Multiple sequence alignment - TraesCS6B01G034100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G034100 chr6B 100.000 9621 0 0 1 9621 20679043 20688663 0.000000e+00 17767.0
1 TraesCS6B01G034100 chr6D 96.020 8341 227 51 562 8811 10905377 10913703 0.000000e+00 13466.0
2 TraesCS6B01G034100 chr6D 89.982 559 42 12 1 556 10898209 10898756 0.000000e+00 710.0
3 TraesCS6B01G034100 chr6D 92.371 485 28 6 8334 8809 11050958 11051442 0.000000e+00 682.0
4 TraesCS6B01G034100 chr6D 88.719 523 42 12 8971 9486 10913780 10914292 2.950000e-174 623.0
5 TraesCS6B01G034100 chr6D 89.510 143 8 2 9388 9523 10435510 10435368 3.570000e-39 174.0
6 TraesCS6B01G034100 chr6D 89.286 84 7 2 7 90 162157256 162157175 4.750000e-18 104.0
7 TraesCS6B01G034100 chr6A 96.101 8232 230 37 637 8811 12385543 12393740 0.000000e+00 13339.0
8 TraesCS6B01G034100 chr6A 88.300 453 42 9 1 447 12381768 12382215 5.120000e-147 532.0
9 TraesCS6B01G034100 chr6A 96.753 154 4 1 8348 8500 12423284 12423437 1.240000e-63 255.0
10 TraesCS6B01G034100 chr6A 89.831 177 15 3 5171 5345 539421361 539421536 3.500000e-54 224.0
11 TraesCS6B01G034100 chr6A 92.553 94 3 2 445 538 12385030 12385119 2.180000e-26 132.0
12 TraesCS6B01G034100 chr7B 83.706 3713 558 32 4921 8617 119207256 119203575 0.000000e+00 3461.0
13 TraesCS6B01G034100 chr7B 83.995 3124 432 47 1001 4106 119211146 119208073 0.000000e+00 2937.0
14 TraesCS6B01G034100 chr7B 84.987 393 43 12 1 391 42857834 42858212 1.520000e-102 385.0
15 TraesCS6B01G034100 chr7A 83.630 3708 566 32 4923 8617 211709362 211705683 0.000000e+00 3446.0
16 TraesCS6B01G034100 chr7A 83.658 3133 444 43 1001 4106 211713491 211710400 0.000000e+00 2887.0
17 TraesCS6B01G034100 chr7D 83.518 3155 444 49 1001 4132 156800534 156797433 0.000000e+00 2876.0
18 TraesCS6B01G034100 chr7D 84.686 2403 319 27 4921 7309 156796597 156794230 0.000000e+00 2353.0
19 TraesCS6B01G034100 chr7D 96.970 33 1 0 5109 5141 476182218 476182186 1.000000e-03 56.5
20 TraesCS6B01G034100 chr5D 89.362 846 56 14 3316 4128 26259961 26260805 0.000000e+00 1033.0
21 TraesCS6B01G034100 chr5D 83.173 624 46 26 6427 7039 399609355 399608780 5.150000e-142 516.0
22 TraesCS6B01G034100 chr5D 93.333 150 8 1 7515 7664 399608745 399608598 4.520000e-53 220.0
23 TraesCS6B01G034100 chr5A 90.403 521 35 6 4130 4644 18057630 18058141 0.000000e+00 671.0
24 TraesCS6B01G034100 chr5A 86.667 300 22 5 5065 5346 128260533 128260234 5.610000e-82 316.0
25 TraesCS6B01G034100 chr5A 94.545 55 2 1 5446 5500 128260235 128260182 6.190000e-12 84.2
26 TraesCS6B01G034100 chr5A 92.453 53 1 1 5021 5070 128274469 128274417 1.340000e-08 73.1
