Multiple sequence alignment - TraesCS6B01G035000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G035000 chr6B 100.000 3794 0 0 1 3794 20880683 20876890 0.000000e+00 7007
1 TraesCS6B01G035000 chr6B 90.982 2118 174 12 1331 3440 20835558 20833450 0.000000e+00 2837
2 TraesCS6B01G035000 chr6B 92.815 1865 123 7 1328 3190 20700356 20698501 0.000000e+00 2691
3 TraesCS6B01G035000 chr6B 90.356 2053 174 18 1333 3377 20961652 20959616 0.000000e+00 2673
4 TraesCS6B01G035000 chr6B 90.502 2032 175 10 1331 3349 20932102 20930076 0.000000e+00 2667
5 TraesCS6B01G035000 chr6B 96.643 566 17 2 236 800 20701487 20700923 0.000000e+00 939
6 TraesCS6B01G035000 chr6B 84.284 719 81 16 448 1138 20933024 20932310 0.000000e+00 673
7 TraesCS6B01G035000 chr6B 79.454 915 128 34 464 1338 20962571 20961677 9.070000e-166 593
8 TraesCS6B01G035000 chr6B 86.874 419 42 7 448 864 20836469 20836062 1.240000e-124 457
9 TraesCS6B01G035000 chr6B 88.321 274 32 0 1 274 20701760 20701487 2.830000e-86 329
10 TraesCS6B01G035000 chr6B 87.251 251 32 0 868 1118 20700824 20700574 1.720000e-73 287
11 TraesCS6B01G035000 chr6B 92.857 112 7 1 352 463 20836597 20836487 1.090000e-35 161
12 TraesCS6B01G035000 chr6B 81.944 144 23 3 36 177 91130169 91130311 6.660000e-23 119
13 TraesCS6B01G035000 chr6D 91.525 2053 158 10 1331 3377 11070759 11068717 0.000000e+00 2813
14 TraesCS6B01G035000 chr6D 85.187 2545 296 42 859 3349 20761087 20758570 0.000000e+00 2536
15 TraesCS6B01G035000 chr6D 83.880 701 67 20 590 1259 11071553 11070868 8.950000e-176 627
16 TraesCS6B01G035000 chr6D 85.466 461 52 7 352 800 20761631 20761174 2.060000e-127 466
17 TraesCS6B01G035000 chr3A 78.873 1633 301 31 1477 3096 21006624 21008225 0.000000e+00 1064
18 TraesCS6B01G035000 chr3A 91.967 361 23 4 3436 3794 616974426 616974070 5.660000e-138 501
19 TraesCS6B01G035000 chr3A 83.019 159 23 4 20 176 20743365 20743521 1.420000e-29 141
20 TraesCS6B01G035000 chr3B 78.676 1632 301 34 1477 3094 22426186 22424588 0.000000e+00 1042
21 TraesCS6B01G035000 chr1D 77.474 950 198 15 1841 2782 439928676 439927735 4.280000e-154 555
22 TraesCS6B01G035000 chr2D 93.333 360 23 1 3436 3794 626092037 626091678 7.220000e-147 531
23 TraesCS6B01G035000 chr2D 91.944 360 25 2 3436 3794 525748459 525748103 5.660000e-138 501
24 TraesCS6B01G035000 chr2D 92.394 355 20 6 3436 3788 129020664 129021013 2.030000e-137 499
25 TraesCS6B01G035000 chr7B 93.220 354 23 1 3436 3788 487211349 487211702 1.560000e-143 520
26 TraesCS6B01G035000 chr7B 92.373 354 26 1 3436 3788 66596640 66596993 1.570000e-138 503
27 TraesCS6B01G035000 chr7B 77.368 813 158 17 1484 2279 666506855 666506052 3.450000e-125 459
28 TraesCS6B01G035000 chr7B 83.889 180 24 5 1 177 745256187 745256010 2.340000e-37 167
29 TraesCS6B01G035000 chr7B 81.319 182 28 6 1 178 521118830 521119009 3.950000e-30 143
30 TraesCS6B01G035000 chr7B 78.824 170 28 7 12 177 611029339 611029174 1.440000e-19 108
31 TraesCS6B01G035000 chr7B 78.107 169 29 7 13 177 610842170 610842006 2.410000e-17 100
32 TraesCS6B01G035000 chr3D 92.222 360 24 2 3436 3794 58551574 58551218 1.220000e-139 507
33 TraesCS6B01G035000 chr4A 92.222 360 23 3 3436 3794 709511309 709510954 4.370000e-139 505
34 TraesCS6B01G035000 chr5B 91.667 360 29 1 3436 3794 162522816 162522457 7.320000e-137 497
35 TraesCS6B01G035000 chr4D 83.673 147 21 3 36 179 123100691 123100545 6.610000e-28 135
36 TraesCS6B01G035000 chr5A 79.444 180 34 3 1 177 72225438 72225259 1.430000e-24 124


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G035000 chr6B 20876890 20880683 3793 True 7007.000000 7007 100.000000 1 3794 1 chr6B.!!$R1 3793
1 TraesCS6B01G035000 chr6B 20930076 20933024 2948 True 1670.000000 2667 87.393000 448 3349 2 chr6B.!!$R4 2901
2 TraesCS6B01G035000 chr6B 20959616 20962571 2955 True 1633.000000 2673 84.905000 464 3377 2 chr6B.!!$R5 2913
3 TraesCS6B01G035000 chr6B 20833450 20836597 3147 True 1151.666667 2837 90.237667 352 3440 3 chr6B.!!$R3 3088
4 TraesCS6B01G035000 chr6B 20698501 20701760 3259 True 1061.500000 2691 91.257500 1 3190 4 chr6B.!!$R2 3189
5 TraesCS6B01G035000 chr6D 11068717 11071553 2836 True 1720.000000 2813 87.702500 590 3377 2 chr6D.!!$R1 2787
6 TraesCS6B01G035000 chr6D 20758570 20761631 3061 True 1501.000000 2536 85.326500 352 3349 2 chr6D.!!$R2 2997
7 TraesCS6B01G035000 chr3A 21006624 21008225 1601 False 1064.000000 1064 78.873000 1477 3096 1 chr3A.!!$F2 1619
8 TraesCS6B01G035000 chr3B 22424588 22426186 1598 True 1042.000000 1042 78.676000 1477 3094 1 chr3B.!!$R1 1617
9 TraesCS6B01G035000 chr1D 439927735 439928676 941 True 555.000000 555 77.474000 1841 2782 1 chr1D.!!$R1 941
10 TraesCS6B01G035000 chr7B 666506052 666506855 803 True 459.000000 459 77.368000 1484 2279 1 chr7B.!!$R3 795

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
33 34 0.033011 TGAGGACCCCAGTAGCTCTC 60.033 60.0 0.0 0.0 0.00 3.20 F
233 234 0.108138 GCGGCACCATCTCTGTAGTT 60.108 55.0 0.0 0.0 0.00 2.24 F
1134 1291 0.325484 ACTGCATCTCTCTGCCTCCT 60.325 55.0 0.0 0.0 41.58 3.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1645 1858 0.107081 TGGAGTTGGTTGTACCGTGG 59.893 55.0 0.0 0.0 42.58 4.94 R
1648 1862 2.178912 ATGTGGAGTTGGTTGTACCG 57.821 50.0 0.0 0.0 42.58 4.02 R
2973 3200 0.317160 TGCGAAGAACACGATGGACT 59.683 50.0 0.0 0.0 0.00 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 0.033011 TGAGGACCCCAGTAGCTCTC 60.033 60.000 0.00 0.00 0.00 3.20
34 35 0.757561 GAGGACCCCAGTAGCTCTCC 60.758 65.000 0.00 0.00 0.00 3.71
36 37 0.556747 GGACCCCAGTAGCTCTCCTA 59.443 60.000 0.00 0.00 0.00 2.94
44 45 4.425180 CAGTAGCTCTCCTAGTGGTAGA 57.575 50.000 0.00 0.00 41.70 2.59
64 65 2.515757 TGGTGTTGCTGCGCTCAA 60.516 55.556 9.73 10.35 0.00 3.02
66 67 2.425773 GTGTTGCTGCGCTCAACG 60.426 61.111 27.71 8.57 44.88 4.10
86 87 1.961277 CGATGTATCCGCCTTGGGC 60.961 63.158 0.00 0.00 46.75 5.36
101 102 3.871574 GGCGTGTGCGTGTGTTGT 61.872 61.111 0.00 0.00 44.10 3.32
108 109 4.605967 GCGTGTGTTGTGGTGGCG 62.606 66.667 0.00 0.00 0.00 5.69
117 118 0.678366 TTGTGGTGGCGTGAGTTTGT 60.678 50.000 0.00 0.00 0.00 2.83
120 121 2.037381 TGTGGTGGCGTGAGTTTGTATA 59.963 45.455 0.00 0.00 0.00 1.47
128 129 4.039032 GCGTGAGTTTGTATAGAGCTCTC 58.961 47.826 22.17 6.75 0.00 3.20
207 208 1.135315 CAAGGCCATCCACATTGAACG 60.135 52.381 5.01 0.00 33.74 3.95
213 214 2.587956 CATCCACATTGAACGTGCTTG 58.412 47.619 0.00 0.00 32.85 4.01
214 215 0.950836 TCCACATTGAACGTGCTTGG 59.049 50.000 0.00 0.00 32.85 3.61
229 230 3.321648 TGGCGGCACCATCTCTGT 61.322 61.111 7.97 0.00 46.36 3.41
233 234 0.108138 GCGGCACCATCTCTGTAGTT 60.108 55.000 0.00 0.00 0.00 2.24
284 323 0.478072 TCCACCAGTCAAGCCACATT 59.522 50.000 0.00 0.00 0.00 2.71
