00 0.00 0.00 2.57
159 160 2.549992 CCGTCCATTTCCAGTCACTCAA 60.550 50.000 0.00 0.00 0.00 3.02
160 161 1.001974 CCGTCCATTTCCAGTCACTCA 59.998 52.381 0.00 0.00 0.00 3.41
161 162 1.726853 CCGTCCATTTCCAGTCACTC 58.273 55.000 0.00 0.00 0.00 3.51
162 163 0.321653 GCCGTCCATTTCCAGTCACT 60.322 55.000 0.00 0.00 0.00 3.41
163 164 0.321653 AGCCGTCCATTTCCAGTCAC 60.322 55.000 0.00 0.00 0.00 3.67
164 165 0.036388 GAGCCGTCCATTTCCAGTCA 60.036 55.000 0.00 0.00 0.00 3.41
165 166 0.036388 TGAGCCGTCCATTTCCAGTC 60.036 55.000 0.00 0.00 0.00 3.51
166 167 0.620556 ATGAGCCGTCCATTTCCAGT 59.379 50.000 0.00 0.00 0.00 4.00
167 168 2.620251 TATGAGCCGTCCATTTCCAG 57.380 50.000 0.00 0.00 0.00 3.86
168 169 3.576078 AATATGAGCCGTCCATTTCCA 57.424 42.857 0.00 0.00 0.00 3.53
169 170 6.575162 AAATAATATGAGCCGTCCATTTCC 57.425 37.500 0.00 0.00 0.00 3.13
170 171 7.591426 GTCAAAATAATATGAGCCGTCCATTTC 59.409 37.037 0.00 0.00 0.00 2.17
171 172 7.425606 GTCAAAATAATATGAGCCGTCCATTT 58.574 34.615 0.00 0.00 0.00 2.32
172 173 6.293407 CGTCAAAATAATATGAGCCGTCCATT 60.293 38.462 0.00 0.00 0.00 3.16
173 174 5.179368 CGTCAAAATAATATGAGCCGTCCAT 59.821 40.000 0.00 0.00 0.00 3.41
174 175 4.509970 CGTCAAAATAATATGAGCCGTCCA 59.490 41.667 0.00 0.00 0.00 4.02
175 176 4.510340 ACGTCAAAATAATATGAGCCGTCC 59.490 41.667 0.00 0.00 0.00 4.79
176 177 5.652744 ACGTCAAAATAATATGAGCCGTC 57.347 39.130 0.00 0.00 0.00 4.79
177 178 5.464389 GGTACGTCAAAATAATATGAGCCGT 59.536 40.000 0.00 0.00 34.20 5.68
178 179 5.464057 TGGTACGTCAAAATAATATGAGCCG 59.536 40.000 0.00 0.00 0.00 5.52
179 180 6.854496 TGGTACGTCAAAATAATATGAGCC 57.146 37.500 0.00 0.00 0.00 4.70
187 188 9.976255 CGAGAATTTTATGGTACGTCAAAATAA 57.024 29.630 0.00 0.00 31.97 1.40
188 189 9.368674 TCGAGAATTTTATGGTACGTCAAAATA 57.631 29.630 0.00 0.00 31.97 1.40
189 190 8.259049 TCGAGAATTTTATGGTACGTCAAAAT 57.741 30.769 0.00 0.00 33.24 1.82
190 191 7.655236 TCGAGAATTTTATGGTACGTCAAAA 57.345 32.000 0.00 0.00 0.00 2.44
191 192 7.332430 ACATCGAGAATTTTATGGTACGTCAAA 59.668 33.333 0.00 0.00 0.00 2.69
192 193 6.814644 ACATCGAGAATTTTATGGTACGTCAA 59.185 34.615 0.00 0.00 0.00 3.18
193 194 6.334989 ACATCGAGAATTTTATGGTACGTCA 58.665 36.000 0.00 0.00 0.00 4.35
194 195 6.823678 ACATCGAGAATTTTATGGTACGTC 57.176 37.500 0.00 0.00 0.00 4.34
195 196 7.605410 AAACATCGAGAATTTTATGGTACGT 57.395 32.000 0.00 0.00 0.00 3.57
196 197 8.889849 AAAAACATCGAGAATTTTATGGTACG 57.110 30.769 4.94 0.00 0.00 3.67
224 229 0.667184 GCCATGGGTTTTGCTGAACG 60.667 55.000 15.13 0.00 0.00 3.95
228 233 0.609151 TGATGCCATGGGTTTTGCTG 59.391 50.000 15.13 0.00 0.00 4.41