27 TraesCS6B01G034100 chr5B 88.246 536 43 7 4104 4636 18332157 18332675 2.950000e-174 623.0
28 TraesCS6B01G034100 chr5B 82.697 393 33 16 3316 3674 18331769 18332160 5.610000e-82 316.0
29 TraesCS6B01G034100 chr3B 83.613 476 47 20 8888 9360 759476500 759476053 1.490000e-112 418.0
30 TraesCS6B01G034100 chr3B 81.061 396 47 21 1 391 228739769 228740141 3.400000e-74 291.0
31 TraesCS6B01G034100 chr3B 90.000 180 9 4 8639 8809 759476696 759476517 3.500000e-54 224.0
32 TraesCS6B01G034100 chr2B 79.656 349 40 9 73 395 223415407 223415064 1.260000e-53 222.0
33 TraesCS6B01G034100 chr2A 91.026 78 6 1 9200 9277 601718108 601718184 4.750000e-18 104.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G034100 chr6B 20679043 20688663 9620 False 17767.000000 17767 100.0000 1 9621 1 chr6B.!!$F1 9620
1 TraesCS6B01G034100 chr6D 10905377 10914292 8915 False 7044.500000 13466 92.3695 562 9486 2 chr6D.!!$F3 8924
2 TraesCS6B01G034100 chr6D 10898209 10898756 547 False 710.000000 710 89.9820 1 556 1 chr6D.!!$F1 555
3 TraesCS6B01G034100 chr6A 12381768 12393740 11972 False 4667.666667 13339 92.3180 1 8811 3 chr6A.!!$F3 8810
4 TraesCS6B01G034100 chr7B 119203575 119211146 7571 True 3199.000000 3461 83.8505 1001 8617 2 chr7B.!!$R1 7616
5 TraesCS6B01G034100 chr7A 211705683 211713491 7808 True 3166.500000 3446 83.6440 1001 8617 2 chr7A.!!$R1 7616
6 TraesCS6B01G034100 chr7D 156794230 156800534 6304 True 2614.500000 2876 84.1020 1001 7309 2 chr7D.!!$R2 6308
7 TraesCS6B01G034100 chr5D 26259961 26260805 844 False 1033.000000 1033 89.3620 3316 4128 1 chr5D.!!$F1 812
8 TraesCS6B01G034100 chr5D 399608598 399609355 757 True 368.000000 516 88.2530 6427 7664 2 chr5D.!!$R1 1237
9 TraesCS6B01G034100 chr5A 18057630 18058141 511 False 671.000000 671 90.4030 4130 4644 1 chr5A.!!$F1 514
10 TraesCS6B01G034100 chr5B 18331769 18332675 906 False 469.500000 623 85.4715 3316 4636 2 chr5B.!!$F1 1320
11 TraesCS6B01G034100 chr3B 759476053 759476696 643 True 321.000000 418 86.8065 8639 9360 2 chr3B.!!$R1 721

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
238 239 0.109132 GGCCATCCAAACAAGCTTCG 60.109 55.000 0.00 0.00 0.00 3.79 F
365 367 0.468029 GCCCGATCCAATTCCATGGT 60.468 55.000 12.58 0.00 41.46 3.55 F
1428 4682 0.609957 TCATCCAGCAGCAGTTTGGG 60.610 55.000 0.00 0.00 32.76 4.12 F
2197 5467 0.892755 TAGTCTGGTGTACCCGCTTG 59.107 55.000 0.00 0.00 35.15 4.01 F
2617 5887 4.982241 TGGAACTGGAGAGAAGATTGTT 57.018 40.909 0.00 0.00 0.00 2.83 F
3556 6854 1.830477 AGCAGTGATCTCAAGGACCTC 59.170 52.381 0.00 0.00 0.00 3.85 F