318 357 1.639298 GCGCAAGGCTCGAAGACAAT 61.639 55.000 0.30 0.00 39.11 2.71
360 399 5.129368 AGCCAATGTTAGTTATCACCCAT 57.871 39.130 0.00 0.00 0.00 4.00
469 550 4.467082 TGGCATACGGTTCTTTCCTAGTAA 59.533 41.667 0.00 0.00 0.00 2.24
534 618 4.451096 AGTGTGTTGGTCGTGACATTAATC 59.549 41.667 2.00 0.00 0.00 1.75
629 718 7.986085 AATATTAAAATAGATGCGCTGACCT 57.014 32.000 9.73 2.72 0.00 3.85
791 880 4.127918 TCTTCTTTGTCTACCCTCCAGA 57.872 45.455 0.00 0.00 0.00 3.86
801 890 4.407296 GTCTACCCTCCAGATTCTTGACAT 59.593 45.833 0.00 0.00 0.00 3.06
804 893 3.588842 ACCCTCCAGATTCTTGACATGAA 59.411 43.478 0.00 6.26 0.00 2.57
809 898 6.358974 TCCAGATTCTTGACATGAACTACA 57.641 37.500 0.00 0.00 0.00 2.74
818 907 8.763049 TCTTGACATGAACTACAATACAGAAG 57.237 34.615 0.00 0.00 0.00 2.85
819 908 7.819415 TCTTGACATGAACTACAATACAGAAGG 59.181 37.037 0.00 0.00 0.00 3.46
820 909 6.406370 TGACATGAACTACAATACAGAAGGG 58.594 40.000 0.00 0.00 0.00 3.95
822 914 7.092891 TGACATGAACTACAATACAGAAGGGAT 60.093 37.037 0.00 0.00 0.00 3.85
877 997 2.029290 GCTGAAGAGTACCTTTCGGTGA 60.029 50.000 14.05 0.00 45.18 4.02
914 1034 1.889573 GCCTCTATGTTGCCTCCGC 60.890 63.158 0.00 0.00 0.00 5.54
964 1084 2.094752 GCCAATTTAACATGCCACGAGT 60.095 45.455 0.00 0.00 0.00 4.18
977 1097 2.735762 GCCACGAGTCACAGGAGAATAC 60.736 54.545 0.00 0.00 0.00 1.89
1026 1146 0.388659 GCACATGCTTGGGTGTCAAA 59.611 50.000 3.52 0.00 37.35 2.69
1042 1162 6.316390 GGGTGTCAAATCTGAACGAGAATATT 59.684 38.462 0.00 0.00 33.12 1.28
1043 1163 7.494625 GGGTGTCAAATCTGAACGAGAATATTA 59.505 37.037 0.00 0.00 33.12 0.98
1074 1194 2.024918 CACATGTATGGCCGGCTTC 58.975 57.895 28.56 11.61 0.00 3.86
1075 1195 0.747644 CACATGTATGGCCGGCTTCA 60.748 55.000 28.56 17.84 0.00 3.02
1134 1291 0.325484 ACTGCATCTCTCTGCCTCCT 60.325 55.000 0.00 0.00 41.58 3.69
1136 1293 1.047596 TGCATCTCTCTGCCTCCTCC 61.048 60.000 0.00 0.00 41.58 4.30
1140 1297 1.827789 CTCTCTGCCTCCTCCTCCG 60.828 68.421 0.00 0.00 0.00 4.63
1141 1298 2.043450 CTCTGCCTCCTCCTCCGT 60.043 66.667 0.00 0.00 0.00 4.69
1142 1299 1.684049 CTCTGCCTCCTCCTCCGTT 60.684 63.158 0.00 0.00 0.00 4.44
1143 1300 1.954362 CTCTGCCTCCTCCTCCGTTG 61.954 65.000 0.00 0.00 0.00 4.10
1145 1302 2.266055 GCCTCCTCCTCCGTTGTG 59.734 66.667 0.00 0.00 0.00 3.33
1146 1303 2.266055 CCTCCTCCTCCGTTGTGC 59.734 66.667 0.00 0.00 0.00 4.57
1147 1304 2.583441 CCTCCTCCTCCGTTGTGCA 61.583 63.158 0.00 0.00 0.00 4.57
1159 1317 2.151202 CGTTGTGCACACCTCCTAAAT 58.849 47.619 21.56 0.00 0.00 1.40
1160 1318 3.331150 CGTTGTGCACACCTCCTAAATA 58.669 45.455 21.56 0.00 0.00 1.40
1161 1319 3.124636 CGTTGTGCACACCTCCTAAATAC 59.875 47.826 21.56 9.96 0.00 1.89
1186 1344 9.874205 ACTACTAATATGCAAAACGTACCTTTA 57.126 29.630 0.00 0.00 0.00 1.85
1241 1401 4.389077 CACACCTTTTCGAGAAGTGATACC 59.611 45.833 14.01 0.00 34.12 2.73
1308 1489 5.011533 ACATGATCAAGCTCCACCTCTATAC 59.988 44.000 0.00 0.00 0.00 1.47
1309 1490 4.546674 TGATCAAGCTCCACCTCTATACA 58.453 43.478 0.00 0.00 0.00 2.29
1316 1497 6.412362 AGCTCCACCTCTATACATACTTTG 57.588 41.667 0.00 0.00 0.00 2.77
1376 1589 5.376625 TCTGATGTGCCCCTAATGATAAAC 58.623 41.667 0.00 0.00 0.00 2.01
1562 1775 6.942576 ACACTAAAGGAAGTCATTATTGCACT 59.057 34.615 0.00 0.00 0.00 4.40
1611 1824 0.385029 TGCAACCAAGATGTGCACAC 59.615 50.000 24.37 15.97 0.00 3.82
1645 1858 6.038997 ACAAAATCTGGTACTAGGTGAGTC 57.961 41.667 6.38 0.00 39.81 3.36
1648 1862 3.083122 TCTGGTACTAGGTGAGTCCAC 57.917 52.381 6.38 0.00 39.81 4.02
1660 1874 1.202557 TGAGTCCACGGTACAACCAAC 60.203 52.381 0.00 0.00 38.47 3.77
1702 1928 5.362556 AAAATTCTGAACAGTGATGACGG 57.637 39.130 0.00 0.00 0.00 4.79
1753 1979 5.105675 GGGATTAGCGTTGGTTTTGGAATTA 60.106 40.000 0.00 0.00 0.00 1.40
1820 2046 6.455360 AAAAGACATCAAGAAGAAACTGCA 57.545 33.333 0.00 0.00 0.00 4.41
1834 2060 6.990341 AGAAACTGCAAAGAAAGCATTTTT 57.010 29.167 5.25 1.12 42.46 1.94
1939 2165 7.346751 TCAGAGTTAGAAAAGGCAACAAATT 57.653 32.000 0.00 0.00 41.41 1.82
2141 2368 4.260948 GCTCTTTGGTTGTTGTCTTGAGAG 60.261 45.833 0.00 0.00 33.16 3.20
2260 2487 5.406767 TGATTGTTTGAAAATTGCTGCAC 57.593 34.783 0.00 0.00 0.00 4.57
2585 2812 1.751924 TGGGCTAACGCAAAACTTGTT 59.248 42.857 0.00 0.00 38.10 2.83
2765 2992 7.039011 ACAAGTGGAGATGAAACTACAGTATGA 60.039 37.037 0.00 0.00 39.69 2.15
2791 3018 6.037610 GCGATCTAAAAGGTTGAGATCATGTT 59.962 38.462 13.43 0.00 43.86 2.71
2802 3029 6.348540 GGTTGAGATCATGTTAGGTTGTTGTC 60.349 42.308 0.00 0.00 0.00 3.18
2848 3075 2.736670 AAGTGGACAAAGCCAAGACT 57.263 45.000 0.00 0.00 40.20 3.24
2858 3085 1.633774 AGCCAAGACTCTCTTCCGAA 58.366 50.000 0.00 0.00 33.78 4.30
2971 3198 2.409651 CGACTCTCCCACGCTAGC 59.590 66.667 4.06 4.06 0.00 3.42
2972 3199 2.115911 CGACTCTCCCACGCTAGCT 61.116 63.158 13.93 0.00 0.00 3.32
2973 3200 0.814410 CGACTCTCCCACGCTAGCTA 60.814 60.000 13.93 0.00 0.00 3.32
2974 3201 0.948678 GACTCTCCCACGCTAGCTAG 59.051 60.000 16.84 16.84 0.00 3.42
2989 3218 3.512033 AGCTAGTCCATCGTGTTCTTC 57.488 47.619 0.00 0.00 0.00 2.87
3031 3260 7.817962 TGTCTACTTTTCCTATTGAAGTGCTAC 59.182 37.037 0.00 0.00 35.43 3.58
3034 3263 9.167311 CTACTTTTCCTATTGAAGTGCTACATT 57.833 33.333 0.00 0.00 35.43 2.71
3035 3264 8.409358 ACTTTTCCTATTGAAGTGCTACATTT 57.591 30.769 0.00 0.00 33.63 2.32
3075 3304 7.823635 TGGAGAGGGTAAAGTATACTCTACAT 58.176 38.462 16.35 6.00 42.54 2.29
3221 3464 5.030295 CGCATTGTGAATTGTAACATCCTC 58.970 41.667 0.00 0.00 0.00 3.71
3265 3509 8.610896 CAATTAAAAAGCAAAGGATGTCACAAA 58.389 29.630 0.00 0.00 0.00 2.83
3285 3531 7.434897 TCACAAAGTGTTCAAATCAAGTAATGC 59.565 33.333 0.00 0.00 34.79 3.56
3349 3596 8.308931 CAATATATTAATGCAAAGCCACTCCAT 58.691 33.333 0.00 0.00 0.00 3.41
3350 3597 9.532494 AATATATTAATGCAAAGCCACTCCATA 57.468 29.630 0.00 0.00 0.00 2.74
3351 3598 7.838079 ATATTAATGCAAAGCCACTCCATAA 57.162 32.000 0.00 0.00 0.00 1.90
3359 3608 5.127031 GCAAAGCCACTCCATAAAATTAGGA 59.873 40.000 0.00 0.00 0.00 2.94
3382 3631 6.590677 GGATATCTTGTTATAGCTTTCGGACC 59.409 42.308 2.05 0.00 0.00 4.46
3394 3643 0.830648 TTCGGACCTCATCATGGGAC 59.169 55.000 0.00 0.00 0.00 4.46
3395 3644 1.048724 TCGGACCTCATCATGGGACC 61.049 60.000 0.00 0.00 34.86 4.46
3398 3647 1.141858 GGACCTCATCATGGGACCTTC 59.858 57.143 6.46 0.00 35.23 3.46
3408 3657 7.590907 TCATCATGGGACCTTCCATAAAATTA 58.409 34.615 0.00 0.00 45.08 1.40
3415 3664 8.002459 TGGGACCTTCCATAAAATTACCTTATC 58.998 37.037 0.00 0.00 38.64 1.75
3417 3666 9.416284 GGACCTTCCATAAAATTACCTTATCAA 57.584 33.333 0.00 0.00 36.28 2.57
3423 3672 8.278639 TCCATAAAATTACCTTATCAAGCTCCA 58.721 33.333 0.00 0.00 0.00 3.86
3445 3694 3.778954 AGGAACTCTTGTGGAAGAAGG 57.221 47.619 0.00 0.00 37.87 3.46
3446 3695 3.318313 AGGAACTCTTGTGGAAGAAGGA 58.682 45.455 0.00 0.00 37.87 3.36
3447 3696 3.326297 AGGAACTCTTGTGGAAGAAGGAG 59.674 47.826 0.00 0.00 37.87 3.69
