Multiple sequence alignment - TraesCS6B01G037200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G037200 chr6B 100.000 3977 0 0 1487 5463 21788731 21784755 0.000000e+00 7345.0
1 TraesCS6B01G037200 chr6B 100.000 1119 0 0 1 1119 21790217 21789099 0.000000e+00 2067.0
2 TraesCS6B01G037200 chr6B 85.771 253 32 3 2 252 21789975 21789725 1.170000e-66 265.0
3 TraesCS6B01G037200 chr6B 85.771 253 32 3 243 493 21790216 21789966 1.170000e-66 265.0
4 TraesCS6B01G037200 chr6B 96.970 33 0 1 4774 4806 21785383 21785352 3.000000e-03 54.7
5 TraesCS6B01G037200 chr6B 96.970 33 0 1 4835 4866 21785444 21785412 3.000000e-03 54.7
6 TraesCS6B01G037200 chr6D 92.948 3290 168 31 1487 4729 11894007 11890735 0.000000e+00 4732.0
7 TraesCS6B01G037200 chr6D 90.594 893 63 13 236 1111 11895278 11894390 0.000000e+00 1164.0
8 TraesCS6B01G037200 chr6D 88.330 557 42 14 4918 5462 11890358 11889813 0.000000e+00 647.0
9 TraesCS6B01G037200 chr6D 87.109 256 28 3 1 253 11895273 11895020 8.960000e-73 285.0
10 TraesCS6B01G037200 chr6D 96.429 56 2 0 4834 4889 11890499 11890444 5.830000e-15 93.5
11 TraesCS6B01G037200 chr6A 92.690 2736 147 18 1487 4182 13386227 13383505 0.000000e+00 3895.0
12 TraesCS6B01G037200 chr6A 86.873 777 47 25 390 1119 13387017 13386249 0.000000e+00 819.0
13 TraesCS6B01G037200 chr6A 89.068 622 14 14 4177 4774 13383300 13382709 0.000000e+00 723.0
14 TraesCS6B01G037200 chr6A 89.255 577 46 9 4894 5462 13382387 13381819 0.000000e+00 708.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G037200 chr6B 21784755 21790217 5462 True 1675.233333 7345 94.2470 1 5463 6 chr6B.!!$R1 5462
1 TraesCS6B01G037200 chr6D 11889813 11895278 5465 True 1384.300000 4732 91.0820 1 5462 5 chr6D.!!$R1 5461
2 TraesCS6B01G037200 chr6A 13381819 13387017 5198 True 1536.250000 3895 89.4715 390 5462 4 chr6A.!!$R1 5072

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
248 256 0.324285 GATGCAAAATGCCCCACCAA 59.676 50.0 0.00 0.00 44.23 3.67 F
2058 2125 0.402504 TCTAGATCTCCCTCTCCGCC 59.597 60.0 0.00 0.00 0.00 6.13 F
2169 2237 0.101219 GGCGGAATTGGCATTGAGAC 59.899 55.0 0.00 0.00 0.00 3.36 F
2249 2320 0.254178 CAATGAGCAGGTACCTGGCT 59.746 55.0 36.91 32.14 43.77 4.75 F
3059 3130 0.308993 AGCTGTTTGAAGAAGCACGC 59.691 50.0 4.38 0.00 39.47 5.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2150 2217 0.101219 GTCTCAATGCCAATTCCGCC 59.899 55.0 0.00 0.00 0.00 6.13 R
2924 2995 0.671251 TCAATTTGGAAACCGCGCTT 59.329 45.0 5.56 0.00 0.00 4.68 R
3059 3130 0.814457 ACTCCTGCTCTAGAACTGCG 59.186 55.0 0.00 0.00 0.00 5.18 R
4202 4517 1.051008 TCCACCCTGATGGATCATCG 58.949 55.0 0.00 0.00 44.14 3.84 R
4963 5544 0.603707 TCCTAAGCTGCCGCATATGC 60.604 55.0 18.08 18.08 39.10 3.14 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 33 2.507407 TAATGGCAGGAGTGGAAACC 57.493 50.000 0.00 0.00 0.00 3.27
40 46 5.338381 GGAGTGGAAACCTCTATCAACATGA 60.338 44.000 0.00 0.00 0.00 3.07
43 49 7.275920 AGTGGAAACCTCTATCAACATGATAC 58.724 38.462 0.00 0.00 38.26 2.24
44 50 6.201044 GTGGAAACCTCTATCAACATGATACG 59.799 42.308 0.00 0.00 38.26 3.06
50 56 5.755375 CCTCTATCAACATGATACGCAACTT 59.245 40.000 0.00 0.00 38.26 2.66
69 75 8.064814 CGCAACTTAGATATAAAGGCTTCTTTC 58.935 37.037 0.00 0.00 40.75 2.62
70 76 8.346300 GCAACTTAGATATAAAGGCTTCTTTCC 58.654 37.037 0.00 0.00 40.75 3.13
71 77 9.620259 CAACTTAGATATAAAGGCTTCTTTCCT 57.380 33.333 0.00 0.00 40.75 3.36
73 79 9.620259 ACTTAGATATAAAGGCTTCTTTCCTTG 57.380 33.333 0.00 0.00 42.75 3.61
75 81 6.667661 AGATATAAAGGCTTCTTTCCTTGCT 58.332 36.000 0.00 0.00 42.75 3.91
77 83 2.664402 AAGGCTTCTTTCCTTGCTCA 57.336 45.000 0.00 0.00 42.03 4.26
79 85 4.307032 AAGGCTTCTTTCCTTGCTCATA 57.693 40.909 0.00 0.00 42.03 2.15
80 86 3.883669 AGGCTTCTTTCCTTGCTCATAG 58.116 45.455 0.00 0.00 0.00 2.23
144 152 3.189287 ACTCGGAAACTTAGCATTGCAAG 59.811 43.478 11.91 13.84 0.00 4.01
147 155 4.458989 TCGGAAACTTAGCATTGCAAGAAT 59.541 37.500 20.35 12.02 0.00 2.40
161 169 9.759259 GCATTGCAAGAATAATTAAAAGTTTCC 57.241 29.630 4.94 0.00 0.00 3.13
164 172 8.532977 TGCAAGAATAATTAAAAGTTTCCAGC 57.467 30.769 0.00 0.00 0.00 4.85
165 173 8.147058 TGCAAGAATAATTAAAAGTTTCCAGCA 58.853 29.630 7.86 7.86 0.00 4.41
166 174 8.650714 GCAAGAATAATTAAAAGTTTCCAGCAG 58.349 33.333 0.00 0.00 0.00 4.24
167 175 9.143631 CAAGAATAATTAAAAGTTTCCAGCAGG 57.856 33.333 0.00 0.00 0.00 4.85
168 176 7.840931 AGAATAATTAAAAGTTTCCAGCAGGG 58.159 34.615 0.00 0.00 34.83 4.45
169 177 4.890158 AATTAAAAGTTTCCAGCAGGGG 57.110 40.909 0.00 0.00 37.22 4.79
170 178 1.627864 TAAAAGTTTCCAGCAGGGGC 58.372 50.000 0.00 0.00 41.61 5.80
171 179 0.398381 AAAAGTTTCCAGCAGGGGCA 60.398 50.000 0.00 0.00 44.61 5.36
172 180 0.829182 AAAGTTTCCAGCAGGGGCAG 60.829 55.000 0.00 0.00 44.61 4.85
174 182 3.185203 TTTCCAGCAGGGGCAGGT 61.185 61.111 0.00 0.00 46.14 4.00
175 183 1.850289 TTTCCAGCAGGGGCAGGTA 60.850 57.895 0.00 0.00 46.14 3.08
176 184 1.214305 TTTCCAGCAGGGGCAGGTAT 61.214 55.000 0.00 0.00 46.14 2.73
177 185 1.925285 TTCCAGCAGGGGCAGGTATG 61.925 60.000 0.00 0.00 46.14 2.39
190 198 2.863809 CAGGTATGCCCCTAACATTCC 58.136 52.381 0.00 0.00 35.75 3.01
191 199 2.174639 CAGGTATGCCCCTAACATTCCA 59.825 50.000 0.00 0.00 37.41 3.53
192 200 2.856231 AGGTATGCCCCTAACATTCCAA 59.144 45.455 0.00 0.00 37.41 3.53
193 201 3.270960 AGGTATGCCCCTAACATTCCAAA 59.729 43.478 0.00 0.00 37.41 3.28
194 202 4.027437 GGTATGCCCCTAACATTCCAAAA 58.973 43.478 0.00 0.00 35.63 2.44
195 203 4.468153 GGTATGCCCCTAACATTCCAAAAA 59.532 41.667 0.00 0.00 35.63 1.94
218 226 9.651718 AAAAAGAGCATTCGATAATATTTCGTC 57.348 29.630 15.04 8.50 37.82 4.20
219 227 8.594881 AAAGAGCATTCGATAATATTTCGTCT 57.405 30.769 15.04 9.93 37.82 4.18
