Multiple sequence alignment - TraesCS6B01G035100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G035100 chr6B 100.000 4192 0 0 1 4192 20918032 20922223 0.000000e+00 7742.0
1 TraesCS6B01G035100 chr6B 88.231 1300 133 14 999 2290 20821971 20823258 0.000000e+00 1535.0
2 TraesCS6B01G035100 chr6B 86.090 1294 157 17 999 2283 20999964 21001243 0.000000e+00 1371.0
3 TraesCS6B01G035100 chr6B 90.559 1038 93 3 999 2031 21039564 21040601 0.000000e+00 1369.0
4 TraesCS6B01G035100 chr6B 85.035 1303 170 18 999 2292 23173399 23172113 0.000000e+00 1303.0
5 TraesCS6B01G035100 chr6B 81.746 1008 142 28 2950 3941 21040789 21041770 0.000000e+00 804.0
6 TraesCS6B01G035100 chr6B 89.711 622 64 0 999 1620 20951139 20951760 0.000000e+00 795.0
7 TraesCS6B01G035100 chr6B 84.355 799 116 6 2949 3741 22907742 22906947 0.000000e+00 774.0
8 TraesCS6B01G035100 chr6B 82.786 883 129 19 2955 3824 20952570 20953442 0.000000e+00 767.0
9 TraesCS6B01G035100 chr6B 88.746 622 70 0 999 1620 20779557 20780178 0.000000e+00 761.0
10 TraesCS6B01G035100 chr6B 83.175 844 129 8 2957 3792 20780960 20781798 0.000000e+00 760.0
11 TraesCS6B01G035100 chr6B 83.095 840 127 8 2960 3792 21001463 21002294 0.000000e+00 750.0
12 TraesCS6B01G035100 chr6B 80.116 689 99 23 1620 2292 22908670 22908004 2.930000e-131 479.0
13 TraesCS6B01G035100 chr6B 100.000 189 0 0 2361 2549 643217265 643217453 2.400000e-92 350.0
14 TraesCS6B01G035100 chr6A 92.815 1364 98 0 999 2362 12405967 12407330 0.000000e+00 1977.0
15 TraesCS6B01G035100 chr6A 90.691 1418 71 18 2578 3960 12407341 12408732 0.000000e+00 1831.0
16 TraesCS6B01G035100 chr6A 100.000 187 0 0 2362 2548 447173316 447173502 3.100000e-91 346.0
17 TraesCS6B01G035100 chr6A 100.000 101 0 0 3957 4057 452951866 452951966 1.990000e-43 187.0
18 TraesCS6B01G035100 chr6A 91.111 135 12 0 4058 4192 12408728 12408862 2.570000e-42 183.0
19 TraesCS6B01G035100 chr6D 90.725 1380 107 6 999 2362 11042030 11043404 0.000000e+00 1820.0
20 TraesCS6B01G035100 chr6D 89.363 1429 74 25 2570 3960 11043420 11044808 0.000000e+00 1725.0
21 TraesCS6B01G035100 chr6D 86.388 1293 151 18 999 2283 11085476 11086751 0.000000e+00 1389.0
22 TraesCS6B01G035100 chr6D 85.904 1206 139 12 999 2200 11055529 11056707 0.000000e+00 1256.0
23 TraesCS6B01G035100 chr6D 82.051 975 142 13 1233 2200 11023868 11024816 0.000000e+00 800.0
24 TraesCS6B01G035100 chr6D 83.146 890 127 19 2949 3825 10918597 10919476 0.000000e+00 791.0
25 TraesCS6B01G035100 chr6D 79.929 1131 173 34 1192 2311 10431451 10430364 0.000000e+00 782.0
26 TraesCS6B01G035100 chr6D 83.902 820 121 6 2981 3792 11086976 11087792 0.000000e+00 773.0
27 TraesCS6B01G035100 chr6D 88.424 622 71 1 999 1620 12494868 12494248 0.000000e+00 749.0
28 TraesCS6B01G035100 chr6D 87.460 622 78 0 999 1620 11109293 11109914 0.000000e+00 717.0
29 TraesCS6B01G035100 chr6D 86.795 621 80 2 999 1618 10938500 10939119 0.000000e+00 691.0
30 TraesCS6B01G035100 chr6D 77.897 561 79 22 1 543 10915784 10916317 1.460000e-79 307.0
31 TraesCS6B01G035100 chr6D 96.364 110 3 1 3952 4060 283218367 283218258 3.330000e-41 180.0
32 TraesCS6B01G035100 chr6D 88.889 135 14 1 4058 4192 11044804 11044937 9.320000e-37 165.0
33 TraesCS6B01G035100 chr6D 79.310 261 30 12 743 995 10938217 10938461 1.210000e-35 161.0
34 TraesCS6B01G035100 chr6D 90.625 64 5 1 2751 2813 11110544 11110607 2.690000e-12 84.2
35 TraesCS6B01G035100 chr2A 98.500 200 1 2 2352 2549 775435357 775435556 6.670000e-93 351.0
36 TraesCS6B01G035100 chr2A 97.561 205 2 2 2344 2548 90524562 90524361 8.630000e-92 348.0
37 TraesCS6B01G035100 chr2A 95.327 214 7 3 2366 2576 499902036 499902249 1.870000e-88 337.0
38 TraesCS6B01G035100 chr7B 98.980 196 0 1 2362 2557 246011368 246011561 2.400000e-92 350.0
39 TraesCS6B01G035100 chr7B 95.536 112 5 0 3946 4057 637858054 637858165 3.330000e-41 180.0
40 TraesCS6B01G035100 chr4A 98.980 196 1 1 2361 2556 338745707 338745901 2.400000e-92 350.0
41 TraesCS6B01G035100 chr4A 96.209 211 5 3 2356 2564 274757998 274757789 4.010000e-90 342.0
42 TraesCS6B01G035100 chr5B 95.349 215 4 5 2345 2556 553178983 553178772 1.870000e-88 337.0
43 TraesCS6B01G035100 chr5B 96.429 112 4 0 3946 4057 57510855 57510966 7.160000e-43 185.0
44 TraesCS6B01G035100 chr1D 99.038 104 1 0 3957 4060 254462580 254462477 1.990000e-43 187.0
45 TraesCS6B01G035100 chr1D 100.000 99 0 0 3959 4057 351025235 351025333 2.570000e-42 183.0
46 TraesCS6B01G035100 chrUn 99.010 101 1 0 3957 4057 345936052 345936152 9.260000e-42 182.0
47 TraesCS6B01G035100 chr4D 98.077 104 2 0 3957 4060 19903898 19903795 9.260000e-42 182.0
48 TraesCS6B01G035100 chr4D 98.077 104 2 0 3957 4060 270702734 270702631 9.260000e-42 182.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G035100 chr6B 20918032 20922223 4191 False 7742.000000 7742 100.0000 1 4192 1 chr6B.!!$F2 4191
1 TraesCS6B01G035100 chr6B 20821971 20823258 1287 False 1535.000000 1535 88.2310 999 2290 1 chr6B.!!$F1 1291
2 TraesCS6B01G035100 chr6B 23172113 23173399 1286 True 1303.000000 1303 85.0350 999 2292 1 chr6B.!!$R1 1293
3 TraesCS6B01G035100 chr6B 21039564 21041770 2206 False 1086.500000 1369 86.1525 999 3941 2 chr6B.!!$F7 2942
4 TraesCS6B01G035100 chr6B 20999964 21002294 2330 False 1060.500000 1371 84.5925 999 3792 2 chr6B.!!$F6 2793
5 TraesCS6B01G035100 chr6B 20951139 20953442 2303 False 781.000000 795 86.2485 999 3824 2 chr6B.!!$F5 2825
6 TraesCS6B01G035100 chr6B 20779557 20781798 2241 False 760.500000 761 85.9605 999 3792 2 chr6B.!!$F4 2793
7 TraesCS6B01G035100 chr6B 22906947 22908670 1723 True 626.500000 774 82.2355 1620 3741 2 chr6B.!!$R2 2121
8 TraesCS6B01G035100 chr6A 12405967 12408862 2895 False 1330.333333 1977 91.5390 999 4192 3 chr6A.!!$F3 3193
9 TraesCS6B01G035100 chr6D 11055529 11056707 1178 False 1256.000000 1256 85.9040 999 2200 1 chr6D.!!$F2 1201
10 TraesCS6B01G035100 chr6D 11042030 11044937 2907 False 1236.666667 1820 89.6590 999 4192 3 chr6D.!!$F5 3193
11 TraesCS6B01G035100 chr6D 11085476 11087792 2316 False 1081.000000 1389 85.1450 999 3792 2 chr6D.!!$F6 2793
12 TraesCS6B01G035100 chr6D 11023868 11024816 948 False 800.000000 800 82.0510 1233 2200 1 chr6D.!!$F1 967
13 TraesCS6B01G035100 chr6D 10430364 10431451 1087 True 782.000000 782 79.9290 1192 2311 1 chr6D.!!$R1 1119
14 TraesCS6B01G035100 chr6D 12494248 12494868 620 True 749.000000 749 88.4240 999 1620 1 chr6D.!!$R2 621
15 TraesCS6B01G035100 chr6D 10915784 10919476 3692 False 549.000000 791 80.5215 1 3825 2 chr6D.!!$F3 3824
16 TraesCS6B01G035100 chr6D 10938217 10939119 902 False 426.000000 691 83.0525 743 1618 2 chr6D.!!$F4 875
17 TraesCS6B01G035100 chr6D 11109293 11110607 1314 False 400.600000 717 89.0425 999 2813 2 chr6D.!!$F7 1814

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
750 791 0.032912 TACAGTCTATGGCCGGGTCA 60.033 55.0 2.64 2.64 0.0 4.02 F
846 892 0.042581 TGCTCCACCCACCAGATCTA 59.957 55.0 0.00 0.00 0.0 1.98 F
2459 2765 0.248289 GTACGCAGCCTTTCCCTACA 59.752 55.0 0.00 0.00 0.0 2.74 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2510 2816 0.111253 AGTGGTAAAGCTGCTGCCTT 59.889 50.0 12.44 8.34 40.80 4.35 R
2511 2817 0.607489 CAGTGGTAAAGCTGCTGCCT 60.607 55.0 12.44 2.45 40.80 4.75 R
4031 4584 0.106819 CCAGGCAAATCCTCTCCCAG 60.107 60.0 0.00 0.00 45.52 4.45 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 1.446907 CCAAGTCAGAAATCGCTGCT 58.553 50.000 0.00 0.00 35.86 4.24
25 26 1.396301 CAAGTCAGAAATCGCTGCTCC 59.604 52.381 0.00 0.00 35.86 4.70
28 29 0.543277 TCAGAAATCGCTGCTCCCAT 59.457 50.000 0.00 0.00 35.86 4.00
29 30 1.065199 TCAGAAATCGCTGCTCCCATT 60.065 47.619 0.00 0.00 35.86 3.16
40 41 1.965754 GCTCCCATTCCTCGTGCTCT 61.966 60.000 0.00 0.00 0.00 4.09
41 42 0.179089 CTCCCATTCCTCGTGCTCTG 60.179 60.000 0.00 0.00 0.00 3.35
42 43 0.904865 TCCCATTCCTCGTGCTCTGT 60.905 55.000 0.00 0.00 0.00 3.41
51 52 0.317160 TCGTGCTCTGTTGGTTCGAT 59.683 50.000 0.00 0.00 0.00 3.59
58 59 3.861263 GTTGGTTCGATCCGCCGC 61.861 66.667 7.99 0.00 0.00 6.53
90 91 4.323477 CGGTCAGGTTTCCCGGCA 62.323 66.667 0.00 0.00 38.09 5.69
104 105 3.365265 GGCAGTTGGGACTTGGCG 61.365 66.667 0.00 0.00 32.54 5.69
105 106 4.043200 GCAGTTGGGACTTGGCGC 62.043 66.667 0.00 0.00 32.54 6.53
106 107 3.726517 CAGTTGGGACTTGGCGCG 61.727 66.667 0.00 0.00 32.54 6.86
107 108 3.936203 AGTTGGGACTTGGCGCGA 61.936 61.111 12.10 0.00 29.87 5.87
108 109 2.975799 GTTGGGACTTGGCGCGAA 60.976 61.111 12.10 4.35 0.00 4.70
109 110 2.668212 TTGGGACTTGGCGCGAAG 60.668 61.111 27.76 27.76 0.00 3.79
110 111 3.171828 TTGGGACTTGGCGCGAAGA 62.172 57.895 34.48 12.76 0.00 2.87
111 112 3.119096 GGGACTTGGCGCGAAGAC 61.119 66.667 34.48 28.09 0.00 3.01
142 155 3.900892 CGATGGGAGTCGGACGGG 61.901 72.222 1.89 0.00 37.94 5.28