3448 3697 3.325135 GGAACTCTTGTGGAAGAAGGAGA 59.675 47.826 0.00 0.00 37.87 3.71
3449 3698 4.311606 GAACTCTTGTGGAAGAAGGAGAC 58.688 47.826 0.00 0.00 37.87 3.36
3451 3700 3.323403 ACTCTTGTGGAAGAAGGAGACTG 59.677 47.826 0.00 0.00 42.68 3.51
3452 3701 3.309296 TCTTGTGGAAGAAGGAGACTGT 58.691 45.455 0.00 0.00 42.68 3.55
3453 3702 3.070159 TCTTGTGGAAGAAGGAGACTGTG 59.930 47.826 0.00 0.00 42.68 3.66
3454 3703 2.677914 TGTGGAAGAAGGAGACTGTGA 58.322 47.619 0.00 0.00 42.68 3.58
3455 3704 3.242867 TGTGGAAGAAGGAGACTGTGAT 58.757 45.455 0.00 0.00 42.68 3.06
3456 3705 3.007290 TGTGGAAGAAGGAGACTGTGATG 59.993 47.826 0.00 0.00 42.68 3.07
3457 3706 3.259374 GTGGAAGAAGGAGACTGTGATGA 59.741 47.826 0.00 0.00 42.68 2.92
3458 3707 3.259374 TGGAAGAAGGAGACTGTGATGAC 59.741 47.826 0.00 0.00 42.68 3.06
3459 3708 3.506810 GAAGAAGGAGACTGTGATGACG 58.493 50.000 0.00 0.00 42.68 4.35
3460 3709 1.821753 AGAAGGAGACTGTGATGACGG 59.178 52.381 0.00 0.00 42.68 4.79
3461 3710 0.247736 AAGGAGACTGTGATGACGGC 59.752 55.000 0.00 0.00 42.68 5.68
3462 3711 0.613292 AGGAGACTGTGATGACGGCT 60.613 55.000 0.00 0.00 41.13 5.52
3463 3712 0.179124 GGAGACTGTGATGACGGCTC 60.179 60.000 6.92 6.92 33.91 4.70
3464 3713 0.179124 GAGACTGTGATGACGGCTCC 60.179 60.000 0.00 0.00 30.99 4.70
3465 3714 1.517257 GACTGTGATGACGGCTCCG 60.517 63.158 6.79 6.79 46.03 4.63
3466 3715 1.934220 GACTGTGATGACGGCTCCGA 61.934 60.000 15.95 0.00 42.83 4.55
3467 3716 1.323271 ACTGTGATGACGGCTCCGAT 61.323 55.000 15.95 0.00 42.83 4.18
3468 3717 0.873312 CTGTGATGACGGCTCCGATG 60.873 60.000 15.95 0.00 42.83 3.84
3469 3718 1.319614 TGTGATGACGGCTCCGATGA 61.320 55.000 15.95 0.00 42.83 2.92
3470 3719 0.872021 GTGATGACGGCTCCGATGAC 60.872 60.000 15.95 0.00 42.83 3.06
3471 3720 1.300233 GATGACGGCTCCGATGACC 60.300 63.158 15.95 0.00 42.83 4.02
3476 3725 2.582498 GGCTCCGATGACCGAACG 60.582 66.667 0.00 0.00 41.76 3.95
3477 3726 2.582498 GCTCCGATGACCGAACGG 60.582 66.667 11.83 11.83 46.71 4.44
3481 3730 4.379221 CGATGACCGAACGGAGTC 57.621 61.111 20.14 8.42 45.00 3.36
3482 3731 1.582937 CGATGACCGAACGGAGTCG 60.583 63.158 20.14 18.75 45.00 4.18
3487 3736 2.412112 CCGAACGGAGTCGGGATC 59.588 66.667 14.58 0.00 45.00 3.36
3488 3737 2.412323 CCGAACGGAGTCGGGATCA 61.412 63.158 14.58 0.00 45.00 2.92
3489 3738 1.064296 CGAACGGAGTCGGGATCAG 59.936 63.158 2.48 0.00 45.00 2.90
3490 3739 1.227002 GAACGGAGTCGGGATCAGC 60.227 63.158 2.48 0.00 45.00 4.26
3491 3740 1.668101 GAACGGAGTCGGGATCAGCT 61.668 60.000 2.48 0.00 45.00 4.24
3492 3741 1.949847 AACGGAGTCGGGATCAGCTG 61.950 60.000 7.63 7.63 45.00 4.24
3493 3742 2.418910 CGGAGTCGGGATCAGCTGT 61.419 63.158 14.67 0.42 0.00 4.40
3494 3743 1.901085 GGAGTCGGGATCAGCTGTT 59.099 57.895 14.67 5.03 0.00 3.16
3495 3744 0.460987 GGAGTCGGGATCAGCTGTTG 60.461 60.000 14.67 0.46 0.00 3.33
3496 3745 1.078848 AGTCGGGATCAGCTGTTGC 60.079 57.895 14.67 10.88 40.05 4.17
3497 3746 2.125552 TCGGGATCAGCTGTTGCG 60.126 61.111 14.67 7.58 45.42 4.85
3498 3747 2.125552 CGGGATCAGCTGTTGCGA 60.126 61.111 14.67 0.00 45.42 5.10
3499 3748 1.741401 CGGGATCAGCTGTTGCGAA 60.741 57.895 14.67 0.00 45.42 4.70
3500 3749 1.699656 CGGGATCAGCTGTTGCGAAG 61.700 60.000 14.67 2.43 45.42 3.79
3501 3750 0.674895 GGGATCAGCTGTTGCGAAGT 60.675 55.000 14.67 0.00 45.42 3.01
3502 3751 0.723981 GGATCAGCTGTTGCGAAGTC 59.276 55.000 14.67 0.88 45.42 3.01
3503 3752 0.723981 GATCAGCTGTTGCGAAGTCC 59.276 55.000 14.67 0.00 45.42 3.85
3504 3753 1.016130 ATCAGCTGTTGCGAAGTCCG 61.016 55.000 14.67 0.00 45.42 4.79
3505 3754 2.357517 AGCTGTTGCGAAGTCCGG 60.358 61.111 0.00 0.00 45.42 5.14
3506 3755 4.090057 GCTGTTGCGAAGTCCGGC 62.090 66.667 0.00 0.00 39.04 6.13
3507 3756 3.777925 CTGTTGCGAAGTCCGGCG 61.778 66.667 0.00 0.00 39.04 6.46
3508 3757 4.287781 TGTTGCGAAGTCCGGCGA 62.288 61.111 9.30 0.00 39.04 5.54
3509 3758 3.479269 GTTGCGAAGTCCGGCGAG 61.479 66.667 9.30 0.00 39.04 5.03
3510 3759 4.735132 TTGCGAAGTCCGGCGAGG 62.735 66.667 9.30 0.00 42.97 4.63
3512 3761 3.818787 GCGAAGTCCGGCGAGGTA 61.819 66.667 9.30 0.00 41.99 3.08
3513 3762 3.117372 CGAAGTCCGGCGAGGTAT 58.883 61.111 9.30 0.00 41.99 2.73
3514 3763 1.789078 GCGAAGTCCGGCGAGGTATA 61.789 60.000 9.30 0.00 41.99 1.47
3515 3764 0.879765 CGAAGTCCGGCGAGGTATAT 59.120 55.000 9.30 0.00 41.99 0.86
3516 3765 2.079158 CGAAGTCCGGCGAGGTATATA 58.921 52.381 9.30 0.00 41.99 0.86
3517 3766 2.159599 CGAAGTCCGGCGAGGTATATAC 60.160 54.545 9.30 4.14 41.99 1.47
3518 3767 2.574006 AGTCCGGCGAGGTATATACA 57.426 50.000 9.30 0.00 41.99 2.29
3519 3768 3.083122 AGTCCGGCGAGGTATATACAT 57.917 47.619 9.30 7.53 41.99 2.29
3520 3769 3.428532 AGTCCGGCGAGGTATATACATT 58.571 45.455 9.30 2.25 41.99 2.71
3521 3770 4.592942 AGTCCGGCGAGGTATATACATTA 58.407 43.478 9.30 0.00 41.99 1.90
3522 3771 5.012239 AGTCCGGCGAGGTATATACATTAA 58.988 41.667 9.30 0.00 41.99 1.40
3523 3772 5.655532 AGTCCGGCGAGGTATATACATTAAT 59.344 40.000 9.30 0.00 41.99 1.40
3524 3773 6.154021 AGTCCGGCGAGGTATATACATTAATT 59.846 38.462 9.30 0.00 41.99 1.40
3525 3774 7.340232 AGTCCGGCGAGGTATATACATTAATTA 59.660 37.037 9.30 0.00 41.99 1.40
3526 3775 7.975616 GTCCGGCGAGGTATATACATTAATTAA 59.024 37.037 9.30 0.00 41.99 1.40
3527 3776 8.192774 TCCGGCGAGGTATATACATTAATTAAG 58.807 37.037 9.30 0.00 41.99 1.85
3528 3777 7.042925 CCGGCGAGGTATATACATTAATTAAGC 60.043 40.741 9.30 6.11 34.51 3.09
3529 3778 7.705325 CGGCGAGGTATATACATTAATTAAGCT 59.295 37.037 14.70 0.00 0.00 3.74
3530 3779 9.379791 GGCGAGGTATATACATTAATTAAGCTT 57.620 33.333 14.70 3.48 0.00 3.74
3555 3804 5.686159 GCTGACTAGCTAATTGATGCATT 57.314 39.130 0.00 0.00 46.57 3.56
3556 3805 6.791887 GCTGACTAGCTAATTGATGCATTA 57.208 37.500 0.00 0.00 46.57 1.90
3557 3806 7.194607 GCTGACTAGCTAATTGATGCATTAA 57.805 36.000 6.34 6.34 46.57 1.40
3558 3807 7.814642 GCTGACTAGCTAATTGATGCATTAAT 58.185 34.615 10.72 10.72 46.57 1.40
3559 3808 8.295288 GCTGACTAGCTAATTGATGCATTAATT 58.705 33.333 26.62 26.62 46.57 1.40
3560 3809 9.608617 CTGACTAGCTAATTGATGCATTAATTG 57.391 33.333 29.70 22.00 30.12 2.32
3561 3810 9.123902 TGACTAGCTAATTGATGCATTAATTGT 57.876 29.630 29.70 21.39 30.12 2.71
3562 3811 9.956720 GACTAGCTAATTGATGCATTAATTGTT 57.043 29.630 29.70 21.23 30.12 2.83
3566 3815 8.885722 AGCTAATTGATGCATTAATTGTTTTGG 58.114 29.630 29.70 13.92 30.12 3.28
3567 3816 8.667463 GCTAATTGATGCATTAATTGTTTTGGT 58.333 29.630 29.70 11.34 30.12 3.67
3571 3820 9.669887 ATTGATGCATTAATTGTTTTGGTATGT 57.330 25.926 10.72 0.00 0.00 2.29
3573 3822 9.579768 TGATGCATTAATTGTTTTGGTATGTAC 57.420 29.630 0.00 0.00 0.00 2.90
3574 3823 9.579768 GATGCATTAATTGTTTTGGTATGTACA 57.420 29.630 0.00 0.00 0.00 2.90
3606 3855 8.568676 AACTCTTCTTTCTTCTTTTATAGCCC 57.431 34.615 0.00 0.00 0.00 5.19
3607 3856 7.690256 ACTCTTCTTTCTTCTTTTATAGCCCA 58.310 34.615 0.00 0.00 0.00 5.36