220 228 9.692749 AAAGAGCATTCGATAATATTTCGTCTA 57.307 29.630 15.04 7.04 37.82 2.59
221 229 9.862371 AAGAGCATTCGATAATATTTCGTCTAT 57.138 29.630 15.04 8.33 37.82 1.98
222 230 9.862371 AGAGCATTCGATAATATTTCGTCTATT 57.138 29.630 15.04 0.00 37.82 1.73
236 244 8.948631 ATTTCGTCTATTAGAGAAGATGCAAA 57.051 30.769 0.00 0.00 41.56 3.68
237 245 8.771920 TTTCGTCTATTAGAGAAGATGCAAAA 57.228 30.769 0.00 0.00 41.56 2.44
238 246 8.948631 TTCGTCTATTAGAGAAGATGCAAAAT 57.051 30.769 0.00 0.00 41.56 1.82
239 247 8.357796 TCGTCTATTAGAGAAGATGCAAAATG 57.642 34.615 0.00 0.00 37.71 2.32
240 248 7.042456 TCGTCTATTAGAGAAGATGCAAAATGC 60.042 37.037 0.00 0.00 39.56 3.56
241 249 7.358830 GTCTATTAGAGAAGATGCAAAATGCC 58.641 38.462 0.00 0.00 38.17 4.40
242 250 4.989279 TTAGAGAAGATGCAAAATGCCC 57.011 40.909 0.00 0.00 44.23 5.36
243 251 2.105766 AGAGAAGATGCAAAATGCCCC 58.894 47.619 0.00 0.00 44.23 5.80
244 252 1.826720 GAGAAGATGCAAAATGCCCCA 59.173 47.619 0.00 0.00 44.23 4.96
245 253 1.551883 AGAAGATGCAAAATGCCCCAC 59.448 47.619 0.00 0.00 44.23 4.61
246 254 0.614812 AAGATGCAAAATGCCCCACC 59.385 50.000 0.00 0.00 44.23 4.61
247 255 0.544833 AGATGCAAAATGCCCCACCA 60.545 50.000 0.00 0.00 44.23 4.17
248 256 0.324285 GATGCAAAATGCCCCACCAA 59.676 50.000 0.00 0.00 44.23 3.67
249 257 0.769873 ATGCAAAATGCCCCACCAAA 59.230 45.000 0.00 0.00 44.23 3.28
250 258 0.548031 TGCAAAATGCCCCACCAAAA 59.452 45.000 0.00 0.00 44.23 2.44
251 259 1.064463 TGCAAAATGCCCCACCAAAAA 60.064 42.857 0.00 0.00 44.23 1.94
252 260 1.608109 GCAAAATGCCCCACCAAAAAG 59.392 47.619 0.00 0.00 37.42 2.27
253 261 2.228925 CAAAATGCCCCACCAAAAAGG 58.771 47.619 0.00 0.00 45.67 3.11
254 262 0.770499 AAATGCCCCACCAAAAAGGG 59.230 50.000 0.00 0.00 43.89 3.95
257 265 3.470433 CCCCACCAAAAAGGGCAG 58.530 61.111 0.00 0.00 44.06 4.85
258 266 1.459348 CCCCACCAAAAAGGGCAGT 60.459 57.895 0.00 0.00 44.06 4.40
259 267 1.747774 CCCACCAAAAAGGGCAGTG 59.252 57.895 0.00 0.00 43.89 3.66
260 268 1.747774 CCACCAAAAAGGGCAGTGG 59.252 57.895 0.00 0.00 43.89 4.00
261 269 1.048160 CCACCAAAAAGGGCAGTGGT 61.048 55.000 0.00 0.00 45.32 4.16
262 270 2.515288 ACCAAAAAGGGCAGTGGTG 58.485 52.632 0.00 0.00 42.79 4.17
263 271 1.048160 ACCAAAAAGGGCAGTGGTGG 61.048 55.000 0.00 0.00 42.79 4.61
264 272 0.758685 CCAAAAAGGGCAGTGGTGGA 60.759 55.000 0.00 0.00 0.00 4.02
265 273 1.118838 CAAAAAGGGCAGTGGTGGAA 58.881 50.000 0.00 0.00 0.00 3.53
266 274 1.484240 CAAAAAGGGCAGTGGTGGAAA 59.516 47.619 0.00 0.00 0.00 3.13
267 275 1.119684 AAAAGGGCAGTGGTGGAAAC 58.880 50.000 0.00 0.00 0.00 2.78
268 276 0.759060 AAAGGGCAGTGGTGGAAACC 60.759 55.000 0.00 0.00 0.00 3.27
269 277 1.655114 AAGGGCAGTGGTGGAAACCT 61.655 55.000 0.00 0.00 0.00 3.50
270 278 1.603739 GGGCAGTGGTGGAAACCTC 60.604 63.158 0.00 0.00 0.00 3.85
271 279 1.456287 GGCAGTGGTGGAAACCTCT 59.544 57.895 0.00 0.00 34.28 3.69
274 282 1.884235 CAGTGGTGGAAACCTCTGTC 58.116 55.000 15.53 0.00 42.95 3.51
275 283 1.140852 CAGTGGTGGAAACCTCTGTCA 59.859 52.381 15.53 0.00 42.95 3.58
276 284 1.843851 AGTGGTGGAAACCTCTGTCAA 59.156 47.619 0.00 0.00 32.93 3.18
277 285 2.443255 AGTGGTGGAAACCTCTGTCAAT 59.557 45.455 0.00 0.00 32.93 2.57
278 286 3.650942 AGTGGTGGAAACCTCTGTCAATA 59.349 43.478 0.00 0.00 32.93 1.90
279 287 4.289672 AGTGGTGGAAACCTCTGTCAATAT 59.710 41.667 0.00 0.00 32.93 1.28
280 288 4.396166 GTGGTGGAAACCTCTGTCAATATG 59.604 45.833 0.00 0.00 0.00 1.78
281 289 3.378427 GGTGGAAACCTCTGTCAATATGC 59.622 47.826 0.00 0.00 0.00 3.14
282 290 4.265073 GTGGAAACCTCTGTCAATATGCT 58.735 43.478 0.00 0.00 0.00 3.79
283 291 4.095483 GTGGAAACCTCTGTCAATATGCTG 59.905 45.833 0.00 0.00 0.00 4.41
284 292 3.065925 GGAAACCTCTGTCAATATGCTGC 59.934 47.826 0.00 0.00 0.00 5.25
285 293 3.354948 AACCTCTGTCAATATGCTGCA 57.645 42.857 4.13 4.13 0.00 4.41
286 294 2.636830 ACCTCTGTCAATATGCTGCAC 58.363 47.619 3.57 0.00 0.00 4.57
287 295 2.026915 ACCTCTGTCAATATGCTGCACA 60.027 45.455 3.57 0.00 0.00 4.57
288 296 3.011818 CCTCTGTCAATATGCTGCACAA 58.988 45.455 3.57 0.00 0.00 3.33
289 297 3.181503 CCTCTGTCAATATGCTGCACAAC 60.182 47.826 3.57 0.00 0.00 3.32
290 298 3.678289 TCTGTCAATATGCTGCACAACT 58.322 40.909 3.57 0.00 0.00 3.16
291 299 3.686241 TCTGTCAATATGCTGCACAACTC 59.314 43.478 3.57 0.00 0.00 3.01
292 300 3.678289 TGTCAATATGCTGCACAACTCT 58.322 40.909 3.57 0.00 0.00 3.24
293 301 3.437741 TGTCAATATGCTGCACAACTCTG 59.562 43.478 3.57 0.00 0.00 3.35
294 302 3.686241 GTCAATATGCTGCACAACTCTGA 59.314 43.478 3.57 0.00 0.00 3.27
295 303 4.334759 GTCAATATGCTGCACAACTCTGAT 59.665 41.667 3.57 0.00 0.00 2.90
296 304 5.525012 GTCAATATGCTGCACAACTCTGATA 59.475 40.000 3.57 0.00 0.00 2.15
297 305 6.204301 GTCAATATGCTGCACAACTCTGATAT 59.796 38.462 3.57 0.00 0.00 1.63
298 306 6.204108 TCAATATGCTGCACAACTCTGATATG 59.796 38.462 3.57 0.00 0.00 1.78
299 307 3.615224 TGCTGCACAACTCTGATATGA 57.385 42.857 0.00 0.00 0.00 2.15
300 308 3.941573 TGCTGCACAACTCTGATATGAA 58.058 40.909 0.00 0.00 0.00 2.57
301 309 3.937079 TGCTGCACAACTCTGATATGAAG 59.063 43.478 0.00 0.00 0.00 3.02
302 310 3.311871 GCTGCACAACTCTGATATGAAGG 59.688 47.826 0.00 0.00 0.00 3.46
303 311 3.273434 TGCACAACTCTGATATGAAGGC 58.727 45.455 0.00 0.00 0.00 4.35
304 312 3.054875 TGCACAACTCTGATATGAAGGCT 60.055 43.478 0.00 0.00 0.00 4.58
305 313 3.944015 GCACAACTCTGATATGAAGGCTT 59.056 43.478 0.00 0.00 0.00 4.35
306 314 5.118990 GCACAACTCTGATATGAAGGCTTA 58.881 41.667 0.00 0.00 0.00 3.09
307 315 5.762218 GCACAACTCTGATATGAAGGCTTAT 59.238 40.000 0.00 0.00 0.00 1.73
308 316 6.261826 GCACAACTCTGATATGAAGGCTTATT 59.738 38.462 0.00 0.00 0.00 1.40
309 317 7.201767 GCACAACTCTGATATGAAGGCTTATTT 60.202 37.037 0.00 0.00 0.00 1.40
