Multiple sequence alignment - TraesCS6B01G037700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G037700 chr6B 100.000 2396 0 0 1 2396 22171382 22173777 0.000000e+00 4425.0
1 TraesCS6B01G037700 chr6B 90.410 1929 137 18 1 1919 114733763 114731873 0.000000e+00 2494.0
2 TraesCS6B01G037700 chr6B 92.903 155 11 0 380 534 148307191 148307037 2.400000e-55 226.0
3 TraesCS6B01G037700 chr4B 97.042 1961 56 1 1 1961 547410163 547408205 0.000000e+00 3299.0
4 TraesCS6B01G037700 chr4B 93.273 1977 104 14 1 1961 455978617 455980580 0.000000e+00 2887.0
5 TraesCS6B01G037700 chr2B 94.404 1519 78 6 449 1963 50247314 50248829 0.000000e+00 2327.0
6 TraesCS6B01G037700 chr2B 89.160 1310 93 20 680 1960 763316301 763315012 0.000000e+00 1587.0
7 TraesCS6B01G037700 chr2B 87.500 832 67 10 1152 1962 411889935 411890750 0.000000e+00 926.0
8 TraesCS6B01G037700 chr2B 95.154 454 16 2 1 454 50224967 50225414 0.000000e+00 712.0
9 TraesCS6B01G037700 chr2B 88.320 488 34 5 1494 1960 49187766 49188251 4.470000e-157 564.0
10 TraesCS6B01G037700 chr2B 88.761 436 41 4 1152 1580 49187333 49187767 5.870000e-146 527.0
11 TraesCS6B01G037700 chr2B 91.781 365 28 2 1598 1961 719583501 719583138 7.640000e-140 507.0
12 TraesCS6B01G037700 chr4D 90.257 1437 90 21 555 1960 46138719 46137302 0.000000e+00 1832.0
13 TraesCS6B01G037700 chr2D 88.692 1468 93 26 523 1960 582871452 582872876 0.000000e+00 1724.0
14 TraesCS6B01G037700 chr7B 89.588 1335 107 9 523 1827 747107268 747108600 0.000000e+00 1666.0
15 TraesCS6B01G037700 chr7B 85.422 734 68 5 1254 1960 641950856 641951577 0.000000e+00 726.0
16 TraesCS6B01G037700 chr5D 88.982 1307 108 15 680 1961 399706708 399705413 0.000000e+00 1583.0
17 TraesCS6B01G037700 chr5D 91.324 438 36 2 1961 2396 558528583 558529020 4.410000e-167 597.0
18 TraesCS6B01G037700 chr5D 88.477 486 28 1 7 492 13173019 13172562 1.610000e-156 562.0
19 TraesCS6B01G037700 chr1B 87.595 1322 108 27 680 1960 97809193 97807887 0.000000e+00 1482.0
20 TraesCS6B01G037700 chr7A 90.200 1051 91 8 494 1535 56661014 56662061 0.000000e+00 1360.0
21 TraesCS6B01G037700 chr7A 92.379 433 25 3 1961 2391 722419412 722418986 5.660000e-171 610.0
22 TraesCS6B01G037700 chr7A 91.686 433 32 2 1961 2391 196569534 196569104 4.410000e-167 597.0
23 TraesCS6B01G037700 chr7A 100.000 44 0 0 1 44 17844741 17844698 5.490000e-12 82.4
24 TraesCS6B01G037700 chr5B 91.529 909 68 3 1053 1960 571952650 571953550 0.000000e+00 1243.0
25 TraesCS6B01G037700 chr6A 88.634 827 65 6 1161 1960 584691 585515 0.000000e+00 979.0
26 TraesCS6B01G037700 chrUn 94.050 437 25 1 1961 2396 257036591 257037027 0.000000e+00 662.0
27 TraesCS6B01G037700 chr3D 92.677 437 28 3 1958 2391 555830838 555831273 5.620000e-176 627.0
28 TraesCS6B01G037700 chr3D 89.655 116 9 2 380 495 10934348 10934236 6.900000e-31 145.0
29 TraesCS6B01G037700 chr3D 89.076 119 10 2 377 495 588695222 588695337 6.900000e-31 145.0
30 TraesCS6B01G037700 chr3D 91.667 60 4 1 378 437 45263942 45264000 5.490000e-12 82.4
31 TraesCS6B01G037700 chr4A 92.326 430 31 1 1961 2388 542283476 542283047 5.660000e-171 610.0
32 TraesCS6B01G037700 chr4A 88.462 130 13 1 1 128 714434228 714434357 3.190000e-34 156.0
33 TraesCS6B01G037700 chr3A 91.553 438 29 6 1958 2391 47704965 47704532 4.410000e-167 597.0
34 TraesCS6B01G037700 chr3A 93.132 364 24 1 1598 1960 298800459 298800822 1.260000e-147 532.0
35 TraesCS6B01G037700 chr3A 92.701 137 8 2 380 515 678042762 678042627 1.880000e-46 196.0
36 TraesCS6B01G037700 chr7D 91.533 437 30 7 1961 2396 277723829 277724259 1.590000e-166 595.0
37 TraesCS6B01G037700 chr7D 91.852 135 8 2 363 495 11435386 11435253 4.070000e-43 185.0
38 TraesCS6B01G037700 chr2A 91.096 438 30 5 1961 2391 70751167 70750732 3.430000e-163 584.0
39 TraesCS6B01G037700 chr5A 89.076 119 10 2 377 495 155590749 155590864 6.900000e-31 145.0
40 TraesCS6B01G037700 chr6D 87.931 116 11 2 380 495 372614652 372614540 1.490000e-27 134.0
41 TraesCS6B01G037700 chr6D 85.714 119 14 2 377 495 163425137 163425252 3.230000e-24 122.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G037700 chr6B 22171382 22173777 2395 False 4425.0 4425 100.0000 1 2396 1 chr6B.!!$F1 2395
1 TraesCS6B01G037700 chr6B 114731873 114733763 1890 True 2494.0 2494 90.4100 1 1919 1 chr6B.!!$R1 1918
2 TraesCS6B01G037700 chr4B 547408205 547410163 1958 True 3299.0 3299 97.0420 1 1961 1 chr4B.!!$R1 1960
3 TraesCS6B01G037700 chr4B 455978617 455980580 1963 False 2887.0 2887 93.2730 1 1961 1 chr4B.!!$F1 1960
4 TraesCS6B01G037700 chr2B 50247314 50248829 1515 False 2327.0 2327 94.4040 449 1963 1 chr2B.!!$F2 1514
5 TraesCS6B01G037700 chr2B 763315012 763316301 1289 True 1587.0 1587 89.1600 680 1960 1 chr2B.!!$R2 1280
6 TraesCS6B01G037700 chr2B 411889935 411890750 815 False 926.0 926 87.5000 1152 1962 1 chr2B.!!$F3 810
7 TraesCS6B01G037700 chr2B 49187333 49188251 918 False 545.5 564 88.5405 1152 1960 2 chr2B.!!$F4 808
8 TraesCS6B01G037700 chr4D 46137302 46138719 1417 True 1832.0 1832 90.2570 555 1960 1 chr4D.!!$R1 1405
9 TraesCS6B01G037700 chr2D 582871452 582872876 1424 False 1724.0 1724 88.6920 523 1960 1 chr2D.!!$F1 1437
10 TraesCS6B01G037700 chr7B 747107268 747108600 1332 False 1666.0 1666 89.5880 523 1827 1 chr7B.!!$F2 1304
11 TraesCS6B01G037700 chr7B 641950856 641951577 721 False 726.0 726 85.4220 1254 1960 1 chr7B.!!$F1 706
12 TraesCS6B01G037700 chr5D 399705413 399706708 1295 True 1583.0 1583 88.9820 680 1961 1 chr5D.!!$R2 1281
13 TraesCS6B01G037700 chr1B 97807887 97809193 1306 True 1482.0 1482 87.5950 680 1960 1 chr1B.!!$R1 1280
14 TraesCS6B01G037700 chr7A 56661014 56662061 1047 False 1360.0 1360 90.2000 494 1535 1 chr7A.!!$F1 1041
15 TraesCS6B01G037700 chr5B 571952650 571953550 900 False 1243.0 1243 91.5290 1053 1960 1 chr5B.!!$F1 907
16 TraesCS6B01G037700 chr6A 584691 585515 824 False 979.0 979 88.6340 1161 1960 1 chr6A.!!$F1 799

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
438 439 0.684479 TCCGAGCAGTGATGTAGCCT 60.684 55.0 0.0 0.0 0.0 4.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1929 2104 0.036388 AAAAGGCTACTAGCAGCGCA 60.036 50.0 11.47 0.0 44.75 6.09 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