3608 3857 7.608376 ACTCTTCTTTCTTCTTTTATAGCCCAC 59.392 37.037 0.00 0.00 0.00 4.61
3609 3858 6.884836 TCTTCTTTCTTCTTTTATAGCCCACC 59.115 38.462 0.00 0.00 0.00 4.61
3610 3859 6.134535 TCTTTCTTCTTTTATAGCCCACCA 57.865 37.500 0.00 0.00 0.00 4.17
3611 3860 6.180472 TCTTTCTTCTTTTATAGCCCACCAG 58.820 40.000 0.00 0.00 0.00 4.00
3612 3861 5.772393 TTCTTCTTTTATAGCCCACCAGA 57.228 39.130 0.00 0.00 0.00 3.86
3613 3862 5.975988 TCTTCTTTTATAGCCCACCAGAT 57.024 39.130 0.00 0.00 0.00 2.90
3614 3863 5.930135 TCTTCTTTTATAGCCCACCAGATC 58.070 41.667 0.00 0.00 0.00 2.75
3615 3864 4.336889 TCTTTTATAGCCCACCAGATCG 57.663 45.455 0.00 0.00 0.00 3.69
3616 3865 3.964688 TCTTTTATAGCCCACCAGATCGA 59.035 43.478 0.00 0.00 0.00 3.59
3617 3866 4.039245 TCTTTTATAGCCCACCAGATCGAG 59.961 45.833 0.00 0.00 0.00 4.04
3618 3867 1.257743 TATAGCCCACCAGATCGAGC 58.742 55.000 0.00 0.00 0.00 5.03
3619 3868 0.760567 ATAGCCCACCAGATCGAGCA 60.761 55.000 2.38 0.00 0.00 4.26
3620 3869 0.975556 TAGCCCACCAGATCGAGCAA 60.976 55.000 2.38 0.00 0.00 3.91
3621 3870 1.377202 GCCCACCAGATCGAGCAAA 60.377 57.895 2.38 0.00 0.00 3.68
3622 3871 0.960364 GCCCACCAGATCGAGCAAAA 60.960 55.000 2.38 0.00 0.00 2.44
3623 3872 0.804989 CCCACCAGATCGAGCAAAAC 59.195 55.000 2.38 0.00 0.00 2.43
3624 3873 1.611673 CCCACCAGATCGAGCAAAACT 60.612 52.381 2.38 0.00 0.00 2.66
3625 3874 2.154462 CCACCAGATCGAGCAAAACTT 58.846 47.619 2.38 0.00 0.00 2.66
3626 3875 2.160417 CCACCAGATCGAGCAAAACTTC 59.840 50.000 2.38 0.00 0.00 3.01
3627 3876 2.069273 ACCAGATCGAGCAAAACTTCG 58.931 47.619 2.38 0.00 0.00 3.79
3628 3877 1.394917 CCAGATCGAGCAAAACTTCGG 59.605 52.381 2.38 0.00 0.00 4.30
3629 3878 2.069273 CAGATCGAGCAAAACTTCGGT 58.931 47.619 2.38 0.00 0.00 4.69
3630 3879 3.250744 CAGATCGAGCAAAACTTCGGTA 58.749 45.455 2.38 0.00 0.00 4.02
3631 3880 3.678072 CAGATCGAGCAAAACTTCGGTAA 59.322 43.478 2.38 0.00 0.00 2.85
3632 3881 3.678548 AGATCGAGCAAAACTTCGGTAAC 59.321 43.478 2.38 0.00 0.00 2.50
3644 3893 2.493501 GGTAACGAGACGAGGCCC 59.506 66.667 0.00 0.00 0.00 5.80
3645 3894 2.101770 GTAACGAGACGAGGCCCG 59.898 66.667 11.48 11.48 45.44 6.13
3646 3895 2.046023 TAACGAGACGAGGCCCGA 60.046 61.111 18.74 0.00 41.76 5.14
3647 3896 1.675310 TAACGAGACGAGGCCCGAA 60.675 57.895 18.74 0.00 41.76 4.30
3648 3897 1.651240 TAACGAGACGAGGCCCGAAG 61.651 60.000 18.74 9.62 41.76 3.79
3649 3898 3.132139 CGAGACGAGGCCCGAAGA 61.132 66.667 18.74 0.00 41.76 2.87
3650 3899 2.697761 CGAGACGAGGCCCGAAGAA 61.698 63.158 18.74 0.00 41.76 2.52
3651 3900 1.590147 GAGACGAGGCCCGAAGAAA 59.410 57.895 18.74 0.00 41.76 2.52
3652 3901 0.037605 GAGACGAGGCCCGAAGAAAA 60.038 55.000 18.74 0.00 41.76 2.29
3653 3902 0.037232 AGACGAGGCCCGAAGAAAAG 60.037 55.000 18.74 0.00 41.76 2.27
3654 3903 1.003718 ACGAGGCCCGAAGAAAAGG 60.004 57.895 18.74 0.00 41.76 3.11
3655 3904 1.003718 CGAGGCCCGAAGAAAAGGT 60.004 57.895 0.00 0.00 41.76 3.50
3656 3905 0.605589 CGAGGCCCGAAGAAAAGGTT 60.606 55.000 0.00 0.00 41.76 3.50
3657 3906 0.881796 GAGGCCCGAAGAAAAGGTTG 59.118 55.000 0.00 0.00 0.00 3.77
3658 3907 1.179174 AGGCCCGAAGAAAAGGTTGC 61.179 55.000 0.00 0.00 0.00 4.17
3659 3908 1.081442 GCCCGAAGAAAAGGTTGCG 60.081 57.895 0.00 0.00 0.00 4.85
3660 3909 1.081442 CCCGAAGAAAAGGTTGCGC 60.081 57.895 0.00 0.00 0.00 6.09
3661 3910 1.081442 CCGAAGAAAAGGTTGCGCC 60.081 57.895 4.18 0.00 37.58 6.53
3662 3911 1.081442 CGAAGAAAAGGTTGCGCCC 60.081 57.895 4.18 0.00 38.26 6.13
3663 3912 1.791103 CGAAGAAAAGGTTGCGCCCA 61.791 55.000 4.18 0.00 38.26 5.36
3664 3913 0.039165 GAAGAAAAGGTTGCGCCCAG 60.039 55.000 4.18 0.00 38.26 4.45
3665 3914 0.467290 AAGAAAAGGTTGCGCCCAGA 60.467 50.000 4.18 0.00 38.26 3.86
3666 3915 0.251341 AGAAAAGGTTGCGCCCAGAT 60.251 50.000 4.18 0.00 38.26 2.90
3667 3916 0.109132 GAAAAGGTTGCGCCCAGATG 60.109 55.000 4.18 0.00 38.26 2.90
3668 3917 0.539438 AAAAGGTTGCGCCCAGATGA 60.539 50.000 4.18 0.00 38.26 2.92
3669 3918 0.539438 AAAGGTTGCGCCCAGATGAA 60.539 50.000 4.18 0.00 38.26 2.57
3670 3919 0.539438 AAGGTTGCGCCCAGATGAAA 60.539 50.000 4.18 0.00 38.26 2.69
3671 3920 0.962356 AGGTTGCGCCCAGATGAAAG 60.962 55.000 4.18 0.00 38.26 2.62
3672 3921 1.508088 GTTGCGCCCAGATGAAAGG 59.492 57.895 4.18 0.00 0.00 3.11
3673 3922 1.074775 TTGCGCCCAGATGAAAGGT 59.925 52.632 4.18 0.00 0.00 3.50
3674 3923 0.539438 TTGCGCCCAGATGAAAGGTT 60.539 50.000 4.18 0.00 0.00 3.50
3675 3924 0.960364 TGCGCCCAGATGAAAGGTTC 60.960 55.000 4.18 0.00 0.00 3.62
3676 3925 0.960364 GCGCCCAGATGAAAGGTTCA 60.960 55.000 0.00 0.00 45.01 3.18
3687 3936 3.753815 TGAAAGGTTCATGATCACAGCA 58.246 40.909 0.00 0.00 34.08 4.41
3688 3937 4.143543 TGAAAGGTTCATGATCACAGCAA 58.856 39.130 0.00 0.00 34.08 3.91
3689 3938 4.768448 TGAAAGGTTCATGATCACAGCAAT 59.232 37.500 0.00 0.00 34.08 3.56
3690 3939 4.978083 AAGGTTCATGATCACAGCAATC 57.022 40.909 0.00 0.00 0.00 2.67
3691 3940 2.941064 AGGTTCATGATCACAGCAATCG 59.059 45.455 0.00 0.00 0.00 3.34
3692 3941 2.540361 GGTTCATGATCACAGCAATCGC 60.540 50.000 0.00 0.00 38.99 4.58
3693 3942 0.932399 TCATGATCACAGCAATCGCG 59.068 50.000 0.00 0.00 45.49 5.87
3694 3943 0.041576 CATGATCACAGCAATCGCGG 60.042 55.000 6.13 0.00 45.49 6.46
3695 3944 0.179076 ATGATCACAGCAATCGCGGA 60.179 50.000 6.13 0.00 45.49 5.54
3696 3945 1.083806 TGATCACAGCAATCGCGGAC 61.084 55.000 6.13 0.00 45.49 4.79
3697 3946 2.082437 GATCACAGCAATCGCGGACG 62.082 60.000 6.13 0.00 45.49 4.79
3709 3958 4.444838 CGGACGATGGCCAACCGA 62.445 66.667 29.72 0.00 45.31 4.69
3710 3959 2.511600 GGACGATGGCCAACCGAG 60.512 66.667 29.72 14.35 39.70 4.63
3711 3960 2.264794 GACGATGGCCAACCGAGT 59.735 61.111 29.72 17.08 39.70 4.18
3712 3961 2.047274 ACGATGGCCAACCGAGTG 60.047 61.111 29.72 10.04 39.70 3.51
3713 3962 2.264480 CGATGGCCAACCGAGTGA 59.736 61.111 21.87 0.00 39.70 3.41
3714 3963 1.375396 CGATGGCCAACCGAGTGAA 60.375 57.895 21.87 0.00 39.70 3.18
3715 3964 1.635663 CGATGGCCAACCGAGTGAAC 61.636 60.000 21.87 0.00 39.70 3.18
3716 3965 1.303317 ATGGCCAACCGAGTGAACC 60.303 57.895 10.96 0.00 39.70 3.62
3717 3966 2.671963 GGCCAACCGAGTGAACCC 60.672 66.667 0.00 0.00 0.00 4.11
3718 3967 3.047877 GCCAACCGAGTGAACCCG 61.048 66.667 0.00 0.00 0.00 5.28
3725 3974 4.754667 GAGTGAACCCGGCGGACC 62.755 72.222 30.79 16.07 0.00 4.46
3727 3976 4.629523 GTGAACCCGGCGGACCAA 62.630 66.667 30.79 7.44 34.57 3.67
3728 3977 4.323477 TGAACCCGGCGGACCAAG 62.323 66.667 30.79 13.10 34.57 3.61
3732 3981 4.856801 CCCGGCGGACCAAGGATG 62.857 72.222 30.79 2.47 34.57 3.51
3734 3983 4.776322 CGGCGGACCAAGGATGCA 62.776 66.667 0.00 0.00 34.57 3.96
3735 3984 2.124151 GGCGGACCAAGGATGCAT 60.124 61.111 0.00 0.00 35.26 3.96
3736 3985 1.754234 GGCGGACCAAGGATGCATT 60.754 57.895 0.00 0.00 35.26 3.56
3737 3986 1.322538 GGCGGACCAAGGATGCATTT 61.323 55.000 0.00 0.00 35.26 2.32