310 318 8.680903 CACAACTCTGATATGAAGGCTTATTTT 58.319 33.333 0.00 0.00 0.00 1.82
311 319 9.247861 ACAACTCTGATATGAAGGCTTATTTTT 57.752 29.630 0.00 0.00 0.00 1.94
312 320 9.727627 CAACTCTGATATGAAGGCTTATTTTTC 57.272 33.333 0.00 0.00 0.00 2.29
313 321 8.457238 ACTCTGATATGAAGGCTTATTTTTCC 57.543 34.615 0.00 0.00 0.00 3.13
314 322 8.277918 ACTCTGATATGAAGGCTTATTTTTCCT 58.722 33.333 0.00 0.00 0.00 3.36
315 323 9.129532 CTCTGATATGAAGGCTTATTTTTCCTT 57.870 33.333 0.00 0.00 42.47 3.36
321 329 6.782082 GAAGGCTTATTTTTCCTTCCTCAT 57.218 37.500 0.00 0.00 46.23 2.90
322 330 7.881775 GAAGGCTTATTTTTCCTTCCTCATA 57.118 36.000 0.00 0.00 46.23 2.15
323 331 8.293699 GAAGGCTTATTTTTCCTTCCTCATAA 57.706 34.615 0.00 0.00 46.23 1.90
324 332 7.888250 AGGCTTATTTTTCCTTCCTCATAAG 57.112 36.000 0.00 0.00 0.00 1.73
325 333 6.836007 AGGCTTATTTTTCCTTCCTCATAAGG 59.164 38.462 0.00 0.00 46.35 2.69
326 334 6.607600 GGCTTATTTTTCCTTCCTCATAAGGT 59.392 38.462 2.76 0.00 45.37 3.50
327 335 7.416777 GGCTTATTTTTCCTTCCTCATAAGGTG 60.417 40.741 2.76 0.00 45.37 4.00
328 336 7.339466 GCTTATTTTTCCTTCCTCATAAGGTGA 59.661 37.037 2.76 0.00 45.37 4.02
379 387 7.916552 TCCTTAATATTGCTCGAAAACTTAGC 58.083 34.615 0.00 0.00 36.77 3.09
380 388 7.551262 TCCTTAATATTGCTCGAAAACTTAGCA 59.449 33.333 0.00 0.00 44.15 3.49
381 389 8.345565 CCTTAATATTGCTCGAAAACTTAGCAT 58.654 33.333 0.00 0.00 45.09 3.79
382 390 9.722056 CTTAATATTGCTCGAAAACTTAGCATT 57.278 29.630 0.00 0.00 45.09 3.56
384 392 8.620533 AATATTGCTCGAAAACTTAGCATTTC 57.379 30.769 0.00 2.27 45.09 2.17
385 393 5.431420 TTGCTCGAAAACTTAGCATTTCA 57.569 34.783 10.32 0.46 45.09 2.69
386 394 5.431420 TGCTCGAAAACTTAGCATTTCAA 57.569 34.783 10.32 0.00 41.15 2.69
387 395 5.451908 TGCTCGAAAACTTAGCATTTCAAG 58.548 37.500 10.32 4.17 41.15 3.02
388 396 5.238432 TGCTCGAAAACTTAGCATTTCAAGA 59.762 36.000 10.32 2.26 41.15 3.02
389 397 6.142817 GCTCGAAAACTTAGCATTTCAAGAA 58.857 36.000 10.32 0.00 35.72 2.52
390 398 6.803807 GCTCGAAAACTTAGCATTTCAAGAAT 59.196 34.615 10.32 0.00 35.72 2.40
391 399 7.962918 GCTCGAAAACTTAGCATTTCAAGAATA 59.037 33.333 10.32 0.00 35.72 1.75
392 400 9.825972 CTCGAAAACTTAGCATTTCAAGAATAA 57.174 29.630 10.32 0.00 35.72 1.40
415 423 2.203625 GGTTTCCAGCAGGGGCAA 60.204 61.111 0.00 0.00 44.61 4.52
483 495 8.974238 TCATTCATTAGAAGATGAAAAATGCCT 58.026 29.630 4.61 0.00 45.96 4.75
485 497 7.019774 TCATTAGAAGATGAAAAATGCCTCG 57.980 36.000 0.00 0.00 33.31 4.63
486 498 3.772060 AGAAGATGAAAAATGCCTCGC 57.228 42.857 0.00 0.00 0.00 5.03
488 500 1.838112 AGATGAAAAATGCCTCGCCA 58.162 45.000 0.00 0.00 0.00 5.69
536 550 9.607285 TGTTCTTTTCAAGATATTAAGAAACGC 57.393 29.630 0.00 0.00 36.80 4.84
539 553 9.214957 TCTTTTCAAGATATTAAGAAACGCTCA 57.785 29.630 0.00 0.00 31.20 4.26
732 754 5.990996 TCTTTGCCAAAATGAGAATTTCCAC 59.009 36.000 0.00 0.00 0.00 4.02
784 806 2.685387 ATCGCAGCCGTCGATCTTCC 62.685 60.000 0.00 0.00 42.28 3.46
799 821 3.543680 TCTTCCCTTGATCGTGGATTC 57.456 47.619 5.48 0.00 0.00 2.52
805 827 2.346803 CTTGATCGTGGATTCAACGGT 58.653 47.619 13.43 6.39 0.00 4.83
830 852 2.515523 AGCCATCATGACGCCAGC 60.516 61.111 11.95 4.90 0.00 4.85
992 1040 1.616327 CACCCACCCTCCATCCTCA 60.616 63.158 0.00 0.00 0.00 3.86
994 1042 2.735772 CCCACCCTCCATCCTCACG 61.736 68.421 0.00 0.00 0.00 4.35
995 1043 2.187946 CACCCTCCATCCTCACGC 59.812 66.667 0.00 0.00 0.00 5.34
996 1044 2.284625 ACCCTCCATCCTCACGCA 60.285 61.111 0.00 0.00 0.00 5.24
998 1046 2.060383 CCCTCCATCCTCACGCAGA 61.060 63.158 0.00 0.00 0.00 4.26
1903 1970 4.479993 GGCTGGATGCAGCTCGGT 62.480 66.667 33.99 0.00 46.69 4.69
2057 2124 2.365582 GATCTAGATCTCCCTCTCCGC 58.634 57.143 23.06 0.00 35.04 5.54
2058 2125 0.402504 TCTAGATCTCCCTCTCCGCC 59.597 60.000 0.00 0.00 0.00 6.13
2076 2143 2.356667 GCTTCCACCCCCTCCAAG 59.643 66.667 0.00 0.00 0.00 3.61
2084 2151 1.702957 CACCCCCTCCAAGTTTACTCA 59.297 52.381 0.00 0.00 0.00 3.41
2091 2158 5.716703 CCCCTCCAAGTTTACTCATCAAAAT 59.283 40.000 0.00 0.00 0.00 1.82
2092 2159 6.350445 CCCCTCCAAGTTTACTCATCAAAATG 60.350 42.308 0.00 0.00 0.00 2.32
2093 2160 6.095377 CCTCCAAGTTTACTCATCAAAATGC 58.905 40.000 0.00 0.00 32.58 3.56
2101 2168 9.768662 AGTTTACTCATCAAAATGCAAAATCTT 57.231 25.926 0.00 0.00 32.58 2.40
2141 2208 7.375053 CCTTTAGTTTTAGCTTTATGTTGCCA 58.625 34.615 0.00 0.00 0.00 4.92
2150 2217 1.934589 TTATGTTGCCACGGATCTCG 58.065 50.000 0.00 0.00 45.88 4.04
2165 2233 1.064621 CTCGGCGGAATTGGCATTG 59.935 57.895 7.21 0.00 0.00 2.82
2169 2237 0.101219 GGCGGAATTGGCATTGAGAC 59.899 55.000 0.00 0.00 0.00 3.36
2174 2242 2.762327 GGAATTGGCATTGAGACCACAT 59.238 45.455 0.00 0.00 35.10 3.21
2185 2253 4.698201 TGAGACCACATCAAACACCTAA 57.302 40.909 0.00 0.00 0.00 2.69
2193 2261 6.086222 CCACATCAAACACCTAAGAAAATCG 58.914 40.000 0.00 0.00 0.00 3.34
2194 2262 6.086222 CACATCAAACACCTAAGAAAATCGG 58.914 40.000 0.00 0.00 0.00 4.18
2196 2264 5.934935 TCAAACACCTAAGAAAATCGGAC 57.065 39.130 0.00 0.00 0.00 4.79
2198 2266 5.823570 TCAAACACCTAAGAAAATCGGACAA 59.176 36.000 0.00 0.00 0.00 3.18
2201 2269 6.894339 ACACCTAAGAAAATCGGACAAAAT 57.106 33.333 0.00 0.00 0.00 1.82
2206 2277 8.082242 ACCTAAGAAAATCGGACAAAATGAAAG 58.918 33.333 0.00 0.00 0.00 2.62
2207 2278 8.082242 CCTAAGAAAATCGGACAAAATGAAAGT 58.918 33.333 0.00 0.00 0.00 2.66
2217 2288 7.976734 TCGGACAAAATGAAAGTTAACAAATGT 59.023 29.630 8.61 1.53 0.00 2.71
2231 2302 5.398603 AACAAATGTGTTGTTCTTGTCCA 57.601 34.783 0.00 0.00 46.40 4.02
2236 2307 4.898829 TGTGTTGTTCTTGTCCAATGAG 57.101 40.909 0.00 0.00 0.00 2.90
2243 2314 3.334583 TCTTGTCCAATGAGCAGGTAC 57.665 47.619 0.00 0.00 0.00 3.34
2249 2320 0.254178 CAATGAGCAGGTACCTGGCT 59.746 55.000 36.91 32.14 43.77 4.75