4151 7482 3.303351 AACCCCATCATCTTGGTGATC 57.697 47.619 0.00 0.00 36.72 2.92 F
4734 8448 3.586470 TGGGTATTTTGTGGTGACAGT 57.414 42.857 0.00 0.00 44.46 3.55 F
6436 10394 1.963338 AGGCGAAACTGCTGCTGAC 60.963 57.895 13.69 3.83 34.52 3.51 F
8095 12068 0.105964 TCCAACTCCCACACTTCACG 59.894 55.000 0.00 0.00 0.00 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1873 5140 0.798776 GGTTCAACTCAGCCACATCG 59.201 55.000 0.00 0.00 0.00 3.84 R
2197 5467 1.153005 CTGATCTTCAGCCCTGGCC 60.153 63.158 4.13 0.00 43.17 5.36 R
2554 5824 2.171237 TGGCACATGGACTTCCTCATAG 59.829 50.000 0.00 0.00 36.82 2.23 R
3550 6848 1.146263 CCCATACGGCAAGAGGTCC 59.854 63.158 0.00 0.00 0.00 4.46 R
4270 7658 0.871722 GAACACCGCAACATACAGCA 59.128 50.000 0.00 0.00 0.00 4.41 R
4677 8391 0.179070 GGATGAAGCCTCTTCGACCC 60.179 60.000 2.61 0.64 0.00 4.46 R
5559 9517 1.805428 GCGCAAGGGTGTTTGGACAT 61.805 55.000 0.30 0.00 36.39 3.06 R
6514 10472 0.535102 CTTGCTGGACAGGTTTCCGT 60.535 55.000 1.01 0.00 38.69 4.69 R
8152 12125 0.388294 TGCTCATCTCAGCCAGATCG 59.612 55.000 0.00 0.00 40.20 3.69 R
9493 13487 0.036732 TGGATATTGGGCGATCCAGC 59.963 55.000 0.00 0.00 45.37 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 6.860539 CCGTGTGATGTTGATACAAAATTTGA 59.139 34.615 13.19 0.00 37.91 2.69
41 42 7.541783 CCGTGTGATGTTGATACAAAATTTGAT 59.458 33.333 13.19 1.82 37.91 2.57
65 66 3.091545 TGGTCCCTTTTCATGCTTGATC 58.908 45.455 2.75 0.00 0.00 2.92
68 69 3.009723 TCCCTTTTCATGCTTGATCGAC 58.990 45.455 2.75 0.00 0.00 4.20
71 72 3.423571 CTTTTCATGCTTGATCGACTGC 58.576 45.455 2.75 0.00 0.00 4.40
76 77 1.812235 TGCTTGATCGACTGCACAAT 58.188 45.000 0.00 0.00 0.00 2.71
201 202 7.745022 ACAACATTCATATGAAAAATGAGCG 57.255 32.000 21.50 11.34 37.61 5.03
209 210 7.195646 TCATATGAAAAATGAGCGATTCCAAC 58.804 34.615 1.98 0.00 0.00 3.77
213 214 4.600012 AAAATGAGCGATTCCAACGTAG 57.400 40.909 0.00 0.00 0.00 3.51
238 239 0.109132 GGCCATCCAAACAAGCTTCG 60.109 55.000 0.00 0.00 0.00 3.79
239 240 0.881118 GCCATCCAAACAAGCTTCGA 59.119 50.000 0.00 0.00 0.00 3.71
241 242 2.669391 GCCATCCAAACAAGCTTCGAAG 60.669 50.000 21.02 21.02 0.00 3.79
253 254 1.337260 GCTTCGAAGTTGAGCCTCTCA 60.337 52.381 25.24 0.00 38.87 3.27
254 255 2.333014 CTTCGAAGTTGAGCCTCTCAC 58.667 52.381 17.24 0.00 40.46 3.51
285 286 3.044986 CCAAGTGTGAATTCTTTGCACG 58.955 45.455 7.05 0.00 35.37 5.34
295 296 3.398954 TTCTTTGCACGTCTGAACAAC 57.601 42.857 0.00 0.00 0.00 3.32
317 318 7.920682 ACAACAGAATTTAGGTTCAATGTCAAC 59.079 33.333 0.00 0.00 0.00 3.18
353 355 3.251972 GGAGATTTGAATTGAGCCCGATC 59.748 47.826 0.00 0.00 0.00 3.69