151 152 5.789574 ATTACAAGATGGGACCCAACTTA 57.210 39.130 29.84 18.42 43.20 2.24
345 346 1.798626 CTGGGACTGGGAGATGATCA 58.201 55.000 0.00 0.00 0.00 2.92
438 439 0.684479 TCCGAGCAGTGATGTAGCCT 60.684 55.000 0.00 0.00 0.00 4.58
588 589 2.041620 CCAAGGGGATTCAGAGTTCCAA 59.958 50.000 0.00 0.00 35.59 3.53
837 839 4.072131 GAGCCATGTTCCACTTTTACTGA 58.928 43.478 0.00 0.00 0.00 3.41
845 847 7.218228 TGTTCCACTTTTACTGATCTACGTA 57.782 36.000 0.00 0.00 0.00 3.57
971 974 7.546250 AGAATCTGAAGTTTCTGAACCTCTA 57.454 36.000 5.70 0.00 38.39 2.43
1015 1018 2.809181 GCGATGCCGATTATCGTCA 58.191 52.632 13.73 7.38 46.67 4.35
1485 1507 3.756434 CCATAACAACGTGTCCCAATCTT 59.244 43.478 0.00 0.00 0.00 2.40
1499 1521 5.295540 GTCCCAATCTTTGATGTCTAGAAGC 59.704 44.000 0.00 0.00 0.00 3.86
1701 1835 4.446994 AGTTAGTAGTAGCGTGGGAAAC 57.553 45.455 0.00 0.00 0.00 2.78
1929 2104 4.683832 CGCTGCTAGTAGTGATTTTACCT 58.316 43.478 15.51 0.00 0.00 3.08
1962 2137 7.167924 AGTAGCCTTTTTCCTAGTAGTGTAC 57.832 40.000 0.00 0.00 0.00 2.90
1963 2138 6.952938 AGTAGCCTTTTTCCTAGTAGTGTACT 59.047 38.462 0.00 0.00 42.68 2.73
1964 2139 6.038997 AGCCTTTTTCCTAGTAGTGTACTG 57.961 41.667 0.00 0.00 39.81 2.74
1965 2140 5.543020 AGCCTTTTTCCTAGTAGTGTACTGT 59.457 40.000 0.00 0.00 39.81 3.55
1966 2141 6.042897 AGCCTTTTTCCTAGTAGTGTACTGTT 59.957 38.462 0.00 0.00 39.81 3.16
1967 2142 7.234166 AGCCTTTTTCCTAGTAGTGTACTGTTA 59.766 37.037 0.00 0.00 39.81 2.41
1968 2143 8.039538 GCCTTTTTCCTAGTAGTGTACTGTTAT 58.960 37.037 0.00 0.00 39.81 1.89
1969 2144 9.939802 CCTTTTTCCTAGTAGTGTACTGTTATT 57.060 33.333 0.00 0.00 39.81 1.40
2005 2180 5.726980 TTTTCTGCTCCATATTTTGTGCT 57.273 34.783 0.00 0.00 0.00 4.40
2006 2181 4.707030 TTCTGCTCCATATTTTGTGCTG 57.293 40.909 0.00 0.00 0.00 4.41
2007 2182 2.424601 TCTGCTCCATATTTTGTGCTGC 59.575 45.455 0.00 0.00 0.00 5.25
2008 2183 2.426024 CTGCTCCATATTTTGTGCTGCT 59.574 45.455 0.00 0.00 0.00 4.24
2009 2184 2.164827 TGCTCCATATTTTGTGCTGCTG 59.835 45.455 0.00 0.00 0.00 4.41
2010 2185 2.424601 GCTCCATATTTTGTGCTGCTGA 59.575 45.455 0.00 0.00 0.00 4.26
2011 2186 3.119388 GCTCCATATTTTGTGCTGCTGAA 60.119 43.478 0.00 0.00 0.00 3.02
2012 2187 4.441079 GCTCCATATTTTGTGCTGCTGAAT 60.441 41.667 0.00 0.00 0.00 2.57
2013 2188 5.657474 CTCCATATTTTGTGCTGCTGAATT 58.343 37.500 0.00 0.00 0.00 2.17
2014 2189 6.040209 TCCATATTTTGTGCTGCTGAATTT 57.960 33.333 0.00 0.00 0.00 1.82
2015 2190 6.465948 TCCATATTTTGTGCTGCTGAATTTT 58.534 32.000 0.00 0.00 0.00 1.82
2016 2191 6.369340 TCCATATTTTGTGCTGCTGAATTTTG 59.631 34.615 0.00 0.00 0.00 2.44
2017 2192 6.148150 CCATATTTTGTGCTGCTGAATTTTGT 59.852 34.615 0.00 0.00 0.00 2.83
2018 2193 7.308109 CCATATTTTGTGCTGCTGAATTTTGTT 60.308 33.333 0.00 0.00 0.00 2.83
2019 2194 5.876612 TTTTGTGCTGCTGAATTTTGTTT 57.123 30.435 0.00 0.00 0.00 2.83
2020 2195 6.974932 TTTTGTGCTGCTGAATTTTGTTTA 57.025 29.167 0.00 0.00 0.00 2.01
2021 2196 6.586868 TTTGTGCTGCTGAATTTTGTTTAG 57.413 33.333 0.00 0.00 0.00 1.85
2022 2197 4.619973 TGTGCTGCTGAATTTTGTTTAGG 58.380 39.130 0.00 0.00 0.00 2.69
2023 2198 3.989817 GTGCTGCTGAATTTTGTTTAGGG 59.010 43.478 0.00 0.00 0.00 3.53
2024 2199 3.640967 TGCTGCTGAATTTTGTTTAGGGT 59.359 39.130 0.00 0.00 0.00 4.34
2025 2200 4.100808 TGCTGCTGAATTTTGTTTAGGGTT 59.899 37.500 0.00 0.00 0.00 4.11
2026 2201 5.056480 GCTGCTGAATTTTGTTTAGGGTTT 58.944 37.500 0.00 0.00 0.00 3.27
2027 2202 5.527214 GCTGCTGAATTTTGTTTAGGGTTTT 59.473 36.000 0.00 0.00 0.00 2.43
2028 2203 6.704050 GCTGCTGAATTTTGTTTAGGGTTTTA 59.296 34.615 0.00 0.00 0.00 1.52
2029 2204 7.387673 GCTGCTGAATTTTGTTTAGGGTTTTAT 59.612 33.333 0.00 0.00 0.00 1.40
2030 2205 9.921637 CTGCTGAATTTTGTTTAGGGTTTTATA 57.078 29.630 0.00 0.00 0.00 0.98
2031 2206 9.699703 TGCTGAATTTTGTTTAGGGTTTTATAC 57.300 29.630 0.00 0.00 0.00 1.47
2032 2207 9.699703 GCTGAATTTTGTTTAGGGTTTTATACA 57.300 29.630 0.00 0.00 0.00 2.29
2045 2220 8.548880 AGGGTTTTATACAATAGTCTCTAGCA 57.451 34.615 0.00 0.00 0.00 3.49
2046 2221 8.643324 AGGGTTTTATACAATAGTCTCTAGCAG 58.357 37.037 0.00 0.00 0.00 4.24
2047 2222 8.639761 GGGTTTTATACAATAGTCTCTAGCAGA 58.360 37.037 0.00 0.00 0.00 4.26
2054 2229 9.746457 ATACAATAGTCTCTAGCAGATCATACA 57.254 33.333 0.00 0.00 32.08 2.29
2055 2230 7.881142 ACAATAGTCTCTAGCAGATCATACAC 58.119 38.462 0.00 0.00 32.08 2.90
2056 2231 7.503902 ACAATAGTCTCTAGCAGATCATACACA 59.496 37.037 0.00 0.00 32.08 3.72
2057 2232 8.522003 CAATAGTCTCTAGCAGATCATACACAT 58.478 37.037 0.00 0.00 32.08 3.21
2058 2233 9.746457 AATAGTCTCTAGCAGATCATACACATA 57.254 33.333 0.00 0.00 32.08 2.29
2059 2234 7.447374 AGTCTCTAGCAGATCATACACATAC 57.553 40.000 0.00 0.00 32.08 2.39
2060 2235 7.001073 AGTCTCTAGCAGATCATACACATACA 58.999 38.462 0.00 0.00 32.08 2.29
2061 2236 7.503902 AGTCTCTAGCAGATCATACACATACAA 59.496 37.037 0.00 0.00 32.08 2.41
2062 2237 8.138074 GTCTCTAGCAGATCATACACATACAAA 58.862 37.037 0.00 0.00 32.08 2.83
2063 2238 8.864087 TCTCTAGCAGATCATACACATACAAAT 58.136 33.333 0.00 0.00 0.00 2.32
2064 2239 9.138062 CTCTAGCAGATCATACACATACAAATC 57.862 37.037 0.00 0.00 0.00 2.17
2065 2240 8.864087 TCTAGCAGATCATACACATACAAATCT 58.136 33.333 0.00 0.00 0.00 2.40
2066 2241 7.725818 AGCAGATCATACACATACAAATCTG 57.274 36.000 0.00 0.00 40.85 2.90
2067 2242 7.503549 AGCAGATCATACACATACAAATCTGA 58.496 34.615 12.32 0.00 40.52 3.27
2068 2243 8.155510 AGCAGATCATACACATACAAATCTGAT 58.844 33.333 12.32 4.34 40.52 2.90
2069 2244 8.441608 GCAGATCATACACATACAAATCTGATC 58.558 37.037 12.32 0.00 40.52 2.92
2070 2245 9.485206 CAGATCATACACATACAAATCTGATCA 57.515 33.333 10.70 0.00 40.52 2.92
2080 2255 9.896645 ACATACAAATCTGATCATATCATACCC 57.103 33.333 0.00 0.00 38.85 3.69
2081 2256 9.895138 CATACAAATCTGATCATATCATACCCA 57.105 33.333 0.00 0.00 38.85 4.51
2084 2259 9.896645 ACAAATCTGATCATATCATACCCATAC 57.103 33.333 0.00 0.00 38.85 2.39
2085 2260 9.895138 CAAATCTGATCATATCATACCCATACA 57.105 33.333 0.00 0.00 38.85 2.29
2098 2273 8.491045 TCATACCCATACAAATAGTCTCATCA 57.509 34.615 0.00 0.00 0.00 3.07
2099 2274 8.933653 TCATACCCATACAAATAGTCTCATCAA 58.066 33.333 0.00 0.00 0.00 2.57