150 163 4.131088 GTCGGACGGGGAGCTGTC 62.131 72.222 0.00 0.00 0.00 3.51
187 200 4.570663 GGTGGATCGGTCGCGGAG 62.571 72.222 6.13 0.00 0.00 4.63
188 201 4.570663 GTGGATCGGTCGCGGAGG 62.571 72.222 6.13 0.00 0.00 4.30
254 267 3.557479 TCGTCGTCGGTCCGATCG 61.557 66.667 18.75 20.96 39.34 3.69
256 269 2.879070 CGTCGTCGGTCCGATCGAT 61.879 63.158 28.72 0.00 39.68 3.59
258 271 0.795085 GTCGTCGGTCCGATCGATAT 59.205 55.000 28.72 0.00 39.68 1.63
267 280 4.913126 GATCGATATCGGGTGCCC 57.087 61.111 24.12 0.00 40.29 5.36
268 281 2.277858 GATCGATATCGGGTGCCCT 58.722 57.895 24.12 1.85 40.29 5.19
270 283 1.258445 ATCGATATCGGGTGCCCTCC 61.258 60.000 24.12 0.00 40.29 4.30
327 340 0.098728 CGTAGATTTTGGCTTGGGCG 59.901 55.000 0.00 0.00 39.81 6.13
331 344 0.108662 GATTTTGGCTTGGGCGAAGG 60.109 55.000 11.34 0.00 37.46 3.46
344 357 4.415332 GAAGGCCGACGTCGCTGA 62.415 66.667 31.73 0.00 38.18 4.26
355 368 2.668457 GACGTCGCTGATGTTCAAAGAT 59.332 45.455 0.00 0.00 31.35 2.40
356 369 3.067106 ACGTCGCTGATGTTCAAAGATT 58.933 40.909 0.00 0.00 0.00 2.40
368 381 4.511454 TGTTCAAAGATTCAGACAAGTCCG 59.489 41.667 0.00 0.00 0.00 4.79
369 382 4.336889 TCAAAGATTCAGACAAGTCCGT 57.663 40.909 0.00 0.00 0.00 4.69
374 387 3.574396 AGATTCAGACAAGTCCGTTCAGA 59.426 43.478 0.00 0.00 0.00 3.27
379 392 2.894126 AGACAAGTCCGTTCAGACTGAT 59.106 45.455 5.87 0.00 46.44 2.90
389 403 1.222936 CAGACTGATCCCCTGCACC 59.777 63.158 0.00 0.00 0.00 5.01
411 425 2.507102 AAGACGACGCGATGCCAG 60.507 61.111 15.93 0.00 0.00 4.85
420 434 1.138883 GCGATGCCAGTCGTCACTA 59.861 57.895 5.38 0.00 43.27 2.74
422 436 0.170339 CGATGCCAGTCGTCACTACA 59.830 55.000 0.00 0.00 36.88 2.74
427 441 1.469940 GCCAGTCGTCACTACATCAGG 60.470 57.143 0.00 0.00 0.00 3.86
429 443 3.014623 CCAGTCGTCACTACATCAGGTA 58.985 50.000 0.00 0.00 0.00 3.08
432 446 4.096532 CAGTCGTCACTACATCAGGTACAT 59.903 45.833 0.00 0.00 0.00 2.29
433 447 4.096532 AGTCGTCACTACATCAGGTACATG 59.903 45.833 0.00 0.00 0.00 3.21
434 448 4.095932 GTCGTCACTACATCAGGTACATGA 59.904 45.833 13.29 13.29 0.00 3.07
435 449 4.703093 TCGTCACTACATCAGGTACATGAA 59.297 41.667 15.00 0.00 31.76 2.57
436 450 5.359860 TCGTCACTACATCAGGTACATGAAT 59.640 40.000 15.00 8.48 31.76 2.57
437 451 5.687730 CGTCACTACATCAGGTACATGAATC 59.312 44.000 15.00 0.00 31.76 2.52
438 452 5.986135 GTCACTACATCAGGTACATGAATCC 59.014 44.000 15.00 0.00 31.76 3.01
439 453 5.660864 TCACTACATCAGGTACATGAATCCA 59.339 40.000 15.00 0.00 31.76 3.41
440 454 6.327365 TCACTACATCAGGTACATGAATCCAT 59.673 38.462 15.00 0.00 31.76 3.41
441 455 6.648310 CACTACATCAGGTACATGAATCCATC 59.352 42.308 15.00 0.00 31.76 3.51
442 456 5.635278 ACATCAGGTACATGAATCCATCA 57.365 39.130 15.00 0.00 43.67 3.07
443 457 5.618236 ACATCAGGTACATGAATCCATCAG 58.382 41.667 15.00 0.63 42.53 2.90
444 458 4.077300 TCAGGTACATGAATCCATCAGC 57.923 45.455 7.95 0.00 42.53 4.26
447 461 8.654577 ATCAGGTACATGAATCCATCAGCTGG 62.655 46.154 15.00 0.00 42.53 4.85
448 462 3.434167 GGTACATGAATCCATCAGCTGGT 60.434 47.826 15.13 2.68 46.08 4.00
449 463 2.928334 ACATGAATCCATCAGCTGGTC 58.072 47.619 15.13 2.99 46.08 4.02
450 464 2.240414 ACATGAATCCATCAGCTGGTCA 59.760 45.455 15.13 8.49 46.08 4.02
451 465 3.284617 CATGAATCCATCAGCTGGTCAA 58.715 45.455 15.13 0.00 46.08 3.18
452 466 2.995283 TGAATCCATCAGCTGGTCAAG 58.005 47.619 15.13 0.00 46.08 3.02
453 467 2.306805 TGAATCCATCAGCTGGTCAAGT 59.693 45.455 15.13 0.00 46.08 3.16
454 468 2.414994 ATCCATCAGCTGGTCAAGTG 57.585 50.000 15.13 3.81 46.08 3.16
455 469 1.059098 TCCATCAGCTGGTCAAGTGT 58.941 50.000 15.13 0.00 46.08 3.55
456 470 1.162698 CCATCAGCTGGTCAAGTGTG 58.837 55.000 15.13 0.00 40.49 3.82
458 472 2.497138 CATCAGCTGGTCAAGTGTGAA 58.503 47.619 15.13 0.00 34.87 3.18
460 474 0.583438 CAGCTGGTCAAGTGTGAACG 59.417 55.000 5.57 0.00 45.20 3.95
461 475 0.178068 AGCTGGTCAAGTGTGAACGT 59.822 50.000 0.00 0.00 45.20 3.99
462 476 0.582005 GCTGGTCAAGTGTGAACGTC 59.418 55.000 0.00 0.00 45.20 4.34
463 477 1.217882 CTGGTCAAGTGTGAACGTCC 58.782 55.000 0.00 0.00 45.20 4.79
464 478 0.537653 TGGTCAAGTGTGAACGTCCA 59.462 50.000 0.00 0.00 45.20 4.02
466 480 1.597663 GGTCAAGTGTGAACGTCCAAG 59.402 52.381 0.00 0.00 34.87 3.61
467 481 2.546778 GTCAAGTGTGAACGTCCAAGA 58.453 47.619 0.00 0.00 34.87 3.02
468 482 2.284417 GTCAAGTGTGAACGTCCAAGAC 59.716 50.000 0.00 0.00 34.87 3.01
477 491 3.538841 GTCCAAGACGACGCTGTG 58.461 61.111 0.00 0.00 0.00 3.66
478 492 2.022129 GTCCAAGACGACGCTGTGG 61.022 63.158 0.00 0.00 0.00 4.17
486 501 2.029666 GACGCTGTGGCACTCACT 59.970 61.111 19.83 0.00 46.20 3.41
495 510 0.676184 TGGCACTCACTCACTCACTC 59.324 55.000 0.00 0.00 0.00 3.51
508 523 3.132824 TCACTCACTCTTCTTGCTGTTCA 59.867 43.478 0.00 0.00 0.00 3.18
510 525 4.152045 CACTCACTCTTCTTGCTGTTCATC 59.848 45.833 0.00 0.00 0.00 2.92
516 531 6.002704 ACTCTTCTTGCTGTTCATCTGAAAT 58.997 36.000 0.00 0.00 35.58 2.17
520 535 8.671921 TCTTCTTGCTGTTCATCTGAAATAATC 58.328 33.333 0.00 0.00 35.58 1.75
521 536 8.571461 TTCTTGCTGTTCATCTGAAATAATCT 57.429 30.769 0.00 0.00 35.58 2.40
528 543 9.258826 CTGTTCATCTGAAATAATCTCAGGTAG 57.741 37.037 0.00 0.00 40.65 3.18
529 544 8.762645 TGTTCATCTGAAATAATCTCAGGTAGT 58.237 33.333 0.00 0.00 40.65 2.73
543 558 7.113658 TCTCAGGTAGTATCAATTTCTCACC 57.886 40.000 0.00 0.00 0.00 4.02
545 560 5.655090 TCAGGTAGTATCAATTTCTCACCGA 59.345 40.000 0.00 0.00 0.00 4.69
546 561 5.749109 CAGGTAGTATCAATTTCTCACCGAC 59.251 44.000 0.00 0.00 0.00 4.79
557 598 0.597637 CTCACCGACGCTCACTGTTT 60.598 55.000 0.00 0.00 0.00 2.83
593 634 4.564041 TGCTCTCTCTGTTCATCTGAAAC 58.436 43.478 0.00 0.00 35.58 2.78
594 635 4.039609 TGCTCTCTCTGTTCATCTGAAACA 59.960 41.667 0.00 0.00 35.58 2.83
614 655 6.707440 AACAATGTCGGGCATCAATTATTA 57.293 33.333 0.00 0.00 36.67 0.98
619 660 5.056480 TGTCGGGCATCAATTATTACTCTG 58.944 41.667 0.00 0.00 0.00 3.35
622 663 4.319766 CGGGCATCAATTATTACTCTGCAC 60.320 45.833 0.00 0.00 0.00 4.57
626 667 5.973565 GCATCAATTATTACTCTGCACCAAC 59.026 40.000 0.00 0.00 0.00 3.77
631 672 2.949177 TTACTCTGCACCAACCATGT 57.051 45.000 0.00 0.00 0.00 3.21
633 674 0.473755 ACTCTGCACCAACCATGTCA 59.526 50.000 0.00 0.00 0.00 3.58
634 675 1.162698 CTCTGCACCAACCATGTCAG 58.837 55.000 0.00 0.00 0.00 3.51
635 676 0.250858 TCTGCACCAACCATGTCAGG 60.251 55.000 0.00 0.00 0.00 3.86
637 678 0.767998 TGCACCAACCATGTCAGGTA 59.232 50.000 0.54 0.00 42.25 3.08
638 679 1.143889 TGCACCAACCATGTCAGGTAA 59.856 47.619 0.54 0.00 42.25 2.85
639 680 1.539827 GCACCAACCATGTCAGGTAAC 59.460 52.381 0.54 0.00 42.25 2.50
641 682 2.552315 CACCAACCATGTCAGGTAACAC 59.448 50.000 0.54 0.00 42.25 3.32
642 683 2.441750 ACCAACCATGTCAGGTAACACT 59.558 45.455 0.00 0.00 42.25 3.55
643 684 2.813754 CCAACCATGTCAGGTAACACTG 59.186 50.000 0.00 0.00 42.25 3.66
644 685 2.185004 ACCATGTCAGGTAACACTGC 57.815 50.000 0.00 0.00 40.98 4.40
645 686 1.419762 ACCATGTCAGGTAACACTGCA 59.580 47.619 0.00 0.00 40.98 4.41
646 687 2.040278 ACCATGTCAGGTAACACTGCAT 59.960 45.455 0.00 0.00 40.98 3.96
647 688 2.679837 CCATGTCAGGTAACACTGCATC 59.320 50.000 0.00 0.00 38.36 3.91
648 689 3.337358 CATGTCAGGTAACACTGCATCA 58.663 45.455 0.00 0.00 38.36 3.07
649 690 3.483808 TGTCAGGTAACACTGCATCAA 57.516 42.857 0.00 0.00 38.36 2.57
650 691 4.019792 TGTCAGGTAACACTGCATCAAT 57.980 40.909 0.00 0.00 38.36 2.57
652 693 3.753272 GTCAGGTAACACTGCATCAATGT 59.247 43.478 0.00 0.00 38.36 2.71
653 694 4.002982 TCAGGTAACACTGCATCAATGTC 58.997 43.478 0.00 0.00 38.36 3.06
654 695 3.002791 AGGTAACACTGCATCAATGTCG 58.997 45.455 0.00 0.00 41.41 4.35
656 697 1.527034 AACACTGCATCAATGTCGCT 58.473 45.000 0.00 0.00 0.00 4.93
657 698 0.800631 ACACTGCATCAATGTCGCTG 59.199 50.000 0.00 0.00 0.00 5.18
659 700 1.669265 CACTGCATCAATGTCGCTGAT 59.331 47.619 9.49 0.00 33.73 2.90
670 711 8.613060 ATCAATGTCGCTGATGAATTATTACT 57.387 30.769 0.00 0.00 32.23 2.24
671 712 8.076714 TCAATGTCGCTGATGAATTATTACTC 57.923 34.615 0.00 0.00 0.00 2.59
672 713 7.928167 TCAATGTCGCTGATGAATTATTACTCT 59.072 33.333 0.00 0.00 0.00 3.24
673 714 7.881643 ATGTCGCTGATGAATTATTACTCTC 57.118 36.000 0.00 0.00 0.00 3.20
674 715 6.216569 TGTCGCTGATGAATTATTACTCTCC 58.783 40.000 0.00 0.00 0.00 3.71
675 716 6.183360 TGTCGCTGATGAATTATTACTCTCCA 60.183 38.462 0.00 0.00 0.00 3.86
676 717 6.870965 GTCGCTGATGAATTATTACTCTCCAT 59.129 38.462 0.00 0.00 0.00 3.41
677 718 7.062839 GTCGCTGATGAATTATTACTCTCCATC 59.937 40.741 0.00 0.00 0.00 3.51
678 719 6.870439 CGCTGATGAATTATTACTCTCCATCA 59.130 38.462 0.00 0.00 37.26 3.07
679 720 7.386025 CGCTGATGAATTATTACTCTCCATCAA 59.614 37.037 0.00 0.00 38.55 2.57
680 721 8.502387 GCTGATGAATTATTACTCTCCATCAAC 58.498 37.037 0.00 0.00 38.55 3.18
681 722 8.908786 TGATGAATTATTACTCTCCATCAACC 57.091 34.615 0.00 0.00 36.85 3.77