365 367 0.468029 GCCCGATCCAATTCCATGGT 60.468 55.000 12.58 0.00 41.46 3.55
391 397 7.884877 TCTTGAATATCAACATCCAAACAGAGT 59.115 33.333 0.00 0.00 32.21 3.24
414 420 8.171164 AGTATATGATCTATTGCGCTGCTATA 57.829 34.615 9.73 0.55 0.00 1.31
416 422 3.501950 TGATCTATTGCGCTGCTATACG 58.498 45.455 9.73 0.00 0.00 3.06
443 449 6.042638 TGTTTGACCATTTTTCTTTGTCCA 57.957 33.333 0.00 0.00 0.00 4.02
474 3297 7.255625 GCACTGGTGATCTTATATGACTAGACA 60.256 40.741 4.79 0.00 0.00 3.41
598 3753 2.345617 TCGAGGCCGAATGCAACA 59.654 55.556 0.00 0.00 42.51 3.33
686 3878 4.402192 CGATCTGCGTCGGTTCAT 57.598 55.556 0.00 0.00 37.94 2.57
687 3879 2.665777 CGATCTGCGTCGGTTCATT 58.334 52.632 0.00 0.00 37.94 2.57
689 3881 0.931005 GATCTGCGTCGGTTCATTCC 59.069 55.000 0.00 0.00 0.00 3.01
973 4218 3.522731 CTGACCGCTCCTCCTCCG 61.523 72.222 0.00 0.00 0.00 4.63
1365 4619 0.662374 ACGACGTTGTCTACAAGCCG 60.662 55.000 1.48 0.38 36.39 5.52
1425 4679 1.580845 GCGTCATCCAGCAGCAGTTT 61.581 55.000 0.00 0.00 0.00 2.66
1428 4682 0.609957 TCATCCAGCAGCAGTTTGGG 60.610 55.000 0.00 0.00 32.76 4.12
1593 4847 1.918262 TCCATTGGGAAGCTCATCACT 59.082 47.619 2.09 0.00 41.32 3.41
1611 4868 1.003580 ACTGATTTCCATGACGCCAGT 59.996 47.619 0.00 0.00 0.00 4.00
1668 4934 2.862536 CGCGACCATGGATGATGATATC 59.137 50.000 21.47 0.35 33.31 1.63
1816 5083 6.866010 ATACCATATGTATGCTTGTGTGTG 57.134 37.500 1.24 0.00 38.75 3.82
1837 5104 4.744631 GTGTAACCTTCATTGTTTTGCCTG 59.255 41.667 0.00 0.00 0.00 4.85
1873 5140 6.289834 AGATGACTTGGATGAAGATGATGAC 58.710 40.000 0.00 0.00 35.42 3.06
1927 5197 4.778143 ATGGGCGGCGAGTTGGAC 62.778 66.667 12.98 0.00 0.00 4.02
2197 5467 0.892755 TAGTCTGGTGTACCCGCTTG 59.107 55.000 0.00 0.00 35.15 4.01
2617 5887 4.982241 TGGAACTGGAGAGAAGATTGTT 57.018 40.909 0.00 0.00 0.00 2.83
3547 6845 7.065563 ACAGATATTGTCAAAAGCAGTGATCTC 59.934 37.037 0.00 0.00 33.87 2.75
3550 6848 5.428496 TTGTCAAAAGCAGTGATCTCAAG 57.572 39.130 0.00 0.00 0.00 3.02
3556 6854 1.830477 AGCAGTGATCTCAAGGACCTC 59.170 52.381 0.00 0.00 0.00 3.85
4109 7434 5.235186 GCTGACTTGGTAAGTACATGCTATG 59.765 44.000 0.00 0.00 43.03 2.23
4151 7482 3.303351 AACCCCATCATCTTGGTGATC 57.697 47.619 0.00 0.00 36.72 2.92
4415 7805 8.893727 GTCTTAGTATTGTTTATGCCAGATGTT 58.106 33.333 0.00 0.00 0.00 2.71
4441 7831 4.984161 GCAGTTGCACATTTTGTAGATTGT 59.016 37.500 0.00 0.00 41.59 2.71
4639 8353 6.636850 GGATATTTGTTGTAATAAAGCAGGCG 59.363 38.462 0.00 0.00 0.00 5.52
4677 8391 8.900983 TGGTTTTTAGAATTGGGAAAAATGAG 57.099 30.769 5.32 0.00 35.26 2.90
4681 8395 6.850752 TTAGAATTGGGAAAAATGAGGGTC 57.149 37.500 0.00 0.00 0.00 4.46