2100 2275 9.559732 CATACCCATACAAATAGTCTCATCAAA 57.440 33.333 0.00 0.00 0.00 2.69
2102 2277 8.682936 ACCCATACAAATAGTCTCATCAAATC 57.317 34.615 0.00 0.00 0.00 2.17
2103 2278 7.442364 ACCCATACAAATAGTCTCATCAAATCG 59.558 37.037 0.00 0.00 0.00 3.34
2104 2279 7.657354 CCCATACAAATAGTCTCATCAAATCGA 59.343 37.037 0.00 0.00 0.00 3.59
2105 2280 9.212641 CCATACAAATAGTCTCATCAAATCGAT 57.787 33.333 0.00 0.00 33.27 3.59
2107 2282 9.987272 ATACAAATAGTCTCATCAAATCGATCA 57.013 29.630 0.00 0.00 29.21 2.92
2108 2283 8.899427 ACAAATAGTCTCATCAAATCGATCAT 57.101 30.769 0.00 0.00 29.21 2.45
2109 2284 8.771766 ACAAATAGTCTCATCAAATCGATCATG 58.228 33.333 0.00 1.20 29.21 3.07
2110 2285 8.771766 CAAATAGTCTCATCAAATCGATCATGT 58.228 33.333 0.00 0.00 29.21 3.21
2111 2286 8.531622 AATAGTCTCATCAAATCGATCATGTC 57.468 34.615 0.00 0.00 29.21 3.06
2112 2287 5.910614 AGTCTCATCAAATCGATCATGTCA 58.089 37.500 0.00 0.00 29.21 3.58
2113 2288 6.522946 AGTCTCATCAAATCGATCATGTCAT 58.477 36.000 0.00 0.00 29.21 3.06
2114 2289 6.645827 AGTCTCATCAAATCGATCATGTCATC 59.354 38.462 0.00 0.00 29.21 2.92
2115 2290 6.423001 GTCTCATCAAATCGATCATGTCATCA 59.577 38.462 0.00 0.00 29.21 3.07
2116 2291 7.117956 GTCTCATCAAATCGATCATGTCATCAT 59.882 37.037 0.00 0.00 29.21 2.45
2117 2292 7.331193 TCTCATCAAATCGATCATGTCATCATC 59.669 37.037 0.00 0.00 29.21 2.92
2118 2293 6.932400 TCATCAAATCGATCATGTCATCATCA 59.068 34.615 0.00 0.00 29.21 3.07
2119 2294 7.606456 TCATCAAATCGATCATGTCATCATCAT 59.394 33.333 0.00 0.00 29.21 2.45
2120 2295 8.879759 CATCAAATCGATCATGTCATCATCATA 58.120 33.333 0.00 0.00 29.21 2.15
2121 2296 8.836268 TCAAATCGATCATGTCATCATCATAA 57.164 30.769 0.00 0.00 31.15 1.90
2122 2297 9.444600 TCAAATCGATCATGTCATCATCATAAT 57.555 29.630 0.00 0.00 31.15 1.28
2123 2298 9.704098 CAAATCGATCATGTCATCATCATAATC 57.296 33.333 0.00 0.00 31.15 1.75
2124 2299 9.444600 AAATCGATCATGTCATCATCATAATCA 57.555 29.630 0.00 0.00 31.15 2.57
2125 2300 9.614792 AATCGATCATGTCATCATCATAATCAT 57.385 29.630 0.00 0.00 31.15 2.45
2126 2301 8.644318 TCGATCATGTCATCATCATAATCATC 57.356 34.615 0.00 0.00 31.15 2.92
2127 2302 8.255206 TCGATCATGTCATCATCATAATCATCA 58.745 33.333 0.00 0.00 31.15 3.07
2128 2303 9.046296 CGATCATGTCATCATCATAATCATCAT 57.954 33.333 0.00 0.00 31.15 2.45
2130 2305 8.732746 TCATGTCATCATCATAATCATCATCC 57.267 34.615 0.00 0.00 31.15 3.51
2131 2306 8.325787 TCATGTCATCATCATAATCATCATCCA 58.674 33.333 0.00 0.00 31.15 3.41
2132 2307 8.956426 CATGTCATCATCATAATCATCATCCAA 58.044 33.333 0.00 0.00 31.15 3.53
2133 2308 8.331730 TGTCATCATCATAATCATCATCCAAC 57.668 34.615 0.00 0.00 0.00 3.77
2134 2309 7.940137 TGTCATCATCATAATCATCATCCAACA 59.060 33.333 0.00 0.00 0.00 3.33
2135 2310 8.235226 GTCATCATCATAATCATCATCCAACAC 58.765 37.037 0.00 0.00 0.00 3.32
2136 2311 7.940137 TCATCATCATAATCATCATCCAACACA 59.060 33.333 0.00 0.00 0.00 3.72
2137 2312 8.573035 CATCATCATAATCATCATCCAACACAA 58.427 33.333 0.00 0.00 0.00 3.33
2138 2313 8.522542 TCATCATAATCATCATCCAACACAAA 57.477 30.769 0.00 0.00 0.00 2.83
2139 2314 8.968969 TCATCATAATCATCATCCAACACAAAA 58.031 29.630 0.00 0.00 0.00 2.44
2140 2315 9.758651 CATCATAATCATCATCCAACACAAAAT 57.241 29.630 0.00 0.00 0.00 1.82
2141 2316 9.758651 ATCATAATCATCATCCAACACAAAATG 57.241 29.630 0.00 0.00 0.00 2.32
2142 2317 8.968969 TCATAATCATCATCCAACACAAAATGA 58.031 29.630 0.00 0.00 33.04 2.57
2143 2318 9.758651 CATAATCATCATCCAACACAAAATGAT 57.241 29.630 0.00 0.00 38.95 2.45
2146 2321 6.880822 CATCATCCAACACAAAATGATGTC 57.119 37.500 13.44 0.00 45.28 3.06
2147 2322 6.627243 CATCATCCAACACAAAATGATGTCT 58.373 36.000 13.44 0.00 45.28 3.41
2148 2323 6.258230 TCATCCAACACAAAATGATGTCTC 57.742 37.500 0.00 0.00 35.47 3.36
2149 2324 6.005823 TCATCCAACACAAAATGATGTCTCT 58.994 36.000 0.00 0.00 35.47 3.10
2150 2325 5.947228 TCCAACACAAAATGATGTCTCTC 57.053 39.130 0.00 0.00 29.15 3.20
2151 2326 4.452114 TCCAACACAAAATGATGTCTCTCG 59.548 41.667 0.00 0.00 29.15 4.04
2152 2327 4.378770 CCAACACAAAATGATGTCTCTCGG 60.379 45.833 0.00 0.00 29.15 4.63
2153 2328 2.744202 ACACAAAATGATGTCTCTCGGC 59.256 45.455 0.00 0.00 0.00 5.54
2154 2329 2.743664 CACAAAATGATGTCTCTCGGCA 59.256 45.455 0.00 0.00 0.00 5.69
2155 2330 3.376234 CACAAAATGATGTCTCTCGGCAT 59.624 43.478 0.00 0.00 0.00 4.40
2156 2331 3.624861 ACAAAATGATGTCTCTCGGCATC 59.375 43.478 0.25 0.25 41.19 3.91
2159 2334 2.808523 TGATGTCTCTCGGCATCATC 57.191 50.000 5.58 0.00 44.29 2.92
2160 2335 2.314246 TGATGTCTCTCGGCATCATCT 58.686 47.619 5.58 0.00 44.29 2.90
2161 2336 2.295629 TGATGTCTCTCGGCATCATCTC 59.704 50.000 5.58 0.00 44.29 2.75
2162 2337 0.665298 TGTCTCTCGGCATCATCTCG 59.335 55.000 0.00 0.00 0.00 4.04
2163 2338 0.947960 GTCTCTCGGCATCATCTCGA 59.052 55.000 0.00 0.00 0.00 4.04
2164 2339 1.335182 GTCTCTCGGCATCATCTCGAA 59.665 52.381 0.00 0.00 32.35 3.71
2165 2340 2.024414 TCTCTCGGCATCATCTCGAAA 58.976 47.619 0.00 0.00 32.35 3.46
2166 2341 2.625314 TCTCTCGGCATCATCTCGAAAT 59.375 45.455 0.00 0.00 32.35 2.17
2167 2342 3.821033 TCTCTCGGCATCATCTCGAAATA 59.179 43.478 0.00 0.00 32.35 1.40
2168 2343 4.083057 TCTCTCGGCATCATCTCGAAATAG 60.083 45.833 0.00 0.00 32.35 1.73
2169 2344 3.821033 TCTCGGCATCATCTCGAAATAGA 59.179 43.478 0.00 0.00 32.35 1.98
2170 2345 4.083057 TCTCGGCATCATCTCGAAATAGAG 60.083 45.833 0.00 0.00 39.52 2.43
2185 2360 9.952188 CTCGAAATAGAGATACAAGTTATGACA 57.048 33.333 0.00 0.00 40.57 3.58
2192 2367 7.421599 AGAGATACAAGTTATGACATGTCTCG 58.578 38.462 25.55 9.17 38.52 4.04
2193 2368 7.283354 AGAGATACAAGTTATGACATGTCTCGA 59.717 37.037 25.55 7.12 38.52 4.04
2194 2369 7.772166 AGATACAAGTTATGACATGTCTCGAA 58.228 34.615 25.55 14.02 38.52 3.71
2195 2370 8.417106 AGATACAAGTTATGACATGTCTCGAAT 58.583 33.333 25.55 13.56 38.52 3.34
2196 2371 9.678941 GATACAAGTTATGACATGTCTCGAATA 57.321 33.333 25.55 12.59 38.52 1.75
2197 2372 7.757097 ACAAGTTATGACATGTCTCGAATAC 57.243 36.000 25.55 14.33 32.65 1.89
2198 2373 7.548097 ACAAGTTATGACATGTCTCGAATACT 58.452 34.615 25.55 16.02 32.65 2.12
2199 2374 8.035394 ACAAGTTATGACATGTCTCGAATACTT 58.965 33.333 25.55 19.85 32.65 2.24
2200 2375 9.516314 CAAGTTATGACATGTCTCGAATACTTA 57.484 33.333 25.55 2.57 0.00 2.24
2201 2376 9.517609 AAGTTATGACATGTCTCGAATACTTAC 57.482 33.333 25.55 10.57 0.00 2.34