2252 2323 1.260538 TGAGCAGGTACCTGGCTGAG 61.261 60.000 36.91 16.13 43.77 3.35
2402 2473 1.079336 GGACGCCAAGGGTGACTAC 60.079 63.158 2.32 0.00 36.58 2.73
2427 2498 2.839098 CCCTGGAGCACCTTGTGT 59.161 61.111 0.71 0.00 35.75 3.72
2459 2530 1.250154 CCATGGTTGCCAATGGACGT 61.250 55.000 2.05 0.00 36.95 4.34
2465 2536 0.816018 TTGCCAATGGACGTGACGTT 60.816 50.000 13.44 0.00 41.37 3.99
2477 2548 1.525077 TGACGTTGAGGTTGCCACC 60.525 57.895 0.00 0.00 44.67 4.61
2561 2632 2.664402 ACCAGAAGGCATTGACTGTT 57.336 45.000 0.00 0.00 39.06 3.16
2621 2692 2.357034 GTCTTCGTCCGCCTTGCA 60.357 61.111 0.00 0.00 0.00 4.08
2630 2701 0.747255 TCCGCCTTGCAGATCTCTAC 59.253 55.000 0.00 0.00 0.00 2.59
2636 2707 1.751351 CTTGCAGATCTCTACCACCGA 59.249 52.381 0.00 0.00 0.00 4.69
2639 2710 1.534175 GCAGATCTCTACCACCGAACG 60.534 57.143 0.00 0.00 0.00 3.95
2807 2878 2.493675 CCTAAAGCTTCTTCAAAGGGCC 59.506 50.000 0.00 0.00 0.00 5.80
2924 2995 2.984471 CGATTCAAGGAACTCGTTCGAA 59.016 45.455 0.00 0.00 38.49 3.71
3059 3130 0.308993 AGCTGTTTGAAGAAGCACGC 59.691 50.000 4.38 0.00 39.47 5.34
3155 3226 2.233271 GATGCCATGGGAAGGTATGTG 58.767 52.381 11.10 0.00 31.22 3.21
3185 3256 4.586001 ACACAAACTGGATTCTTCTGCAAT 59.414 37.500 0.00 0.00 0.00 3.56
3186 3257 5.069516 ACACAAACTGGATTCTTCTGCAATT 59.930 36.000 0.00 0.00 0.00 2.32
3291 3362 5.178797 AGGGTATCTTCTCGTCATTGTTTG 58.821 41.667 0.00 0.00 0.00 2.93
3472 3543 6.183360 TGCAAACAACCGATATATTGCTTGAT 60.183 34.615 12.98 1.25 42.59 2.57
3481 3552 7.609146 ACCGATATATTGCTTGATGAATCATGT 59.391 33.333 0.00 0.00 36.56 3.21
3482 3553 9.101655 CCGATATATTGCTTGATGAATCATGTA 57.898 33.333 0.00 1.60 36.56 2.29
3483 3554 9.911980 CGATATATTGCTTGATGAATCATGTAC 57.088 33.333 0.00 0.00 36.56 2.90
3581 3666 8.320617 ACACAAATTGGTCTAAATTAATGGCAT 58.679 29.630 0.00 0.00 0.00 4.40
3618 3711 5.754782 TCCAAACTAACATATGCAGTGGAT 58.245 37.500 10.46 1.66 0.00 3.41
3622 3715 4.965814 ACTAACATATGCAGTGGATCTGG 58.034 43.478 13.36 2.54 43.78 3.86
3630 3723 2.092968 TGCAGTGGATCTGGTATTGGTC 60.093 50.000 0.00 0.00 43.78 4.02
3631 3724 2.171448 GCAGTGGATCTGGTATTGGTCT 59.829 50.000 0.00 0.00 43.78 3.85
3632 3725 3.388024 GCAGTGGATCTGGTATTGGTCTA 59.612 47.826 0.00 0.00 43.78 2.59
3633 3726 4.141711 GCAGTGGATCTGGTATTGGTCTAA 60.142 45.833 0.00 0.00 43.78 2.10
3634 3727 5.629133 GCAGTGGATCTGGTATTGGTCTAAA 60.629 44.000 0.00 0.00 43.78 1.85
3636 3729 7.056635 CAGTGGATCTGGTATTGGTCTAAATT 58.943 38.462 0.00 0.00 40.23 1.82
3702 3798 6.039415 TCCTTCAGTCCTATATTACCCAGT 57.961 41.667 0.00 0.00 0.00 4.00
3706 3802 8.711170 CCTTCAGTCCTATATTACCCAGTTTTA 58.289 37.037 0.00 0.00 0.00 1.52
3735 3831 1.347378 ACACACAATTGCATTTCCCCC 59.653 47.619 5.05 0.00 0.00 5.40
3741 3837 1.113788 ATTGCATTTCCCCCGTGATG 58.886 50.000 0.00 0.00 0.00 3.07
3744 3840 1.004862 TGCATTTCCCCCGTGATGTTA 59.995 47.619 0.00 0.00 0.00 2.41
3787 3883 3.822594 TGAATTGACGGTGTGCATAAC 57.177 42.857 0.00 0.00 0.00 1.89
3788 3884 3.407698 TGAATTGACGGTGTGCATAACT 58.592 40.909 0.00 0.00 0.00 2.24
3890 3986 4.142859 GCTGATTTTGTTCTGCTCTCTGAG 60.143 45.833 0.00 0.00 37.53 3.35
4038 4141 1.964552 CTGGTCATTCCTGCCATCTC 58.035 55.000 0.00 0.00 37.07 2.75
4104 4207 3.618594 TGTCGCTTCATGCTAATGAGTTC 59.381 43.478 0.00 0.00 43.64 3.01
4105 4208 3.618594 GTCGCTTCATGCTAATGAGTTCA 59.381 43.478 0.00 0.00 43.64 3.18
4113 4216 8.877808 TTCATGCTAATGAGTTCAGTATACAG 57.122 34.615 5.50 0.00 43.64 2.74
4152 4255 2.537143 TCCCTGTCCTTCCTGTTAGAC 58.463 52.381 0.00 0.00 0.00 2.59
4167 4270 4.421058 TGTTAGACGATCCATTTCTGTCG 58.579 43.478 0.00 0.00 39.78 4.35
4182 4497 3.250744 TCTGTCGCTTGTATCTTTTCCG 58.749 45.455 0.00 0.00 0.00 4.30
4190 4505 3.328382 TGTATCTTTTCCGTGACCTGG 57.672 47.619 0.00 0.00 0.00 4.45
4202 4517 1.607148 GTGACCTGGCACTTGGTTTAC 59.393 52.381 12.17 0.00 36.22 2.01
4485 4802 3.365767 GCTGATGAGAAGAAAACAGTGCC 60.366 47.826 0.00 0.00 0.00 5.01
4523 4840 6.129179 ACATAAGAGGAGAGAGAAAGAGAGG 58.871 44.000 0.00 0.00 0.00 3.69
4545 4870 3.951037 GAGAGGAGAGAGAAGCATGTGTA 59.049 47.826 0.00 0.00 0.00 2.90
4546 4871 4.348486 AGAGGAGAGAGAAGCATGTGTAA 58.652 43.478 0.00 0.00 0.00 2.41
4547 4872 4.774726 AGAGGAGAGAGAAGCATGTGTAAA 59.225 41.667 0.00 0.00 0.00 2.01
4548 4873 5.083533 AGGAGAGAGAAGCATGTGTAAAG 57.916 43.478 0.00 0.00 0.00 1.85
4587 4912 3.366396 TGCTGGTAGAGTAGGAAGGAAG 58.634 50.000 0.00 0.00 0.00 3.46
4588 4913 2.696187 GCTGGTAGAGTAGGAAGGAAGG 59.304 54.545 0.00 0.00 0.00 3.46
4589 4914 3.301274 CTGGTAGAGTAGGAAGGAAGGG 58.699 54.545 0.00 0.00 0.00 3.95
4590 4915 2.931088 TGGTAGAGTAGGAAGGAAGGGA 59.069 50.000 0.00 0.00 0.00 4.20
4591 4916 3.052793 TGGTAGAGTAGGAAGGAAGGGAG 60.053 52.174 0.00 0.00 0.00 4.30
4592 4917 2.858787 AGAGTAGGAAGGAAGGGAGG 57.141 55.000 0.00 0.00 0.00 4.30
4593 4918 2.298951 AGAGTAGGAAGGAAGGGAGGA 58.701 52.381 0.00 0.00 0.00 3.71
4594 4919 2.660556 AGAGTAGGAAGGAAGGGAGGAA 59.339 50.000 0.00 0.00 0.00 3.36
4668 5012 3.733684 GCTGTTGTGTACCCACTTGTTTG 60.734 47.826 0.00 0.00 42.34 2.93
4686 5030 5.129634 TGTTTGCCTGAAGAAGTGTTATGA 58.870 37.500 0.00 0.00 0.00 2.15
4687 5031 5.769662 TGTTTGCCTGAAGAAGTGTTATGAT 59.230 36.000 0.00 0.00 0.00 2.45
4756 5100 6.295518 CCTGCTGCTCTTGTATCTGGATAATA 60.296 42.308 0.00 0.00 0.00 0.98
4757 5101 7.066307 TGCTGCTCTTGTATCTGGATAATAA 57.934 36.000 0.00 0.00 0.00 1.40
4758 5102 7.683578 TGCTGCTCTTGTATCTGGATAATAAT 58.316 34.615 0.00 0.00 0.00 1.28
4802 5146 9.979578 TTTTGTATATCATTTTGAACTGCTGTT 57.020 25.926 8.91 8.91 39.42 3.16
4803 5147 8.969121 TTGTATATCATTTTGAACTGCTGTTG 57.031 30.769 14.22 0.00 36.39 3.33
4804 5148 8.334263 TGTATATCATTTTGAACTGCTGTTGA 57.666 30.769 14.22 2.08 36.39 3.18