229 234 0.609662 GTGATGCCATGGGTTTTGCT 59.390 50.000 15.13 0.00 0.00 3.91
236 241 1.832366 TCCAAATTGTGATGCCATGGG 59.168 47.619 15.13 0.00 0.00 4.00
237 242 3.613494 TTCCAAATTGTGATGCCATGG 57.387 42.857 7.63 7.63 0.00 3.66
238 243 3.874543 CCATTCCAAATTGTGATGCCATG 59.125 43.478 0.00 0.00 0.00 3.66
254 264 0.671251 TTGTGTTTCGCCACCATTCC 59.329 50.000 0.00 0.00 34.35 3.01
264 274 9.517361 GCTATATCTAAATTCGATTGTGTTTCG 57.483 33.333 0.00 0.00 37.94 3.46
324 334 4.840005 GGGTACCGCTGAGCCTGC 62.840 72.222 5.65 0.00 40.86 4.85
353 363 1.063174 GAAGGTTGCTCATGTCATCGC 59.937 52.381 0.00 0.00 0.00 4.58
380 390 4.688413 GTCGCTCATGTCTTTTTCTTCTCT 59.312 41.667 0.00 0.00 0.00 3.10
391 401 1.078848 GCTTGGGTCGCTCATGTCT 60.079 57.895 0.00 0.00 0.00 3.41
401 411 2.629656 ATGTGCTTGCGCTTGGGTC 61.630 57.895 9.73 0.00 36.97 4.46
403 413 1.585267 TACATGTGCTTGCGCTTGGG 61.585 55.000 20.55 0.00 36.97 4.12
418 428 1.707427 GGAGGAAGGCATGGGATACAT 59.293 52.381 0.00 0.00 41.57 2.29
420 430 0.402121 GGGAGGAAGGCATGGGATAC 59.598 60.000 0.00 0.00 0.00 2.24
421 431 0.271927 AGGGAGGAAGGCATGGGATA 59.728 55.000 0.00 0.00 0.00 2.59
422 432 1.006631 AGGGAGGAAGGCATGGGAT 59.993 57.895 0.00 0.00 0.00 3.85
437 447 4.751767 ACAAGAAGCAGAATAGAGAGGG 57.248 45.455 0.00 0.00 0.00 4.30
438 448 8.553459 TTAAAACAAGAAGCAGAATAGAGAGG 57.447 34.615 0.00 0.00 0.00 3.69
501 515 9.224267 CCTTTGTTCTATACATGCTAATGCTAT 57.776 33.333 0.00 0.00 37.29 2.97
502 516 8.428852 TCCTTTGTTCTATACATGCTAATGCTA 58.571 33.333 0.00 0.00 37.29 3.49
504 518 7.227512 AGTCCTTTGTTCTATACATGCTAATGC 59.772 37.037 0.00 0.00 37.29 3.56
505 519 8.668510 AGTCCTTTGTTCTATACATGCTAATG 57.331 34.615 0.00 0.00 36.44 1.90
506 520 9.765795 GTAGTCCTTTGTTCTATACATGCTAAT 57.234 33.333 0.00 0.00 36.44 1.73
507 521 8.755028 TGTAGTCCTTTGTTCTATACATGCTAA 58.245 33.333 0.00 0.00 36.44 3.09
508 522 8.195436 GTGTAGTCCTTTGTTCTATACATGCTA 58.805 37.037 0.00 0.00 36.44 3.49
509 523 7.042335 GTGTAGTCCTTTGTTCTATACATGCT 58.958 38.462 0.00 0.00 36.44 3.79
510 524 6.816640 TGTGTAGTCCTTTGTTCTATACATGC 59.183 38.462 0.00 0.00 36.44 4.06
511 525 8.251026 TCTGTGTAGTCCTTTGTTCTATACATG 58.749 37.037 0.00 0.00 36.06 3.21
512 526 8.251721 GTCTGTGTAGTCCTTTGTTCTATACAT 58.748 37.037 0.00 0.00 36.06 2.29
513 527 7.231925 TGTCTGTGTAGTCCTTTGTTCTATACA 59.768 37.037 0.00 0.00 35.60 2.29
514 528 7.600065 TGTCTGTGTAGTCCTTTGTTCTATAC 58.400 38.462 0.00 0.00 0.00 1.47
515 529 7.770366 TGTCTGTGTAGTCCTTTGTTCTATA 57.230 36.000 0.00 0.00 0.00 1.31
516 530 6.665992 TGTCTGTGTAGTCCTTTGTTCTAT 57.334 37.500 0.00 0.00 0.00 1.98