682 723 8.493607 TGATGAATTATTACTCTCCATCAACCA 58.506 33.333 0.00 0.00 36.85 3.67
683 724 9.512588 GATGAATTATTACTCTCCATCAACCAT 57.487 33.333 0.00 0.00 31.85 3.55
684 725 8.681486 TGAATTATTACTCTCCATCAACCATG 57.319 34.615 0.00 0.00 0.00 3.66
685 726 8.274322 TGAATTATTACTCTCCATCAACCATGT 58.726 33.333 0.00 0.00 0.00 3.21
686 727 8.682936 AATTATTACTCTCCATCAACCATGTC 57.317 34.615 0.00 0.00 0.00 3.06
687 728 5.698741 ATTACTCTCCATCAACCATGTCA 57.301 39.130 0.00 0.00 0.00 3.58
688 729 3.623906 ACTCTCCATCAACCATGTCAG 57.376 47.619 0.00 0.00 0.00 3.51
689 730 2.238144 ACTCTCCATCAACCATGTCAGG 59.762 50.000 0.00 0.00 0.00 3.86
690 731 2.238144 CTCTCCATCAACCATGTCAGGT 59.762 50.000 0.00 0.00 45.91 4.00
691 732 3.449918 TCTCCATCAACCATGTCAGGTA 58.550 45.455 0.00 0.00 42.25 3.08
692 733 3.452264 TCTCCATCAACCATGTCAGGTAG 59.548 47.826 0.00 0.00 42.25 3.18
693 734 2.092968 TCCATCAACCATGTCAGGTAGC 60.093 50.000 0.00 0.00 42.25 3.58
694 735 2.356022 CCATCAACCATGTCAGGTAGCA 60.356 50.000 0.00 0.00 42.25 3.49
695 736 3.548770 CATCAACCATGTCAGGTAGCAT 58.451 45.455 0.00 0.00 42.25 3.79
696 737 3.719268 TCAACCATGTCAGGTAGCATT 57.281 42.857 0.00 0.00 42.25 3.56
697 738 3.346315 TCAACCATGTCAGGTAGCATTG 58.654 45.455 0.00 0.00 42.25 2.82
698 739 1.755179 ACCATGTCAGGTAGCATTGC 58.245 50.000 0.00 0.00 40.98 3.56
699 740 1.004628 ACCATGTCAGGTAGCATTGCA 59.995 47.619 11.91 0.00 40.98 4.08
700 741 2.304092 CCATGTCAGGTAGCATTGCAT 58.696 47.619 11.91 0.00 0.00 3.96
701 742 2.292569 CCATGTCAGGTAGCATTGCATC 59.707 50.000 11.91 3.07 0.00 3.91
702 743 2.785540 TGTCAGGTAGCATTGCATCA 57.214 45.000 11.91 0.00 0.00 3.07
703 744 3.070476 TGTCAGGTAGCATTGCATCAA 57.930 42.857 11.91 0.00 0.00 2.57
704 745 3.623703 TGTCAGGTAGCATTGCATCAAT 58.376 40.909 11.91 0.00 34.04 2.57
718 759 2.223876 GCATCAATGTCGCCCATCAATT 60.224 45.455 0.00 0.00 31.75 2.32
722 763 6.570186 GCATCAATGTCGCCCATCAATTATTA 60.570 38.462 0.00 0.00 31.75 0.98
723 764 6.312399 TCAATGTCGCCCATCAATTATTAC 57.688 37.500 0.00 0.00 31.75 1.89
724 765 6.061441 TCAATGTCGCCCATCAATTATTACT 58.939 36.000 0.00 0.00 31.75 2.24
725 766 6.204688 TCAATGTCGCCCATCAATTATTACTC 59.795 38.462 0.00 0.00 31.75 2.59
726 767 5.290493 TGTCGCCCATCAATTATTACTCT 57.710 39.130 0.00 0.00 0.00 3.24
727 768 5.056480 TGTCGCCCATCAATTATTACTCTG 58.944 41.667 0.00 0.00 0.00 3.35
728 769 4.065088 TCGCCCATCAATTATTACTCTGC 58.935 43.478 0.00 0.00 0.00 4.26
730 771 4.275689 CGCCCATCAATTATTACTCTGCAA 59.724 41.667 0.00 0.00 0.00 4.08
731 772 5.048504 CGCCCATCAATTATTACTCTGCAAT 60.049 40.000 0.00 0.00 0.00 3.56
732 773 6.149308 CGCCCATCAATTATTACTCTGCAATA 59.851 38.462 0.00 0.00 0.00 1.90
734 775 7.040478 GCCCATCAATTATTACTCTGCAATACA 60.040 37.037 0.00 0.00 0.00 2.29
745 786 2.138320 CTGCAATACAGTCTATGGCCG 58.862 52.381 0.00 0.00 41.86 6.13
746 787 1.202639 TGCAATACAGTCTATGGCCGG 60.203 52.381 0.00 0.00 0.00 6.13
747 788 1.878102 GCAATACAGTCTATGGCCGGG 60.878 57.143 2.18 0.00 0.00 5.73
748 789 1.416401 CAATACAGTCTATGGCCGGGT 59.584 52.381 2.18 0.00 0.00 5.28
749 790 1.339097 ATACAGTCTATGGCCGGGTC 58.661 55.000 2.18 0.00 0.00 4.46
750 791 0.032912 TACAGTCTATGGCCGGGTCA 60.033 55.000 2.64 2.64 0.00 4.02
751 792 1.144057 CAGTCTATGGCCGGGTCAC 59.856 63.158 1.98 0.00 0.00 3.67
752 793 1.001760 AGTCTATGGCCGGGTCACT 59.998 57.895 1.98 0.00 0.00 3.41
753 794 0.617820 AGTCTATGGCCGGGTCACTT 60.618 55.000 1.98 0.00 0.00 3.16
754 795 1.117150 GTCTATGGCCGGGTCACTTA 58.883 55.000 1.98 0.00 0.00 2.24
755 796 1.692519 GTCTATGGCCGGGTCACTTAT 59.307 52.381 1.98 0.00 0.00 1.73
756 797 2.104281 GTCTATGGCCGGGTCACTTATT 59.896 50.000 1.98 0.00 0.00 1.40
757 798 3.322828 GTCTATGGCCGGGTCACTTATTA 59.677 47.826 1.98 0.00 0.00 0.98
758 799 2.632987 ATGGCCGGGTCACTTATTAC 57.367 50.000 1.98 0.00 0.00 1.89
763 804 2.740904 GCCGGGTCACTTATTACACTCC 60.741 54.545 2.18 0.00 0.00 3.85
800 842 1.274703 CCATAGCACCACCACCTCCT 61.275 60.000 0.00 0.00 0.00 3.69
801 843 0.179000 CATAGCACCACCACCTCCTC 59.821 60.000 0.00 0.00 0.00 3.71
807 849 2.930019 CACCACCTCCTCCCTGCA 60.930 66.667 0.00 0.00 0.00 4.41
809 851 4.106925 CCACCTCCTCCCTGCAGC 62.107 72.222 8.66 0.00 0.00 5.25
810 852 3.007920 CACCTCCTCCCTGCAGCT 61.008 66.667 8.66 0.00 0.00 4.24
813 859 2.583520 CTCCTCCCTGCAGCTGAC 59.416 66.667 20.43 9.67 0.00 3.51
846 892 0.042581 TGCTCCACCCACCAGATCTA 59.957 55.000 0.00 0.00 0.00 1.98
860 906 3.062763 CAGATCTAAGCTACCATTGGCG 58.937 50.000 1.54 0.00 0.00 5.69
863 909 1.202533 TCTAAGCTACCATTGGCGCTC 60.203 52.381 17.40 0.00 32.85 5.03
989 1039 2.476320 GGAAATCGCCCTGCAGCTC 61.476 63.158 8.66 0.30 0.00 4.09
997 1047 4.749310 CCTGCAGCTCGGCGTTCT 62.749 66.667 8.66 1.91 36.28 3.01
1084 1169 1.687612 CAGCAGATTGGGGTCCTGT 59.312 57.895 0.00 0.00 0.00 4.00
1124 1209 1.063417 CCTCATGGATTTTGGCCTCCT 60.063 52.381 3.32 0.00 34.57 3.69
1125 1210 2.029623 CTCATGGATTTTGGCCTCCTG 58.970 52.381 3.32 3.33 32.47 3.86
1134 1219 1.544825 TTGGCCTCCTGTCCGAGAAG 61.545 60.000 3.32 0.00 30.97 2.85
1142 1227 1.757118 CCTGTCCGAGAAGAAGCCATA 59.243 52.381 0.00 0.00 0.00 2.74
1179 1264 2.362503 AGCCCAGGTGATCGACGA 60.363 61.111 0.00 0.00 0.00 4.20
1319 1404 1.746615 CCAGCATTGCTACTGCGGT 60.747 57.895 11.55 2.42 44.38 5.68
1551 1636 2.811410 AGGCTGATGCATCCTTTCAAA 58.189 42.857 23.67 2.32 41.91 2.69
1673 1914 6.427853 AGCTTGGAAAGGCAATTTTATGAAAC 59.572 34.615 0.00 0.00 46.35 2.78
1705 1946 1.404035 ACGTTGGAAAGCCAGAACAAC 59.596 47.619 0.00 0.00 46.91 3.32
1820 2068 5.705905 GCTACCTGGTTATCATAAATGACCC 59.294 44.000 3.84 0.00 40.03 4.46
2027 2279 6.651755 AAGTCTGTTTCTTGCATTGTTTTG 57.348 33.333 0.00 0.00 0.00 2.44
2031 2286 7.489113 AGTCTGTTTCTTGCATTGTTTTGTTAG 59.511 33.333 0.00 0.00 0.00 2.34
2132 2392 2.622942 CAACATGGGCAGTGTTAGTGTT 59.377 45.455 6.44 0.00 37.69 3.32
2166 2432 2.268302 ACGATGACGAAGCAAAGGCTC 61.268 52.381 0.00 0.00 46.10 4.70
2362 2668 2.634600 ACTGTGTACGAACAAGCCAAA 58.365 42.857 0.00 0.00 37.36 3.28
2388 2694 4.413928 GGCAACCTGGTGCATGTA 57.586 55.556 18.44 0.00 46.81 2.29
2389 2695 2.183409 GGCAACCTGGTGCATGTAG 58.817 57.895 18.44 0.00 46.81 2.74
2390 2696 1.508088 GCAACCTGGTGCATGTAGC 59.492 57.895 6.00 6.00 44.29 3.58
2391 2697 0.962356 GCAACCTGGTGCATGTAGCT 60.962 55.000 14.15 0.00 44.29 3.32
2392 2698 1.089920 CAACCTGGTGCATGTAGCTC 58.910 55.000 14.15 0.00 45.94 4.09
2398 2704 1.450312 GTGCATGTAGCTCCCGCTT 60.450 57.895 0.00 0.00 46.47 4.68
2399 2705 1.450134 TGCATGTAGCTCCCGCTTG 60.450 57.895 0.00 0.00 46.47 4.01
2400 2706 2.828128 GCATGTAGCTCCCGCTTGC 61.828 63.158 0.00 0.00 46.47 4.01
2401 2707 2.202932 ATGTAGCTCCCGCTTGCG 60.203 61.111 8.14 8.14 46.47 4.85
2404 2710 4.819761 TAGCTCCCGCTTGCGCAG 62.820 66.667 11.31 6.32 46.47 5.18
2416 2722 4.785453 GCGCAGGGTCCAGGGAAG 62.785 72.222 0.30 0.00 0.00 3.46
2417 2723 4.101448 CGCAGGGTCCAGGGAAGG 62.101 72.222 0.00 0.00 0.00 3.46
2418 2724 3.732849 GCAGGGTCCAGGGAAGGG 61.733 72.222 0.00 0.00 0.00 3.95
2419 2725 2.204151 CAGGGTCCAGGGAAGGGT 60.204 66.667 0.00 0.00 0.00 4.34
2420 2726 2.125225 AGGGTCCAGGGAAGGGTC 59.875 66.667 0.00 0.00 0.00 4.46
2421 2727 3.015753 GGGTCCAGGGAAGGGTCC 61.016 72.222 0.00 0.00 44.10 4.46
2422 2728 3.400054 GGTCCAGGGAAGGGTCCG 61.400 72.222 0.00 0.00 46.04 4.79
2423 2729 2.284405 GTCCAGGGAAGGGTCCGA 60.284 66.667 0.00 0.00 46.04 4.55
2424 2730 2.284405 TCCAGGGAAGGGTCCGAC 60.284 66.667 0.00 0.00 46.04 4.79
2425 2731 3.400054 CCAGGGAAGGGTCCGACC 61.400 72.222 9.30 9.30 46.04 4.79
2426 2732 2.606519 CAGGGAAGGGTCCGACCA 60.607 66.667 19.43 0.00 46.04 4.02
2427 2733 2.606826 AGGGAAGGGTCCGACCAC 60.607 66.667 19.43 8.70 46.04 4.16
2428 2734 2.606826 GGGAAGGGTCCGACCACT 60.607 66.667 19.43 10.80 46.04 4.00
2429 2735 2.222013 GGGAAGGGTCCGACCACTT 61.222 63.158 19.43 17.88 46.04 3.16
2430 2736 1.759236 GGAAGGGTCCGACCACTTT 59.241 57.895 19.43 9.96 41.02 2.66
2431 2737 0.605589 GGAAGGGTCCGACCACTTTG 60.606 60.000 19.43 0.00 41.02 2.77
2432 2738 0.605589 GAAGGGTCCGACCACTTTGG 60.606 60.000 19.43 0.00 41.02 3.28
2433 2739 2.033602 GGGTCCGACCACTTTGGG 59.966 66.667 19.43 0.00 43.37 4.12
2434 2740 2.826003 GGGTCCGACCACTTTGGGT 61.826 63.158 19.43 0.00 43.37 4.51
2444 2750 4.996788 ACCACTTTGGGTCTATAGTACG 57.003 45.455 0.00 0.00 43.37 3.67
2445 2751 3.131755 ACCACTTTGGGTCTATAGTACGC 59.868 47.826 0.00 6.13 43.37 4.42
2446 2752 3.131577 CCACTTTGGGTCTATAGTACGCA 59.868 47.826 13.98 13.98 37.94 5.24
2447 2753 4.360563 CACTTTGGGTCTATAGTACGCAG 58.639 47.826 16.00 11.29 40.36 5.18
2448 2754 3.181478 ACTTTGGGTCTATAGTACGCAGC 60.181 47.826 16.00 2.07 40.36 5.25
2449 2755 1.325355 TGGGTCTATAGTACGCAGCC 58.675 55.000 13.98 8.23 35.18 4.85
2450 2756 1.133575 TGGGTCTATAGTACGCAGCCT 60.134 52.381 13.98 0.00 35.18 4.58