3738 3987 0.532115 GCGGACCAAGGATGCATTTT 59.468 50.000 0.00 0.00 0.00 1.82
3739 3988 1.469767 GCGGACCAAGGATGCATTTTC 60.470 52.381 0.00 0.00 0.00 2.29
3740 3989 2.094675 CGGACCAAGGATGCATTTTCT 58.905 47.619 0.00 0.00 0.00 2.52
3741 3990 2.159338 CGGACCAAGGATGCATTTTCTG 60.159 50.000 0.00 0.00 0.00 3.02
3759 4008 1.725641 TGCTCAGTGCGGAACTATTG 58.274 50.000 0.00 0.00 46.63 1.90
3760 4009 1.001974 TGCTCAGTGCGGAACTATTGT 59.998 47.619 0.00 0.00 46.63 2.71
3761 4010 2.076863 GCTCAGTGCGGAACTATTGTT 58.923 47.619 0.00 0.00 36.83 2.83
3762 4011 3.259064 GCTCAGTGCGGAACTATTGTTA 58.741 45.455 0.00 0.00 36.83 2.41
3763 4012 3.307242 GCTCAGTGCGGAACTATTGTTAG 59.693 47.826 0.00 0.00 36.83 2.34
3764 4013 3.857052 TCAGTGCGGAACTATTGTTAGG 58.143 45.455 0.00 0.00 36.83 2.69
3765 4014 2.936498 CAGTGCGGAACTATTGTTAGGG 59.064 50.000 0.00 0.00 36.83 3.53
3766 4015 2.835764 AGTGCGGAACTATTGTTAGGGA 59.164 45.455 0.00 0.00 37.36 4.20
3767 4016 2.934553 GTGCGGAACTATTGTTAGGGAC 59.065 50.000 0.00 0.00 36.39 4.46
3768 4017 2.568062 TGCGGAACTATTGTTAGGGACA 59.432 45.455 0.00 0.00 36.39 4.02
3769 4018 3.195661 GCGGAACTATTGTTAGGGACAG 58.804 50.000 0.00 0.00 39.94 3.51
3770 4019 3.195661 CGGAACTATTGTTAGGGACAGC 58.804 50.000 0.00 0.00 39.94 4.40
3771 4020 3.369052 CGGAACTATTGTTAGGGACAGCA 60.369 47.826 0.00 0.00 39.94 4.41
3772 4021 4.683400 CGGAACTATTGTTAGGGACAGCAT 60.683 45.833 0.00 0.00 39.94 3.79
3773 4022 4.816925 GGAACTATTGTTAGGGACAGCATC 59.183 45.833 0.00 0.00 39.94 3.91
3774 4023 4.781934 AACTATTGTTAGGGACAGCATCC 58.218 43.478 0.00 0.00 39.94 3.51
3781 4030 4.766970 GGACAGCATCCCGATCAG 57.233 61.111 0.00 0.00 42.46 2.90
3782 4031 1.596477 GGACAGCATCCCGATCAGC 60.596 63.158 0.00 0.00 42.46 4.26
3783 4032 1.144716 GACAGCATCCCGATCAGCA 59.855 57.895 0.00 0.00 0.00 4.41
3784 4033 0.250209 GACAGCATCCCGATCAGCAT 60.250 55.000 0.00 0.00 0.00 3.79
3785 4034 0.250209 ACAGCATCCCGATCAGCATC 60.250 55.000 0.00 0.00 0.00 3.91
3786 4035 0.954449 CAGCATCCCGATCAGCATCC 60.954 60.000 0.00 0.00 0.00 3.51
3787 4036 1.071987 GCATCCCGATCAGCATCCA 59.928 57.895 0.00 0.00 0.00 3.41
3788 4037 1.233285 GCATCCCGATCAGCATCCAC 61.233 60.000 0.00 0.00 0.00 4.02
3789 4038 0.947660 CATCCCGATCAGCATCCACG 60.948 60.000 0.00 0.00 0.00 4.94
3790 4039 1.402896 ATCCCGATCAGCATCCACGT 61.403 55.000 0.00 0.00 0.00 4.49
3791 4040 0.753848 TCCCGATCAGCATCCACGTA 60.754 55.000 0.00 0.00 0.00 3.57
3792 4041 0.318441 CCCGATCAGCATCCACGTAT 59.682 55.000 0.00 0.00 0.00 3.06
3793 4042 1.422388 CCGATCAGCATCCACGTATG 58.578 55.000 0.00 0.00 0.00 2.39
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 0.537653 GAGCTACTGGGGTCCTCAAC 59.462 60.000 0.00 0.00 0.00 3.18
24 25 3.393278 CCTCTACCACTAGGAGAGCTACT 59.607 52.174 0.00 0.00 37.62 2.57
33 34 2.233305 ACACCACCTCTACCACTAGG 57.767 55.000 0.00 0.00 42.21 3.02
34 35 2.353803 GCAACACCACCTCTACCACTAG 60.354 54.545 0.00 0.00 0.00 2.57
36 37 0.396811 GCAACACCACCTCTACCACT 59.603 55.000 0.00 0.00 0.00 4.00
68 69 1.961277 GCCCAAGGCGGATACATCG 60.961 63.158 0.00 0.00 39.62 3.84
101 102 2.563620 TCTATACAAACTCACGCCACCA 59.436 45.455 0.00 0.00 0.00 4.17
108 109 7.261325 TCATTGAGAGCTCTATACAAACTCAC 58.739 38.462 18.25 0.00 33.64 3.51
140 141 9.726438 AGCTTTCGTCCAGCTTTATATATAAAT 57.274 29.630 16.41 2.57 45.82 1.40
164 165 7.924103 TGATTTTCTTCTTTACCGAAAAAGC 57.076 32.000 0.00 0.00 39.29 3.51
166 167 7.436970 GCCTTGATTTTCTTCTTTACCGAAAAA 59.563 33.333 0.00 0.00 39.29 1.94
213 214 1.227380 CTACAGAGATGGTGCCGCC 60.227 63.158 0.00 0.00 37.90 6.13
214 215 0.108138 AACTACAGAGATGGTGCCGC 60.108 55.000 0.00 0.00 0.00 6.53
220 221 9.482627 GGTTTTATGATAGAACTACAGAGATGG 57.517 37.037 5.94 0.00 0.00 3.51
233 234 8.375506 GTCCATGGTCATAGGTTTTATGATAGA 58.624 37.037 12.58 0.00 36.48 1.98
284 323 1.323271 TGCGCCCTTTGTTTGGTCAA 61.323 50.000 4.18 0.00 0.00 3.18
340 379 4.827284 GGGATGGGTGATAACTAACATTGG 59.173 45.833 0.00 0.00 0.00 3.16
348 387 2.573463 ACTTGGGGATGGGTGATAACT 58.427 47.619 0.00 0.00 0.00 2.24
360 399 3.227614 GGCTTGAAGTTTTACTTGGGGA 58.772 45.455 0.00 0.00 38.80 4.81
534 618 4.575885 TCAACTTCTAAAGATCCCAACGG 58.424 43.478 0.00 0.00 0.00 4.44
550 634 3.181465 ACAAGAGGTCACGTGATCAACTT 60.181 43.478 29.42 26.79 0.00 2.66
791 880 9.725019 TTCTGTATTGTAGTTCATGTCAAGAAT 57.275 29.630 0.00 0.00 0.00 2.40
801 890 6.440647 AGTGATCCCTTCTGTATTGTAGTTCA 59.559 38.462 0.00 0.00 0.00 3.18
804 893 6.875972 AAGTGATCCCTTCTGTATTGTAGT 57.124 37.500 0.00 0.00 0.00 2.73
809 898 9.838339 CTTTACATAAGTGATCCCTTCTGTATT 57.162 33.333 14.06 0.00 35.35 1.89
818 907 9.924650 ACGTATATTCTTTACATAAGTGATCCC 57.075 33.333 0.00 0.00 0.00 3.85
836 928 4.162320 CAGCCCCTCCATGATACGTATATT 59.838 45.833 8.34 0.00 0.00 1.28
842 934 0.758734 TTCAGCCCCTCCATGATACG 59.241 55.000 0.00 0.00 0.00 3.06
843 935 2.038295 CTCTTCAGCCCCTCCATGATAC 59.962 54.545 0.00 0.00 0.00 2.24
877 997 1.834263 GCCTGGATCTTGAGGTACACT 59.166 52.381 0.00 0.00 0.00 3.55
964 1084 1.100510 CCGGTCGTATTCTCCTGTGA 58.899 55.000 0.00 0.00 0.00 3.58
977 1097 1.139989 GACACATGCATATCCGGTCG 58.860 55.000 0.00 0.00 0.00 4.79
1026 1146 7.144000 GGTAACCGTAATATTCTCGTTCAGAT 58.856 38.462 10.53 0.00 0.00 2.90
1058 1178 1.001048 CATTGAAGCCGGCCATACATG 60.001 52.381 26.15 15.40 0.00 3.21
1092 1212 0.254462 TACCTTTGCATCCATCCGCA 59.746 50.000 0.00 0.00 36.05 5.69
1101 1221 1.979855 TGCAGTGTGTACCTTTGCAT 58.020 45.000 7.17 0.00 39.61 3.96
1134 1291 2.110213 GGTGTGCACAACGGAGGA 59.890 61.111 23.59 0.00 0.00 3.71
1136 1293 1.961277 GGAGGTGTGCACAACGGAG 60.961 63.158 28.24 0.00 38.92 4.63
1140 1297 4.324267 AGTATTTAGGAGGTGTGCACAAC 58.676 43.478 27.66 27.66 0.00 3.32
1141 1298 4.634012 AGTATTTAGGAGGTGTGCACAA 57.366 40.909 23.59 3.11 0.00 3.33
1142 1299 4.775780 AGTAGTATTTAGGAGGTGTGCACA 59.224 41.667 17.42 17.42 0.00 4.57
1143 1300 5.340439 AGTAGTATTTAGGAGGTGTGCAC 57.660 43.478 10.75 10.75 0.00 4.57
1145 1302 9.640963 CATATTAGTAGTATTTAGGAGGTGTGC 57.359 37.037 0.00 0.00 0.00 4.57
1146 1303 9.640963 GCATATTAGTAGTATTTAGGAGGTGTG 57.359 37.037 0.00 0.00 0.00 3.82
1147 1304 9.375974 TGCATATTAGTAGTATTTAGGAGGTGT 57.624 33.333 0.00 0.00 0.00 4.16
1159 1317 9.874205 AAAGGTACGTTTTGCATATTAGTAGTA 57.126 29.630 7.71 0.00 0.00 1.82
1160 1318 8.782339 AAAGGTACGTTTTGCATATTAGTAGT 57.218 30.769 7.71 0.00 0.00 2.73
1180 1338 9.890915 TTATTATGGCATTTCCCTAATAAAGGT 57.109 29.630 4.78 0.00 44.90 3.50
1186 1344 8.971032 TCCATTTATTATGGCATTTCCCTAAT 57.029 30.769 4.78 0.32 38.60 1.73
1211 1371 2.002586 CTCGAAAAGGTGTGCGATCAT 58.997 47.619 0.00 0.00 31.87 2.45
1282 1463 3.009916 AGAGGTGGAGCTTGATCATGTTT 59.990 43.478 10.05 0.00 0.00 2.83
1285 1466 4.620589 ATAGAGGTGGAGCTTGATCATG 57.379 45.455 0.00 0.00 0.00 3.07