2202 2377 8.683615 AGTTATGACATGTCTCGAATACTTACA 58.316 33.333 25.55 2.51 0.00 2.41
2203 2378 9.297586 GTTATGACATGTCTCGAATACTTACAA 57.702 33.333 25.55 1.39 0.00 2.41
2204 2379 7.757097 ATGACATGTCTCGAATACTTACAAC 57.243 36.000 25.55 0.00 0.00 3.32
2205 2380 6.920817 TGACATGTCTCGAATACTTACAACT 58.079 36.000 25.55 0.00 0.00 3.16
2206 2381 8.047413 TGACATGTCTCGAATACTTACAACTA 57.953 34.615 25.55 0.00 0.00 2.24
2207 2382 7.966753 TGACATGTCTCGAATACTTACAACTAC 59.033 37.037 25.55 0.00 0.00 2.73
2208 2383 7.823665 ACATGTCTCGAATACTTACAACTACA 58.176 34.615 0.00 0.00 0.00 2.74
2209 2384 8.467598 ACATGTCTCGAATACTTACAACTACAT 58.532 33.333 0.00 0.00 0.00 2.29
2210 2385 9.302345 CATGTCTCGAATACTTACAACTACATT 57.698 33.333 0.00 0.00 0.00 2.71
2211 2386 8.683550 TGTCTCGAATACTTACAACTACATTG 57.316 34.615 0.00 0.00 44.60 2.82
2226 2401 8.267620 CAACTACATTGTCATCCATCTAAACA 57.732 34.615 0.00 0.00 33.20 2.83
2227 2402 8.729756 CAACTACATTGTCATCCATCTAAACAA 58.270 33.333 0.00 0.00 34.64 2.83
2228 2403 9.466497 AACTACATTGTCATCCATCTAAACAAT 57.534 29.630 0.00 0.00 40.25 2.71
2229 2404 9.113838 ACTACATTGTCATCCATCTAAACAATC 57.886 33.333 0.00 0.00 38.21 2.67
2230 2405 7.943079 ACATTGTCATCCATCTAAACAATCA 57.057 32.000 0.00 0.00 38.21 2.57
2231 2406 7.765307 ACATTGTCATCCATCTAAACAATCAC 58.235 34.615 0.00 0.00 38.21 3.06
2232 2407 7.394077 ACATTGTCATCCATCTAAACAATCACA 59.606 33.333 0.00 0.00 38.21 3.58
2233 2408 7.943079 TTGTCATCCATCTAAACAATCACAT 57.057 32.000 0.00 0.00 0.00 3.21
2234 2409 9.631257 ATTGTCATCCATCTAAACAATCACATA 57.369 29.630 0.00 0.00 36.14 2.29
2235 2410 8.667076 TGTCATCCATCTAAACAATCACATAG 57.333 34.615 0.00 0.00 0.00 2.23
2236 2411 8.485392 TGTCATCCATCTAAACAATCACATAGA 58.515 33.333 0.00 0.00 0.00 1.98
2237 2412 8.768955 GTCATCCATCTAAACAATCACATAGAC 58.231 37.037 0.00 0.00 0.00 2.59
2238 2413 7.653311 TCATCCATCTAAACAATCACATAGACG 59.347 37.037 0.00 0.00 0.00 4.18
2239 2414 7.107639 TCCATCTAAACAATCACATAGACGA 57.892 36.000 0.00 0.00 0.00 4.20
2240 2415 7.203218 TCCATCTAAACAATCACATAGACGAG 58.797 38.462 0.00 0.00 0.00 4.18
2241 2416 7.068226 TCCATCTAAACAATCACATAGACGAGA 59.932 37.037 0.00 0.00 0.00 4.04
2242 2417 7.706607 CCATCTAAACAATCACATAGACGAGAA 59.293 37.037 0.00 0.00 0.00 2.87
2243 2418 8.750416 CATCTAAACAATCACATAGACGAGAAG 58.250 37.037 0.00 0.00 0.00 2.85
2244 2419 8.051901 TCTAAACAATCACATAGACGAGAAGA 57.948 34.615 0.00 0.00 0.00 2.87
2245 2420 8.184848 TCTAAACAATCACATAGACGAGAAGAG 58.815 37.037 0.00 0.00 0.00 2.85
2246 2421 4.677584 ACAATCACATAGACGAGAAGAGC 58.322 43.478 0.00 0.00 0.00 4.09
2247 2422 4.400884 ACAATCACATAGACGAGAAGAGCT 59.599 41.667 0.00 0.00 0.00 4.09
2248 2423 5.590663 ACAATCACATAGACGAGAAGAGCTA 59.409 40.000 0.00 0.00 0.00 3.32
2249 2424 6.264292 ACAATCACATAGACGAGAAGAGCTAT 59.736 38.462 0.00 0.00 0.00 2.97
2250 2425 5.933187 TCACATAGACGAGAAGAGCTATC 57.067 43.478 0.00 0.00 0.00 2.08
2251 2426 5.368989 TCACATAGACGAGAAGAGCTATCA 58.631 41.667 0.00 0.00 0.00 2.15
2252 2427 5.237561 TCACATAGACGAGAAGAGCTATCAC 59.762 44.000 0.00 0.00 0.00 3.06
2253 2428 5.238432 CACATAGACGAGAAGAGCTATCACT 59.762 44.000 0.00 0.00 0.00 3.41
2254 2429 6.425417 CACATAGACGAGAAGAGCTATCACTA 59.575 42.308 0.00 0.00 0.00 2.74
2255 2430 7.119116 CACATAGACGAGAAGAGCTATCACTAT 59.881 40.741 0.00 0.00 0.00 2.12
2256 2431 5.940192 AGACGAGAAGAGCTATCACTATG 57.060 43.478 0.00 0.00 0.00 2.23
2257 2432 5.616270 AGACGAGAAGAGCTATCACTATGA 58.384 41.667 0.00 0.00 0.00 2.15
2258 2433 5.700832 AGACGAGAAGAGCTATCACTATGAG 59.299 44.000 0.00 0.00 0.00 2.90
2259 2434 5.373222 ACGAGAAGAGCTATCACTATGAGT 58.627 41.667 0.00 0.00 0.00 3.41
2274 2449 6.219417 ACTATGAGTGAGAGAGAAACCATG 57.781 41.667 0.00 0.00 0.00 3.66
2275 2450 3.325293 TGAGTGAGAGAGAAACCATGC 57.675 47.619 0.00 0.00 0.00 4.06
2276 2451 2.634453 TGAGTGAGAGAGAAACCATGCA 59.366 45.455 0.00 0.00 0.00 3.96
2277 2452 3.260740 GAGTGAGAGAGAAACCATGCAG 58.739 50.000 0.00 0.00 0.00 4.41
2278 2453 2.636893 AGTGAGAGAGAAACCATGCAGT 59.363 45.455 0.00 0.00 0.00 4.40
2279 2454 3.834813 AGTGAGAGAGAAACCATGCAGTA 59.165 43.478 0.00 0.00 0.00 2.74
2280 2455 3.929610 GTGAGAGAGAAACCATGCAGTAC 59.070 47.826 0.00 0.00 0.00 2.73
2281 2456 3.578282 TGAGAGAGAAACCATGCAGTACA 59.422 43.478 0.00 0.00 0.00 2.90
2282 2457 4.223700 TGAGAGAGAAACCATGCAGTACAT 59.776 41.667 0.00 0.00 40.66 2.29
2289 2464 4.863707 ATGCAGTACATGAGGCGG 57.136 55.556 0.00 0.00 37.70 6.13
2290 2465 1.524621 ATGCAGTACATGAGGCGGC 60.525 57.895 0.00 0.00 37.70 6.53
2291 2466 3.264897 GCAGTACATGAGGCGGCG 61.265 66.667 0.51 0.51 0.00 6.46
2292 2467 2.586079 CAGTACATGAGGCGGCGG 60.586 66.667 9.78 0.00 0.00 6.13
2293 2468 3.075005 AGTACATGAGGCGGCGGT 61.075 61.111 9.78 3.55 0.00 5.68
2294 2469 2.125269 GTACATGAGGCGGCGGTT 60.125 61.111 9.78 0.00 0.00 4.44
2295 2470 1.142314 GTACATGAGGCGGCGGTTA 59.858 57.895 9.78 0.00 0.00 2.85
2296 2471 0.249741 GTACATGAGGCGGCGGTTAT 60.250 55.000 9.78 0.00 0.00 1.89
2297 2472 0.249699 TACATGAGGCGGCGGTTATG 60.250 55.000 9.78 9.51 0.00 1.90
2298 2473 1.227527 CATGAGGCGGCGGTTATGA 60.228 57.895 9.78 0.00 0.00 2.15
2299 2474 0.603707 CATGAGGCGGCGGTTATGAT 60.604 55.000 9.78 0.00 0.00 2.45
2300 2475 0.108585 ATGAGGCGGCGGTTATGATT 59.891 50.000 9.78 0.00 0.00 2.57
2301 2476 0.531974 TGAGGCGGCGGTTATGATTC 60.532 55.000 9.78 0.00 0.00 2.52
2302 2477 1.227853 AGGCGGCGGTTATGATTCC 60.228 57.895 9.78 0.00 0.00 3.01
2303 2478 1.227853 GGCGGCGGTTATGATTCCT 60.228 57.895 9.78 0.00 0.00 3.36
2304 2479 1.228657 GGCGGCGGTTATGATTCCTC 61.229 60.000 9.78 0.00 0.00 3.71
2305 2480 0.249911 GCGGCGGTTATGATTCCTCT 60.250 55.000 9.78 0.00 0.00 3.69
2306 2481 1.784525 CGGCGGTTATGATTCCTCTC 58.215 55.000 0.00 0.00 0.00 3.20
2307 2482 1.341531 CGGCGGTTATGATTCCTCTCT 59.658 52.381 0.00 0.00 0.00 3.10
2308 2483 2.608261 CGGCGGTTATGATTCCTCTCTC 60.608 54.545 0.00 0.00 0.00 3.20
2309 2484 2.608261 GGCGGTTATGATTCCTCTCTCG 60.608 54.545 0.00 0.00 0.00 4.04
2310 2485 2.667137 CGGTTATGATTCCTCTCTCGC 58.333 52.381 0.00 0.00 0.00 5.03
2311 2486 2.667137 GGTTATGATTCCTCTCTCGCG 58.333 52.381 0.00 0.00 0.00 5.87
2312 2487 2.055100 GTTATGATTCCTCTCTCGCGC 58.945 52.381 0.00 0.00 0.00 6.86