4731 8445 4.767928 TGGTATTGGGTATTTTGTGGTGAC 59.232 41.667 0.00 0.00 0.00 3.67
4734 8448 3.586470 TGGGTATTTTGTGGTGACAGT 57.414 42.857 0.00 0.00 44.46 3.55
4827 8702 7.265599 TCTTGATACTGGTCCCAAATCTTAA 57.734 36.000 8.83 0.00 0.00 1.85
4860 8737 5.122396 CCAGAGAAACATAGTTGGCAGTTAC 59.878 44.000 0.00 0.00 0.00 2.50
4904 8781 8.804912 AATATTGTTCTTCAGATGCTCTCTTT 57.195 30.769 0.00 0.00 29.16 2.52
5404 9357 3.772932 TGAACTTTGAACTGCTTGCTTG 58.227 40.909 0.00 0.00 0.00 4.01
5559 9517 6.598503 AGATGATTGATAAGCAGATGTGGAA 58.401 36.000 0.00 0.00 0.00 3.53
6436 10394 1.963338 AGGCGAAACTGCTGCTGAC 60.963 57.895 13.69 3.83 34.52 3.51
6514 10472 2.668185 TTTCTCGCCGGTGGAAGCAA 62.668 55.000 16.49 0.00 0.00 3.91
6607 10565 9.181512 GGACATGTCCTGGAAATAGTTGTTTCC 62.182 44.444 33.47 12.01 46.13 3.13
6973 10940 0.396811 CACCGTTCCTTCTTGGGTCT 59.603 55.000 0.00 0.00 36.20 3.85
7036 11009 4.336532 AACGCTTAAAAATACGCTGAGG 57.663 40.909 0.00 0.00 0.00 3.86
7285 11258 1.742071 GCTAGCAGGCCTCTTCAAGAC 60.742 57.143 10.63 0.00 0.00 3.01
7426 11399 1.164041 CCGAGGTTGTTGTGGGTGTC 61.164 60.000 0.00 0.00 0.00 3.67
7459 11432 4.399004 ACAAGATGCAGTGGACTATCTC 57.601 45.455 0.00 0.00 0.00 2.75
7837 11810 5.997746 TCACCAGAGGTTTTCTATTGACAAG 59.002 40.000 0.00 0.00 33.83 3.16
7867 11840 1.718757 GCGATCCACATGTCAAGGCC 61.719 60.000 0.00 0.00 0.00 5.19
7969 11942 2.280660 CATAGGCTGCTCCTGGCG 60.281 66.667 0.00 0.00 46.98 5.69
7993 11966 2.615912 GGTTGATGTTATCTCCAGCAGC 59.384 50.000 0.00 0.00 28.87 5.25
8044 12017 1.812922 GCTGAGCCAGATGGTGACG 60.813 63.158 6.40 0.00 37.57 4.35
8065 12038 0.392998 AAGGCATGTGGGATCGTGAC 60.393 55.000 0.00 0.00 32.94 3.67
8095 12068 0.105964 TCCAACTCCCACACTTCACG 59.894 55.000 0.00 0.00 0.00 4.35
8192 12165 1.826024 GATGAGATGCGGGACCTGT 59.174 57.895 1.33 0.00 0.00 4.00
8221 12194 1.627329 TCAAACTCTGAGCTGCAGGAT 59.373 47.619 17.12 0.00 44.98 3.24
8229 12202 2.125912 GCTGCAGGATGTCGTCGT 60.126 61.111 17.12 0.00 39.31 4.34
8263 12236 1.183030 TCCCCAACGTCGACATGACT 61.183 55.000 17.16 0.00 45.87 3.41
8266 12239 1.990563 CCCAACGTCGACATGACTTAC 59.009 52.381 17.16 0.00 45.87 2.34
8269 12242 2.522372 ACGTCGACATGACTTACGAG 57.478 50.000 17.16 0.00 45.87 4.18
8275 12248 0.172803 ACATGACTTACGAGGTCCGC 59.827 55.000 0.00 0.00 43.32 5.54
8332 12305 2.125753 CAGGTGACTCTGGAGCGC 60.126 66.667 0.00 0.00 40.21 5.92
8356 12329 1.603739 GACCAACCTGCCCAACTCC 60.604 63.158 0.00 0.00 0.00 3.85
8591 12564 1.254026 CCAGGAGTACGAGTTCACCA 58.746 55.000 0.00 0.00 0.00 4.17
8625 12598 2.024176 GCTGGAGGCGACTAATTTCA 57.976 50.000 0.00 0.00 44.43 2.69
8632 12605 2.817844 AGGCGACTAATTTCAAACACCC 59.182 45.455 0.00 0.00 40.61 4.61