1286 1467 5.150715 TGTATAGAGGTGGAGCTTGATCAT 58.849 41.667 0.00 0.00 0.00 2.45
1289 1470 6.318913 AGTATGTATAGAGGTGGAGCTTGAT 58.681 40.000 0.00 0.00 0.00 2.57
1298 1479 6.106003 TGTGCACAAAGTATGTATAGAGGTG 58.894 40.000 19.28 0.00 41.46 4.00
1308 1489 4.458989 AGGTTACCATGTGCACAAAGTATG 59.541 41.667 25.72 16.77 0.00 2.39
1309 1490 4.458989 CAGGTTACCATGTGCACAAAGTAT 59.541 41.667 25.72 10.47 0.00 2.12
1316 1497 3.605634 TCATACAGGTTACCATGTGCAC 58.394 45.455 10.75 10.75 0.00 4.57
1514 1727 6.155910 TGTTATGGCAAATCCCATTACATGTT 59.844 34.615 2.30 0.00 45.04 2.71
1562 1775 9.416284 TCATACACTGTATTACTAGGACATTCA 57.584 33.333 0.00 0.00 0.00 2.57
1598 1811 0.884259 TGGTCGGTGTGCACATCTTG 60.884 55.000 26.71 13.17 0.00 3.02
1645 1858 0.107081 TGGAGTTGGTTGTACCGTGG 59.893 55.000 0.00 0.00 42.58 4.94
1648 1862 2.178912 ATGTGGAGTTGGTTGTACCG 57.821 50.000 0.00 0.00 42.58 4.02
1702 1928 4.332819 GGCGATACCTGTAATGATTATGCC 59.667 45.833 0.00 0.00 34.51 4.40
1820 2046 4.576053 GGTTCTGCCAAAAATGCTTTCTTT 59.424 37.500 0.00 0.00 37.17 2.52
1939 2165 3.444742 ACGATACGTGTGGGATCAAAGTA 59.555 43.478 0.00 0.00 39.18 2.24
2141 2368 2.663826 CACTAGCAGTGGGACTTCTC 57.336 55.000 8.03 0.00 42.35 2.87
2585 2812 4.844085 TCATCTCCCAAAGGAAGTAGTTGA 59.156 41.667 0.00 0.00 43.40 3.18
2765 2992 5.344743 TGATCTCAACCTTTTAGATCGCT 57.655 39.130 0.00 0.00 45.63 4.93
2791 3018 7.397892 TGTCTTCATTTTTGACAACAACCTA 57.602 32.000 0.00 0.00 37.71 3.08
2802 3029 4.634199 AGGGTTGCATGTCTTCATTTTTG 58.366 39.130 0.00 0.00 31.15 2.44
2848 3075 3.757493 GGAGTAGTCAACTTCGGAAGAGA 59.243 47.826 23.74 16.82 43.69 3.10
2858 3085 2.289592 ACCACTCGGAGTAGTCAACT 57.710 50.000 10.87 0.00 42.80 3.16
2913 3140 3.057315 GCTCCAAGCTGTAGCAATTTTGA 60.057 43.478 6.65 0.00 45.16 2.69
2971 3198 2.186076 GCGAAGAACACGATGGACTAG 58.814 52.381 0.00 0.00 0.00 2.57
2972 3199 1.542472 TGCGAAGAACACGATGGACTA 59.458 47.619 0.00 0.00 0.00 2.59
2973 3200 0.317160 TGCGAAGAACACGATGGACT 59.683 50.000 0.00 0.00 0.00 3.85
2974 3201 1.359848 ATGCGAAGAACACGATGGAC 58.640 50.000 0.00 0.00 0.00 4.02
2989 3218 5.938322 AGTAGACAACCAAACATTAATGCG 58.062 37.500 15.48 4.43 0.00 4.73
3034 3263 4.191544 CTCTCCATCATAGGACGCAAAAA 58.808 43.478 0.00 0.00 33.19 1.94
3035 3264 3.432186 CCTCTCCATCATAGGACGCAAAA 60.432 47.826 0.00 0.00 33.19 2.44
3075 3304 6.203915 CGCCCATTATTTAGTGCACTATACAA 59.796 38.462 26.54 17.76 0.00 2.41
3154 3383 5.305139 GGTACATCCGTAGCACAATTTTT 57.695 39.130 0.00 0.00 44.02 1.94
3155 3384 4.957759 GGTACATCCGTAGCACAATTTT 57.042 40.909 0.00 0.00 44.02 1.82
3194 3427 1.832883 TACAATTCACAATGCGGCCT 58.167 45.000 0.00 0.00 0.00 5.19
3265 3509 9.463443 GTAAAAGCATTACTTGATTTGAACACT 57.537 29.630 5.45 0.00 42.89 3.55
3285 3531 4.664150 TTTGGGCAACTCCAAGTAAAAG 57.336 40.909 0.00 0.00 46.19 2.27
3339 3586 8.224620 AGATATCCTAATTTTATGGAGTGGCT 57.775 34.615 0.00 0.00 32.95 4.75
3359 3608 7.015292 TGAGGTCCGAAAGCTATAACAAGATAT 59.985 37.037 0.00 0.00 35.33 1.63
3369 3618 3.244353 CCATGATGAGGTCCGAAAGCTAT 60.244 47.826 0.00 0.00 35.33 2.97
3382 3631 4.712051 TTATGGAAGGTCCCATGATGAG 57.288 45.455 5.74 0.00 45.89 2.90
3394 3643 9.136323 AGCTTGATAAGGTAATTTTATGGAAGG 57.864 33.333 0.00 0.00 37.49 3.46
3398 3647 8.463930 TGGAGCTTGATAAGGTAATTTTATGG 57.536 34.615 0.00 0.00 39.77 2.74
3408 3657 3.121929 TCCTCTGGAGCTTGATAAGGT 57.878 47.619 0.00 0.00 42.93 3.50
3415 3664 2.038295 ACAAGAGTTCCTCTGGAGCTTG 59.962 50.000 16.72 16.72 43.17 4.01
3417 3666 1.622811 CACAAGAGTTCCTCTGGAGCT 59.377 52.381 2.64 2.64 45.73 4.09
3423 3672 3.326297 CCTTCTTCCACAAGAGTTCCTCT 59.674 47.826 0.00 0.00 43.37 3.69
3436 3685 3.259374 GTCATCACAGTCTCCTTCTTCCA 59.741 47.826 0.00 0.00 0.00 3.53
3440 3689 1.821753 CCGTCATCACAGTCTCCTTCT 59.178 52.381 0.00 0.00 0.00 2.85
3441 3690 1.737363 GCCGTCATCACAGTCTCCTTC 60.737 57.143 0.00 0.00 0.00 3.46
3442 3691 0.247736 GCCGTCATCACAGTCTCCTT 59.752 55.000 0.00 0.00 0.00 3.36
3443 3692 0.613292 AGCCGTCATCACAGTCTCCT 60.613 55.000 0.00 0.00 0.00 3.69
3444 3693 0.179124 GAGCCGTCATCACAGTCTCC 60.179 60.000 0.00 0.00 0.00 3.71
3445 3694 0.179124 GGAGCCGTCATCACAGTCTC 60.179 60.000 0.00 0.00 0.00 3.36
3446 3695 1.893786 GGAGCCGTCATCACAGTCT 59.106 57.895 0.00 0.00 0.00 3.24
3447 3696 1.517257 CGGAGCCGTCATCACAGTC 60.517 63.158 0.00 0.00 34.35 3.51
3448 3697 1.323271 ATCGGAGCCGTCATCACAGT 61.323 55.000 8.96 0.00 40.74 3.55
3449 3698 0.873312 CATCGGAGCCGTCATCACAG 60.873 60.000 8.96 0.00 40.74 3.66
3450 3699 1.141665 CATCGGAGCCGTCATCACA 59.858 57.895 8.96 0.00 40.74 3.58
3451 3700 0.872021 GTCATCGGAGCCGTCATCAC 60.872 60.000 8.96 0.00 40.74 3.06
3452 3701 1.437573 GTCATCGGAGCCGTCATCA 59.562 57.895 8.96 0.00 40.74 3.07
3453 3702 1.300233 GGTCATCGGAGCCGTCATC 60.300 63.158 8.96 0.00 40.74 2.92
3454 3703 2.815308 GGTCATCGGAGCCGTCAT 59.185 61.111 8.96 0.00 40.74 3.06
3455 3704 3.822192 CGGTCATCGGAGCCGTCA 61.822 66.667 8.96 0.00 40.53 4.35
3456 3705 3.060020 TTCGGTCATCGGAGCCGTC 62.060 63.158 8.96 0.00 45.11 4.79
3457 3706 3.066190 TTCGGTCATCGGAGCCGT 61.066 61.111 8.96 0.00 45.11 5.68
3458 3707 2.582498 GTTCGGTCATCGGAGCCG 60.582 66.667 1.74 1.74 46.12 5.52
3459 3708 2.582498 CGTTCGGTCATCGGAGCC 60.582 66.667 0.00 0.00 38.30 4.70
3460 3709 2.582498 CCGTTCGGTCATCGGAGC 60.582 66.667 2.82 0.00 46.05 4.70
3461 3710 3.193757 TCCGTTCGGTCATCGGAG 58.806 61.111 11.04 0.00 46.54 4.63
3463 3712 1.226603 GACTCCGTTCGGTCATCGG 60.227 63.158 11.04 0.00 44.76 4.18
3464 3713 1.582937 CGACTCCGTTCGGTCATCG 60.583 63.158 11.04 13.54 40.90 3.84
3465 3714 4.379221 CGACTCCGTTCGGTCATC 57.621 61.111 11.04 6.61 35.26 2.92
3471 3720 1.064296 CTGATCCCGACTCCGTTCG 59.936 63.158 0.00 0.00 38.80 3.95
3472 3721 1.227002 GCTGATCCCGACTCCGTTC 60.227 63.158 0.00 0.00 0.00 3.95
3473 3722 1.682684 AGCTGATCCCGACTCCGTT 60.683 57.895 0.00 0.00 0.00 4.44
3474 3723 2.043852 AGCTGATCCCGACTCCGT 60.044 61.111 0.00 0.00 0.00 4.69
3475 3724 1.949847 AACAGCTGATCCCGACTCCG 61.950 60.000 23.35 0.00 0.00 4.63
3476 3725 0.460987 CAACAGCTGATCCCGACTCC 60.461 60.000 23.35 0.00 0.00 3.85
3477 3726 1.086634 GCAACAGCTGATCCCGACTC 61.087 60.000 23.35 0.00 0.00 3.36
3478 3727 1.078848 GCAACAGCTGATCCCGACT 60.079 57.895 23.35 0.00 0.00 4.18
3479 3728 2.456119 CGCAACAGCTGATCCCGAC 61.456 63.158 23.35 1.23 0.00 4.79
3480 3729 2.125552 CGCAACAGCTGATCCCGA 60.126 61.111 23.35 0.00 0.00 5.14
3481 3730 1.699656 CTTCGCAACAGCTGATCCCG 61.700 60.000 23.35 16.35 0.00 5.14
3482 3731 0.674895 ACTTCGCAACAGCTGATCCC 60.675 55.000 23.35 4.57 0.00 3.85
3483 3732 0.723981 GACTTCGCAACAGCTGATCC 59.276 55.000 23.35 0.00 0.00 3.36
3484 3733 0.723981 GGACTTCGCAACAGCTGATC 59.276 55.000 23.35 7.62 0.00 2.92
3485 3734 1.016130 CGGACTTCGCAACAGCTGAT 61.016 55.000 23.35 5.41 0.00 2.90