2313 2488 1.610363 TATGATTCCTCTCTCGCGCT 58.390 50.000 5.56 0.00 0.00 5.92
2314 2489 1.610363 ATGATTCCTCTCTCGCGCTA 58.390 50.000 5.56 0.00 0.00 4.26
2315 2490 0.947960 TGATTCCTCTCTCGCGCTAG 59.052 55.000 5.56 3.56 0.00 3.42
2316 2491 0.948678 GATTCCTCTCTCGCGCTAGT 59.051 55.000 8.95 0.00 0.00 2.57
2317 2492 0.665835 ATTCCTCTCTCGCGCTAGTG 59.334 55.000 8.95 6.75 0.00 2.74
2318 2493 0.677098 TTCCTCTCTCGCGCTAGTGT 60.677 55.000 8.95 0.00 0.00 3.55
2319 2494 1.063327 CCTCTCTCGCGCTAGTGTG 59.937 63.158 10.65 10.65 0.00 3.82
2320 2495 1.369839 CCTCTCTCGCGCTAGTGTGA 61.370 60.000 18.03 18.03 0.00 3.58
2321 2496 0.448197 CTCTCTCGCGCTAGTGTGAA 59.552 55.000 19.38 10.27 31.18 3.18
2322 2497 0.168348 TCTCTCGCGCTAGTGTGAAC 59.832 55.000 19.38 0.00 31.18 3.18
2323 2498 0.798771 CTCTCGCGCTAGTGTGAACC 60.799 60.000 19.38 0.00 31.18 3.62
2324 2499 1.213013 CTCGCGCTAGTGTGAACCT 59.787 57.895 19.38 0.00 0.00 3.50
2325 2500 0.798771 CTCGCGCTAGTGTGAACCTC 60.799 60.000 19.38 0.00 0.00 3.85
2326 2501 1.080772 CGCGCTAGTGTGAACCTCA 60.081 57.895 11.47 0.00 0.00 3.86
2327 2502 0.666274 CGCGCTAGTGTGAACCTCAA 60.666 55.000 11.47 0.00 0.00 3.02
2328 2503 1.071605 GCGCTAGTGTGAACCTCAAG 58.928 55.000 0.00 0.00 0.00 3.02
2329 2504 1.605712 GCGCTAGTGTGAACCTCAAGT 60.606 52.381 0.00 0.00 0.00 3.16
2330 2505 2.352421 GCGCTAGTGTGAACCTCAAGTA 60.352 50.000 0.00 0.00 0.00 2.24
2331 2506 3.859627 GCGCTAGTGTGAACCTCAAGTAA 60.860 47.826 0.00 0.00 0.00 2.24
2332 2507 3.673809 CGCTAGTGTGAACCTCAAGTAAC 59.326 47.826 0.00 0.00 0.00 2.50
2333 2508 4.558898 CGCTAGTGTGAACCTCAAGTAACT 60.559 45.833 0.00 0.00 0.00 2.24
2334 2509 5.335426 CGCTAGTGTGAACCTCAAGTAACTA 60.335 44.000 0.00 0.00 0.00 2.24
2335 2510 6.094061 GCTAGTGTGAACCTCAAGTAACTAG 58.906 44.000 0.00 0.00 0.00 2.57
2336 2511 4.884247 AGTGTGAACCTCAAGTAACTAGC 58.116 43.478 0.00 0.00 0.00 3.42
2337 2512 4.589374 AGTGTGAACCTCAAGTAACTAGCT 59.411 41.667 0.00 0.00 0.00 3.32
2338 2513 5.070580 AGTGTGAACCTCAAGTAACTAGCTT 59.929 40.000 0.00 0.00 0.00 3.74
2339 2514 5.405873 GTGTGAACCTCAAGTAACTAGCTTC 59.594 44.000 0.00 0.00 0.00 3.86
2340 2515 5.304614 TGTGAACCTCAAGTAACTAGCTTCT 59.695 40.000 0.00 0.00 0.00 2.85
2341 2516 5.635700 GTGAACCTCAAGTAACTAGCTTCTG 59.364 44.000 0.00 0.00 0.00 3.02
2342 2517 4.195225 ACCTCAAGTAACTAGCTTCTGC 57.805 45.455 0.00 0.00 40.05 4.26
2354 2529 1.521580 GCTTCTGCTTCTTGTCTGCT 58.478 50.000 0.00 0.00 36.03 4.24
2355 2530 1.878734 GCTTCTGCTTCTTGTCTGCTT 59.121 47.619 0.00 0.00 36.03 3.91
2356 2531 2.292845 GCTTCTGCTTCTTGTCTGCTTT 59.707 45.455 0.00 0.00 36.03 3.51
2357 2532 3.243334 GCTTCTGCTTCTTGTCTGCTTTT 60.243 43.478 0.00 0.00 36.03 2.27
2358 2533 3.976793 TCTGCTTCTTGTCTGCTTTTG 57.023 42.857 0.00 0.00 0.00 2.44
2359 2534 3.544684 TCTGCTTCTTGTCTGCTTTTGA 58.455 40.909 0.00 0.00 0.00 2.69
2360 2535 3.947196 TCTGCTTCTTGTCTGCTTTTGAA 59.053 39.130 0.00 0.00 0.00 2.69
2361 2536 4.036027 TCTGCTTCTTGTCTGCTTTTGAAG 59.964 41.667 0.00 0.00 35.42 3.02
2394 2569 3.382832 CCCGAGAACCGCTCCACT 61.383 66.667 0.00 0.00 40.70 4.00
2395 2570 2.657237 CCGAGAACCGCTCCACTT 59.343 61.111 0.00 0.00 40.70 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
151 152 3.829026 GAGAAACCATTTGGCCTCTCTTT 59.171 43.478 3.32 2.13 40.43 2.52
182 183 5.171339 AGGAAATGCTACTGTGATGTTCT 57.829 39.130 0.00 0.00 0.00 3.01
345 346 3.252974 CAAGAGGCTACTTGGAACGAT 57.747 47.619 14.90 0.00 42.17 3.73
420 421 0.529337 CAGGCTACATCACTGCTCGG 60.529 60.000 0.00 0.00 0.00 4.63
438 439 7.172532 CACACAAAGAGCTAGTTTACCAATACA 59.827 37.037 0.00 0.00 0.00 2.29
837 839 8.942338 TTCAGCAGTGAAAATATTACGTAGAT 57.058 30.769 0.00 0.00 39.85 1.98
845 847 7.885399 ACTAACCTCTTCAGCAGTGAAAATATT 59.115 33.333 0.00 0.00 42.27 1.28
971 974 2.102578 GAACCCTGCAGCATTACCAAT 58.897 47.619 8.66 0.00 0.00 3.16
1015 1018 0.680061 GTCCAGTCCACGAACCTCTT 59.320 55.000 0.00 0.00 0.00 2.85
1169 1185 3.448093 TTCAGAATTGGCCACATACCA 57.552 42.857 3.88 0.00 34.65 3.25
1428 1450 1.616374 TGGCTCACTCGTCAATGTGTA 59.384 47.619 0.00 0.00 35.82 2.90
1485 1507 5.738619 TTACCACTGCTTCTAGACATCAA 57.261 39.130 0.00 0.00 0.00 2.57
1499 1521 6.900568 TGCAAATTCAAAACTTTACCACTG 57.099 33.333 0.00 0.00 0.00 3.66
1678 1812 5.221501 TGTTTCCCACGCTACTACTAACTTT 60.222 40.000 0.00 0.00 0.00 2.66
1701 1835 8.041829 TCCTAAATACTAGTAGCGAGCTATTG 57.958 38.462 8.85 4.64 0.00 1.90
1805 1962 8.848439 ACTTTGTTAGTATTAGCGTGTGCAACA 61.848 37.037 0.00 0.00 39.34 3.33
1819 1979 6.909357 CGCGCTACTACTAACTTTGTTAGTAT 59.091 38.462 22.53 16.89 37.01 2.12
1899 2074 1.721664 CTACTAGCAGCGCGGGTACA 61.722 60.000 15.43 5.85 0.00 2.90
1929 2104 0.036388 AAAAGGCTACTAGCAGCGCA 60.036 50.000 11.47 0.00 44.75 6.09
1982 2157 5.927689 CAGCACAAAATATGGAGCAGAAAAA 59.072 36.000 0.00 0.00 36.85 1.94
1983 2158 5.472148 CAGCACAAAATATGGAGCAGAAAA 58.528 37.500 0.00 0.00 36.85 2.29
1984 2159 4.618927 GCAGCACAAAATATGGAGCAGAAA 60.619 41.667 0.00 0.00 36.85 2.52
1985 2160 3.119388 GCAGCACAAAATATGGAGCAGAA 60.119 43.478 0.00 0.00 36.85 3.02
1986 2161 2.424601 GCAGCACAAAATATGGAGCAGA 59.575 45.455 0.00 0.00 36.85 4.26
1987 2162 2.426024 AGCAGCACAAAATATGGAGCAG 59.574 45.455 0.00 0.00 36.85 4.24
1988 2163 2.164827 CAGCAGCACAAAATATGGAGCA 59.835 45.455 0.00 0.00 36.85 4.26
1989 2164 2.424601 TCAGCAGCACAAAATATGGAGC 59.575 45.455 0.00 0.00 35.24 4.70
1990 2165 4.707030 TTCAGCAGCACAAAATATGGAG 57.293 40.909 0.00 0.00 0.00 3.86
1991 2166 5.664294 AATTCAGCAGCACAAAATATGGA 57.336 34.783 0.00 0.00 0.00 3.41
1992 2167 6.148150 ACAAAATTCAGCAGCACAAAATATGG 59.852 34.615 0.00 0.00 0.00 2.74
1993 2168 7.124347 ACAAAATTCAGCAGCACAAAATATG 57.876 32.000 0.00 0.00 0.00 1.78
1994 2169 7.733402 AACAAAATTCAGCAGCACAAAATAT 57.267 28.000 0.00 0.00 0.00 1.28
1995 2170 7.551035 AAACAAAATTCAGCAGCACAAAATA 57.449 28.000 0.00 0.00 0.00 1.40
1996 2171 6.439675 AAACAAAATTCAGCAGCACAAAAT 57.560 29.167 0.00 0.00 0.00 1.82
1997 2172 5.876612 AAACAAAATTCAGCAGCACAAAA 57.123 30.435 0.00 0.00 0.00 2.44
1998 2173 5.523188 CCTAAACAAAATTCAGCAGCACAAA 59.477 36.000 0.00 0.00 0.00 2.83
1999 2174 5.049167 CCTAAACAAAATTCAGCAGCACAA 58.951 37.500 0.00 0.00 0.00 3.33