4805 5149 8.791675 TGTATATCATTTTGAACTGCTGTTGAA 58.208 29.630 14.22 9.04 36.39 2.69
4806 5150 9.065871 GTATATCATTTTGAACTGCTGTTGAAC 57.934 33.333 14.22 0.29 36.39 3.18
4809 5153 5.749588 TCATTTTGAACTGCTGTTGAACATG 59.250 36.000 20.70 20.70 38.16 3.21
4811 5155 5.826601 TTTGAACTGCTGTTGAACATGTA 57.173 34.783 14.22 0.00 36.39 2.29
4812 5156 6.389830 TTTGAACTGCTGTTGAACATGTAT 57.610 33.333 14.22 0.00 36.39 2.29
4813 5157 7.503521 TTTGAACTGCTGTTGAACATGTATA 57.496 32.000 14.22 0.00 36.39 1.47
4815 5159 7.307493 TGAACTGCTGTTGAACATGTATATC 57.693 36.000 14.22 0.00 36.39 1.63
4816 5160 6.878389 TGAACTGCTGTTGAACATGTATATCA 59.122 34.615 14.22 0.00 36.39 2.15
4817 5161 6.668541 ACTGCTGTTGAACATGTATATCAC 57.331 37.500 0.00 0.00 0.00 3.06
4818 5162 6.409704 ACTGCTGTTGAACATGTATATCACT 58.590 36.000 0.00 0.00 0.00 3.41
4819 5163 6.881065 ACTGCTGTTGAACATGTATATCACTT 59.119 34.615 0.00 0.00 0.00 3.16
4821 5165 7.529158 TGCTGTTGAACATGTATATCACTTTG 58.471 34.615 0.00 0.00 0.00 2.77
4822 5166 7.174772 TGCTGTTGAACATGTATATCACTTTGT 59.825 33.333 0.00 0.00 0.00 2.83
4823 5167 8.664798 GCTGTTGAACATGTATATCACTTTGTA 58.335 33.333 0.00 0.00 0.00 2.41
4828 5172 9.546428 TGAACATGTATATCACTTTGTATCTGG 57.454 33.333 0.00 0.00 0.00 3.86
4889 5379 2.554032 CGGCATTTGTTTTGAGAGGAGT 59.446 45.455 0.00 0.00 0.00 3.85
4891 5381 3.305608 GGCATTTGTTTTGAGAGGAGTGG 60.306 47.826 0.00 0.00 0.00 4.00
4892 5382 3.569701 GCATTTGTTTTGAGAGGAGTGGA 59.430 43.478 0.00 0.00 0.00 4.02
4899 5480 0.482887 TGAGAGGAGTGGAGGTGTCA 59.517 55.000 0.00 0.00 0.00 3.58
4963 5544 3.059834 GCTGAAATTGTTGCTGTAATGCG 59.940 43.478 0.00 0.00 35.36 4.73
5046 5628 4.174009 TCCGCTCTCTTAGATTGTTTTCG 58.826 43.478 0.00 0.00 0.00 3.46
5207 5791 3.948196 TTAGAAAACGTTTGTGGGTCG 57.052 42.857 15.46 0.00 0.00 4.79
5215 5799 1.069500 CGTTTGTGGGTCGGAAACATC 60.069 52.381 0.00 0.00 31.25 3.06
5216 5800 1.950909 GTTTGTGGGTCGGAAACATCA 59.049 47.619 0.00 0.00 31.25 3.07
5219 5803 0.451783 GTGGGTCGGAAACATCATGC 59.548 55.000 0.00 0.00 0.00 4.06
5220 5804 0.037447 TGGGTCGGAAACATCATGCA 59.963 50.000 0.00 0.00 0.00 3.96
5221 5805 1.173043 GGGTCGGAAACATCATGCAA 58.827 50.000 0.00 0.00 0.00 4.08
5223 5807 2.166254 GGGTCGGAAACATCATGCAAAT 59.834 45.455 0.00 0.00 0.00 2.32
5224 5808 3.368323 GGGTCGGAAACATCATGCAAATT 60.368 43.478 0.00 0.00 0.00 1.82
5226 5810 4.091800 GGTCGGAAACATCATGCAAATTTG 59.908 41.667 14.03 14.03 0.00 2.32
5273 5860 6.899393 TGGTCATAGACTTGAAAAATGCTT 57.101 33.333 0.00 0.00 32.47 3.91
5286 5873 7.059448 TGAAAAATGCTTGTGAACTTTCAAC 57.941 32.000 0.00 0.00 39.21 3.18
5395 5989 5.903198 AAAAGAAAAATGTTCCATGGGGA 57.097 34.783 13.02 0.00 43.03 4.81
5403 5997 2.304831 TTCCATGGGGATGGCACGA 61.305 57.895 13.02 0.00 44.48 4.35
5422 6016 0.255890 AGATGGCCTATGCAAACGGT 59.744 50.000 3.32 0.00 40.13 4.83
5423 6017 1.488812 AGATGGCCTATGCAAACGGTA 59.511 47.619 3.32 0.00 40.13 4.02
5462 6056 4.052229 AGCGACGGACGTTCAGGG 62.052 66.667 0.00 0.00 44.60 4.45
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.705658 CACTCCTGCCATTATAGGTGGA 59.294 50.000 9.71 3.60 39.12 4.02
1 2 2.224621 CCACTCCTGCCATTATAGGTGG 60.225 54.545 0.00 0.00 39.80 4.61
2 3 2.705658 TCCACTCCTGCCATTATAGGTG 59.294 50.000 0.00 0.00 35.54 4.00
11 17 0.768221 AGAGGTTTCCACTCCTGCCA 60.768 55.000 0.00 0.00 35.58 4.92
14 20 4.020218 TGTTGATAGAGGTTTCCACTCCTG 60.020 45.833 0.00 0.00 35.58 3.86
15 21 4.168101 TGTTGATAGAGGTTTCCACTCCT 58.832 43.478 0.00 0.00 35.58 3.69
27 33 6.834959 AAGTTGCGTATCATGTTGATAGAG 57.165 37.500 0.00 0.00 39.76 2.43
40 46 8.368668 AGAAGCCTTTATATCTAAGTTGCGTAT 58.631 33.333 0.00 0.00 0.00 3.06
43 49 7.484035 AAGAAGCCTTTATATCTAAGTTGCG 57.516 36.000 0.00 0.00 0.00 4.85
44 50 8.346300 GGAAAGAAGCCTTTATATCTAAGTTGC 58.654 37.037 0.00 0.00 42.30 4.17
50 56 7.806180 AGCAAGGAAAGAAGCCTTTATATCTA 58.194 34.615 0.00 0.00 42.99 1.98
75 81 7.727578 TTACAGTTTATGTCTCACCCTATGA 57.272 36.000 0.00 0.00 42.70 2.15
79 85 9.614792 GAATTATTACAGTTTATGTCTCACCCT 57.385 33.333 0.00 0.00 42.70 4.34
80 86 9.614792 AGAATTATTACAGTTTATGTCTCACCC 57.385 33.333 0.00 0.00 42.70 4.61
126 134 8.707938 AATTATTCTTGCAATGCTAAGTTTCC 57.292 30.769 6.82 0.00 0.00 3.13
135 143 9.759259 GGAAACTTTTAATTATTCTTGCAATGC 57.241 29.630 0.00 0.00 0.00 3.56
144 152 7.041721 CCCCTGCTGGAAACTTTTAATTATTC 58.958 38.462 11.88 0.00 35.39 1.75
147 155 4.221924 GCCCCTGCTGGAAACTTTTAATTA 59.778 41.667 11.88 0.00 35.39 1.40
155 163 2.437897 CTGCCCCTGCTGGAAACT 59.562 61.111 11.88 0.00 38.71 2.66
161 169 2.517875 GCATACCTGCCCCTGCTG 60.518 66.667 0.00 0.00 42.88 4.41
170 178 2.174639 TGGAATGTTAGGGGCATACCTG 59.825 50.000 4.29 0.00 42.02 4.00
171 179 2.498441 TGGAATGTTAGGGGCATACCT 58.502 47.619 0.00 0.00 44.75 3.08
172 180 3.306472 TTGGAATGTTAGGGGCATACC 57.694 47.619 0.00 0.00 39.11 2.73
173 181 5.669164 TTTTTGGAATGTTAGGGGCATAC 57.331 39.130 0.00 0.00 0.00 2.39
192 200 9.651718 GACGAAATATTATCGAATGCTCTTTTT 57.348 29.630 19.76 1.49 42.76 1.94
193 201 9.046296 AGACGAAATATTATCGAATGCTCTTTT 57.954 29.630 19.76 1.86 42.76 2.27
194 202 8.594881 AGACGAAATATTATCGAATGCTCTTT 57.405 30.769 19.76 0.00 42.76 2.52
195 203 9.862371 ATAGACGAAATATTATCGAATGCTCTT 57.138 29.630 19.76 2.88 42.76 2.85
196 204 9.862371 AATAGACGAAATATTATCGAATGCTCT 57.138 29.630 19.76 15.05 42.76 4.09
211 219 8.948631 TTTGCATCTTCTCTAATAGACGAAAT 57.051 30.769 0.00 0.00 36.21 2.17
212 220 8.771920 TTTTGCATCTTCTCTAATAGACGAAA 57.228 30.769 0.00 0.00 36.21 3.46
213 221 8.820933 CATTTTGCATCTTCTCTAATAGACGAA 58.179 33.333 0.00 0.00 36.21 3.85
214 222 7.042456 GCATTTTGCATCTTCTCTAATAGACGA 60.042 37.037 0.00 0.00 44.26 4.20