3486 3735 1.664649 CGGACTTCGCAACAGCTGA 60.665 57.895 23.35 0.00 0.00 4.26
3487 3736 2.671177 CCGGACTTCGCAACAGCTG 61.671 63.158 13.48 13.48 37.59 4.24
3488 3737 2.357517 CCGGACTTCGCAACAGCT 60.358 61.111 0.00 0.00 37.59 4.24
3489 3738 4.090057 GCCGGACTTCGCAACAGC 62.090 66.667 5.05 0.00 37.59 4.40
3490 3739 3.777925 CGCCGGACTTCGCAACAG 61.778 66.667 5.05 0.00 37.59 3.16
3491 3740 4.287781 TCGCCGGACTTCGCAACA 62.288 61.111 5.05 0.00 37.59 3.33
3492 3741 3.479269 CTCGCCGGACTTCGCAAC 61.479 66.667 5.05 0.00 37.59 4.17
3493 3742 4.735132 CCTCGCCGGACTTCGCAA 62.735 66.667 5.05 0.00 37.59 4.85
3495 3744 1.789078 TATACCTCGCCGGACTTCGC 61.789 60.000 5.05 0.00 37.59 4.70
3496 3745 0.879765 ATATACCTCGCCGGACTTCG 59.120 55.000 5.05 0.00 36.31 3.79
3497 3746 2.816087 TGTATATACCTCGCCGGACTTC 59.184 50.000 5.05 0.00 36.31 3.01
3498 3747 2.867624 TGTATATACCTCGCCGGACTT 58.132 47.619 5.05 0.00 36.31 3.01
3499 3748 2.574006 TGTATATACCTCGCCGGACT 57.426 50.000 5.05 0.00 36.31 3.85
3500 3749 3.863142 AATGTATATACCTCGCCGGAC 57.137 47.619 5.05 0.00 36.31 4.79
3501 3750 6.534475 AATTAATGTATATACCTCGCCGGA 57.466 37.500 5.05 0.00 36.31 5.14
3502 3751 7.042925 GCTTAATTAATGTATATACCTCGCCGG 60.043 40.741 10.38 0.00 39.35 6.13
3503 3752 7.705325 AGCTTAATTAATGTATATACCTCGCCG 59.295 37.037 10.38 0.00 0.00 6.46
3504 3753 8.943909 AGCTTAATTAATGTATATACCTCGCC 57.056 34.615 10.38 0.00 0.00 5.54
3534 3783 9.608617 CAATTAATGCATCAATTAGCTAGTCAG 57.391 33.333 7.50 0.00 0.00 3.51
3535 3784 9.123902 ACAATTAATGCATCAATTAGCTAGTCA 57.876 29.630 7.50 0.00 0.00 3.41
3536 3785 9.956720 AACAATTAATGCATCAATTAGCTAGTC 57.043 29.630 7.50 0.00 0.00 2.59
3540 3789 8.885722 CCAAAACAATTAATGCATCAATTAGCT 58.114 29.630 7.50 0.00 0.00 3.32
3541 3790 8.667463 ACCAAAACAATTAATGCATCAATTAGC 58.333 29.630 7.50 0.00 0.00 3.09
3545 3794 9.669887 ACATACCAAAACAATTAATGCATCAAT 57.330 25.926 0.00 0.00 0.00 2.57
3547 3796 9.579768 GTACATACCAAAACAATTAATGCATCA 57.420 29.630 0.00 0.00 0.00 3.07
3548 3797 9.579768 TGTACATACCAAAACAATTAATGCATC 57.420 29.630 0.00 0.00 0.00 3.91
3580 3829 9.668497 GGGCTATAAAAGAAGAAAGAAGAGTTA 57.332 33.333 0.00 0.00 0.00 2.24
3581 3830 8.164070 TGGGCTATAAAAGAAGAAAGAAGAGTT 58.836 33.333 0.00 0.00 0.00 3.01
3582 3831 7.608376 GTGGGCTATAAAAGAAGAAAGAAGAGT 59.392 37.037 0.00 0.00 0.00 3.24
3583 3832 7.066404 GGTGGGCTATAAAAGAAGAAAGAAGAG 59.934 40.741 0.00 0.00 0.00 2.85
3584 3833 6.884836 GGTGGGCTATAAAAGAAGAAAGAAGA 59.115 38.462 0.00 0.00 0.00 2.87
3585 3834 6.659242 TGGTGGGCTATAAAAGAAGAAAGAAG 59.341 38.462 0.00 0.00 0.00 2.85
3586 3835 6.548321 TGGTGGGCTATAAAAGAAGAAAGAA 58.452 36.000 0.00 0.00 0.00 2.52
3587 3836 6.012858 TCTGGTGGGCTATAAAAGAAGAAAGA 60.013 38.462 0.00 0.00 0.00 2.52
3588 3837 6.180472 TCTGGTGGGCTATAAAAGAAGAAAG 58.820 40.000 0.00 0.00 0.00 2.62
3589 3838 6.134535 TCTGGTGGGCTATAAAAGAAGAAA 57.865 37.500 0.00 0.00 0.00 2.52
3590 3839 5.772393 TCTGGTGGGCTATAAAAGAAGAA 57.228 39.130 0.00 0.00 0.00 2.52
3591 3840 5.453339 CGATCTGGTGGGCTATAAAAGAAGA 60.453 44.000 0.00 0.00 0.00 2.87
3592 3841 4.752101 CGATCTGGTGGGCTATAAAAGAAG 59.248 45.833 0.00 0.00 0.00 2.85
3593 3842 4.407621 TCGATCTGGTGGGCTATAAAAGAA 59.592 41.667 0.00 0.00 0.00 2.52
3594 3843 3.964688 TCGATCTGGTGGGCTATAAAAGA 59.035 43.478 0.00 0.00 0.00 2.52
3595 3844 4.310769 CTCGATCTGGTGGGCTATAAAAG 58.689 47.826 0.00 0.00 0.00 2.27
3596 3845 3.494398 GCTCGATCTGGTGGGCTATAAAA 60.494 47.826 0.00 0.00 0.00 1.52
3597 3846 2.037251 GCTCGATCTGGTGGGCTATAAA 59.963 50.000 0.00 0.00 0.00 1.40
3598 3847 1.618837 GCTCGATCTGGTGGGCTATAA 59.381 52.381 0.00 0.00 0.00 0.98
3599 3848 1.257743 GCTCGATCTGGTGGGCTATA 58.742 55.000 0.00 0.00 0.00 1.31
3600 3849 0.760567 TGCTCGATCTGGTGGGCTAT 60.761 55.000 0.00 0.00 0.00 2.97
3601 3850 0.975556 TTGCTCGATCTGGTGGGCTA 60.976 55.000 0.00 0.00 0.00 3.93
3602 3851 1.841302 TTTGCTCGATCTGGTGGGCT 61.841 55.000 0.00 0.00 0.00 5.19
3603 3852 0.960364 TTTTGCTCGATCTGGTGGGC 60.960 55.000 0.00 0.00 0.00 5.36
3604 3853 0.804989 GTTTTGCTCGATCTGGTGGG 59.195 55.000 0.00 0.00 0.00 4.61
3605 3854 1.813513 AGTTTTGCTCGATCTGGTGG 58.186 50.000 0.00 0.00 0.00 4.61
3606 3855 2.159787 CGAAGTTTTGCTCGATCTGGTG 60.160 50.000 0.00 0.00 0.00 4.17
3607 3856 2.069273 CGAAGTTTTGCTCGATCTGGT 58.931 47.619 0.00 0.00 0.00 4.00
3608 3857 1.394917 CCGAAGTTTTGCTCGATCTGG 59.605 52.381 0.00 0.00 0.00 3.86
3609 3858 2.069273 ACCGAAGTTTTGCTCGATCTG 58.931 47.619 0.00 0.00 0.00 2.90
3610 3859 2.457366 ACCGAAGTTTTGCTCGATCT 57.543 45.000 0.00 0.00 0.00 2.75
3611 3860 3.481467 CGTTACCGAAGTTTTGCTCGATC 60.481 47.826 0.00 0.00 35.63 3.69
3612 3861 2.410730 CGTTACCGAAGTTTTGCTCGAT 59.589 45.455 0.00 0.00 35.63 3.59
3613 3862 1.788308 CGTTACCGAAGTTTTGCTCGA 59.212 47.619 0.00 0.00 35.63 4.04
3614 3863 1.788308 TCGTTACCGAAGTTTTGCTCG 59.212 47.619 0.00 0.00 40.86 5.03
3615 3864 3.054878 TCTCGTTACCGAAGTTTTGCTC 58.945 45.455 0.00 0.00 43.69 4.26
3616 3865 2.798847 GTCTCGTTACCGAAGTTTTGCT 59.201 45.455 0.00 0.00 43.69 3.91
3617 3866 2.409371 CGTCTCGTTACCGAAGTTTTGC 60.409 50.000 0.00 0.00 43.69 3.68
3618 3867 3.044986 TCGTCTCGTTACCGAAGTTTTG 58.955 45.455 0.00 0.00 43.69 2.44
3619 3868 3.303406 CTCGTCTCGTTACCGAAGTTTT 58.697 45.455 0.00 0.00 43.69 2.43
3620 3869 2.351157 CCTCGTCTCGTTACCGAAGTTT 60.351 50.000 0.00 0.00 43.69 2.66
3621 3870 1.198637 CCTCGTCTCGTTACCGAAGTT 59.801 52.381 0.00 0.00 43.69 2.66
3622 3871 0.801251 CCTCGTCTCGTTACCGAAGT 59.199 55.000 0.00 0.00 43.69 3.01
3623 3872 0.522915 GCCTCGTCTCGTTACCGAAG 60.523 60.000 0.00 0.00 43.69 3.79
3624 3873 1.503542 GCCTCGTCTCGTTACCGAA 59.496 57.895 0.00 0.00 43.69 4.30
3625 3874 2.401766 GGCCTCGTCTCGTTACCGA 61.402 63.158 0.00 0.00 41.73 4.69
3626 3875 2.101770 GGCCTCGTCTCGTTACCG 59.898 66.667 0.00 0.00 0.00 4.02
3627 3876 2.493501 GGGCCTCGTCTCGTTACC 59.506 66.667 0.84 0.00 0.00 2.85
3628 3877 1.926511 TTCGGGCCTCGTCTCGTTAC 61.927 60.000 0.84 0.00 40.32 2.50
3629 3878 1.651240 CTTCGGGCCTCGTCTCGTTA 61.651 60.000 0.84 0.00 40.32 3.18
3630 3879 2.987547 TTCGGGCCTCGTCTCGTT 60.988 61.111 0.84 0.00 40.32 3.85
3631 3880 3.441290 CTTCGGGCCTCGTCTCGT 61.441 66.667 0.84 0.00 40.32 4.18
3632 3881 2.209064 TTTCTTCGGGCCTCGTCTCG 62.209 60.000 0.84 0.00 40.32 4.04
3633 3882 0.037605 TTTTCTTCGGGCCTCGTCTC 60.038 55.000 0.84 0.00 40.32 3.36
3634 3883 0.037232 CTTTTCTTCGGGCCTCGTCT 60.037 55.000 0.84 0.00 40.32 4.18
3635 3884 1.019805 CCTTTTCTTCGGGCCTCGTC 61.020 60.000 0.84 0.00 40.32 4.20
3636 3885 1.003718 CCTTTTCTTCGGGCCTCGT 60.004 57.895 0.84 0.00 40.32 4.18
3637 3886 0.605589 AACCTTTTCTTCGGGCCTCG 60.606 55.000 0.84 4.76 40.90 4.63
3638 3887 0.881796 CAACCTTTTCTTCGGGCCTC 59.118 55.000 0.84 0.00 0.00 4.70
3639 3888 1.179174 GCAACCTTTTCTTCGGGCCT 61.179 55.000 0.84 0.00 0.00 5.19