2451 2757 1.962100 GGGTCTATAGTACGCAGCCTT 59.038 52.381 0.00 0.00 0.00 4.35
2452 2758 2.364647 GGGTCTATAGTACGCAGCCTTT 59.635 50.000 0.00 0.00 0.00 3.11
2453 2759 3.552478 GGGTCTATAGTACGCAGCCTTTC 60.552 52.174 0.00 0.00 0.00 2.62
2454 2760 3.552478 GGTCTATAGTACGCAGCCTTTCC 60.552 52.174 0.00 0.00 0.00 3.13
2455 2761 2.626743 TCTATAGTACGCAGCCTTTCCC 59.373 50.000 0.00 0.00 0.00 3.97
2456 2762 1.497161 ATAGTACGCAGCCTTTCCCT 58.503 50.000 0.00 0.00 0.00 4.20
2457 2763 2.148446 TAGTACGCAGCCTTTCCCTA 57.852 50.000 0.00 0.00 0.00 3.53
2458 2764 0.535797 AGTACGCAGCCTTTCCCTAC 59.464 55.000 0.00 0.00 0.00 3.18
2459 2765 0.248289 GTACGCAGCCTTTCCCTACA 59.752 55.000 0.00 0.00 0.00 2.74
2460 2766 1.134491 GTACGCAGCCTTTCCCTACAT 60.134 52.381 0.00 0.00 0.00 2.29
2461 2767 0.328258 ACGCAGCCTTTCCCTACATT 59.672 50.000 0.00 0.00 0.00 2.71
2462 2768 1.271926 ACGCAGCCTTTCCCTACATTT 60.272 47.619 0.00 0.00 0.00 2.32
2463 2769 1.401905 CGCAGCCTTTCCCTACATTTC 59.598 52.381 0.00 0.00 0.00 2.17
2464 2770 2.728007 GCAGCCTTTCCCTACATTTCT 58.272 47.619 0.00 0.00 0.00 2.52
2465 2771 2.424956 GCAGCCTTTCCCTACATTTCTG 59.575 50.000 0.00 0.00 0.00 3.02
2466 2772 3.690460 CAGCCTTTCCCTACATTTCTGT 58.310 45.455 0.00 0.00 39.49 3.41
2467 2773 4.843728 CAGCCTTTCCCTACATTTCTGTA 58.156 43.478 0.00 0.00 36.79 2.74
2468 2774 5.253330 CAGCCTTTCCCTACATTTCTGTAA 58.747 41.667 0.00 0.00 37.41 2.41
2469 2775 5.355350 CAGCCTTTCCCTACATTTCTGTAAG 59.645 44.000 0.00 0.00 37.41 2.34
2470 2776 5.250774 AGCCTTTCCCTACATTTCTGTAAGA 59.749 40.000 0.00 0.00 44.68 2.10
2482 2788 3.685139 TCTGTAAGAGGCTGTTTCCAG 57.315 47.619 0.90 9.48 38.67 3.86
2483 2789 2.303022 TCTGTAAGAGGCTGTTTCCAGG 59.697 50.000 17.71 5.83 38.67 4.45
2484 2790 2.303022 CTGTAAGAGGCTGTTTCCAGGA 59.697 50.000 0.90 0.00 35.89 3.86
2485 2791 2.038557 TGTAAGAGGCTGTTTCCAGGAC 59.961 50.000 0.90 0.00 39.22 3.85
2486 2792 1.439543 AAGAGGCTGTTTCCAGGACT 58.560 50.000 0.00 0.00 39.22 3.85
2487 2793 1.439543 AGAGGCTGTTTCCAGGACTT 58.560 50.000 0.00 0.00 39.22 3.01
2488 2794 1.072965 AGAGGCTGTTTCCAGGACTTG 59.927 52.381 0.00 0.00 39.22 3.16
2489 2795 1.072331 GAGGCTGTTTCCAGGACTTGA 59.928 52.381 0.00 0.00 39.22 3.02
2490 2796 1.494721 AGGCTGTTTCCAGGACTTGAA 59.505 47.619 0.00 0.00 39.22 2.69
2491 2797 1.609072 GGCTGTTTCCAGGACTTGAAC 59.391 52.381 0.00 0.00 39.22 3.18
2492 2798 1.609072 GCTGTTTCCAGGACTTGAACC 59.391 52.381 0.00 0.00 39.22 3.62
2493 2799 2.230660 CTGTTTCCAGGACTTGAACCC 58.769 52.381 0.00 0.00 34.90 4.11
2494 2800 1.566703 TGTTTCCAGGACTTGAACCCA 59.433 47.619 0.00 0.00 0.00 4.51
2495 2801 2.176798 TGTTTCCAGGACTTGAACCCAT 59.823 45.455 0.00 0.00 0.00 4.00
2496 2802 2.558359 GTTTCCAGGACTTGAACCCATG 59.442 50.000 0.00 0.00 0.00 3.66
2497 2803 1.741028 TCCAGGACTTGAACCCATGA 58.259 50.000 0.00 0.00 0.00 3.07
2498 2804 1.351017 TCCAGGACTTGAACCCATGAC 59.649 52.381 0.00 0.00 0.00 3.06
2499 2805 1.614317 CCAGGACTTGAACCCATGACC 60.614 57.143 0.00 0.00 34.29 4.02
2500 2806 1.352352 CAGGACTTGAACCCATGACCT 59.648 52.381 0.00 0.00 40.96 3.85
2501 2807 1.630878 AGGACTTGAACCCATGACCTC 59.369 52.381 0.00 0.00 37.82 3.85
2502 2808 1.351017 GGACTTGAACCCATGACCTCA 59.649 52.381 0.00 0.00 32.45 3.86
2503 2809 2.025887 GGACTTGAACCCATGACCTCAT 60.026 50.000 0.00 0.00 36.96 2.90
2515 2821 2.154139 ACCTCATGGTCACAAGGCA 58.846 52.632 0.00 0.00 44.78 4.75
2516 2822 0.037303 ACCTCATGGTCACAAGGCAG 59.963 55.000 0.00 0.00 44.78 4.85
2517 2823 1.310933 CCTCATGGTCACAAGGCAGC 61.311 60.000 0.00 0.00 0.00 5.25
2518 2824 0.607217 CTCATGGTCACAAGGCAGCA 60.607 55.000 0.00 0.00 0.00 4.41
2519 2825 0.607217 TCATGGTCACAAGGCAGCAG 60.607 55.000 0.00 0.00 0.00 4.24
2520 2826 1.975407 ATGGTCACAAGGCAGCAGC 60.975 57.895 0.00 0.00 41.10 5.25
2521 2827 2.282040 GGTCACAAGGCAGCAGCT 60.282 61.111 0.00 0.00 41.70 4.24
2522 2828 1.900498 GGTCACAAGGCAGCAGCTT 60.900 57.895 0.00 0.00 41.70 3.74
2523 2829 1.458639 GGTCACAAGGCAGCAGCTTT 61.459 55.000 0.00 0.00 41.17 3.51
2524 2830 1.238439 GTCACAAGGCAGCAGCTTTA 58.762 50.000 0.00 0.00 38.07 1.85
2525 2831 1.068954 GTCACAAGGCAGCAGCTTTAC 60.069 52.381 0.00 0.00 38.07 2.01
2526 2832 0.242017 CACAAGGCAGCAGCTTTACC 59.758 55.000 0.00 0.00 38.07 2.85
2527 2833 0.178992 ACAAGGCAGCAGCTTTACCA 60.179 50.000 0.00 0.00 38.07 3.25
2528 2834 0.242017 CAAGGCAGCAGCTTTACCAC 59.758 55.000 0.00 0.00 38.07 4.16
2529 2835 0.111253 AAGGCAGCAGCTTTACCACT 59.889 50.000 0.00 0.00 38.40 4.00
2530 2836 0.607489 AGGCAGCAGCTTTACCACTG 60.607 55.000 0.00 0.00 41.70 3.66
2534 2840 2.870372 CAGCTTTACCACTGCGCC 59.130 61.111 4.18 0.00 0.00 6.53
2535 2841 1.965930 CAGCTTTACCACTGCGCCA 60.966 57.895 4.18 0.00 0.00 5.69
2536 2842 1.228124 AGCTTTACCACTGCGCCAA 60.228 52.632 4.18 0.00 0.00 4.52
2537 2843 1.210155 GCTTTACCACTGCGCCAAG 59.790 57.895 4.18 0.00 0.00 3.61
2538 2844 1.875963 CTTTACCACTGCGCCAAGG 59.124 57.895 4.18 6.21 0.00 3.61
2539 2845 2.200170 CTTTACCACTGCGCCAAGGC 62.200 60.000 4.18 0.00 37.85 4.35
2540 2846 2.690653 TTTACCACTGCGCCAAGGCT 62.691 55.000 4.18 0.00 39.32 4.58
2541 2847 3.605749 TACCACTGCGCCAAGGCTC 62.606 63.158 4.18 1.20 39.32 4.70
2553 2859 3.069778 AGGCTCCCCTTCACGAAC 58.930 61.111 0.00 0.00 38.74 3.95
2554 2860 1.841556 AGGCTCCCCTTCACGAACA 60.842 57.895 0.00 0.00 38.74 3.18
2555 2861 1.072505 GGCTCCCCTTCACGAACAA 59.927 57.895 0.00 0.00 0.00 2.83
2556 2862 0.955919 GGCTCCCCTTCACGAACAAG 60.956 60.000 0.00 0.00 0.00 3.16
2557 2863 1.578206 GCTCCCCTTCACGAACAAGC 61.578 60.000 0.00 0.00 0.00 4.01
2558 2864 0.955919 CTCCCCTTCACGAACAAGCC 60.956 60.000 0.00 0.00 0.00 4.35
2559 2865 1.228124 CCCCTTCACGAACAAGCCA 60.228 57.895 0.00 0.00 0.00 4.75
2560 2866 0.821711 CCCCTTCACGAACAAGCCAA 60.822 55.000 0.00 0.00 0.00 4.52
2561 2867 1.247567 CCCTTCACGAACAAGCCAAT 58.752 50.000 0.00 0.00 0.00 3.16
2562 2868 2.432444 CCCTTCACGAACAAGCCAATA 58.568 47.619 0.00 0.00 0.00 1.90
2563 2869 3.016736 CCCTTCACGAACAAGCCAATAT 58.983 45.455 0.00 0.00 0.00 1.28
2564 2870 4.196193 CCCTTCACGAACAAGCCAATATA 58.804 43.478 0.00 0.00 0.00 0.86
2565 2871 4.638421 CCCTTCACGAACAAGCCAATATAA 59.362 41.667 0.00 0.00 0.00 0.98
2566 2872 5.124776 CCCTTCACGAACAAGCCAATATAAA 59.875 40.000 0.00 0.00 0.00 1.40
2567 2873 6.258160 CCTTCACGAACAAGCCAATATAAAG 58.742 40.000 0.00 0.00 0.00 1.85
2568 2874 6.093495 CCTTCACGAACAAGCCAATATAAAGA 59.907 38.462 0.00 0.00 0.00 2.52
2599 2905 7.790823 AACAAACATCAAAATTTGAGGGAAG 57.209 32.000 21.83 13.62 45.11 3.46
2615 2921 3.652869 AGGGAAGGAAAACTGAGACATGA 59.347 43.478 0.00 0.00 0.00 3.07
2626 2948 8.824756 AAAACTGAGACATGACTCCTAGTATA 57.175 34.615 20.12 1.61 36.22 1.47
2744 3071 4.681483 GCTCTCACTAAAATTGGCAAACAC 59.319 41.667 3.01 0.00 0.00 3.32
2834 3291 1.638133 CTGAGACATGCCTCTTCGTG 58.362 55.000 10.57 0.00 34.38 4.35
3066 3607 4.292186 ACTATCAGTGAGGCAAACACAT 57.708 40.909 0.00 1.75 40.25 3.21
3076 3617 2.166821 GCAAACACATCATTGCCCAA 57.833 45.000 0.00 0.00 44.72 4.12
3123 3664 4.469657 AGAACCTAACATTGCAGGTGAAA 58.530 39.130 10.45 0.00 44.55 2.69
3189 3730 0.607489 GACACTGGCACTGGCTGATT 60.607 55.000 15.27 2.62 40.87 2.57
3218 3759 1.347707 TGTGGGCGAGAAACAGAGAAT 59.652 47.619 0.00 0.00 0.00 2.40
3369 3913 1.734388 GAAGCGTGTTTGGGCCACTT 61.734 55.000 5.23 4.87 0.00 3.16
3446 3990 7.546250 TCAGAATACTATCCAAGAAGATCCC 57.454 40.000 0.00 0.00 0.00 3.85
3535 4085 6.258068 CAGGAAATAGCTCGGGTACTAAAAAG 59.742 42.308 0.00 0.00 0.00 2.27
3667 4217 4.386652 CAGTATTGCCAAACATTGTTCAGC 59.613 41.667 13.87 13.87 0.00 4.26
3677 4227 3.554934 ACATTGTTCAGCAGAGGACAAA 58.445 40.909 1.14 0.00 35.83 2.83
3767 4317 7.817910 TTAGAACTACTATCCCCTTTTTCCA 57.182 36.000 0.00 0.00 0.00 3.53
3769 4319 6.663734 AGAACTACTATCCCCTTTTTCCATG 58.336 40.000 0.00 0.00 0.00 3.66
3850 4400 8.450578 TTTTTCTCAGACTGCAATTTAGAAGA 57.549 30.769 0.00 0.00 0.00 2.87
3879 4432 7.645058 AGGTGACATCTTCTTTGAAGAAAAA 57.355 32.000 13.05 0.44 43.84 1.94
3927 4480 7.582352 TGTACGTACATAATGTGAGATCTAGC 58.418 38.462 24.10 0.00 0.00 3.42
3987 4540 9.300681 ACCTGTTCAATTTCTAATGAATCAAGA 57.699 29.630 0.00 0.00 37.82 3.02
4008 4561 7.850935 AAGATATCCTCTTGTTCCGGTATAA 57.149 36.000 0.00 0.00 42.76 0.98
4009 4562 7.850935 AGATATCCTCTTGTTCCGGTATAAA 57.149 36.000 0.00 0.00 0.00 1.40
4010 4563 8.437274 AGATATCCTCTTGTTCCGGTATAAAT 57.563 34.615 0.00 0.00 0.00 1.40
4011 4564 9.543231 AGATATCCTCTTGTTCCGGTATAAATA 57.457 33.333 0.00 0.00 0.00 1.40
4012 4565 9.804758 GATATCCTCTTGTTCCGGTATAAATAG 57.195 37.037 0.00 0.00 0.00 1.73
4013 4566 7.613551 ATCCTCTTGTTCCGGTATAAATAGT 57.386 36.000 0.00 0.00 0.00 2.12
4014 4567 8.716674 ATCCTCTTGTTCCGGTATAAATAGTA 57.283 34.615 0.00 0.00 0.00 1.82
4015 4568 8.174733 TCCTCTTGTTCCGGTATAAATAGTAG 57.825 38.462 0.00 0.00 0.00 2.57