215 223 7.068341 GCATTTTGCATCTTCTCTAATAGACG 58.932 38.462 0.00 0.00 44.26 4.18
232 240 1.608109 CTTTTTGGTGGGGCATTTTGC 59.392 47.619 0.00 0.00 44.08 3.68
233 241 2.228925 CCTTTTTGGTGGGGCATTTTG 58.771 47.619 0.00 0.00 0.00 2.44
234 242 1.144708 CCCTTTTTGGTGGGGCATTTT 59.855 47.619 0.00 0.00 39.76 1.82
235 243 0.770499 CCCTTTTTGGTGGGGCATTT 59.230 50.000 0.00 0.00 39.76 2.32
236 244 2.462301 CCCTTTTTGGTGGGGCATT 58.538 52.632 0.00 0.00 39.76 3.56
237 245 4.231140 CCCTTTTTGGTGGGGCAT 57.769 55.556 0.00 0.00 39.76 4.40
240 248 1.459348 ACTGCCCTTTTTGGTGGGG 60.459 57.895 0.00 0.00 43.53 4.96
241 249 1.747774 CACTGCCCTTTTTGGTGGG 59.252 57.895 0.00 0.00 46.00 4.61
242 250 1.747774 CCACTGCCCTTTTTGGTGG 59.252 57.895 0.00 0.00 40.84 4.61
243 251 2.515288 ACCACTGCCCTTTTTGGTG 58.485 52.632 0.00 0.00 40.96 4.17
244 252 1.048160 CCACCACTGCCCTTTTTGGT 61.048 55.000 0.00 0.00 43.39 3.67
245 253 0.758685 TCCACCACTGCCCTTTTTGG 60.759 55.000 0.00 0.00 35.06 3.28
246 254 1.118838 TTCCACCACTGCCCTTTTTG 58.881 50.000 0.00 0.00 0.00 2.44
247 255 1.484653 GTTTCCACCACTGCCCTTTTT 59.515 47.619 0.00 0.00 0.00 1.94
248 256 1.119684 GTTTCCACCACTGCCCTTTT 58.880 50.000 0.00 0.00 0.00 2.27
249 257 0.759060 GGTTTCCACCACTGCCCTTT 60.759 55.000 0.00 0.00 43.61 3.11
250 258 1.152546 GGTTTCCACCACTGCCCTT 60.153 57.895 0.00 0.00 43.61 3.95
251 259 2.520968 GGTTTCCACCACTGCCCT 59.479 61.111 0.00 0.00 43.61 5.19
259 267 3.378427 GCATATTGACAGAGGTTTCCACC 59.622 47.826 0.00 0.00 44.67 4.61
260 268 4.095483 CAGCATATTGACAGAGGTTTCCAC 59.905 45.833 0.00 0.00 0.00 4.02
261 269 4.264253 CAGCATATTGACAGAGGTTTCCA 58.736 43.478 0.00 0.00 0.00 3.53
262 270 3.065925 GCAGCATATTGACAGAGGTTTCC 59.934 47.826 0.00 0.00 0.00 3.13
263 271 3.691118 TGCAGCATATTGACAGAGGTTTC 59.309 43.478 0.00 0.00 0.00 2.78
264 272 3.441572 GTGCAGCATATTGACAGAGGTTT 59.558 43.478 0.00 0.00 0.00 3.27
265 273 3.012518 GTGCAGCATATTGACAGAGGTT 58.987 45.455 0.00 0.00 0.00 3.50
266 274 2.026915 TGTGCAGCATATTGACAGAGGT 60.027 45.455 0.00 0.00 0.00 3.85
267 275 2.635714 TGTGCAGCATATTGACAGAGG 58.364 47.619 0.00 0.00 0.00 3.69
268 276 3.688185 AGTTGTGCAGCATATTGACAGAG 59.312 43.478 0.00 0.00 0.00 3.35
269 277 3.678289 AGTTGTGCAGCATATTGACAGA 58.322 40.909 0.00 0.00 0.00 3.41
270 278 3.688185 AGAGTTGTGCAGCATATTGACAG 59.312 43.478 0.00 0.00 0.00 3.51
271 279 3.437741 CAGAGTTGTGCAGCATATTGACA 59.562 43.478 0.00 0.00 0.00 3.58
272 280 3.686241 TCAGAGTTGTGCAGCATATTGAC 59.314 43.478 0.00 0.00 0.00 3.18
273 281 3.941573 TCAGAGTTGTGCAGCATATTGA 58.058 40.909 0.00 0.00 0.00 2.57
274 282 4.895224 ATCAGAGTTGTGCAGCATATTG 57.105 40.909 0.00 0.00 0.00 1.90
275 283 6.293698 TCATATCAGAGTTGTGCAGCATATT 58.706 36.000 0.00 0.00 0.00 1.28
276 284 5.861727 TCATATCAGAGTTGTGCAGCATAT 58.138 37.500 0.00 0.00 0.00 1.78
277 285 5.280654 TCATATCAGAGTTGTGCAGCATA 57.719 39.130 0.00 0.00 0.00 3.14
278 286 4.146745 TCATATCAGAGTTGTGCAGCAT 57.853 40.909 0.00 0.00 0.00 3.79
279 287 3.615224 TCATATCAGAGTTGTGCAGCA 57.385 42.857 0.00 0.00 0.00 4.41
280 288 3.311871 CCTTCATATCAGAGTTGTGCAGC 59.688 47.826 0.00 0.00 0.00 5.25
281 289 3.311871 GCCTTCATATCAGAGTTGTGCAG 59.688 47.826 0.00 0.00 0.00 4.41
282 290 3.054875 AGCCTTCATATCAGAGTTGTGCA 60.055 43.478 0.00 0.00 0.00 4.57
283 291 3.539604 AGCCTTCATATCAGAGTTGTGC 58.460 45.455 0.00 0.00 0.00 4.57
284 292 7.798596 AATAAGCCTTCATATCAGAGTTGTG 57.201 36.000 0.00 0.00 0.00 3.33
285 293 8.814038 AAAATAAGCCTTCATATCAGAGTTGT 57.186 30.769 0.00 0.00 0.00 3.32
286 294 9.727627 GAAAAATAAGCCTTCATATCAGAGTTG 57.272 33.333 0.00 0.00 0.00 3.16
287 295 8.907885 GGAAAAATAAGCCTTCATATCAGAGTT 58.092 33.333 0.00 0.00 0.00 3.01
288 296 8.277918 AGGAAAAATAAGCCTTCATATCAGAGT 58.722 33.333 0.00 0.00 0.00 3.24
289 297 8.688747 AGGAAAAATAAGCCTTCATATCAGAG 57.311 34.615 0.00 0.00 0.00 3.35
299 307 8.298729 CTTATGAGGAAGGAAAAATAAGCCTT 57.701 34.615 0.00 0.00 44.32 4.35
300 308 7.888250 CTTATGAGGAAGGAAAAATAAGCCT 57.112 36.000 0.00 0.00 0.00 4.58
353 361 8.560374 GCTAAGTTTTCGAGCAATATTAAGGAT 58.440 33.333 0.00 0.00 35.01 3.24
354 362 7.551262 TGCTAAGTTTTCGAGCAATATTAAGGA 59.449 33.333 0.00 0.00 39.45 3.36
355 363 7.693952 TGCTAAGTTTTCGAGCAATATTAAGG 58.306 34.615 0.00 0.00 39.45 2.69
356 364 9.722056 AATGCTAAGTTTTCGAGCAATATTAAG 57.278 29.630 2.31 0.00 43.18 1.85
358 366 9.716507 GAAATGCTAAGTTTTCGAGCAATATTA 57.283 29.630 2.31 0.00 43.18 0.98
359 367 8.243426 TGAAATGCTAAGTTTTCGAGCAATATT 58.757 29.630 2.31 0.00 43.18 1.28
360 368 7.761409 TGAAATGCTAAGTTTTCGAGCAATAT 58.239 30.769 2.31 0.00 43.18 1.28
361 369 7.139896 TGAAATGCTAAGTTTTCGAGCAATA 57.860 32.000 2.31 0.00 43.18 1.90
362 370 6.012658 TGAAATGCTAAGTTTTCGAGCAAT 57.987 33.333 2.31 0.00 43.18 3.56
363 371 5.431420 TGAAATGCTAAGTTTTCGAGCAA 57.569 34.783 2.31 0.00 43.18 3.91
364 372 5.238432 TCTTGAAATGCTAAGTTTTCGAGCA 59.762 36.000 0.69 0.69 43.72 4.26
365 373 5.689819 TCTTGAAATGCTAAGTTTTCGAGC 58.310 37.500 7.48 0.00 40.70 5.03
366 374 9.825972 TTATTCTTGAAATGCTAAGTTTTCGAG 57.174 29.630 6.38 6.38 41.60 4.04
381 389 9.705290 GCTGGAAACCTTTAATTATTCTTGAAA 57.295 29.630 0.00 0.00 0.00 2.69
382 390 8.865090 TGCTGGAAACCTTTAATTATTCTTGAA 58.135 29.630 0.00 0.00 0.00 2.69
383 391 8.415950 TGCTGGAAACCTTTAATTATTCTTGA 57.584 30.769 0.00 0.00 0.00 3.02
384 392 7.761249 CCTGCTGGAAACCTTTAATTATTCTTG 59.239 37.037 2.92 0.00 34.57 3.02
385 393 7.093333 CCCTGCTGGAAACCTTTAATTATTCTT 60.093 37.037 11.88 0.00 35.39 2.52
386 394 6.381133 CCCTGCTGGAAACCTTTAATTATTCT 59.619 38.462 11.88 0.00 35.39 2.40
387 395 6.406961 CCCCTGCTGGAAACCTTTAATTATTC 60.407 42.308 11.88 0.00 35.39 1.75
388 396 5.425217 CCCCTGCTGGAAACCTTTAATTATT 59.575 40.000 11.88 0.00 35.39 1.40