517 531 6.474140 TTGTCTGTGTAGTCCTTTGTTCTA 57.526 37.500 0.00 0.00 0.00 2.10
518 532 5.353394 TTGTCTGTGTAGTCCTTTGTTCT 57.647 39.130 0.00 0.00 0.00 3.01
519 533 6.619801 AATTGTCTGTGTAGTCCTTTGTTC 57.380 37.500 0.00 0.00 0.00 3.18
520 534 7.257722 CAAAATTGTCTGTGTAGTCCTTTGTT 58.742 34.615 0.00 0.00 0.00 2.83
524 538 5.690865 TCCAAAATTGTCTGTGTAGTCCTT 58.309 37.500 0.00 0.00 0.00 3.36
558 572 3.198635 CCATCCACATGTTCACCTACTCT 59.801 47.826 0.00 0.00 0.00 3.24
600 614 7.640597 ACACATGCAGAACTATAGTGTACTA 57.359 36.000 6.06 0.00 37.01 1.82
601 615 6.531503 ACACATGCAGAACTATAGTGTACT 57.468 37.500 6.06 4.09 37.01 2.73
602 616 8.873215 AATACACATGCAGAACTATAGTGTAC 57.127 34.615 6.06 1.75 41.83 2.90
612 626 9.624697 TTCAAGAAAATAATACACATGCAGAAC 57.375 29.630 0.00 0.00 0.00 3.01
641 655 9.897744 GTATGGACATGTTACATTCCATTTATG 57.102 33.333 28.82 10.01 44.90 1.90
642 656 9.639563 TGTATGGACATGTTACATTCCATTTAT 57.360 29.630 28.82 17.79 44.90 1.40
697 737 1.401670 CGGTGAAACTCGGAGACAGAG 60.402 57.143 12.86 0.00 41.27 3.35
698 738 0.596577 CGGTGAAACTCGGAGACAGA 59.403 55.000 12.86 0.00 36.74 3.41
699 739 3.108521 CGGTGAAACTCGGAGACAG 57.891 57.895 12.86 0.00 36.74 3.51
706 746 0.860533 TTTTACGCCGGTGAAACTCG 59.139 50.000 24.59 8.06 36.74 4.18
707 747 2.288729 ACTTTTTACGCCGGTGAAACTC 59.711 45.455 24.59 0.00 36.74 3.01
719 760 5.174398 TGCTTAACTCGTGAGACTTTTTACG 59.826 40.000 3.44 0.00 37.85 3.18
720 761 6.520792 TGCTTAACTCGTGAGACTTTTTAC 57.479 37.500 3.44 0.00 35.39 2.01
727 768 1.721926 GTGCTGCTTAACTCGTGAGAC 59.278 52.381 3.44 0.00 35.39 3.36
728 769 1.336887 GGTGCTGCTTAACTCGTGAGA 60.337 52.381 3.44 0.00 39.12 3.27
730 771 0.391228 TGGTGCTGCTTAACTCGTGA 59.609 50.000 0.00 0.00 0.00 4.35
734 776 0.166814 CGCTTGGTGCTGCTTAACTC 59.833 55.000 0.00 0.00 40.11 3.01
753 795 2.067365 ACCCTGTGGTTTTCAAGACC 57.933 50.000 0.00 0.00 44.75 3.85
770 812 3.426159 CCGCTTTGTGTGACATGATTACC 60.426 47.826 0.00 0.00 0.00 2.85
791 833 0.837940 CCCTAGTTTACTCCCAGGCC 59.162 60.000 0.00 0.00 0.00 5.19
797 839 1.139256 GGAGCAGCCCTAGTTTACTCC 59.861 57.143 0.00 0.00 35.83 3.85
810 852 0.108424 CTGTGTAGGTGAGGAGCAGC 60.108 60.000 0.00 0.00 45.24 5.25
857 899 2.886604 GCTGAGCAGAGCAGAGCG 60.887 66.667 0.00 0.00 38.95 5.03
899 941 0.250209 ATATGCTCTTGCGGCTGGAG 60.250 55.000 14.90 14.90 43.34 3.86
909 951 3.198068 CGCCCGCAATATATATGCTCTT 58.802 45.455 14.05 0.00 41.64 2.85
973 1015 2.660802 CCCTGGTGGTGGTACGTC 59.339 66.667 0.00 0.00 0.00 4.34
976 1018 3.315949 TCGCCCTGGTGGTGGTAC 61.316 66.667 0.00 0.00 45.26 3.34