4016 4569 6.867293 CCTCTTGTTCCGGTATAAATAGTAGC 59.133 42.308 0.00 0.00 0.00 3.58
4017 4570 7.255871 CCTCTTGTTCCGGTATAAATAGTAGCT 60.256 40.741 0.00 0.00 0.00 3.32
4018 4571 8.696043 TCTTGTTCCGGTATAAATAGTAGCTA 57.304 34.615 0.00 0.00 0.00 3.32
4019 4572 9.305555 TCTTGTTCCGGTATAAATAGTAGCTAT 57.694 33.333 0.00 0.00 0.00 2.97
4020 4573 9.570488 CTTGTTCCGGTATAAATAGTAGCTATC 57.430 37.037 0.00 0.00 0.00 2.08
4021 4574 8.874744 TGTTCCGGTATAAATAGTAGCTATCT 57.125 34.615 0.00 0.00 0.00 1.98
4022 4575 8.737175 TGTTCCGGTATAAATAGTAGCTATCTG 58.263 37.037 0.00 0.00 0.00 2.90
4023 4576 7.330900 TCCGGTATAAATAGTAGCTATCTGC 57.669 40.000 0.00 0.00 43.29 4.26
4034 4587 2.237393 GCTATCTGCTCTTCCACTGG 57.763 55.000 0.00 0.00 38.95 4.00
4035 4588 1.202627 GCTATCTGCTCTTCCACTGGG 60.203 57.143 0.00 0.00 38.95 4.45
4036 4589 2.392662 CTATCTGCTCTTCCACTGGGA 58.607 52.381 0.00 0.00 43.03 4.37
4037 4590 1.202330 ATCTGCTCTTCCACTGGGAG 58.798 55.000 0.00 0.00 46.01 4.30
4038 4591 0.115152 TCTGCTCTTCCACTGGGAGA 59.885 55.000 5.88 5.88 46.01 3.71
4039 4592 0.536260 CTGCTCTTCCACTGGGAGAG 59.464 60.000 24.80 24.80 46.01 3.20
4040 4593 0.906756 TGCTCTTCCACTGGGAGAGG 60.907 60.000 28.40 14.39 46.01 3.69
4041 4594 0.616111 GCTCTTCCACTGGGAGAGGA 60.616 60.000 28.40 0.65 46.01 3.71
4042 4595 1.969240 GCTCTTCCACTGGGAGAGGAT 60.969 57.143 28.40 0.00 46.01 3.24
4043 4596 2.476199 CTCTTCCACTGGGAGAGGATT 58.524 52.381 22.24 0.00 46.01 3.01
4044 4597 2.843113 CTCTTCCACTGGGAGAGGATTT 59.157 50.000 22.24 0.00 46.01 2.17
4045 4598 2.573462 TCTTCCACTGGGAGAGGATTTG 59.427 50.000 1.29 0.00 46.01 2.32
4046 4599 0.620556 TCCACTGGGAGAGGATTTGC 59.379 55.000 0.00 0.00 38.64 3.68
4047 4600 0.394899 CCACTGGGAGAGGATTTGCC 60.395 60.000 0.00 0.00 35.59 4.52
4048 4601 2.807096 CCACTGGGAGAGGATTTGCCT 61.807 57.143 0.00 0.00 44.11 4.75
4049 4602 4.913475 CCACTGGGAGAGGATTTGCCTG 62.913 59.091 0.00 0.00 42.09 4.85
4081 4634 0.534412 AGATCTGGACCGTCTTGCTG 59.466 55.000 0.00 0.00 0.00 4.41
4088 4641 1.128692 GGACCGTCTTGCTGAATTTCG 59.871 52.381 0.00 0.00 0.00 3.46
4120 4673 2.523168 TGGGCTCGTGTGACTGGA 60.523 61.111 0.00 0.00 0.00 3.86
4127 4680 2.421739 GTGTGACTGGACAGCGGT 59.578 61.111 0.00 0.00 0.00 5.68
4132 4685 1.367840 GACTGGACAGCGGTCTTGT 59.632 57.895 16.66 14.48 43.77 3.16
4143 4696 1.725641 CGGTCTTGTATGCTGCAAGA 58.274 50.000 6.36 1.42 46.78 3.02
4153 4706 3.396767 CTGCAAGAGGAGCCTCCA 58.603 61.111 14.46 3.70 43.70 3.86
4158 4711 1.419387 GCAAGAGGAGCCTCCATACAT 59.581 52.381 14.46 0.00 43.70 2.29
4181 4734 1.077787 CATGTTAGGGCCTCCGCAA 60.078 57.895 10.74 0.00 38.33 4.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 0.391661 TGGGAGCAGCGATTTCTGAC 60.392 55.000 0.00 0.00 36.19 3.51
23 24 0.904865 ACAGAGCACGAGGAATGGGA 60.905 55.000 0.00 0.00 0.00 4.37
25 26 1.081892 CAACAGAGCACGAGGAATGG 58.918 55.000 0.00 0.00 0.00 3.16
28 29 0.468226 AACCAACAGAGCACGAGGAA 59.532 50.000 0.00 0.00 0.00 3.36
29 30 0.033504 GAACCAACAGAGCACGAGGA 59.966 55.000 0.00 0.00 0.00 3.71
40 41 2.433491 CGGCGGATCGAACCAACA 60.433 61.111 12.66 0.00 0.00 3.33
41 42 3.861263 GCGGCGGATCGAACCAAC 61.861 66.667 12.66 2.90 0.00 3.77
89 90 3.726517 CGCGCCAAGTCCCAACTG 61.727 66.667 0.00 0.00 35.36 3.16
90 91 3.469863 TTCGCGCCAAGTCCCAACT 62.470 57.895 0.00 0.00 37.32 3.16
97 98 3.916392 CTCCGTCTTCGCGCCAAGT 62.916 63.158 14.53 0.00 35.54 3.16
105 106 3.764466 AGGCAGGCTCCGTCTTCG 61.764 66.667 0.00 0.00 0.00 3.79
106 107 2.125350 CAGGCAGGCTCCGTCTTC 60.125 66.667 0.00 0.00 0.00 2.87
107 108 3.710722 CCAGGCAGGCTCCGTCTT 61.711 66.667 0.00 0.00 0.00 3.01
128 141 4.753662 CTCCCCGTCCGACTCCCA 62.754 72.222 0.00 0.00 0.00 4.37
193 206 4.899239 GACGCAGCCAGGATCCCG 62.899 72.222 8.55 6.19 0.00 5.14
194 207 4.899239 CGACGCAGCCAGGATCCC 62.899 72.222 8.55 0.00 0.00 3.85
217 230 3.192922 CCGGAATCGAACCACCGC 61.193 66.667 0.00 0.00 43.37 5.68
300 313 0.107848 CCAAAATCTACGGCCGAGGT 60.108 55.000 35.90 18.46 0.00 3.85
303 316 4.211986 GCCAAAATCTACGGCCGA 57.788 55.556 35.90 14.96 40.07 5.54
310 323 2.091541 CTTCGCCCAAGCCAAAATCTA 58.908 47.619 0.00 0.00 34.57 1.98
327 340 3.701604 ATCAGCGACGTCGGCCTTC 62.702 63.158 36.13 20.60 40.23 3.46
331 344 2.789203 GAACATCAGCGACGTCGGC 61.789 63.158 36.13 27.39 40.23 5.54
335 348 2.148916 TCTTTGAACATCAGCGACGT 57.851 45.000 0.00 0.00 0.00 4.34
341 354 7.199541 ACTTGTCTGAATCTTTGAACATCAG 57.800 36.000 0.00 0.00 39.04 2.90
344 357 5.180117 CGGACTTGTCTGAATCTTTGAACAT 59.820 40.000 3.65 0.00 0.00 2.71
355 368 2.693591 AGTCTGAACGGACTTGTCTGAA 59.306 45.455 15.59 1.56 43.14 3.02
356 369 2.034685 CAGTCTGAACGGACTTGTCTGA 59.965 50.000 15.59 0.00 43.14 3.27
368 381 0.615331 TGCAGGGGATCAGTCTGAAC 59.385 55.000 6.64 3.87 0.00 3.18
369 382 0.615331 GTGCAGGGGATCAGTCTGAA 59.385 55.000 6.64 0.76 0.00 3.02
374 387 3.402681 CCGGTGCAGGGGATCAGT 61.403 66.667 0.00 0.00 0.00 3.41
376 389 3.716195 CACCGGTGCAGGGGATCA 61.716 66.667 24.02 0.00 36.61 2.92
379 392 3.636231 CTTCACCGGTGCAGGGGA 61.636 66.667 30.25 8.69 43.02 4.81
389 403 2.202440 ATCGCGTCGTCTTCACCG 60.202 61.111 5.77 0.00 0.00 4.94
411 425 4.095932 TCATGTACCTGATGTAGTGACGAC 59.904 45.833 0.00 0.00 0.00 4.34
414 428 5.986135 GGATTCATGTACCTGATGTAGTGAC 59.014 44.000 1.42 0.00 29.63 3.67
420 434 5.618236 CTGATGGATTCATGTACCTGATGT 58.382 41.667 1.42 0.00 32.72 3.06
422 436 4.350225 AGCTGATGGATTCATGTACCTGAT 59.650 41.667 1.42 0.00 32.72 2.90
438 452 2.174363 TCACACTTGACCAGCTGATG 57.826 50.000 17.39 1.02 0.00 3.07
439 453 2.498167 GTTCACACTTGACCAGCTGAT 58.502 47.619 17.39 0.00 0.00 2.90
440 454 1.806247 CGTTCACACTTGACCAGCTGA 60.806 52.381 17.39 0.00 0.00 4.26
441 455 0.583438 CGTTCACACTTGACCAGCTG 59.417 55.000 6.78 6.78 0.00 4.24
442 456 0.178068 ACGTTCACACTTGACCAGCT 59.822 50.000 0.00 0.00 0.00 4.24
443 457 0.582005 GACGTTCACACTTGACCAGC 59.418 55.000 0.00 0.00 0.00 4.85
444 458 1.217882 GGACGTTCACACTTGACCAG 58.782 55.000 0.00 0.00 0.00 4.00
447 461 2.284417 GTCTTGGACGTTCACACTTGAC 59.716 50.000 0.00 0.00 0.00 3.18
448 462 2.546778 GTCTTGGACGTTCACACTTGA 58.453 47.619 0.00 0.00 0.00 3.02
460 474 2.022129 CCACAGCGTCGTCTTGGAC 61.022 63.158 0.00 0.00 0.00 4.02
461 475 2.338620 CCACAGCGTCGTCTTGGA 59.661 61.111 0.00 0.00 0.00 3.53
462 476 3.414700 GCCACAGCGTCGTCTTGG 61.415 66.667 0.00 0.00 0.00 3.61
463 477 2.661537 TGCCACAGCGTCGTCTTG 60.662 61.111 0.00 0.00 44.31 3.02
464 478 2.661866 GTGCCACAGCGTCGTCTT 60.662 61.111 0.00 0.00 44.31 3.01
466 480 3.106407 GAGTGCCACAGCGTCGTC 61.106 66.667 0.00 0.00 44.31 4.20
467 481 3.911698 TGAGTGCCACAGCGTCGT 61.912 61.111 0.00 0.00 44.31 4.34
468 482 3.406361 GTGAGTGCCACAGCGTCG 61.406 66.667 0.00 0.00 45.03 5.12
475 489 0.390860 AGTGAGTGAGTGAGTGCCAC 59.609 55.000 0.00 0.00 46.03 5.01
477 491 0.965439 AGAGTGAGTGAGTGAGTGCC 59.035 55.000 0.00 0.00 0.00 5.01
478 492 2.295909 AGAAGAGTGAGTGAGTGAGTGC 59.704 50.000 0.00 0.00 0.00 4.40
486 501 3.132824 TGAACAGCAAGAAGAGTGAGTGA 59.867 43.478 0.00 0.00 0.00 3.41
495 510 8.675504 AGATTATTTCAGATGAACAGCAAGAAG 58.324 33.333 0.00 0.00 33.13 2.85
520 535 5.980116 CGGTGAGAAATTGATACTACCTGAG 59.020 44.000 0.00 0.00 0.00 3.35
521 536 5.655090 TCGGTGAGAAATTGATACTACCTGA 59.345 40.000 0.00 0.00 0.00 3.86
528 543 3.187700 AGCGTCGGTGAGAAATTGATAC 58.812 45.455 0.00 0.00 0.00 2.24
529 544 3.119280 TGAGCGTCGGTGAGAAATTGATA 60.119 43.478 0.00 0.00 0.00 2.15
530 545 2.271800 GAGCGTCGGTGAGAAATTGAT 58.728 47.619 0.00 0.00 0.00 2.57
543 558 0.027455 TGCAAAAACAGTGAGCGTCG 59.973 50.000 0.00 0.00 0.00 5.12
545 560 0.248621 GCTGCAAAAACAGTGAGCGT 60.249 50.000 0.00 0.00 39.96 5.07
546 561 0.248580 TGCTGCAAAAACAGTGAGCG 60.249 50.000 0.00 0.00 39.96 5.03
578 619 4.452114 CCGACATTGTTTCAGATGAACAGA 59.548 41.667 0.00 0.00 33.13 3.41
593 634 6.205464 AGAGTAATAATTGATGCCCGACATTG 59.795 38.462 0.00 0.00 39.84 2.82
594 635 6.205464 CAGAGTAATAATTGATGCCCGACATT 59.795 38.462 0.00 0.00 39.84 2.71
614 655 0.473755 TGACATGGTTGGTGCAGAGT 59.526 50.000 0.00 0.00 0.00 3.24
619 660 1.539827 GTTACCTGACATGGTTGGTGC 59.460 52.381 13.64 5.47 41.22 5.01
622 663 2.813754 CAGTGTTACCTGACATGGTTGG 59.186 50.000 0.00 0.00 41.22 3.77
626 667 2.183478 TGCAGTGTTACCTGACATGG 57.817 50.000 0.00 0.00 34.23 3.66
631 672 4.002982 GACATTGATGCAGTGTTACCTGA 58.997 43.478 0.00 0.00 34.57 3.86
633 674 3.002791 CGACATTGATGCAGTGTTACCT 58.997 45.455 0.00 0.00 34.57 3.08
634 675 2.476185 GCGACATTGATGCAGTGTTACC 60.476 50.000 0.00 0.00 34.57 2.85
635 676 2.416547 AGCGACATTGATGCAGTGTTAC 59.583 45.455 0.00 0.00 34.57 2.50
637 678 1.198408 CAGCGACATTGATGCAGTGTT 59.802 47.619 0.00 0.00 34.57 3.32
638 679 0.800631 CAGCGACATTGATGCAGTGT 59.199 50.000 0.00 0.00 37.03 3.55
639 680 1.081094 TCAGCGACATTGATGCAGTG 58.919 50.000 0.00 0.00 0.00 3.66