389 397 4.962362 CCCCTGCTGGAAACCTTTAATTAT 59.038 41.667 11.88 0.00 35.39 1.28
390 398 4.349365 CCCCTGCTGGAAACCTTTAATTA 58.651 43.478 11.88 0.00 35.39 1.40
391 399 3.173151 CCCCTGCTGGAAACCTTTAATT 58.827 45.455 11.88 0.00 35.39 1.40
392 400 2.820178 CCCCTGCTGGAAACCTTTAAT 58.180 47.619 11.88 0.00 35.39 1.40
393 401 1.825641 GCCCCTGCTGGAAACCTTTAA 60.826 52.381 11.88 0.00 35.39 1.52
394 402 0.251608 GCCCCTGCTGGAAACCTTTA 60.252 55.000 11.88 0.00 35.39 1.85
399 407 0.251165 TAGTTGCCCCTGCTGGAAAC 60.251 55.000 11.88 11.98 38.71 2.78
402 410 1.609239 CATAGTTGCCCCTGCTGGA 59.391 57.895 11.88 0.00 38.71 3.86
415 423 4.601406 TTTGGAATGTTAGGGGCATAGT 57.399 40.909 0.00 0.00 0.00 2.12
459 471 8.133627 CGAGGCATTTTTCATCTTCTAATGAAT 58.866 33.333 0.00 0.00 43.30 2.57
462 474 5.684626 GCGAGGCATTTTTCATCTTCTAATG 59.315 40.000 0.00 0.00 0.00 1.90
732 754 9.761504 AAACTCTAACTCTGATGTATGATGATG 57.238 33.333 0.00 0.00 0.00 3.07
742 764 7.096681 CGATCGATCAAAACTCTAACTCTGATG 60.097 40.741 24.40 0.00 0.00 3.07
759 781 2.026157 GACGGCTGCGATCGATCA 59.974 61.111 24.40 7.32 0.00 2.92
784 806 1.665679 CCGTTGAATCCACGATCAAGG 59.334 52.381 8.50 0.00 0.00 3.61
792 814 1.676014 CCTCCTCACCGTTGAATCCAC 60.676 57.143 0.00 0.00 0.00 4.02
799 821 1.903877 ATGGCTCCTCCTCACCGTTG 61.904 60.000 0.00 0.00 35.26 4.10
805 827 1.126488 GTCATGATGGCTCCTCCTCA 58.874 55.000 0.00 0.00 35.26 3.86
830 852 2.008268 GATGGCAACGGGATGCTTGG 62.008 60.000 9.47 0.00 45.68 3.61
983 1030 0.176449 CATGTCTGCGTGAGGATGGA 59.824 55.000 0.00 0.00 33.58 3.41
986 1033 4.528674 GCATGTCTGCGTGAGGAT 57.471 55.556 0.00 0.00 38.92 3.24
1903 1970 3.899981 GAGCATGGCGTGGGTGTCA 62.900 63.158 9.08 0.00 0.00 3.58
2058 2125 3.628646 CTTGGAGGGGGTGGAAGCG 62.629 68.421 0.00 0.00 33.03 4.68
2068 2135 6.624423 CATTTTGATGAGTAAACTTGGAGGG 58.376 40.000 0.00 0.00 0.00 4.30
2141 2208 1.227263 CAATTCCGCCGAGATCCGT 60.227 57.895 0.00 0.00 36.31 4.69
2150 2217 0.101219 GTCTCAATGCCAATTCCGCC 59.899 55.000 0.00 0.00 0.00 6.13
2153 2220 2.170166 TGTGGTCTCAATGCCAATTCC 58.830 47.619 0.00 0.00 36.41 3.01
2154 2221 3.444742 TGATGTGGTCTCAATGCCAATTC 59.555 43.478 0.00 0.00 36.41 2.17
2165 2233 4.894784 TCTTAGGTGTTTGATGTGGTCTC 58.105 43.478 0.00 0.00 0.00 3.36
2169 2237 6.086222 CGATTTTCTTAGGTGTTTGATGTGG 58.914 40.000 0.00 0.00 0.00 4.17
2174 2242 5.369833 TGTCCGATTTTCTTAGGTGTTTGA 58.630 37.500 0.00 0.00 0.00 2.69
2185 2253 9.244799 GTTAACTTTCATTTTGTCCGATTTTCT 57.755 29.630 0.00 0.00 0.00 2.52
2193 2261 8.878769 ACACATTTGTTAACTTTCATTTTGTCC 58.121 29.630 7.22 0.00 28.43 4.02
2201 2269 8.920665 CAAGAACAACACATTTGTTAACTTTCA 58.079 29.630 7.22 0.00 44.57 2.69
2206 2277 6.809196 TGGACAAGAACAACACATTTGTTAAC 59.191 34.615 0.00 0.00 44.57 2.01
2207 2278 6.925211 TGGACAAGAACAACACATTTGTTAA 58.075 32.000 0.00 0.00 44.57 2.01
2217 2288 3.286353 TGCTCATTGGACAAGAACAACA 58.714 40.909 0.00 0.00 0.00 3.33
2222 2293 2.957402 ACCTGCTCATTGGACAAGAA 57.043 45.000 0.00 0.00 0.00 2.52
2229 2300 0.749454 GCCAGGTACCTGCTCATTGG 60.749 60.000 32.98 20.86 42.35 3.16
2231 2302 0.254178 CAGCCAGGTACCTGCTCATT 59.746 55.000 32.98 14.57 42.35 2.57
2236 2307 2.586792 CCTCAGCCAGGTACCTGC 59.413 66.667 32.98 26.71 42.35 4.85
2243 2314 4.790962 ACATGCGCCTCAGCCAGG 62.791 66.667 4.18 0.00 46.82 4.45
2249 2320 3.740397 GCTTGCACATGCGCCTCA 61.740 61.111 4.18 0.00 45.83 3.86
2252 2323 3.437795 AGAGCTTGCACATGCGCC 61.438 61.111 4.18 0.00 45.83 6.53
2279 2350 2.099431 GCACAGCTTCTCTGCCTCG 61.099 63.158 0.00 0.00 46.76 4.63
2366 2437 0.403271 CCAGGATAAGGGCCATCAGG 59.597 60.000 6.18 3.32 38.23 3.86
2459 2530 1.525077 GGTGGCAACCTCAACGTCA 60.525 57.895 1.77 0.00 43.84 4.35
2552 2623 3.406764 GGCAGACTTGAGAACAGTCAAT 58.593 45.455 3.06 0.00 35.88 2.57
2561 2632 3.059982 CCACGGGCAGACTTGAGA 58.940 61.111 0.00 0.00 0.00 3.27
2594 2665 1.810030 GACGAAGACGGATGCCACC 60.810 63.158 0.00 0.00 44.46 4.61
2603 2674 3.479269 GCAAGGCGGACGAAGACG 61.479 66.667 0.00 0.00 45.75 4.18
2621 2692 1.390565 CCGTTCGGTGGTAGAGATCT 58.609 55.000 0.00 0.00 0.00 2.75
2630 2701 3.952628 GAGCTTCCCCGTTCGGTGG 62.953 68.421 10.36 10.64 0.00 4.61
2639 2710 3.471806 GACTCCCGGAGCTTCCCC 61.472 72.222 14.86 0.00 31.13 4.81
2651 2722 1.480954 TCGCAGTAGGATTTGGACTCC 59.519 52.381 0.00 0.00 0.00 3.85
2807 2878 0.605589 AGTCCTCGAGCAACTTCAGG 59.394 55.000 6.99 0.00 0.00 3.86
2877 2948 6.127591 GCATACCTCCCTATCATGTAGTACAG 60.128 46.154 9.25 1.72 0.00 2.74
2924 2995 0.671251 TCAATTTGGAAACCGCGCTT 59.329 45.000 5.56 0.00 0.00 4.68
3059 3130 0.814457 ACTCCTGCTCTAGAACTGCG 59.186 55.000 0.00 0.00 0.00 5.18
3155 3226 7.009540 CAGAAGAATCCAGTTTGTGTTTTCAAC 59.990 37.037 0.00 0.00 0.00 3.18
3185 3256 6.552008 AGGTTCTGAATAAAATGACTGGGAA 58.448 36.000 0.00 0.00 0.00 3.97
3186 3257 6.139679 AGGTTCTGAATAAAATGACTGGGA 57.860 37.500 0.00 0.00 0.00 4.37
3281 3352 7.426456 CGTTAATCTACAGATGCAAACAATGAC 59.574 37.037 0.00 0.00 34.49 3.06
3291 3362 2.833794 TGGGCGTTAATCTACAGATGC 58.166 47.619 0.00 0.00 34.49 3.91
3402 3473 9.454859 GCATAGAATAATTAAATCTAGCCACCT 57.545 33.333 13.60 0.00 0.00 4.00
3481 3552 5.105187 CCTCACATGGAAGTGAAGATCAGTA 60.105 44.000 0.00 0.00 46.90 2.74
3482 3553 4.323333 CCTCACATGGAAGTGAAGATCAGT 60.323 45.833 0.00 0.00 46.90 3.41
3483 3554 4.190001 CCTCACATGGAAGTGAAGATCAG 58.810 47.826 0.00 0.00 46.90 2.90
3581 3666 2.174639 AGTTTGGAACTCATGGGTCACA 59.825 45.455 0.00 0.00 37.02 3.58
3618 3711 8.058847 AGGCAATTAATTTAGACCAATACCAGA 58.941 33.333 0.00 0.00 0.00 3.86
3653 3749 5.789643 ACAAAACCACAAATGTAGATGCT 57.210 34.783 0.00 0.00 0.00 3.79
3695 3791 6.261381 GTGTGTTGAAGTGATAAAACTGGGTA 59.739 38.462 0.00 0.00 0.00 3.69