3640 3889 1.289066 GCAACCTTTTCTTCGGGCC 59.711 57.895 0.00 0.00 0.00 5.80
3641 3890 1.081442 CGCAACCTTTTCTTCGGGC 60.081 57.895 0.00 0.00 0.00 6.13
3642 3891 1.081442 GCGCAACCTTTTCTTCGGG 60.081 57.895 0.30 0.00 0.00 5.14
3643 3892 1.081442 GGCGCAACCTTTTCTTCGG 60.081 57.895 10.83 0.00 34.51 4.30
3644 3893 1.081442 GGGCGCAACCTTTTCTTCG 60.081 57.895 10.83 0.00 39.10 3.79
3645 3894 0.039165 CTGGGCGCAACCTTTTCTTC 60.039 55.000 10.83 0.00 39.10 2.87
3646 3895 0.467290 TCTGGGCGCAACCTTTTCTT 60.467 50.000 10.83 0.00 39.10 2.52
3647 3896 0.251341 ATCTGGGCGCAACCTTTTCT 60.251 50.000 10.83 0.00 39.10 2.52
3648 3897 0.109132 CATCTGGGCGCAACCTTTTC 60.109 55.000 10.83 0.00 39.10 2.29
3649 3898 0.539438 TCATCTGGGCGCAACCTTTT 60.539 50.000 10.83 0.00 39.10 2.27
3650 3899 0.539438 TTCATCTGGGCGCAACCTTT 60.539 50.000 10.83 0.00 39.10 3.11
3651 3900 0.539438 TTTCATCTGGGCGCAACCTT 60.539 50.000 10.83 0.00 39.10 3.50
3652 3901 0.962356 CTTTCATCTGGGCGCAACCT 60.962 55.000 10.83 0.00 39.10 3.50
3653 3902 1.508088 CTTTCATCTGGGCGCAACC 59.492 57.895 10.83 1.84 37.93 3.77
3654 3903 1.244019 ACCTTTCATCTGGGCGCAAC 61.244 55.000 10.83 1.07 0.00 4.17
3655 3904 0.539438 AACCTTTCATCTGGGCGCAA 60.539 50.000 10.83 0.00 0.00 4.85
3656 3905 0.960364 GAACCTTTCATCTGGGCGCA 60.960 55.000 10.83 2.47 0.00 6.09
3657 3906 0.960364 TGAACCTTTCATCTGGGCGC 60.960 55.000 0.00 0.00 34.08 6.53
3658 3907 3.248043 TGAACCTTTCATCTGGGCG 57.752 52.632 0.00 0.00 34.08 6.13
3666 3915 3.753815 TGCTGTGATCATGAACCTTTCA 58.246 40.909 0.00 0.00 45.01 2.69
3667 3916 4.771590 TTGCTGTGATCATGAACCTTTC 57.228 40.909 0.00 0.00 0.00 2.62
3668 3917 4.142534 CGATTGCTGTGATCATGAACCTTT 60.143 41.667 0.00 0.00 0.00 3.11
3669 3918 3.376234 CGATTGCTGTGATCATGAACCTT 59.624 43.478 0.00 0.00 0.00 3.50
3670 3919 2.941064 CGATTGCTGTGATCATGAACCT 59.059 45.455 0.00 0.00 0.00 3.50
3671 3920 2.540361 GCGATTGCTGTGATCATGAACC 60.540 50.000 0.00 0.00 38.39 3.62
3672 3921 2.713011 GCGATTGCTGTGATCATGAAC 58.287 47.619 0.00 0.00 38.39 3.18
3673 3922 1.328374 CGCGATTGCTGTGATCATGAA 59.672 47.619 0.00 0.00 39.65 2.57
3674 3923 0.932399 CGCGATTGCTGTGATCATGA 59.068 50.000 0.00 0.00 39.65 3.07
3675 3924 0.041576 CCGCGATTGCTGTGATCATG 60.042 55.000 8.23 0.00 39.65 3.07
3676 3925 0.179076 TCCGCGATTGCTGTGATCAT 60.179 50.000 8.23 0.00 39.65 2.45
3677 3926 1.083806 GTCCGCGATTGCTGTGATCA 61.084 55.000 8.23 0.00 39.65 2.92
3678 3927 1.638467 GTCCGCGATTGCTGTGATC 59.362 57.895 8.23 0.00 39.65 2.92
3679 3928 2.167219 CGTCCGCGATTGCTGTGAT 61.167 57.895 8.23 0.00 41.33 3.06
3680 3929 2.809174 CGTCCGCGATTGCTGTGA 60.809 61.111 8.23 0.00 41.33 3.58
3681 3930 2.809174 TCGTCCGCGATTGCTGTG 60.809 61.111 8.23 0.00 42.81 3.66
3692 3941 4.444838 TCGGTTGGCCATCGTCCG 62.445 66.667 23.73 23.73 42.12 4.79
3693 3942 2.511600 CTCGGTTGGCCATCGTCC 60.512 66.667 22.69 14.93 34.09 4.79
3694 3943 2.100631 CACTCGGTTGGCCATCGTC 61.101 63.158 22.69 8.55 34.09 4.20
3695 3944 2.047274 CACTCGGTTGGCCATCGT 60.047 61.111 22.69 7.71 34.09 3.73
3696 3945 1.375396 TTCACTCGGTTGGCCATCG 60.375 57.895 19.20 19.20 34.09 3.84
3697 3946 1.305930 GGTTCACTCGGTTGGCCATC 61.306 60.000 6.09 5.53 34.09 3.51
3698 3947 1.303317 GGTTCACTCGGTTGGCCAT 60.303 57.895 6.09 0.00 34.09 4.40
3699 3948 2.112297 GGTTCACTCGGTTGGCCA 59.888 61.111 0.00 0.00 34.09 5.36
3700 3949 2.671963 GGGTTCACTCGGTTGGCC 60.672 66.667 0.00 0.00 0.00 5.36
3701 3950 3.047877 CGGGTTCACTCGGTTGGC 61.048 66.667 0.00 0.00 0.00 4.52
3702 3951 2.358247 CCGGGTTCACTCGGTTGG 60.358 66.667 10.31 0.00 41.23 3.77
3708 3957 4.754667 GGTCCGCCGGGTTCACTC 62.755 72.222 1.90 0.00 33.83 3.51
3710 3959 4.629523 TTGGTCCGCCGGGTTCAC 62.630 66.667 1.90 0.00 37.67 3.18
3711 3960 4.323477 CTTGGTCCGCCGGGTTCA 62.323 66.667 1.90 0.00 37.67 3.18
3715 3964 4.856801 CATCCTTGGTCCGCCGGG 62.857 72.222 1.90 0.00 37.67 5.73
3717 3966 4.776322 TGCATCCTTGGTCCGCCG 62.776 66.667 0.00 0.00 37.67 6.46
3718 3967 1.322538 AAATGCATCCTTGGTCCGCC 61.323 55.000 0.00 0.00 0.00 6.13
3719 3968 0.532115 AAAATGCATCCTTGGTCCGC 59.468 50.000 0.00 0.00 0.00 5.54
3720 3969 2.094675 AGAAAATGCATCCTTGGTCCG 58.905 47.619 0.00 0.00 0.00 4.79
3721 3970 3.515330 CAGAAAATGCATCCTTGGTCC 57.485 47.619 0.00 0.00 0.00 4.46
3733 3982 1.159285 TCCGCACTGAGCAGAAAATG 58.841 50.000 4.21 0.00 46.13 2.32
3734 3983 1.537202 GTTCCGCACTGAGCAGAAAAT 59.463 47.619 4.21 0.00 41.06 1.82
3735 3984 0.944386 GTTCCGCACTGAGCAGAAAA 59.056 50.000 4.21 0.00 41.06 2.29
3736 3985 0.106708 AGTTCCGCACTGAGCAGAAA 59.893 50.000 4.21 0.00 41.06 2.52
3737 3986 0.966179 TAGTTCCGCACTGAGCAGAA 59.034 50.000 4.21 0.00 46.13 3.02
3738 3987 1.186200 ATAGTTCCGCACTGAGCAGA 58.814 50.000 4.21 0.00 46.13 4.26
3739 3988 1.662629 CAATAGTTCCGCACTGAGCAG 59.337 52.381 0.00 0.00 46.13 4.24
3740 3989 1.001974 ACAATAGTTCCGCACTGAGCA 59.998 47.619 0.00 0.00 46.13 4.26
3741 3990 1.726853 ACAATAGTTCCGCACTGAGC 58.273 50.000 0.00 0.00 35.97 4.26
3742 3991 3.865745 CCTAACAATAGTTCCGCACTGAG 59.134 47.826 0.00 0.00 39.15 3.35
3743 3992 3.369052 CCCTAACAATAGTTCCGCACTGA 60.369 47.826 0.00 0.00 39.15 3.41
3744 3993 2.936498 CCCTAACAATAGTTCCGCACTG 59.064 50.000 0.00 0.00 39.15 3.66
3745 3994 2.835764 TCCCTAACAATAGTTCCGCACT 59.164 45.455 0.00 0.00 39.15 4.40
3746 3995 2.934553 GTCCCTAACAATAGTTCCGCAC 59.065 50.000 0.00 0.00 39.15 5.34
3747 3996 2.568062 TGTCCCTAACAATAGTTCCGCA 59.432 45.455 0.00 0.00 39.15 5.69
3748 3997 3.195661 CTGTCCCTAACAATAGTTCCGC 58.804 50.000 0.00 0.00 39.15 5.54
3749 3998 3.195661 GCTGTCCCTAACAATAGTTCCG 58.804 50.000 0.00 0.00 39.15 4.30
3750 3999 4.216411 TGCTGTCCCTAACAATAGTTCC 57.784 45.455 0.00 0.00 39.15 3.62
3751 4000 4.816925 GGATGCTGTCCCTAACAATAGTTC 59.183 45.833 0.00 0.00 41.50 3.01
3752 4001 4.781934 GGATGCTGTCCCTAACAATAGTT 58.218 43.478 0.00 0.00 41.50 2.24
3753 4002 4.423625 GGATGCTGTCCCTAACAATAGT 57.576 45.455 0.00 0.00 41.50 2.12
3765 4014 0.250209 ATGCTGATCGGGATGCTGTC 60.250 55.000 7.88 0.00 0.00 3.51
3766 4015 0.250209 GATGCTGATCGGGATGCTGT 60.250 55.000 13.96 0.00 0.00 4.40
3767 4016 0.954449 GGATGCTGATCGGGATGCTG 60.954 60.000 18.44 0.00 0.00 4.41
3768 4017 1.374190 GGATGCTGATCGGGATGCT 59.626 57.895 18.44 0.00 0.00 3.79
3769 4018 1.071987 TGGATGCTGATCGGGATGC 59.928 57.895 18.81 18.81 0.00 3.91
3770 4019 0.947660 CGTGGATGCTGATCGGGATG 60.948 60.000 13.96 0.00 0.00 3.51
3771 4020 1.368950 CGTGGATGCTGATCGGGAT 59.631 57.895 8.48 8.48 0.00 3.85
3772 4021 0.753848 TACGTGGATGCTGATCGGGA 60.754 55.000 3.14 0.00 0.00 5.14
3773 4022 0.318441 ATACGTGGATGCTGATCGGG 59.682 55.000 3.14 0.00 0.00 5.14
3774 4023 1.422388 CATACGTGGATGCTGATCGG 58.578 55.000 0.00 0.00 0.00 4.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.