8634 12607 3.004944 GGCGACTAATTTCAAACACCCAA 59.995 43.478 0.00 0.00 0.00 4.12
8672 12648 5.705905 ACTGGGTTTTTGCTCTTATGTAGAC 59.294 40.000 0.00 0.00 0.00 2.59
8689 12665 9.996554 TTATGTAGACAATATTATGTGACCTGG 57.003 33.333 0.00 0.00 32.57 4.45
8697 12673 9.561069 ACAATATTATGTGACCTGGAACTTATC 57.439 33.333 0.00 0.00 30.82 1.75
8701 12677 5.965033 ATGTGACCTGGAACTTATCATCT 57.035 39.130 0.00 0.00 0.00 2.90
8703 12679 6.126863 TGTGACCTGGAACTTATCATCTTT 57.873 37.500 0.00 0.00 0.00 2.52
8750 12738 7.801716 AGTTTAGCTTTGATTCAGTGTAACA 57.198 32.000 0.00 0.00 41.43 2.41
8786 12774 4.912766 ACGTTATTGTGTTTTTGTATGGCG 59.087 37.500 0.00 0.00 0.00 5.69
8800 12788 0.110678 ATGGCGACGAGGAGGATCTA 59.889 55.000 0.00 0.00 33.73 1.98
8805 12793 2.806019 GCGACGAGGAGGATCTACACTA 60.806 54.545 0.00 0.00 33.73 2.74
8811 12799 2.952978 AGGAGGATCTACACTAGTTGCG 59.047 50.000 0.00 0.00 33.73 4.85
8813 12801 2.688958 GAGGATCTACACTAGTTGCGGT 59.311 50.000 0.00 0.00 0.00 5.68
8815 12803 3.514309 AGGATCTACACTAGTTGCGGTTT 59.486 43.478 0.00 0.00 0.00 3.27
8816 12804 3.617263 GGATCTACACTAGTTGCGGTTTG 59.383 47.826 0.00 0.00 0.00 2.93
8817 12805 2.409975 TCTACACTAGTTGCGGTTTGC 58.590 47.619 0.00 0.00 46.70 3.68
8838 12826 4.690184 CACTTATGCATCTGTTTCAGCA 57.310 40.909 0.19 0.00 41.73 4.41
8839 12827 4.409570 CACTTATGCATCTGTTTCAGCAC 58.590 43.478 0.19 0.00 40.14 4.40
8840 12828 3.441572 ACTTATGCATCTGTTTCAGCACC 59.558 43.478 0.19 0.00 40.14 5.01
8841 12829 2.211250 ATGCATCTGTTTCAGCACCT 57.789 45.000 0.00 0.00 40.14 4.00
8842 12830 1.985473 TGCATCTGTTTCAGCACCTT 58.015 45.000 0.00 0.00 31.05 3.50
8843 12831 2.309613 TGCATCTGTTTCAGCACCTTT 58.690 42.857 0.00 0.00 31.05 3.11
8844 12832 2.294233 TGCATCTGTTTCAGCACCTTTC 59.706 45.455 0.00 0.00 31.05 2.62
8845 12833 2.555757 GCATCTGTTTCAGCACCTTTCT 59.444 45.455 0.00 0.00 0.00 2.52
8846 12834 3.005155 GCATCTGTTTCAGCACCTTTCTT 59.995 43.478 0.00 0.00 0.00 2.52
8847 12835 4.500375 GCATCTGTTTCAGCACCTTTCTTT 60.500 41.667 0.00 0.00 0.00 2.52
8848 12836 4.900635 TCTGTTTCAGCACCTTTCTTTC 57.099 40.909 0.00 0.00 0.00 2.62
8849 12837 3.632145 TCTGTTTCAGCACCTTTCTTTCC 59.368 43.478 0.00 0.00 0.00 3.13
8850 12838 2.693074 TGTTTCAGCACCTTTCTTTCCC 59.307 45.455 0.00 0.00 0.00 3.97
8851 12839 2.959030 GTTTCAGCACCTTTCTTTCCCT 59.041 45.455 0.00 0.00 0.00 4.20
8852 12840 2.276732 TCAGCACCTTTCTTTCCCTG 57.723 50.000 0.00 0.00 0.00 4.45
8853 12841 1.774254 TCAGCACCTTTCTTTCCCTGA 59.226 47.619 0.00 0.00 0.00 3.86
8854 12842 2.376518 TCAGCACCTTTCTTTCCCTGAT 59.623 45.455 0.00 0.00 0.00 2.90