1029 1071 4.863925 GCGACGAGGAGGAGCAGC 62.864 72.222 0.00 0.00 0.00 5.25
1222 1273 3.827898 GTCCTCCTGCTCGTCCGG 61.828 72.222 0.00 0.00 0.00 5.14
1320 1425 3.407967 ATCGGCATGGAACCCGGT 61.408 61.111 0.00 0.00 44.45 5.28
1326 1431 2.045438 AACGGCATCGGCATGGAA 60.045 55.556 0.00 0.00 43.71 3.53
1407 1515 2.833582 GGATCGTCCTGCCTCGGA 60.834 66.667 0.00 0.00 32.53 4.55
1569 1677 1.078709 CGGTGGTGCTGTAGTTGATG 58.921 55.000 0.00 0.00 0.00 3.07
1799 1907 1.233950 TGGTACCTTGTGCACGCATG 61.234 55.000 14.36 3.12 0.00 4.06
1819 1927 0.037447 GCTTGGAAGAGAAGCCCAGT 59.963 55.000 0.00 0.00 40.03 4.00
1837 1945 0.322816 TGAGCTCCACCTCCATTTGC 60.323 55.000 12.15 0.00 0.00 3.68
1845 1953 1.298993 CTGCACATGAGCTCCACCT 59.701 57.895 16.24 0.00 34.99 4.00
1907 2016 3.550275 CGTGAATACCATACTGACCAACG 59.450 47.826 0.00 0.00 0.00 4.10
1926 2035 0.673437 ATCCCAAAAACTGCACCGTG 59.327 50.000 0.00 0.00 0.00 4.94
1998 2107 1.676967 CTGCCTTGGCCTCAACCTC 60.677 63.158 3.32 0.00 0.00 3.85
2106 2215 4.098349 TGTGCTCTGATGGGAATAAAATGC 59.902 41.667 0.00 0.00 0.00 3.56
2108 2217 6.438425 ACTTTGTGCTCTGATGGGAATAAAAT 59.562 34.615 0.00 0.00 0.00 1.82
2113 2222 3.245016 TGACTTTGTGCTCTGATGGGAAT 60.245 43.478 0.00 0.00 0.00 3.01
2116 2225 2.082231 CTGACTTTGTGCTCTGATGGG 58.918 52.381 0.00 0.00 0.00 4.00
2152 2261 5.670792 TTCCTTTAGATTCGCCTGACTTA 57.329 39.130 0.00 0.00 0.00 2.24
2228 2371 8.728596 ACTACCTAATACCAGCTCTGAATAAT 57.271 34.615 0.00 0.00 0.00 1.28
2247 2390 4.208746 CAGCTAGCCAGTTAGTACTACCT 58.791 47.826 12.13 0.00 31.96 3.08
2249 2392 4.398673 ACACAGCTAGCCAGTTAGTACTAC 59.601 45.833 12.13 0.00 31.96 2.73
2250 2393 4.597004 ACACAGCTAGCCAGTTAGTACTA 58.403 43.478 12.13 0.00 31.96 1.82
2251 2394 3.432378 ACACAGCTAGCCAGTTAGTACT 58.568 45.455 12.13 0.00 34.00 2.73
2285 2428 9.813826 TGATAGTGTATTCTATCATGGAGAGAA 57.186 33.333 10.96 5.85 46.14 2.87
2384 2527 0.390472 GCCCTCCTGAGAAGTTGACG 60.390 60.000 0.00 0.00 0.00 4.35
2407 2550 3.064207 TGTTCCAGCACTTATGACGAAC 58.936 45.455 0.00 0.00 31.95 3.95
2484 2627 2.730382 TCAGTAGGTTCTCATACGGCA 58.270 47.619 0.00 0.00 36.18 5.69
2521 2664 4.532916 TGACAAGTGCTTACCTGGGTATAA 59.467 41.667 0.00 0.00 0.00 0.98
2584 2727 7.227910 TGAGTAAAATGACAAGGGTTAAGTCAC 59.772 37.037 0.00 0.00 44.15 3.67
2613 2756 3.198635 CCTTCCTCCAAGTGCTCTCATTA 59.801 47.826 0.00 0.00 0.00 1.90
2788 2931 6.360370 AAAGTAGCTCTGGTATCTTGTTGA 57.640 37.500 0.00 0.00 0.00 3.18
2793 2936 7.707035 CGTCAATAAAAGTAGCTCTGGTATCTT 59.293 37.037 0.00 0.00 0.00 2.40
2799 2942 5.671329 GCAACGTCAATAAAAGTAGCTCTGG 60.671 44.000 0.00 0.00 0.00 3.86