641 682 2.384899 CATCAGCGACATTGATGCAG 57.615 50.000 0.00 0.76 43.66 4.41
645 686 8.613060 AGTAATAATTCATCAGCGACATTGAT 57.387 30.769 0.00 0.00 35.73 2.57
646 687 7.928167 AGAGTAATAATTCATCAGCGACATTGA 59.072 33.333 0.00 0.00 0.00 2.57
647 688 8.081208 AGAGTAATAATTCATCAGCGACATTG 57.919 34.615 0.00 0.00 0.00 2.82
648 689 7.386299 GGAGAGTAATAATTCATCAGCGACATT 59.614 37.037 0.00 0.00 0.00 2.71
649 690 6.870965 GGAGAGTAATAATTCATCAGCGACAT 59.129 38.462 0.00 0.00 0.00 3.06
650 691 6.183360 TGGAGAGTAATAATTCATCAGCGACA 60.183 38.462 0.00 0.00 0.00 4.35
652 693 6.405278 TGGAGAGTAATAATTCATCAGCGA 57.595 37.500 0.00 0.00 0.00 4.93
653 694 6.870439 TGATGGAGAGTAATAATTCATCAGCG 59.130 38.462 0.00 0.00 35.90 5.18
654 695 8.502387 GTTGATGGAGAGTAATAATTCATCAGC 58.498 37.037 0.00 0.00 39.99 4.26
656 697 8.493607 TGGTTGATGGAGAGTAATAATTCATCA 58.506 33.333 0.00 0.00 38.07 3.07
657 698 8.908786 TGGTTGATGGAGAGTAATAATTCATC 57.091 34.615 0.00 0.00 0.00 2.92
659 700 8.274322 ACATGGTTGATGGAGAGTAATAATTCA 58.726 33.333 0.00 0.00 36.23 2.57
660 701 8.682936 ACATGGTTGATGGAGAGTAATAATTC 57.317 34.615 0.00 0.00 36.23 2.17
661 702 8.274322 TGACATGGTTGATGGAGAGTAATAATT 58.726 33.333 0.00 0.00 36.23 1.40
662 703 7.805163 TGACATGGTTGATGGAGAGTAATAAT 58.195 34.615 0.00 0.00 36.23 1.28
663 704 7.194112 TGACATGGTTGATGGAGAGTAATAA 57.806 36.000 0.00 0.00 36.23 1.40
664 705 6.183361 CCTGACATGGTTGATGGAGAGTAATA 60.183 42.308 0.00 0.00 36.23 0.98
665 706 5.397221 CCTGACATGGTTGATGGAGAGTAAT 60.397 44.000 0.00 0.00 36.23 1.89
666 707 4.080919 CCTGACATGGTTGATGGAGAGTAA 60.081 45.833 0.00 0.00 36.23 2.24
667 708 3.452264 CCTGACATGGTTGATGGAGAGTA 59.548 47.826 0.00 0.00 36.23 2.59
668 709 2.238144 CCTGACATGGTTGATGGAGAGT 59.762 50.000 0.00 0.00 36.23 3.24
669 710 2.238144 ACCTGACATGGTTGATGGAGAG 59.762 50.000 0.00 0.00 36.89 3.20
670 711 2.269023 ACCTGACATGGTTGATGGAGA 58.731 47.619 0.00 0.00 36.89 3.71
671 712 2.795231 ACCTGACATGGTTGATGGAG 57.205 50.000 0.00 0.00 36.89 3.86
672 713 2.092968 GCTACCTGACATGGTTGATGGA 60.093 50.000 0.00 0.00 41.22 3.41
673 714 2.292267 GCTACCTGACATGGTTGATGG 58.708 52.381 0.00 0.00 41.22 3.51
674 715 2.989909 TGCTACCTGACATGGTTGATG 58.010 47.619 0.00 0.00 41.22 3.07
675 716 3.939740 ATGCTACCTGACATGGTTGAT 57.060 42.857 0.00 0.00 41.22 2.57
676 717 3.346315 CAATGCTACCTGACATGGTTGA 58.654 45.455 0.00 0.00 41.22 3.18
677 718 2.159338 GCAATGCTACCTGACATGGTTG 60.159 50.000 0.00 2.61 41.22 3.77
678 719 2.094675 GCAATGCTACCTGACATGGTT 58.905 47.619 0.00 0.00 41.22 3.67
679 720 1.004628 TGCAATGCTACCTGACATGGT 59.995 47.619 6.82 0.00 43.66 3.55
680 721 1.753930 TGCAATGCTACCTGACATGG 58.246 50.000 6.82 0.00 0.00 3.66
681 722 2.946990 TGATGCAATGCTACCTGACATG 59.053 45.455 6.82 0.00 0.00 3.21
682 723 3.286329 TGATGCAATGCTACCTGACAT 57.714 42.857 6.82 0.00 0.00 3.06
683 724 2.785540 TGATGCAATGCTACCTGACA 57.214 45.000 6.82 0.00 0.00 3.58
684 725 3.961182 CATTGATGCAATGCTACCTGAC 58.039 45.455 6.82 0.00 43.38 3.51
694 735 1.338973 GATGGGCGACATTGATGCAAT 59.661 47.619 0.00 0.00 40.72 3.56
695 736 0.740149 GATGGGCGACATTGATGCAA 59.260 50.000 0.00 0.00 40.72 4.08
696 737 0.394080 TGATGGGCGACATTGATGCA 60.394 50.000 0.00 0.00 40.72 3.96
697 738 0.740149 TTGATGGGCGACATTGATGC 59.260 50.000 0.00 0.00 40.72 3.91
698 739 3.720949 AATTGATGGGCGACATTGATG 57.279 42.857 0.00 0.00 40.72 3.07
699 740 6.716628 AGTAATAATTGATGGGCGACATTGAT 59.283 34.615 0.00 0.00 40.72 2.57
700 741 6.061441 AGTAATAATTGATGGGCGACATTGA 58.939 36.000 0.00 0.00 40.72 2.57
701 742 6.205464 AGAGTAATAATTGATGGGCGACATTG 59.795 38.462 0.00 0.00 40.72 2.82
702 743 6.205464 CAGAGTAATAATTGATGGGCGACATT 59.795 38.462 0.00 0.00 40.72 2.71
703 744 5.702670 CAGAGTAATAATTGATGGGCGACAT 59.297 40.000 0.00 0.00 44.18 3.06
704 745 5.056480 CAGAGTAATAATTGATGGGCGACA 58.944 41.667 0.00 0.00 0.00 4.35
705 746 4.083802 GCAGAGTAATAATTGATGGGCGAC 60.084 45.833 0.00 0.00 0.00 5.19
706 747 4.065088 GCAGAGTAATAATTGATGGGCGA 58.935 43.478 0.00 0.00 0.00 5.54
707 748 3.814842 TGCAGAGTAATAATTGATGGGCG 59.185 43.478 0.00 0.00 0.00 6.13
708 749 5.772825 TTGCAGAGTAATAATTGATGGGC 57.227 39.130 0.00 0.00 0.00 5.36
709 750 8.394971 TGTATTGCAGAGTAATAATTGATGGG 57.605 34.615 0.00 0.00 0.00 4.00
726 767 1.202639 CCGGCCATAGACTGTATTGCA 60.203 52.381 2.24 0.00 0.00 4.08
727 768 1.512926 CCGGCCATAGACTGTATTGC 58.487 55.000 2.24 0.00 0.00 3.56
728 769 1.416401 ACCCGGCCATAGACTGTATTG 59.584 52.381 2.24 0.00 0.00 1.90
730 771 1.339097 GACCCGGCCATAGACTGTAT 58.661 55.000 2.24 0.00 0.00 2.29
731 772 0.032912 TGACCCGGCCATAGACTGTA 60.033 55.000 2.24 0.00 0.00 2.74
732 773 1.305802 TGACCCGGCCATAGACTGT 60.306 57.895 2.24 0.00 0.00 3.55
734 775 0.617820 AAGTGACCCGGCCATAGACT 60.618 55.000 2.24 0.00 0.00 3.24
735 776 1.117150 TAAGTGACCCGGCCATAGAC 58.883 55.000 2.24 0.00 0.00 2.59
736 777 2.097110 ATAAGTGACCCGGCCATAGA 57.903 50.000 2.24 0.00 0.00 1.98
737 778 2.930826 AATAAGTGACCCGGCCATAG 57.069 50.000 2.24 0.00 0.00 2.23
738 779 3.039743 TGTAATAAGTGACCCGGCCATA 58.960 45.455 2.24 0.00 0.00 2.74
739 780 1.841277 TGTAATAAGTGACCCGGCCAT 59.159 47.619 2.24 0.00 0.00 4.40
740 781 1.065998 GTGTAATAAGTGACCCGGCCA 60.066 52.381 2.24 0.00 0.00 5.36
741 782 1.208776 AGTGTAATAAGTGACCCGGCC 59.791 52.381 0.00 0.00 0.00 6.13
742 783 2.547826 GAGTGTAATAAGTGACCCGGC 58.452 52.381 0.00 0.00 0.00 6.13
743 784 2.498481 TGGAGTGTAATAAGTGACCCGG 59.502 50.000 0.00 0.00 0.00 5.73
744 785 3.880047 TGGAGTGTAATAAGTGACCCG 57.120 47.619 0.00 0.00 0.00 5.28
745 786 5.353394 TGATGGAGTGTAATAAGTGACCC 57.647 43.478 0.00 0.00 0.00 4.46
746 787 7.047891 TGATTGATGGAGTGTAATAAGTGACC 58.952 38.462 0.00 0.00 0.00 4.02
747 788 7.254590 GCTGATTGATGGAGTGTAATAAGTGAC 60.255 40.741 0.00 0.00 0.00 3.67
748 789 6.763135 GCTGATTGATGGAGTGTAATAAGTGA 59.237 38.462 0.00 0.00 0.00 3.41
749 790 6.539826 TGCTGATTGATGGAGTGTAATAAGTG 59.460 38.462 0.00 0.00 0.00 3.16
750 791 6.653020 TGCTGATTGATGGAGTGTAATAAGT 58.347 36.000 0.00 0.00 0.00 2.24
751 792 6.293298 GCTGCTGATTGATGGAGTGTAATAAG 60.293 42.308 0.00 0.00 0.00 1.73
752 793 5.528690 GCTGCTGATTGATGGAGTGTAATAA 59.471 40.000 0.00 0.00 0.00 1.40
753 794 5.059161 GCTGCTGATTGATGGAGTGTAATA 58.941 41.667 0.00 0.00 0.00 0.98
754 795 3.881688 GCTGCTGATTGATGGAGTGTAAT 59.118 43.478 0.00 0.00 0.00 1.89
755 796 3.054875 AGCTGCTGATTGATGGAGTGTAA 60.055 43.478 0.00 0.00 0.00 2.41
756 797 2.502947 AGCTGCTGATTGATGGAGTGTA 59.497 45.455 0.00 0.00 0.00 2.90
757 798 1.281287 AGCTGCTGATTGATGGAGTGT 59.719 47.619 0.00 0.00 0.00 3.55
758 799 1.671328 CAGCTGCTGATTGATGGAGTG 59.329 52.381 24.88 0.00 32.44 3.51
792 834 4.106925 GCTGCAGGGAGGAGGTGG 62.107 72.222 17.12 0.00 35.99 4.61
807 849 3.603330 AATGGGGAGGGGGTCAGCT 62.603 63.158 0.00 0.00 0.00 4.24
809 851 0.324645 CAAAATGGGGAGGGGGTCAG 60.325 60.000 0.00 0.00 0.00 3.51
810 852 1.780327 CAAAATGGGGAGGGGGTCA 59.220 57.895 0.00 0.00 0.00 4.02
813 859 1.381735 GAGCAAAATGGGGAGGGGG 60.382 63.158 0.00 0.00 0.00 5.40
846 892 1.452108 GGAGCGCCAATGGTAGCTT 60.452 57.895 21.10 8.90 38.44 3.74
863 909 0.795085 CTCGCTGCTTCAGAAGTTGG 59.205 55.000 11.94 3.88 32.44 3.77
989 1039 1.421485 GACTGCATCAAGAACGCCG 59.579 57.895 0.00 0.00 0.00 6.46
995 1045 3.385193 TCAAGAACGACTGCATCAAGA 57.615 42.857 0.00 0.00 0.00 3.02
996 1046 3.681417 TCATCAAGAACGACTGCATCAAG 59.319 43.478 0.00 0.00 0.00 3.02
997 1047 3.433274 GTCATCAAGAACGACTGCATCAA 59.567 43.478 0.00 0.00 0.00 2.57
1084 1169 1.623811 GCTGTCCTCCACTTTGTAGGA 59.376 52.381 0.00 0.00 37.07 2.94
1124 1209 4.191544 CAAATATGGCTTCTTCTCGGACA 58.808 43.478 0.00 0.00 0.00 4.02
1125 1210 3.561725 CCAAATATGGCTTCTTCTCGGAC 59.438 47.826 0.00 0.00 40.58 4.79
1134 1219 1.484038 TGCACCCCAAATATGGCTTC 58.516 50.000 0.00 0.00 46.09 3.86
1179 1264 3.706373 ACCTCCTTGGCGATGCGT 61.706 61.111 0.00 0.00 40.22 5.24
1319 1404 3.254411 TGCTTCGTTGATGCCAAACATTA 59.746 39.130 2.74 0.00 39.84 1.90
1628 1869 3.438434 GCTCTGGAGAAATTCTTGTGGAC 59.562 47.826 0.00 0.00 0.00 4.02
1673 1914 5.007724 GGCTTTCCAACGTAATCATAGGAAG 59.992 44.000 0.00 0.00 36.59 3.46
1705 1946 0.823460 ACAGCCCCAACACTTGTTTG 59.177 50.000 0.00 0.00 35.83 2.93
1897 2145 1.784115 CGCAATTTCAATTTGCTGCGC 60.784 47.619 13.64 0.00 32.85 6.09
1906 2154 1.794116 GCACAAGCACGCAATTTCAAT 59.206 42.857 0.00 0.00 41.58 2.57
2132 2392 2.031245 GTCATCGTTGTCAACCATTGCA 60.031 45.455 10.12 0.00 0.00 4.08
2166 2432 3.165875 TCAGTTTCTCCTCCACAGTAGG 58.834 50.000 0.00 0.00 35.26 3.18
2366 2672 0.763986 ATGCACCAGGTTGCCCTTTT 60.764 50.000 10.46 0.00 42.25 2.27
2367 2673 1.152269 ATGCACCAGGTTGCCCTTT 60.152 52.632 10.46 0.00 42.25 3.11
2368 2674 1.909781 CATGCACCAGGTTGCCCTT 60.910 57.895 10.46 0.00 42.25 3.95