2000 2175 4.501229 CCCTAAACAAAATTCAGCAGCACA 60.501 41.667 0.00 0.00 0.00 4.57
2001 2176 3.989817 CCCTAAACAAAATTCAGCAGCAC 59.010 43.478 0.00 0.00 0.00 4.40
2002 2177 3.640967 ACCCTAAACAAAATTCAGCAGCA 59.359 39.130 0.00 0.00 0.00 4.41
2003 2178 4.257267 ACCCTAAACAAAATTCAGCAGC 57.743 40.909 0.00 0.00 0.00 5.25
2004 2179 8.831715 ATAAAACCCTAAACAAAATTCAGCAG 57.168 30.769 0.00 0.00 0.00 4.24
2005 2180 9.699703 GTATAAAACCCTAAACAAAATTCAGCA 57.300 29.630 0.00 0.00 0.00 4.41
2006 2181 9.699703 TGTATAAAACCCTAAACAAAATTCAGC 57.300 29.630 0.00 0.00 0.00 4.26
2019 2194 9.650714 TGCTAGAGACTATTGTATAAAACCCTA 57.349 33.333 0.00 0.00 0.00 3.53
2020 2195 8.548880 TGCTAGAGACTATTGTATAAAACCCT 57.451 34.615 0.00 0.00 0.00 4.34
2021 2196 8.639761 TCTGCTAGAGACTATTGTATAAAACCC 58.360 37.037 0.00 0.00 0.00 4.11
2028 2203 9.746457 TGTATGATCTGCTAGAGACTATTGTAT 57.254 33.333 0.00 0.00 31.75 2.29
2029 2204 9.004717 GTGTATGATCTGCTAGAGACTATTGTA 57.995 37.037 0.00 0.00 31.75 2.41
2030 2205 7.503902 TGTGTATGATCTGCTAGAGACTATTGT 59.496 37.037 0.00 0.00 31.75 2.71
2031 2206 7.880105 TGTGTATGATCTGCTAGAGACTATTG 58.120 38.462 0.00 0.00 31.75 1.90
2032 2207 8.648698 ATGTGTATGATCTGCTAGAGACTATT 57.351 34.615 0.00 0.00 31.75 1.73
2033 2208 9.173021 GTATGTGTATGATCTGCTAGAGACTAT 57.827 37.037 0.00 0.00 31.75 2.12
2034 2209 8.157476 TGTATGTGTATGATCTGCTAGAGACTA 58.843 37.037 0.00 0.00 31.75 2.59
2035 2210 7.001073 TGTATGTGTATGATCTGCTAGAGACT 58.999 38.462 0.00 0.00 31.75 3.24
2036 2211 7.208225 TGTATGTGTATGATCTGCTAGAGAC 57.792 40.000 0.00 0.00 31.75 3.36
2037 2212 7.823745 TTGTATGTGTATGATCTGCTAGAGA 57.176 36.000 0.00 0.00 34.25 3.10
2038 2213 9.138062 GATTTGTATGTGTATGATCTGCTAGAG 57.862 37.037 0.00 0.00 0.00 2.43
2039 2214 8.864087 AGATTTGTATGTGTATGATCTGCTAGA 58.136 33.333 0.00 0.00 0.00 2.43
2040 2215 8.923683 CAGATTTGTATGTGTATGATCTGCTAG 58.076 37.037 0.00 0.00 34.58 3.42
2041 2216 8.641541 TCAGATTTGTATGTGTATGATCTGCTA 58.358 33.333 0.00 0.00 39.05 3.49
2042 2217 7.503549 TCAGATTTGTATGTGTATGATCTGCT 58.496 34.615 0.00 0.00 39.05 4.24
2043 2218 7.719778 TCAGATTTGTATGTGTATGATCTGC 57.280 36.000 0.00 0.00 39.05 4.26
2044 2219 9.485206 TGATCAGATTTGTATGTGTATGATCTG 57.515 33.333 11.73 0.00 41.37 2.90
2054 2229 9.896645 GGGTATGATATGATCAGATTTGTATGT 57.103 33.333 3.97 0.00 43.53 2.29
2055 2230 9.895138 TGGGTATGATATGATCAGATTTGTATG 57.105 33.333 3.97 0.00 43.53 2.39
2058 2233 9.896645 GTATGGGTATGATATGATCAGATTTGT 57.103 33.333 3.97 0.00 43.53 2.83
2059 2234 9.895138 TGTATGGGTATGATATGATCAGATTTG 57.105 33.333 3.97 0.00 43.53 2.32
2072 2247 9.104713 TGATGAGACTATTTGTATGGGTATGAT 57.895 33.333 0.00 0.00 0.00 2.45
2073 2248 8.491045 TGATGAGACTATTTGTATGGGTATGA 57.509 34.615 0.00 0.00 0.00 2.15
2074 2249 9.559732 TTTGATGAGACTATTTGTATGGGTATG 57.440 33.333 0.00 0.00 0.00 2.39
2076 2251 9.778741 GATTTGATGAGACTATTTGTATGGGTA 57.221 33.333 0.00 0.00 0.00 3.69
2077 2252 7.442364 CGATTTGATGAGACTATTTGTATGGGT 59.558 37.037 0.00 0.00 0.00 4.51
2078 2253 7.657354 TCGATTTGATGAGACTATTTGTATGGG 59.343 37.037 0.00 0.00 0.00 4.00
2079 2254 8.593492 TCGATTTGATGAGACTATTTGTATGG 57.407 34.615 0.00 0.00 0.00 2.74
2081 2256 9.987272 TGATCGATTTGATGAGACTATTTGTAT 57.013 29.630 0.00 0.00 37.47 2.29
2082 2257 9.987272 ATGATCGATTTGATGAGACTATTTGTA 57.013 29.630 0.00 0.00 37.47 2.41
2083 2258 8.771766 CATGATCGATTTGATGAGACTATTTGT 58.228 33.333 0.00 0.00 37.47 2.83
2084 2259 8.771766 ACATGATCGATTTGATGAGACTATTTG 58.228 33.333 15.86 0.00 37.47 2.32
2085 2260 8.899427 ACATGATCGATTTGATGAGACTATTT 57.101 30.769 15.86 0.00 37.47 1.40
2086 2261 8.146412 TGACATGATCGATTTGATGAGACTATT 58.854 33.333 15.86 0.00 37.47 1.73
2087 2262 7.664758 TGACATGATCGATTTGATGAGACTAT 58.335 34.615 15.86 0.00 37.47 2.12
2088 2263 7.042797 TGACATGATCGATTTGATGAGACTA 57.957 36.000 15.86 0.83 37.47 2.59
2089 2264 5.910614 TGACATGATCGATTTGATGAGACT 58.089 37.500 15.86 0.00 37.47 3.24
2090 2265 6.423001 TGATGACATGATCGATTTGATGAGAC 59.577 38.462 15.86 9.44 37.47 3.36
2091 2266 6.518493 TGATGACATGATCGATTTGATGAGA 58.482 36.000 15.86 5.94 37.47 3.27
2092 2267 6.780706 TGATGACATGATCGATTTGATGAG 57.219 37.500 15.86 0.54 37.47 2.90
2093 2268 6.932400 TGATGATGACATGATCGATTTGATGA 59.068 34.615 15.86 0.00 35.54 2.92
2094 2269 7.129109 TGATGATGACATGATCGATTTGATG 57.871 36.000 14.16 12.00 35.54 3.07
2095 2270 7.923414 ATGATGATGACATGATCGATTTGAT 57.077 32.000 14.16 0.00 37.10 2.57
2096 2271 8.836268 TTATGATGATGACATGATCGATTTGA 57.164 30.769 14.16 0.00 36.82 2.69
2097 2272 9.704098 GATTATGATGATGACATGATCGATTTG 57.296 33.333 9.87 3.47 36.82 2.32
2098 2273 9.444600 TGATTATGATGATGACATGATCGATTT 57.555 29.630 9.87 0.00 40.88 2.17
2099 2274 9.614792 ATGATTATGATGATGACATGATCGATT 57.385 29.630 9.87 1.45 40.88 3.34
2100 2275 9.262358 GATGATTATGATGATGACATGATCGAT 57.738 33.333 9.87 0.00 40.88 3.59
2101 2276 8.255206 TGATGATTATGATGATGACATGATCGA 58.745 33.333 9.87 0.00 40.88 3.59
2102 2277 8.420374 TGATGATTATGATGATGACATGATCG 57.580 34.615 9.87 0.00 40.88 3.69
2104 2279 9.343539 GGATGATGATTATGATGATGACATGAT 57.656 33.333 0.00 0.00 36.82 2.45
2105 2280 8.325787 TGGATGATGATTATGATGATGACATGA 58.674 33.333 0.00 0.00 36.82 3.07
2106 2281 8.506168 TGGATGATGATTATGATGATGACATG 57.494 34.615 0.00 0.00 36.82 3.21
2107 2282 8.957466 GTTGGATGATGATTATGATGATGACAT 58.043 33.333 0.00 0.00 39.67 3.06
2108 2283 7.940137 TGTTGGATGATGATTATGATGATGACA 59.060 33.333 0.00 0.00 0.00 3.58
2109 2284 8.235226 GTGTTGGATGATGATTATGATGATGAC 58.765 37.037 0.00 0.00 0.00 3.06
2110 2285 7.940137 TGTGTTGGATGATGATTATGATGATGA 59.060 33.333 0.00 0.00 0.00 2.92
2111 2286 8.106247 TGTGTTGGATGATGATTATGATGATG 57.894 34.615 0.00 0.00 0.00 3.07
2112 2287 8.700439 TTGTGTTGGATGATGATTATGATGAT 57.300 30.769 0.00 0.00 0.00 2.45
2113 2288 8.522542 TTTGTGTTGGATGATGATTATGATGA 57.477 30.769 0.00 0.00 0.00 2.92
2114 2289 9.758651 ATTTTGTGTTGGATGATGATTATGATG 57.241 29.630 0.00 0.00 0.00 3.07
2115 2290 9.758651 CATTTTGTGTTGGATGATGATTATGAT 57.241 29.630 0.00 0.00 0.00 2.45
2116 2291 8.968969 TCATTTTGTGTTGGATGATGATTATGA 58.031 29.630 0.00 0.00 0.00 2.15