8855 12843 2.490903 CAGCACCTTTCTTTCCCTGATG 59.509 50.000 0.00 0.00 0.00 3.07
8856 12844 2.376518 AGCACCTTTCTTTCCCTGATGA 59.623 45.455 0.00 0.00 0.00 2.92
8857 12845 3.011032 AGCACCTTTCTTTCCCTGATGAT 59.989 43.478 0.00 0.00 0.00 2.45
8858 12846 3.129988 GCACCTTTCTTTCCCTGATGATG 59.870 47.826 0.00 0.00 0.00 3.07
8859 12847 3.698040 CACCTTTCTTTCCCTGATGATGG 59.302 47.826 0.00 0.00 0.00 3.51
8860 12848 3.334881 ACCTTTCTTTCCCTGATGATGGT 59.665 43.478 0.00 0.00 0.00 3.55
8861 12849 4.202716 ACCTTTCTTTCCCTGATGATGGTT 60.203 41.667 0.00 0.00 0.00 3.67
8862 12850 4.774200 CCTTTCTTTCCCTGATGATGGTTT 59.226 41.667 0.00 0.00 0.00 3.27
8863 12851 5.337009 CCTTTCTTTCCCTGATGATGGTTTG 60.337 44.000 0.00 0.00 0.00 2.93
8864 12852 3.091545 TCTTTCCCTGATGATGGTTTGC 58.908 45.455 0.00 0.00 0.00 3.68
8865 12853 2.905415 TTCCCTGATGATGGTTTGCT 57.095 45.000 0.00 0.00 0.00 3.91
8866 12854 2.133281 TCCCTGATGATGGTTTGCTG 57.867 50.000 0.00 0.00 0.00 4.41
8867 12855 1.634973 TCCCTGATGATGGTTTGCTGA 59.365 47.619 0.00 0.00 0.00 4.26
8868 12856 2.242965 TCCCTGATGATGGTTTGCTGAT 59.757 45.455 0.00 0.00 0.00 2.90
8869 12857 2.361119 CCCTGATGATGGTTTGCTGATG 59.639 50.000 0.00 0.00 0.00 3.07
8870 12858 3.284617 CCTGATGATGGTTTGCTGATGA 58.715 45.455 0.00 0.00 0.00 2.92
8871 12859 3.315470 CCTGATGATGGTTTGCTGATGAG 59.685 47.826 0.00 0.00 0.00 2.90
8872 12860 3.945921 CTGATGATGGTTTGCTGATGAGT 59.054 43.478 0.00 0.00 0.00 3.41
8873 12861 5.101648 TGATGATGGTTTGCTGATGAGTA 57.898 39.130 0.00 0.00 0.00 2.59
8874 12862 5.687780 TGATGATGGTTTGCTGATGAGTAT 58.312 37.500 0.00 0.00 0.00 2.12
8875 12863 5.761726 TGATGATGGTTTGCTGATGAGTATC 59.238 40.000 0.00 0.00 0.00 2.24
8876 12864 4.454678 TGATGGTTTGCTGATGAGTATCC 58.545 43.478 0.00 0.00 32.09 2.59
8877 12865 3.998913 TGGTTTGCTGATGAGTATCCA 57.001 42.857 0.00 0.00 32.09 3.41
8878 12866 4.508551 TGGTTTGCTGATGAGTATCCAT 57.491 40.909 0.00 0.00 32.09 3.41
8883 12871 6.261118 GTTTGCTGATGAGTATCCATTGTTC 58.739 40.000 0.00 0.00 32.09 3.18
8885 12873 5.748402 TGCTGATGAGTATCCATTGTTCTT 58.252 37.500 0.00 0.00 32.09 2.52
8886 12874 5.587443 TGCTGATGAGTATCCATTGTTCTTG 59.413 40.000 0.00 0.00 32.09 3.02
8899 12887 8.044060 TCCATTGTTCTTGTGATGTTCTTATC 57.956 34.615 0.00 0.00 0.00 1.75
8911 12899 9.942850 TGTGATGTTCTTATCTGATGTTTCTTA 57.057 29.630 0.00 0.00 0.00 2.10
8950 12939 0.109319 GGCAACAATTACCGCAGTGG 60.109 55.000 0.00 0.00 46.41 4.00
8967 12956 6.223852 CGCAGTGGTGATAATAGGATTAAGT 58.776 40.000 0.00 0.00 0.00 2.24
8969 12958 7.095607 CGCAGTGGTGATAATAGGATTAAGTTC 60.096 40.741 0.00 0.00 0.00 3.01