2369 2675 1.788518 TACATGCACCAGGTTGCCCT 61.789 55.000 10.46 0.00 42.25 5.19
2372 2678 0.962356 AGCTACATGCACCAGGTTGC 60.962 55.000 8.03 8.03 44.17 4.17
2373 2679 1.089920 GAGCTACATGCACCAGGTTG 58.910 55.000 0.00 0.00 45.94 3.77
2399 2705 4.785453 CTTCCCTGGACCCTGCGC 62.785 72.222 0.00 0.00 0.00 6.09
2400 2706 4.101448 CCTTCCCTGGACCCTGCG 62.101 72.222 0.00 0.00 0.00 5.18
2401 2707 3.732849 CCCTTCCCTGGACCCTGC 61.733 72.222 0.00 0.00 0.00 4.85
2402 2708 2.204151 ACCCTTCCCTGGACCCTG 60.204 66.667 0.00 0.00 0.00 4.45
2403 2709 2.125225 GACCCTTCCCTGGACCCT 59.875 66.667 0.00 0.00 0.00 4.34
2404 2710 3.015753 GGACCCTTCCCTGGACCC 61.016 72.222 0.00 0.00 35.57 4.46
2405 2711 3.400054 CGGACCCTTCCCTGGACC 61.400 72.222 0.00 0.00 38.99 4.46
2406 2712 2.284405 TCGGACCCTTCCCTGGAC 60.284 66.667 0.00 0.00 38.99 4.02
2407 2713 2.284405 GTCGGACCCTTCCCTGGA 60.284 66.667 0.00 0.00 38.99 3.86
2408 2714 3.400054 GGTCGGACCCTTCCCTGG 61.400 72.222 16.55 0.00 38.99 4.45
2409 2715 2.606519 TGGTCGGACCCTTCCCTG 60.607 66.667 23.81 0.00 38.99 4.45
2410 2716 2.606826 GTGGTCGGACCCTTCCCT 60.607 66.667 23.81 0.00 38.99 4.20
2411 2717 1.775934 AAAGTGGTCGGACCCTTCCC 61.776 60.000 23.81 7.17 38.99 3.97
2412 2718 0.605589 CAAAGTGGTCGGACCCTTCC 60.606 60.000 23.81 9.51 37.50 3.46
2413 2719 0.605589 CCAAAGTGGTCGGACCCTTC 60.606 60.000 23.81 13.97 37.50 3.46
2414 2720 1.454539 CCAAAGTGGTCGGACCCTT 59.545 57.895 23.81 21.08 37.50 3.95
2415 2721 2.526046 CCCAAAGTGGTCGGACCCT 61.526 63.158 23.81 16.82 37.50 4.34
2416 2722 2.033602 CCCAAAGTGGTCGGACCC 59.966 66.667 23.81 14.91 37.50 4.46
2417 2723 1.302271 GACCCAAAGTGGTCGGACC 60.302 63.158 20.36 20.36 44.98 4.46
2418 2724 4.373771 GACCCAAAGTGGTCGGAC 57.626 61.111 0.00 0.00 44.98 4.79
2423 2729 3.131755 GCGTACTATAGACCCAAAGTGGT 59.868 47.826 6.78 0.00 42.79 4.16
2424 2730 3.131577 TGCGTACTATAGACCCAAAGTGG 59.868 47.826 6.78 0.00 37.25 4.00
2425 2731 4.360563 CTGCGTACTATAGACCCAAAGTG 58.639 47.826 6.78 0.00 0.00 3.16
2426 2732 3.181478 GCTGCGTACTATAGACCCAAAGT 60.181 47.826 6.78 0.00 0.00 2.66
2427 2733 3.381949 GCTGCGTACTATAGACCCAAAG 58.618 50.000 6.78 0.00 0.00 2.77
2428 2734 2.101917 GGCTGCGTACTATAGACCCAAA 59.898 50.000 6.78 0.00 0.00 3.28
2429 2735 1.684983 GGCTGCGTACTATAGACCCAA 59.315 52.381 6.78 0.00 0.00 4.12
2430 2736 1.133575 AGGCTGCGTACTATAGACCCA 60.134 52.381 6.78 0.00 0.00 4.51
2431 2737 1.618487 AGGCTGCGTACTATAGACCC 58.382 55.000 6.78 0.00 0.00 4.46
2432 2738 3.552478 GGAAAGGCTGCGTACTATAGACC 60.552 52.174 6.78 0.00 0.00 3.85
2433 2739 3.552478 GGGAAAGGCTGCGTACTATAGAC 60.552 52.174 6.78 0.00 0.00 2.59
2434 2740 2.626743 GGGAAAGGCTGCGTACTATAGA 59.373 50.000 6.78 0.00 0.00 1.98
2435 2741 2.628657 AGGGAAAGGCTGCGTACTATAG 59.371 50.000 0.00 0.00 0.00 1.31
2436 2742 2.674420 AGGGAAAGGCTGCGTACTATA 58.326 47.619 0.00 0.00 0.00 1.31
2437 2743 1.497161 AGGGAAAGGCTGCGTACTAT 58.503 50.000 0.00 0.00 0.00 2.12
2438 2744 1.753073 GTAGGGAAAGGCTGCGTACTA 59.247 52.381 0.00 0.00 34.81 1.82
2439 2745 0.535797 GTAGGGAAAGGCTGCGTACT 59.464 55.000 0.00 0.00 34.81 2.73
2440 2746 0.248289 TGTAGGGAAAGGCTGCGTAC 59.752 55.000 0.00 0.00 37.28 3.67
2441 2747 1.200519 ATGTAGGGAAAGGCTGCGTA 58.799 50.000 0.00 0.00 0.00 4.42
2442 2748 0.328258 AATGTAGGGAAAGGCTGCGT 59.672 50.000 0.00 0.00 0.00 5.24
2443 2749 1.401905 GAAATGTAGGGAAAGGCTGCG 59.598 52.381 0.00 0.00 0.00 5.18
2444 2750 2.424956 CAGAAATGTAGGGAAAGGCTGC 59.575 50.000 0.00 0.00 0.00 5.25
2445 2751 3.690460 ACAGAAATGTAGGGAAAGGCTG 58.310 45.455 0.00 0.00 0.00 4.85
2446 2752 5.250774 TCTTACAGAAATGTAGGGAAAGGCT 59.749 40.000 0.00 0.00 0.00 4.58
2447 2753 5.497474 TCTTACAGAAATGTAGGGAAAGGC 58.503 41.667 0.00 0.00 0.00 4.35
2448 2754 6.116126 CCTCTTACAGAAATGTAGGGAAAGG 58.884 44.000 0.00 0.00 0.00 3.11
2449 2755 5.586643 GCCTCTTACAGAAATGTAGGGAAAG 59.413 44.000 0.00 0.00 0.00 2.62
2450 2756 5.250774 AGCCTCTTACAGAAATGTAGGGAAA 59.749 40.000 0.00 0.00 0.00 3.13
2451 2757 4.783227 AGCCTCTTACAGAAATGTAGGGAA 59.217 41.667 0.00 0.00 0.00 3.97
2452 2758 4.162320 CAGCCTCTTACAGAAATGTAGGGA 59.838 45.833 0.00 0.00 0.00 4.20
2453 2759 4.080863 ACAGCCTCTTACAGAAATGTAGGG 60.081 45.833 0.00 0.66 0.00 3.53
2454 2760 5.091261 ACAGCCTCTTACAGAAATGTAGG 57.909 43.478 0.00 0.00 0.00 3.18
2455 2761 6.092807 GGAAACAGCCTCTTACAGAAATGTAG 59.907 42.308 0.00 0.00 0.00 2.74
2456 2762 5.938125 GGAAACAGCCTCTTACAGAAATGTA 59.062 40.000 0.00 0.00 0.00 2.29
2457 2763 4.762251 GGAAACAGCCTCTTACAGAAATGT 59.238 41.667 0.00 0.00 0.00 2.71
2458 2764 4.761739 TGGAAACAGCCTCTTACAGAAATG 59.238 41.667 0.00 0.00 35.01 2.32
2459 2765 4.985538 TGGAAACAGCCTCTTACAGAAAT 58.014 39.130 0.00 0.00 35.01 2.17
2460 2766 4.431416 TGGAAACAGCCTCTTACAGAAA 57.569 40.909 0.00 0.00 35.01 2.52
2474 2780 1.566703 TGGGTTCAAGTCCTGGAAACA 59.433 47.619 0.00 0.00 32.36 2.83
2475 2781 2.358322 TGGGTTCAAGTCCTGGAAAC 57.642 50.000 0.00 0.00 0.00 2.78
2476 2782 2.445145 TCATGGGTTCAAGTCCTGGAAA 59.555 45.455 0.00 0.00 0.00 3.13
2477 2783 2.061848 TCATGGGTTCAAGTCCTGGAA 58.938 47.619 0.00 0.00 0.00 3.53
2478 2784 1.351017 GTCATGGGTTCAAGTCCTGGA 59.649 52.381 0.00 0.00 0.00 3.86
2479 2785 1.614317 GGTCATGGGTTCAAGTCCTGG 60.614 57.143 0.00 0.00 0.00 4.45
2480 2786 1.352352 AGGTCATGGGTTCAAGTCCTG 59.648 52.381 0.00 0.00 0.00 3.86
2481 2787 1.630878 GAGGTCATGGGTTCAAGTCCT 59.369 52.381 0.00 0.00 0.00 3.85
2482 2788 1.351017 TGAGGTCATGGGTTCAAGTCC 59.649 52.381 0.00 0.00 0.00 3.85
2483 2789 2.859165 TGAGGTCATGGGTTCAAGTC 57.141 50.000 0.00 0.00 0.00 3.01
2498 2804 1.310933 GCTGCCTTGTGACCATGAGG 61.311 60.000 0.00 0.00 42.21 3.86
2499 2805 0.607217 TGCTGCCTTGTGACCATGAG 60.607 55.000 0.00 0.00 0.00 2.90
2500 2806 0.607217 CTGCTGCCTTGTGACCATGA 60.607 55.000 0.00 0.00 0.00 3.07
2501 2807 1.880894 CTGCTGCCTTGTGACCATG 59.119 57.895 0.00 0.00 0.00 3.66
2502 2808 1.975407 GCTGCTGCCTTGTGACCAT 60.975 57.895 3.85 0.00 0.00 3.55
2503 2809 2.595463 GCTGCTGCCTTGTGACCA 60.595 61.111 3.85 0.00 0.00 4.02
2504 2810 1.458639 AAAGCTGCTGCCTTGTGACC 61.459 55.000 12.44 0.00 40.80 4.02
2505 2811 1.068954 GTAAAGCTGCTGCCTTGTGAC 60.069 52.381 12.44 0.00 40.80 3.67
2506 2812 1.238439 GTAAAGCTGCTGCCTTGTGA 58.762 50.000 12.44 0.00 40.80 3.58
2507 2813 0.242017 GGTAAAGCTGCTGCCTTGTG 59.758 55.000 12.44 0.00 40.80 3.33
2508 2814 0.178992 TGGTAAAGCTGCTGCCTTGT 60.179 50.000 12.44 0.00 40.80 3.16
2509 2815 0.242017 GTGGTAAAGCTGCTGCCTTG 59.758 55.000 12.44 0.00 40.80 3.61
2510 2816 0.111253 AGTGGTAAAGCTGCTGCCTT 59.889 50.000 12.44 8.34 40.80 4.35
2511 2817 0.607489 CAGTGGTAAAGCTGCTGCCT 60.607 55.000 12.44 2.45 40.80 4.75
2512 2818 1.878775 CAGTGGTAAAGCTGCTGCC 59.121 57.895 12.44 7.07 40.80 4.85
2517 2823 1.514678 TTGGCGCAGTGGTAAAGCTG 61.515 55.000 10.83 0.00 35.93 4.24
2518 2824 1.228124 TTGGCGCAGTGGTAAAGCT 60.228 52.632 10.83 0.00 0.00 3.74
2519 2825 1.210155 CTTGGCGCAGTGGTAAAGC 59.790 57.895 10.83 0.00 0.00 3.51
2520 2826 1.875963 CCTTGGCGCAGTGGTAAAG 59.124 57.895 10.83 0.71 0.00 1.85
2521 2827 2.265182 GCCTTGGCGCAGTGGTAAA 61.265 57.895 10.83 0.00 0.00 2.01
2522 2828 2.671619 GCCTTGGCGCAGTGGTAA 60.672 61.111 10.83 0.00 0.00 2.85
2523 2829 3.605749 GAGCCTTGGCGCAGTGGTA 62.606 63.158 10.83 0.00 0.00 3.25
2531 2837 4.033776 TGAAGGGGAGCCTTGGCG 62.034 66.667 5.95 0.00 0.00 5.69
2532 2838 2.361737 GTGAAGGGGAGCCTTGGC 60.362 66.667 2.97 2.97 0.00 4.52
2533 2839 2.045926 CGTGAAGGGGAGCCTTGG 60.046 66.667 0.00 0.00 0.00 3.61
2534 2840 0.955919 GTTCGTGAAGGGGAGCCTTG 60.956 60.000 0.00 0.00 0.00 3.61
2535 2841 1.375326 GTTCGTGAAGGGGAGCCTT 59.625 57.895 0.00 0.00 0.00 4.35
2536 2842 1.415672 TTGTTCGTGAAGGGGAGCCT 61.416 55.000 0.00 0.00 0.00 4.58
2537 2843 0.955919 CTTGTTCGTGAAGGGGAGCC 60.956 60.000 0.00 0.00 0.00 4.70
2538 2844 1.578206 GCTTGTTCGTGAAGGGGAGC 61.578 60.000 0.00 0.00 0.00 4.70
2539 2845 0.955919 GGCTTGTTCGTGAAGGGGAG 60.956 60.000 0.00 0.00 0.00 4.30
2540 2846 1.072505 GGCTTGTTCGTGAAGGGGA 59.927 57.895 0.00 0.00 0.00 4.81
2541 2847 0.821711 TTGGCTTGTTCGTGAAGGGG 60.822 55.000 0.00 0.00 0.00 4.79
2542 2848 1.247567 ATTGGCTTGTTCGTGAAGGG 58.752 50.000 0.00 0.00 0.00 3.95
2543 2849 5.811399 TTATATTGGCTTGTTCGTGAAGG 57.189 39.130 0.00 0.00 0.00 3.46
2544 2850 7.072177 TCTTTATATTGGCTTGTTCGTGAAG 57.928 36.000 0.00 0.00 0.00 3.02
2545 2851 7.441890 TTCTTTATATTGGCTTGTTCGTGAA 57.558 32.000 0.00 0.00 0.00 3.18
2546 2852 7.441890 TTTCTTTATATTGGCTTGTTCGTGA 57.558 32.000 0.00 0.00 0.00 4.35
2547 2853 8.687824 ATTTTCTTTATATTGGCTTGTTCGTG 57.312 30.769 0.00 0.00 0.00 4.35
2548 2854 9.705290 AAATTTTCTTTATATTGGCTTGTTCGT 57.295 25.926 0.00 0.00 0.00 3.85
2599 2905 4.278975 AGGAGTCATGTCTCAGTTTTCC 57.721 45.455 19.45 3.66 36.30 3.13
2615 2921 7.676683 TCTTTCAATTGGCTATACTAGGAGT 57.323 36.000 5.42 0.00 0.00 3.85