2117 2292 9.758651 ATCATTTTGTGTTGGATGATGATTATG 57.241 29.630 0.00 0.00 37.72 1.90
2124 2299 6.662234 AGAGACATCATTTTGTGTTGGATGAT 59.338 34.615 6.91 0.00 39.21 2.45
2125 2300 6.005823 AGAGACATCATTTTGTGTTGGATGA 58.994 36.000 6.91 0.00 38.87 2.92
2126 2301 6.263516 AGAGACATCATTTTGTGTTGGATG 57.736 37.500 0.00 0.00 40.78 3.51
2127 2302 5.122869 CGAGAGACATCATTTTGTGTTGGAT 59.877 40.000 0.00 0.00 32.86 3.41
2128 2303 4.452114 CGAGAGACATCATTTTGTGTTGGA 59.548 41.667 0.00 0.00 32.86 3.53
2129 2304 4.378770 CCGAGAGACATCATTTTGTGTTGG 60.379 45.833 0.00 0.00 32.86 3.77
2130 2305 4.715896 CCGAGAGACATCATTTTGTGTTG 58.284 43.478 0.00 0.00 34.40 3.33
2131 2306 3.189287 GCCGAGAGACATCATTTTGTGTT 59.811 43.478 0.00 0.00 0.00 3.32
2132 2307 2.744202 GCCGAGAGACATCATTTTGTGT 59.256 45.455 0.00 0.00 0.00 3.72
2133 2308 2.743664 TGCCGAGAGACATCATTTTGTG 59.256 45.455 0.00 0.00 0.00 3.33
2134 2309 3.057969 TGCCGAGAGACATCATTTTGT 57.942 42.857 0.00 0.00 0.00 2.83
2135 2310 3.624410 TGATGCCGAGAGACATCATTTTG 59.376 43.478 1.71 0.00 45.79 2.44
2136 2311 3.877559 TGATGCCGAGAGACATCATTTT 58.122 40.909 1.71 0.00 45.79 1.82
2137 2312 3.548745 TGATGCCGAGAGACATCATTT 57.451 42.857 1.71 0.00 45.79 2.32
2141 2316 2.668001 CGAGATGATGCCGAGAGACATC 60.668 54.545 0.00 0.00 42.46 3.06
2142 2317 1.269174 CGAGATGATGCCGAGAGACAT 59.731 52.381 0.00 0.00 0.00 3.06
2143 2318 0.665298 CGAGATGATGCCGAGAGACA 59.335 55.000 0.00 0.00 0.00 3.41
2144 2319 0.947960 TCGAGATGATGCCGAGAGAC 59.052 55.000 0.00 0.00 0.00 3.36
2145 2320 1.680338 TTCGAGATGATGCCGAGAGA 58.320 50.000 0.00 0.00 33.66 3.10
2146 2321 2.498807 TTTCGAGATGATGCCGAGAG 57.501 50.000 0.00 0.00 33.66 3.20
2147 2322 3.821033 TCTATTTCGAGATGATGCCGAGA 59.179 43.478 0.00 0.00 33.66 4.04
2148 2323 4.083057 TCTCTATTTCGAGATGATGCCGAG 60.083 45.833 0.00 0.00 35.23 4.63
2149 2324 3.821033 TCTCTATTTCGAGATGATGCCGA 59.179 43.478 0.00 0.00 35.23 5.54
2150 2325 4.166187 TCTCTATTTCGAGATGATGCCG 57.834 45.455 0.00 0.00 35.23 5.69
2159 2334 9.952188 TGTCATAACTTGTATCTCTATTTCGAG 57.048 33.333 0.00 0.00 0.00 4.04
2166 2341 8.560374 CGAGACATGTCATAACTTGTATCTCTA 58.440 37.037 27.02 0.00 43.88 2.43
2167 2342 7.283354 TCGAGACATGTCATAACTTGTATCTCT 59.717 37.037 27.02 0.61 43.88 3.10
2168 2343 7.418408 TCGAGACATGTCATAACTTGTATCTC 58.582 38.462 27.02 10.19 43.88 2.75
2169 2344 7.334844 TCGAGACATGTCATAACTTGTATCT 57.665 36.000 27.02 1.76 43.88 1.98
2170 2345 7.987268 TTCGAGACATGTCATAACTTGTATC 57.013 36.000 27.02 10.86 43.21 2.24
2171 2346 9.464714 GTATTCGAGACATGTCATAACTTGTAT 57.535 33.333 27.02 11.43 42.13 2.29
2172 2347 8.683615 AGTATTCGAGACATGTCATAACTTGTA 58.316 33.333 27.02 5.01 42.13 2.41
2173 2348 7.548097 AGTATTCGAGACATGTCATAACTTGT 58.452 34.615 27.02 4.07 44.06 3.16
2174 2349 7.993821 AGTATTCGAGACATGTCATAACTTG 57.006 36.000 27.02 10.38 36.78 3.16
2175 2350 9.517609 GTAAGTATTCGAGACATGTCATAACTT 57.482 33.333 27.02 23.60 0.00 2.66
2176 2351 8.683615 TGTAAGTATTCGAGACATGTCATAACT 58.316 33.333 27.02 16.71 0.00 2.24
2177 2352 8.851960 TGTAAGTATTCGAGACATGTCATAAC 57.148 34.615 27.02 14.97 0.00 1.89
2178 2353 9.297586 GTTGTAAGTATTCGAGACATGTCATAA 57.702 33.333 27.02 17.20 0.00 1.90
2179 2354 8.683615 AGTTGTAAGTATTCGAGACATGTCATA 58.316 33.333 27.02 13.17 0.00 2.15
2180 2355 7.548097 AGTTGTAAGTATTCGAGACATGTCAT 58.452 34.615 27.02 14.16 0.00 3.06
2181 2356 6.920817 AGTTGTAAGTATTCGAGACATGTCA 58.079 36.000 27.02 7.35 0.00 3.58
2182 2357 7.966753 TGTAGTTGTAAGTATTCGAGACATGTC 59.033 37.037 18.47 18.47 0.00 3.06
2183 2358 7.823665 TGTAGTTGTAAGTATTCGAGACATGT 58.176 34.615 0.00 0.00 0.00 3.21
2184 2359 8.858003 ATGTAGTTGTAAGTATTCGAGACATG 57.142 34.615 0.00 0.00 0.00 3.21
2185 2360 9.302345 CAATGTAGTTGTAAGTATTCGAGACAT 57.698 33.333 2.79 0.00 33.01 3.06
2186 2361 8.683550 CAATGTAGTTGTAAGTATTCGAGACA 57.316 34.615 2.79 0.00 33.01 3.41
2201 2376 8.267620 TGTTTAGATGGATGACAATGTAGTTG 57.732 34.615 0.00 0.00 43.64 3.16
2202 2377 8.862325 TTGTTTAGATGGATGACAATGTAGTT 57.138 30.769 0.00 0.00 0.00 2.24
2203 2378 9.113838 GATTGTTTAGATGGATGACAATGTAGT 57.886 33.333 4.91 0.00 40.05 2.73
2204 2379 9.112725 TGATTGTTTAGATGGATGACAATGTAG 57.887 33.333 4.91 0.00 40.05 2.74
2205 2380 8.892723 GTGATTGTTTAGATGGATGACAATGTA 58.107 33.333 4.91 0.00 40.05 2.29
2206 2381 7.394077 TGTGATTGTTTAGATGGATGACAATGT 59.606 33.333 4.91 0.00 40.05 2.71
2207 2382 7.764331 TGTGATTGTTTAGATGGATGACAATG 58.236 34.615 4.91 0.00 40.05 2.82
2208 2383 7.943079 TGTGATTGTTTAGATGGATGACAAT 57.057 32.000 0.00 0.00 41.96 2.71
2209 2384 7.943079 ATGTGATTGTTTAGATGGATGACAA 57.057 32.000 0.00 0.00 35.04 3.18
2210 2385 8.485392 TCTATGTGATTGTTTAGATGGATGACA 58.515 33.333 0.00 0.00 0.00 3.58
2211 2386 8.768955 GTCTATGTGATTGTTTAGATGGATGAC 58.231 37.037 0.00 0.00 0.00 3.06
2212 2387 7.653311 CGTCTATGTGATTGTTTAGATGGATGA 59.347 37.037 0.00 0.00 0.00 2.92
2213 2388 7.653311 TCGTCTATGTGATTGTTTAGATGGATG 59.347 37.037 0.00 0.00 31.53 3.51
2214 2389 7.726216 TCGTCTATGTGATTGTTTAGATGGAT 58.274 34.615 0.00 0.00 31.53 3.41
2215 2390 7.068226 TCTCGTCTATGTGATTGTTTAGATGGA 59.932 37.037 0.00 0.00 31.53 3.41
2216 2391 7.203218 TCTCGTCTATGTGATTGTTTAGATGG 58.797 38.462 0.00 0.00 31.53 3.51
2217 2392 8.634475 TTCTCGTCTATGTGATTGTTTAGATG 57.366 34.615 0.00 0.00 0.00 2.90
2218 2393 8.687242 TCTTCTCGTCTATGTGATTGTTTAGAT 58.313 33.333 0.00 0.00 0.00 1.98
2219 2394 8.051901 TCTTCTCGTCTATGTGATTGTTTAGA 57.948 34.615 0.00 0.00 0.00 2.10
2220 2395 7.043722 GCTCTTCTCGTCTATGTGATTGTTTAG 60.044 40.741 0.00 0.00 0.00 1.85
2221 2396 6.752351 GCTCTTCTCGTCTATGTGATTGTTTA 59.248 38.462 0.00 0.00 0.00 2.01
2222 2397 5.578727 GCTCTTCTCGTCTATGTGATTGTTT 59.421 40.000 0.00 0.00 0.00 2.83
2223 2398 5.105554 AGCTCTTCTCGTCTATGTGATTGTT 60.106 40.000 0.00 0.00 0.00 2.83
2224 2399 4.400884 AGCTCTTCTCGTCTATGTGATTGT 59.599 41.667 0.00 0.00 0.00 2.71
2225 2400 4.930963 AGCTCTTCTCGTCTATGTGATTG 58.069 43.478 0.00 0.00 0.00 2.67
2226 2401 6.488344 TGATAGCTCTTCTCGTCTATGTGATT 59.512 38.462 0.00 0.00 0.00 2.57
2227 2402 6.000840 TGATAGCTCTTCTCGTCTATGTGAT 58.999 40.000 0.00 0.00 0.00 3.06
2228 2403 5.237561 GTGATAGCTCTTCTCGTCTATGTGA 59.762 44.000 0.00 0.00 0.00 3.58