2822 2965 1.068748 CGCCATGCTTATGATTGGAGC 60.069 52.381 0.00 0.00 36.95 4.70
2823 2966 2.225019 GTCGCCATGCTTATGATTGGAG 59.775 50.000 0.00 0.00 0.00 3.86
2859 3002 8.356657 CCAAAATGTATCACAACTTACCAAAGA 58.643 33.333 0.00 0.00 36.50 2.52
2870 3013 6.739331 AAAAGGGACCAAAATGTATCACAA 57.261 33.333 0.00 0.00 0.00 3.33
2904 3047 8.531146 CATTGTCATTACACTATTTTTCCCCTT 58.469 33.333 0.00 0.00 34.61 3.95
3158 3301 1.428869 ATCTCTGTGGGATGTAGGCC 58.571 55.000 0.00 0.00 0.00 5.19
3159 3302 2.171448 ACAATCTCTGTGGGATGTAGGC 59.829 50.000 0.00 0.00 36.69 3.93
3166 3309 3.031736 GCTAGGTACAATCTCTGTGGGA 58.968 50.000 0.00 0.00 39.20 4.37
3203 3346 7.234187 TGAACTGCAATCGAATATTCACTAC 57.766 36.000 15.57 1.62 0.00 2.73
3268 3411 5.598416 TCTCGTAGTCACAATCATGGAAT 57.402 39.130 0.00 0.00 0.00 3.01
3285 3428 2.699954 AGAAAAATCGTGCCATCTCGT 58.300 42.857 0.00 0.00 0.00 4.18
3337 3480 3.885297 AGTTATGACTGTGCAAGCACTTT 59.115 39.130 23.82 11.95 46.30 2.66
3349 3492 5.247110 AGACAGGGCCATATAGTTATGACTG 59.753 44.000 6.18 0.00 37.94 3.51
3361 3504 5.045213 TGAAGAACAAATAGACAGGGCCATA 60.045 40.000 6.18 0.00 0.00 2.74
3440 3589 0.321210 TTGTGCTACGGGTGTCCATG 60.321 55.000 0.00 0.00 0.00 3.66
3495 3644 2.492012 CTCTATTCCTGACTGCATGGC 58.508 52.381 0.00 0.00 0.00 4.40
3536 3685 6.147821 TGCAAAAGTTAAGCTATCACTGAGAC 59.852 38.462 0.00 0.00 0.00 3.36
3644 3793 7.716998 ACATAATCATTAGGTAACAGCTTCAGG 59.283 37.037 0.00 0.00 41.41 3.86
3713 3862 5.815581 ACCACACACATTGTATAATGACCT 58.184 37.500 17.96 0.00 45.21 3.85
3725 3874 6.873076 CCAGCAATTTATTTACCACACACATT 59.127 34.615 0.00 0.00 0.00 2.71
3728 3877 6.019779 TCCAGCAATTTATTTACCACACAC 57.980 37.500 0.00 0.00 0.00 3.82
3759 3908 7.703058 ACGATTTCATTTATCCTCCTGTTTT 57.297 32.000 0.00 0.00 0.00 2.43
3760 3909 7.703058 AACGATTTCATTTATCCTCCTGTTT 57.297 32.000 0.00 0.00 0.00 2.83
3761 3910 8.801882 TTAACGATTTCATTTATCCTCCTGTT 57.198 30.769 0.00 0.00 0.00 3.16
3762 3911 7.499232 CCTTAACGATTTCATTTATCCTCCTGT 59.501 37.037 0.00 0.00 0.00 4.00
3763 3912 7.499232 ACCTTAACGATTTCATTTATCCTCCTG 59.501 37.037 0.00 0.00 0.00 3.86
3781 3935 4.445452 TGCTAACTGAGGTACCTTAACG 57.555 45.455 17.53 3.49 0.00 3.18
3795 3949 4.521146 CCTGTTCAAGATCCATGCTAACT 58.479 43.478 0.00 0.00 0.00 2.24
3869 4023 0.391263 GTCCTGCTAAGGTTGTCCCG 60.391 60.000 0.00 0.00 44.82 5.14
3928 4082 4.943705 TCCTGTCTGATACTTTCAAATGGC 59.056 41.667 0.00 0.00 32.78 4.40
4047 4202 1.468054 GCCAAAAATCCACTAGCAGCG 60.468 52.381 0.00 0.00 0.00 5.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.