2690 3015 9.420118 TGGCCAACAAATAATCTAACTTCATAT 57.580 29.630 0.61 0.00 0.00 1.78
2691 3016 8.815565 TGGCCAACAAATAATCTAACTTCATA 57.184 30.769 0.61 0.00 0.00 2.15
2692 3017 7.716799 TGGCCAACAAATAATCTAACTTCAT 57.283 32.000 0.61 0.00 0.00 2.57
2693 3018 7.716799 ATGGCCAACAAATAATCTAACTTCA 57.283 32.000 10.96 0.00 0.00 3.02
2704 3031 4.199310 GAGAGCACTATGGCCAACAAATA 58.801 43.478 10.96 0.00 0.00 1.40
2744 3071 5.699915 CAGGATTAGCTCATTCATACACAGG 59.300 44.000 0.00 0.00 0.00 4.00
2987 3525 3.932822 TGATGCTCGCTTAACCTAAACA 58.067 40.909 0.00 0.00 0.00 2.83
3049 3590 2.636647 TGATGTGTTTGCCTCACTGA 57.363 45.000 0.00 0.00 36.83 3.41
3066 3607 4.013050 TGTATTTCATCGTTGGGCAATGA 58.987 39.130 0.00 0.00 40.25 2.57
3076 3617 4.141914 GGTCTTCCTCCTGTATTTCATCGT 60.142 45.833 0.00 0.00 0.00 3.73
3123 3664 8.682710 TCTAGCAGTTGAGTTACAAATTTTGTT 58.317 29.630 19.15 2.49 42.22 2.83
3189 3730 0.901827 TCTCGCCCACAGAGCAATTA 59.098 50.000 0.00 0.00 35.79 1.40
3358 3902 1.112315 ACGCAATGAAGTGGCCCAAA 61.112 50.000 0.00 0.00 0.00 3.28
3369 3913 2.487762 CTGGCTTAAAAGGACGCAATGA 59.512 45.455 0.00 0.00 0.00 2.57
3446 3990 2.620112 CCCAGTTGTTGCTCCAGCG 61.620 63.158 0.00 0.00 45.83 5.18
3510 4060 4.931661 TTAGTACCCGAGCTATTTCCTG 57.068 45.455 0.00 0.00 0.00 3.86
3516 4066 5.945144 TTCCTTTTTAGTACCCGAGCTAT 57.055 39.130 0.00 0.00 0.00 2.97
3535 4085 2.430694 AGAACAACAAGGCACCTTTTCC 59.569 45.455 0.00 0.00 33.42 3.13
3667 4217 3.815809 TGGTACCTGTTTTTGTCCTCTG 58.184 45.455 14.36 0.00 0.00 3.35
3745 4295 6.217693 ACATGGAAAAAGGGGATAGTAGTTCT 59.782 38.462 0.00 0.00 0.00 3.01
3747 4297 6.011981 TGACATGGAAAAAGGGGATAGTAGTT 60.012 38.462 0.00 0.00 0.00 2.24
3749 4299 6.001449 TGACATGGAAAAAGGGGATAGTAG 57.999 41.667 0.00 0.00 0.00 2.57
3750 4300 6.590656 ATGACATGGAAAAAGGGGATAGTA 57.409 37.500 0.00 0.00 0.00 1.82
3751 4301 4.946160 TGACATGGAAAAAGGGGATAGT 57.054 40.909 0.00 0.00 0.00 2.12
3752 4302 7.831193 CCTATATGACATGGAAAAAGGGGATAG 59.169 40.741 0.00 0.00 0.00 2.08
3753 4303 7.297108 ACCTATATGACATGGAAAAAGGGGATA 59.703 37.037 0.00 0.00 0.00 2.59
3754 4304 6.104691 ACCTATATGACATGGAAAAAGGGGAT 59.895 38.462 0.00 0.00 0.00 3.85
3755 4305 5.435041 ACCTATATGACATGGAAAAAGGGGA 59.565 40.000 0.00 0.00 0.00 4.81
3767 4317 7.886629 ATGTGAAGCAAAACCTATATGACAT 57.113 32.000 0.00 0.00 0.00 3.06
3769 4319 8.243426 TGAAATGTGAAGCAAAACCTATATGAC 58.757 33.333 0.00 0.00 0.00 3.06
3827 4377 8.627208 ATTCTTCTAAATTGCAGTCTGAGAAA 57.373 30.769 3.32 0.00 0.00 2.52
3828 4378 9.725019 TTATTCTTCTAAATTGCAGTCTGAGAA 57.275 29.630 3.32 1.83 0.00 2.87
3834 4384 8.730680 TCACCTTTATTCTTCTAAATTGCAGTC 58.269 33.333 0.00 0.00 0.00 3.51
3835 4385 8.515414 GTCACCTTTATTCTTCTAAATTGCAGT 58.485 33.333 0.00 0.00 0.00 4.40
3850 4400 8.924511 TCTTCAAAGAAGATGTCACCTTTATT 57.075 30.769 5.41 0.00 30.73 1.40
3881 4434 9.227490 CGTACAAGATTATTAGAGTTCAGACAG 57.773 37.037 0.00 0.00 0.00 3.51
3885 4438 9.999009 TGTACGTACAAGATTATTAGAGTTCAG 57.001 33.333 25.54 0.00 32.40 3.02
3909 4462 8.743085 ACATTTTGCTAGATCTCACATTATGT 57.257 30.769 0.00 8.60 0.00 2.29
3916 4469 4.333926 GGTGGACATTTTGCTAGATCTCAC 59.666 45.833 0.00 0.00 0.00 3.51
3918 4471 4.517285 TGGTGGACATTTTGCTAGATCTC 58.483 43.478 0.00 0.00 0.00 2.75
3961 4514 9.300681 TCTTGATTCATTAGAAATTGAACAGGT 57.699 29.630 0.00 0.00 37.29 4.00
3985 4538 7.850935 TTTATACCGGAACAAGAGGATATCT 57.149 36.000 9.46 0.00 41.27 1.98
3986 4539 9.804758 CTATTTATACCGGAACAAGAGGATATC 57.195 37.037 9.46 0.00 0.00 1.63
3987 4540 9.322769 ACTATTTATACCGGAACAAGAGGATAT 57.677 33.333 9.46 0.00 0.00 1.63
3988 4541 8.716674 ACTATTTATACCGGAACAAGAGGATA 57.283 34.615 9.46 0.00 0.00 2.59
3989 4542 7.613551 ACTATTTATACCGGAACAAGAGGAT 57.386 36.000 9.46 0.00 0.00 3.24
3990 4543 7.255730 GCTACTATTTATACCGGAACAAGAGGA 60.256 40.741 9.46 0.00 0.00 3.71
3991 4544 6.867293 GCTACTATTTATACCGGAACAAGAGG 59.133 42.308 9.46 0.00 0.00 3.69
3992 4545 7.659186 AGCTACTATTTATACCGGAACAAGAG 58.341 38.462 9.46 4.49 0.00 2.85
3993 4546 7.592885 AGCTACTATTTATACCGGAACAAGA 57.407 36.000 9.46 0.00 0.00 3.02
3994 4547 9.570488 GATAGCTACTATTTATACCGGAACAAG 57.430 37.037 9.46 0.00 0.00 3.16
3995 4548 9.305555 AGATAGCTACTATTTATACCGGAACAA 57.694 33.333 9.46 0.00 0.00 2.83
3996 4549 8.737175 CAGATAGCTACTATTTATACCGGAACA 58.263 37.037 9.46 0.00 0.00 3.18
3997 4550 7.701501 GCAGATAGCTACTATTTATACCGGAAC 59.298 40.741 9.46 0.00 41.15 3.62
3998 4551 7.769220 GCAGATAGCTACTATTTATACCGGAA 58.231 38.462 9.46 0.00 41.15 4.30
3999 4552 7.330900 GCAGATAGCTACTATTTATACCGGA 57.669 40.000 9.46 0.00 41.15 5.14
4013 4566 6.477008 TCCCAGTGGAAGAGCAGATAGCTA 62.477 50.000 11.95 0.00 46.75 3.32
4015 4568 1.202627 CCCAGTGGAAGAGCAGATAGC 60.203 57.143 11.95 0.00 46.19 2.97
4016 4569 2.364970 CTCCCAGTGGAAGAGCAGATAG 59.635 54.545 11.95 0.00 41.17 2.08
4017 4570 2.023984 TCTCCCAGTGGAAGAGCAGATA 60.024 50.000 11.95 0.00 41.17 1.98
4018 4571 1.202330 CTCCCAGTGGAAGAGCAGAT 58.798 55.000 11.95 0.00 41.17 2.90
4019 4572 0.115152 TCTCCCAGTGGAAGAGCAGA 59.885 55.000 11.95 0.00 41.17 4.26
4020 4573 0.536260 CTCTCCCAGTGGAAGAGCAG 59.464 60.000 13.08 6.52 41.17 4.24
4021 4574 0.906756 CCTCTCCCAGTGGAAGAGCA 60.907 60.000 19.70 4.21 41.17 4.26
4022 4575 0.616111 TCCTCTCCCAGTGGAAGAGC 60.616 60.000 19.70 0.00 41.17 4.09
4023 4576 2.173126 ATCCTCTCCCAGTGGAAGAG 57.827 55.000 18.27 18.27 40.79 2.85
4024 4577 2.573462 CAAATCCTCTCCCAGTGGAAGA 59.427 50.000 11.95 3.67 40.79 2.87
4025 4578 2.943199 GCAAATCCTCTCCCAGTGGAAG 60.943 54.545 11.95 0.00 40.79 3.46
4026 4579 1.004745 GCAAATCCTCTCCCAGTGGAA 59.995 52.381 11.95 0.00 40.79 3.53
4027 4580 0.620556 GCAAATCCTCTCCCAGTGGA 59.379 55.000 11.95 0.00 41.55 4.02
4028 4581 0.394899 GGCAAATCCTCTCCCAGTGG 60.395 60.000 0.63 0.63 0.00 4.00
4029 4582 0.622665 AGGCAAATCCTCTCCCAGTG 59.377 55.000 0.00 0.00 43.20 3.66
4030 4583 0.622665 CAGGCAAATCCTCTCCCAGT 59.377 55.000 0.00 0.00 45.52 4.00
4031 4584 0.106819 CCAGGCAAATCCTCTCCCAG 60.107 60.000 0.00 0.00 45.52 4.45
4032 4585 1.574526 CCCAGGCAAATCCTCTCCCA 61.575 60.000 0.00 0.00 45.52 4.37
4033 4586 1.228510 CCCAGGCAAATCCTCTCCC 59.771 63.158 0.00 0.00 45.52 4.30
4034 4587 0.849417 ATCCCAGGCAAATCCTCTCC 59.151 55.000 0.00 0.00 45.52 3.71
4035 4588 2.305009 CAATCCCAGGCAAATCCTCTC 58.695 52.381 0.00 0.00 45.52 3.20
4036 4589 1.642762 ACAATCCCAGGCAAATCCTCT 59.357 47.619 0.00 0.00 45.52 3.69
4037 4590 2.149973 ACAATCCCAGGCAAATCCTC 57.850 50.000 0.00 0.00 45.52 3.71
4039 4592 7.175104 TCTAATATACAATCCCAGGCAAATCC 58.825 38.462 0.00 0.00 0.00 3.01
4040 4593 8.814038 ATCTAATATACAATCCCAGGCAAATC 57.186 34.615 0.00 0.00 0.00 2.17
4041 4594 8.618385 AGATCTAATATACAATCCCAGGCAAAT 58.382 33.333 0.00 0.00 0.00 2.32
4042 4595 7.884877 CAGATCTAATATACAATCCCAGGCAAA 59.115 37.037 0.00 0.00 0.00 3.68
4043 4596 7.397221 CAGATCTAATATACAATCCCAGGCAA 58.603 38.462 0.00 0.00 0.00 4.52
4044 4597 6.070021 CCAGATCTAATATACAATCCCAGGCA 60.070 42.308 0.00 0.00 0.00 4.75
4045 4598 6.156949 TCCAGATCTAATATACAATCCCAGGC 59.843 42.308 0.00 0.00 0.00 4.85
4046 4599 7.365117 GGTCCAGATCTAATATACAATCCCAGG 60.365 44.444 0.00 0.00 0.00 4.45
4047 4600 7.560368 GGTCCAGATCTAATATACAATCCCAG 58.440 42.308 0.00 0.00 0.00 4.45
4048 4601 6.154534 CGGTCCAGATCTAATATACAATCCCA 59.845 42.308 0.00 0.00 0.00 4.37
4049 4602 6.154706 ACGGTCCAGATCTAATATACAATCCC 59.845 42.308 0.00 0.00 0.00 3.85
4050 4603 7.122948 AGACGGTCCAGATCTAATATACAATCC 59.877 40.741 4.14 0.00 0.00 3.01
4051 4604 8.057536 AGACGGTCCAGATCTAATATACAATC 57.942 38.462 4.14 0.00 0.00 2.67
4052 4605 8.307483 CAAGACGGTCCAGATCTAATATACAAT 58.693 37.037 4.14 0.00 0.00 2.71
4053 4606 7.658261 CAAGACGGTCCAGATCTAATATACAA 58.342 38.462 4.14 0.00 0.00 2.41
4054 4607 6.294564 GCAAGACGGTCCAGATCTAATATACA 60.295 42.308 4.14 0.00 0.00 2.29
4055 4608 6.071840 AGCAAGACGGTCCAGATCTAATATAC 60.072 42.308 4.14 0.00 0.00 1.47
4056 4609 6.010850 AGCAAGACGGTCCAGATCTAATATA 58.989 40.000 4.14 0.00 0.00 0.86
4057 4610 4.835615 AGCAAGACGGTCCAGATCTAATAT 59.164 41.667 4.14 0.00 0.00 1.28
4058 4611 4.038042 CAGCAAGACGGTCCAGATCTAATA 59.962 45.833 4.14 0.00 0.00 0.98
4059 4612 3.034635 AGCAAGACGGTCCAGATCTAAT 58.965 45.455 4.14 0.00 0.00 1.73
4060 4613 2.166459 CAGCAAGACGGTCCAGATCTAA 59.834 50.000 4.14 0.00 0.00 2.10
4061 4614 1.751351 CAGCAAGACGGTCCAGATCTA 59.249 52.381 4.14 0.00 0.00 1.98
4120 4673 3.143675 CAGCATACAAGACCGCTGT 57.856 52.632 0.00 0.00 45.34 4.40
4132 4685 0.467384 GAGGCTCCTCTTGCAGCATA 59.533 55.000 2.15 0.00 39.80 3.14
4138 4691 0.833287 TGTATGGAGGCTCCTCTTGC 59.167 55.000 32.28 20.31 42.38 4.01
4143 4696 1.750930 CGCATGTATGGAGGCTCCT 59.249 57.895 32.28 20.32 37.46 3.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.