2229 2404 5.238432 AGTGATAGCTCTTCTCGTCTATGTG 59.762 44.000 0.00 0.00 0.00 3.21
2230 2405 5.373222 AGTGATAGCTCTTCTCGTCTATGT 58.627 41.667 0.00 0.00 0.00 2.29
2231 2406 5.940192 AGTGATAGCTCTTCTCGTCTATG 57.060 43.478 0.00 0.00 0.00 2.23
2232 2407 7.390823 TCATAGTGATAGCTCTTCTCGTCTAT 58.609 38.462 0.00 0.00 0.00 1.98
2233 2408 6.760291 TCATAGTGATAGCTCTTCTCGTCTA 58.240 40.000 0.00 0.00 0.00 2.59
2234 2409 5.616270 TCATAGTGATAGCTCTTCTCGTCT 58.384 41.667 0.00 0.00 0.00 4.18
2235 2410 5.468746 ACTCATAGTGATAGCTCTTCTCGTC 59.531 44.000 0.00 0.00 0.00 4.20
2236 2411 5.373222 ACTCATAGTGATAGCTCTTCTCGT 58.627 41.667 0.00 0.00 0.00 4.18
2237 2412 5.940192 ACTCATAGTGATAGCTCTTCTCG 57.060 43.478 0.00 0.00 0.00 4.04
2251 2426 5.395103 GCATGGTTTCTCTCTCACTCATAGT 60.395 44.000 0.00 0.00 0.00 2.12
2252 2427 5.049167 GCATGGTTTCTCTCTCACTCATAG 58.951 45.833 0.00 0.00 0.00 2.23
2253 2428 4.467438 TGCATGGTTTCTCTCTCACTCATA 59.533 41.667 0.00 0.00 0.00 2.15
2254 2429 3.262660 TGCATGGTTTCTCTCTCACTCAT 59.737 43.478 0.00 0.00 0.00 2.90
2255 2430 2.634453 TGCATGGTTTCTCTCTCACTCA 59.366 45.455 0.00 0.00 0.00 3.41
2256 2431 3.260740 CTGCATGGTTTCTCTCTCACTC 58.739 50.000 0.00 0.00 0.00 3.51
2257 2432 2.636893 ACTGCATGGTTTCTCTCTCACT 59.363 45.455 0.00 0.00 0.00 3.41
2258 2433 3.051081 ACTGCATGGTTTCTCTCTCAC 57.949 47.619 0.00 0.00 0.00 3.51
2259 2434 3.578282 TGTACTGCATGGTTTCTCTCTCA 59.422 43.478 0.00 0.00 0.00 3.27
2260 2435 4.193826 TGTACTGCATGGTTTCTCTCTC 57.806 45.455 0.00 0.00 0.00 3.20
2261 2436 4.833478 ATGTACTGCATGGTTTCTCTCT 57.167 40.909 0.00 0.00 36.26 3.10
2272 2447 1.524621 GCCGCCTCATGTACTGCAT 60.525 57.895 0.00 0.00 38.60 3.96
2273 2448 2.125147 GCCGCCTCATGTACTGCA 60.125 61.111 0.00 0.00 0.00 4.41
2274 2449 3.264897 CGCCGCCTCATGTACTGC 61.265 66.667 0.00 0.00 0.00 4.40
2275 2450 2.586079 CCGCCGCCTCATGTACTG 60.586 66.667 0.00 0.00 0.00 2.74
2276 2451 1.324740 TAACCGCCGCCTCATGTACT 61.325 55.000 0.00 0.00 0.00 2.73
2277 2452 0.249741 ATAACCGCCGCCTCATGTAC 60.250 55.000 0.00 0.00 0.00 2.90
2278 2453 0.249699 CATAACCGCCGCCTCATGTA 60.250 55.000 0.00 0.00 0.00 2.29
2279 2454 1.523711 CATAACCGCCGCCTCATGT 60.524 57.895 0.00 0.00 0.00 3.21
2280 2455 0.603707 ATCATAACCGCCGCCTCATG 60.604 55.000 0.00 0.00 0.00 3.07
2281 2456 0.108585 AATCATAACCGCCGCCTCAT 59.891 50.000 0.00 0.00 0.00 2.90
2282 2457 0.531974 GAATCATAACCGCCGCCTCA 60.532 55.000 0.00 0.00 0.00 3.86
2283 2458 1.228657 GGAATCATAACCGCCGCCTC 61.229 60.000 0.00 0.00 0.00 4.70
2284 2459 1.227853 GGAATCATAACCGCCGCCT 60.228 57.895 0.00 0.00 0.00 5.52
2285 2460 1.227853 AGGAATCATAACCGCCGCC 60.228 57.895 0.00 0.00 0.00 6.13
2286 2461 0.249911 AGAGGAATCATAACCGCCGC 60.250 55.000 0.00 0.00 0.00 6.53
2287 2462 1.341531 AGAGAGGAATCATAACCGCCG 59.658 52.381 0.00 0.00 0.00 6.46
2288 2463 2.608261 CGAGAGAGGAATCATAACCGCC 60.608 54.545 0.00 0.00 0.00 6.13
2289 2464 2.667137 CGAGAGAGGAATCATAACCGC 58.333 52.381 0.00 0.00 0.00 5.68
2290 2465 2.667137 GCGAGAGAGGAATCATAACCG 58.333 52.381 0.00 0.00 0.00 4.44
2291 2466 2.667137 CGCGAGAGAGGAATCATAACC 58.333 52.381 0.00 0.00 0.00 2.85
2292 2467 2.055100 GCGCGAGAGAGGAATCATAAC 58.945 52.381 12.10 0.00 0.00 1.89
2293 2468 1.957177 AGCGCGAGAGAGGAATCATAA 59.043 47.619 12.10 0.00 0.00 1.90
2294 2469 1.610363 AGCGCGAGAGAGGAATCATA 58.390 50.000 12.10 0.00 0.00 2.15
2295 2470 1.539388 CTAGCGCGAGAGAGGAATCAT 59.461 52.381 12.10 0.00 0.00 2.45
2296 2471 0.947960 CTAGCGCGAGAGAGGAATCA 59.052 55.000 12.10 0.00 0.00 2.57
2297 2472 0.948678 ACTAGCGCGAGAGAGGAATC 59.051 55.000 24.88 0.00 0.00 2.52
2298 2473 0.665835 CACTAGCGCGAGAGAGGAAT 59.334 55.000 24.88 0.00 0.00 3.01
2299 2474 0.677098 ACACTAGCGCGAGAGAGGAA 60.677 55.000 24.88 0.00 0.00 3.36
2300 2475 1.078356 ACACTAGCGCGAGAGAGGA 60.078 57.895 24.88 0.00 0.00 3.71
2301 2476 1.063327 CACACTAGCGCGAGAGAGG 59.937 63.158 24.88 12.17 0.00 3.69
2302 2477 0.448197 TTCACACTAGCGCGAGAGAG 59.552 55.000 24.88 14.78 0.00 3.20
2303 2478 0.168348 GTTCACACTAGCGCGAGAGA 59.832 55.000 24.88 14.92 0.00 3.10
2304 2479 0.798771 GGTTCACACTAGCGCGAGAG 60.799 60.000 24.88 18.65 0.00 3.20
2305 2480 1.211969 GGTTCACACTAGCGCGAGA 59.788 57.895 24.88 1.61 0.00 4.04
2306 2481 0.798771 GAGGTTCACACTAGCGCGAG 60.799 60.000 16.50 16.50 0.00 5.03
2307 2482 1.211969 GAGGTTCACACTAGCGCGA 59.788 57.895 12.10 0.00 0.00 5.87
2308 2483 0.666274 TTGAGGTTCACACTAGCGCG 60.666 55.000 0.00 0.00 0.00 6.86
2309 2484 1.071605 CTTGAGGTTCACACTAGCGC 58.928 55.000 0.00 0.00 0.00 5.92
2310 2485 2.440539 ACTTGAGGTTCACACTAGCG 57.559 50.000 0.00 0.00 0.00 4.26
2311 2486 4.884247 AGTTACTTGAGGTTCACACTAGC 58.116 43.478 0.00 0.00 0.00 3.42
2312 2487 6.071840 AGCTAGTTACTTGAGGTTCACACTAG 60.072 42.308 0.00 0.00 0.00 2.57
2313 2488 5.773680 AGCTAGTTACTTGAGGTTCACACTA 59.226 40.000 0.00 0.00 0.00 2.74
2314 2489 4.589374 AGCTAGTTACTTGAGGTTCACACT 59.411 41.667 0.00 0.00 0.00 3.55
2315 2490 4.884247 AGCTAGTTACTTGAGGTTCACAC 58.116 43.478 0.00 0.00 0.00 3.82
2316 2491 5.304614 AGAAGCTAGTTACTTGAGGTTCACA 59.695 40.000 21.55 0.00 45.68 3.58
2317 2492 5.635700 CAGAAGCTAGTTACTTGAGGTTCAC 59.364 44.000 21.55 4.58 45.68 3.18
2318 2493 5.784177 CAGAAGCTAGTTACTTGAGGTTCA 58.216 41.667 21.55 0.00 45.68 3.18
2319 2494 4.627900 GCAGAAGCTAGTTACTTGAGGTTC 59.372 45.833 15.35 15.35 44.33 3.62
2320 2495 4.570930 GCAGAAGCTAGTTACTTGAGGTT 58.429 43.478 0.00 0.00 37.91 3.50
2321 2496 4.195225 GCAGAAGCTAGTTACTTGAGGT 57.805 45.455 0.00 0.00 37.91 3.85
2335 2510 1.521580 AGCAGACAAGAAGCAGAAGC 58.478 50.000 0.00 0.00 42.56 3.86
2336 2511 4.036027 TCAAAAGCAGACAAGAAGCAGAAG 59.964 41.667 0.00 0.00 0.00 2.85
2337 2512 3.947196 TCAAAAGCAGACAAGAAGCAGAA 59.053 39.130 0.00 0.00 0.00 3.02
2338 2513 3.544684 TCAAAAGCAGACAAGAAGCAGA 58.455 40.909 0.00 0.00 0.00 4.26
2339 2514 3.976793 TCAAAAGCAGACAAGAAGCAG 57.023 42.857 0.00 0.00 0.00 4.24
2340 2515 4.297299 CTTCAAAAGCAGACAAGAAGCA 57.703 40.909 0.00 0.00 0.00 3.91
2377 2552 2.943978 AAGTGGAGCGGTTCTCGGG 61.944 63.158 0.00 0.00 42.82 5.14
2378 2553 2.657237 AAGTGGAGCGGTTCTCGG 59.343 61.111 0.00 0.00 42.82 4.63


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.