3702 3798 7.038048 TGCAATTGTGTGTTGAAGTGATAAAA 58.962 30.769 7.40 0.00 0.00 1.52
3706 3802 4.652421 TGCAATTGTGTGTTGAAGTGAT 57.348 36.364 7.40 0.00 0.00 3.06
3713 3809 2.807392 GGGGAAATGCAATTGTGTGTTG 59.193 45.455 7.40 0.00 36.10 3.33
3760 3856 3.130633 CACACCGTCAATTCAACAGAGA 58.869 45.455 0.00 0.00 0.00 3.10
3787 3883 6.708054 GTGTAACCATGGAGATCCTAAATGAG 59.292 42.308 21.47 0.00 36.82 2.90
3788 3884 6.157820 TGTGTAACCATGGAGATCCTAAATGA 59.842 38.462 21.47 0.00 34.36 2.57
3890 3986 2.369394 GAACCCCACATGTTCATCTCC 58.631 52.381 0.00 0.00 41.35 3.71
3970 4073 4.329801 GGCTGTGTGCAATTTAAATTAGGC 59.670 41.667 12.98 13.33 45.15 3.93
4019 4122 1.211212 TGAGATGGCAGGAATGACCAG 59.789 52.381 0.00 0.00 42.04 4.00
4038 4141 6.405842 GGACCACTAAAATAAAAGATGCCCTG 60.406 42.308 0.00 0.00 0.00 4.45
4113 4216 7.785033 ACAGGGAACATGGATTAAAATCATTC 58.215 34.615 0.00 3.42 37.15 2.67
4152 4255 2.002586 ACAAGCGACAGAAATGGATCG 58.997 47.619 0.00 0.00 37.63 3.69
4167 4270 3.125316 CAGGTCACGGAAAAGATACAAGC 59.875 47.826 0.00 0.00 0.00 4.01
4182 4497 1.607148 GTAAACCAAGTGCCAGGTCAC 59.393 52.381 6.02 6.02 37.07 3.67
4190 4505 3.006940 TGGATCATCGTAAACCAAGTGC 58.993 45.455 0.00 0.00 0.00 4.40
4202 4517 1.051008 TCCACCCTGATGGATCATCG 58.949 55.000 0.00 0.00 44.14 3.84
4485 4802 3.340034 TCTTATGTTACAAAGGCCCACG 58.660 45.455 0.00 0.00 0.00 4.94
4523 4840 2.760092 ACACATGCTTCTCTCTCCTCTC 59.240 50.000 0.00 0.00 0.00 3.20
4545 4870 6.591448 CAGCAACACCTTTTCTTTCTTTCTTT 59.409 34.615 0.00 0.00 0.00 2.52
4546 4871 6.101997 CAGCAACACCTTTTCTTTCTTTCTT 58.898 36.000 0.00 0.00 0.00 2.52
4547 4872 5.394553 CCAGCAACACCTTTTCTTTCTTTCT 60.395 40.000 0.00 0.00 0.00 2.52
4548 4873 4.805719 CCAGCAACACCTTTTCTTTCTTTC 59.194 41.667 0.00 0.00 0.00 2.62
4587 4912 4.102210 TCACAATCATCTCATCTTCCTCCC 59.898 45.833 0.00 0.00 0.00 4.30
4588 4913 5.287674 TCACAATCATCTCATCTTCCTCC 57.712 43.478 0.00 0.00 0.00 4.30
4589 4914 6.293516 GCAATCACAATCATCTCATCTTCCTC 60.294 42.308 0.00 0.00 0.00 3.71
4590 4915 5.531659 GCAATCACAATCATCTCATCTTCCT 59.468 40.000 0.00 0.00 0.00 3.36
4591 4916 5.298527 TGCAATCACAATCATCTCATCTTCC 59.701 40.000 0.00 0.00 0.00 3.46
4592 4917 6.038382 ACTGCAATCACAATCATCTCATCTTC 59.962 38.462 0.00 0.00 0.00 2.87
4593 4918 5.886474 ACTGCAATCACAATCATCTCATCTT 59.114 36.000 0.00 0.00 0.00 2.40
4594 4919 5.437946 ACTGCAATCACAATCATCTCATCT 58.562 37.500 0.00 0.00 0.00 2.90
4668 5012 5.471456 CCCATATCATAACACTTCTTCAGGC 59.529 44.000 0.00 0.00 0.00 4.85
4714 5058 2.236395 GCAGGAGAGCCCAGTTAAGTAA 59.764 50.000 0.00 0.00 37.41 2.24
4715 5059 1.831736 GCAGGAGAGCCCAGTTAAGTA 59.168 52.381 0.00 0.00 37.41 2.24
4716 5060 0.615850 GCAGGAGAGCCCAGTTAAGT 59.384 55.000 0.00 0.00 37.41 2.24
4717 5061 0.908198 AGCAGGAGAGCCCAGTTAAG 59.092 55.000 0.00 0.00 37.41 1.85
4776 5120 9.979578 AACAGCAGTTCAAAATGATATACAAAA 57.020 25.926 0.00 0.00 30.46 2.44
4777 5121 9.409312 CAACAGCAGTTCAAAATGATATACAAA 57.591 29.630 0.00 0.00 35.28 2.83
4779 5123 8.334263 TCAACAGCAGTTCAAAATGATATACA 57.666 30.769 0.00 0.00 35.28 2.29
4780 5124 9.065871 GTTCAACAGCAGTTCAAAATGATATAC 57.934 33.333 0.00 0.00 35.28 1.47
4782 5126 7.660112 TGTTCAACAGCAGTTCAAAATGATAT 58.340 30.769 0.00 0.00 35.28 1.63
4783 5127 7.036996 TGTTCAACAGCAGTTCAAAATGATA 57.963 32.000 0.00 0.00 35.28 2.15
4784 5128 5.904941 TGTTCAACAGCAGTTCAAAATGAT 58.095 33.333 0.00 0.00 35.28 2.45
4786 5130 5.521010 ACATGTTCAACAGCAGTTCAAAATG 59.479 36.000 7.14 7.14 35.28 2.32
4787 5131 5.663456 ACATGTTCAACAGCAGTTCAAAAT 58.337 33.333 0.00 0.00 35.28 1.82
4790 5134 7.390162 TGATATACATGTTCAACAGCAGTTCAA 59.610 33.333 2.30 0.00 35.28 2.69
4793 5137 6.881065 AGTGATATACATGTTCAACAGCAGTT 59.119 34.615 2.30 0.00 38.88 3.16
4794 5138 6.409704 AGTGATATACATGTTCAACAGCAGT 58.590 36.000 2.30 0.00 0.00 4.40
4795 5139 6.915544 AGTGATATACATGTTCAACAGCAG 57.084 37.500 2.30 0.00 0.00 4.24
4796 5140 7.174772 ACAAAGTGATATACATGTTCAACAGCA 59.825 33.333 2.30 0.00 30.38 4.41
4797 5141 7.530010 ACAAAGTGATATACATGTTCAACAGC 58.470 34.615 2.30 0.00 30.38 4.40
4802 5146 9.546428 CCAGATACAAAGTGATATACATGTTCA 57.454 33.333 2.30 0.00 34.65 3.18
4803 5147 9.764363 TCCAGATACAAAGTGATATACATGTTC 57.236 33.333 2.30 0.00 34.65 3.18
4871 5361 4.217118 CCTCCACTCCTCTCAAAACAAATG 59.783 45.833 0.00 0.00 0.00 2.32
4889 5379 2.371841 ACTAACATTGCTGACACCTCCA 59.628 45.455 0.00 0.00 0.00 3.86
4891 5381 3.815401 ACAACTAACATTGCTGACACCTC 59.185 43.478 0.00 0.00 32.47 3.85
4892 5382 3.565482 CACAACTAACATTGCTGACACCT 59.435 43.478 0.00 0.00 32.47 4.00
4899 5480 2.554032 GGCTCACACAACTAACATTGCT 59.446 45.455 0.00 0.00 32.47 3.91
4938 5519 2.405892 ACAGCAACAATTTCAGCGTC 57.594 45.000 0.00 0.00 0.00 5.19
4963 5544 0.603707 TCCTAAGCTGCCGCATATGC 60.604 55.000 18.08 18.08 39.10 3.14
5000 5581 1.187087 AACTAAGCGAGAGGGTGGAG 58.813 55.000 0.00 0.00 0.00 3.86
5006 5587 2.924290 CGGAAGAAAACTAAGCGAGAGG 59.076 50.000 0.00 0.00 0.00 3.69
5101 5683 9.458374 CCGTAAACAACTCTTCATTTAACAAAT 57.542 29.630 0.00 0.00 0.00 2.32
5183 5767 5.744819 CGACCCACAAACGTTTTCTAAATTT 59.255 36.000 11.66 0.00 0.00 1.82
5196 5780 1.950909 TGATGTTTCCGACCCACAAAC 59.049 47.619 0.00 0.00 0.00 2.93
5270 5857 5.348451 ACAAACATGTTGAAAGTTCACAAGC 59.652 36.000 12.82 0.00 36.83 4.01
5273 5860 5.047731 TCCACAAACATGTTGAAAGTTCACA 60.048 36.000 12.82 0.00 36.83 3.58
5403 5997 0.255890 ACCGTTTGCATAGGCCATCT 59.744 50.000 5.01 0.00 40.13 2.90
5422 6016 1.621317 TCCCACACAAGAATGACGCTA 59.379 47.619 0.00 0.00 0.00 4.26
5423 6017 0.396435 TCCCACACAAGAATGACGCT 59.604 50.000 0.00 0.00 0.00 5.07


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.