8972 12961 8.993424 AGTGGTGATAATAGGATTAAGTTCAGT 58.007 33.333 0.00 0.00 0.00 3.41
9025 13014 7.891712 TGCCAGTGAATATATGAAATGATCCAT 59.108 33.333 0.00 0.00 0.00 3.41
9043 13033 3.010027 TCCATAAGGCATTTGTCTCACCA 59.990 43.478 0.00 0.00 33.74 4.17
9090 13080 8.511604 AGTAGAATGATTGTAGATTGGTTTGG 57.488 34.615 0.00 0.00 0.00 3.28
9091 13081 8.109634 AGTAGAATGATTGTAGATTGGTTTGGT 58.890 33.333 0.00 0.00 0.00 3.67
9093 13083 8.877864 AGAATGATTGTAGATTGGTTTGGTTA 57.122 30.769 0.00 0.00 0.00 2.85
9094 13084 9.308000 AGAATGATTGTAGATTGGTTTGGTTAA 57.692 29.630 0.00 0.00 0.00 2.01
9095 13085 9.573133 GAATGATTGTAGATTGGTTTGGTTAAG 57.427 33.333 0.00 0.00 0.00 1.85
9098 13088 9.226606 TGATTGTAGATTGGTTTGGTTAAGTAG 57.773 33.333 0.00 0.00 0.00 2.57
9102 13094 9.802039 TGTAGATTGGTTTGGTTAAGTAGAAAT 57.198 29.630 0.00 0.00 0.00 2.17
9134 13126 9.750125 GATTTTTAGAAGTTTATGCCCCAATAG 57.250 33.333 0.00 0.00 0.00 1.73
9139 13131 5.418840 AGAAGTTTATGCCCCAATAGTTGTG 59.581 40.000 0.00 0.00 0.00 3.33
9148 13140 3.244044 CCCCAATAGTTGTGGTTTTGTGG 60.244 47.826 0.00 0.00 34.01 4.17
9167 13159 2.104792 TGGTGTTCACTCTTCTCCTTGG 59.895 50.000 2.98 0.00 0.00 3.61
9168 13160 2.104963 GGTGTTCACTCTTCTCCTTGGT 59.895 50.000 2.98 0.00 0.00 3.67
9169 13161 3.134458 GTGTTCACTCTTCTCCTTGGTG 58.866 50.000 0.00 0.00 0.00 4.17
9177 13169 5.300286 CACTCTTCTCCTTGGTGTCAATTTT 59.700 40.000 0.00 0.00 31.75 1.82
9189 13181 2.554893 TGTCAATTTTAAGTGCCGACCC 59.445 45.455 0.00 0.00 0.00 4.46
9190 13182 1.807742 TCAATTTTAAGTGCCGACCCG 59.192 47.619 0.00 0.00 0.00 5.28
9201 13193 2.648593 CCGACCCGGTTCCAAATTT 58.351 52.632 0.00 0.00 42.73 1.82
9202 13194 1.823797 CCGACCCGGTTCCAAATTTA 58.176 50.000 0.00 0.00 42.73 1.40
9242 13235 7.775397 GCAAAAGATTTGCCACATGTATTAT 57.225 32.000 15.12 0.00 39.38 1.28
9280 13273 3.383505 AGTGTTTTTGTTACAAGCCTCCC 59.616 43.478 0.00 0.00 0.00 4.30
9289 13283 4.142049 TGTTACAAGCCTCCCTTTTGTTTG 60.142 41.667 0.00 0.00 36.52 2.93
9314 13308 6.127451 GGGTTGTAATTAGTTTTCATGGGGAG 60.127 42.308 0.00 0.00 0.00 4.30
9326 13320 6.964807 TTTCATGGGGAGTGATGATAAATG 57.035 37.500 0.00 0.00 0.00 2.32
9418 13412 5.697473 TTTTTCATGCCGAGTACATTTCA 57.303 34.783 0.00 0.00 0.00 2.69
9430 13424 8.178964 GCCGAGTACATTTCACATTTATGTTTA 58.821 33.333 0.00 0.00 39.39 2.01
9440 13434 6.098679 TCACATTTATGTTTACTGCCAATGC 58.901 36.000 0.00 0.00 39.39 3.56
9450 13444 2.751436 GCCAATGCGAGCCCTTCA 60.751 61.111 0.00 0.00 0.00 3.02
9453 13447 1.660560 CCAATGCGAGCCCTTCAAGG 61.661 60.000 0.00 0.00 34.30 3.61
9469 13463 6.322201 CCCTTCAAGGCAATGTTAGATAATGT 59.678 38.462 0.00 0.00 32.73 2.71
9479 13473 8.918658 GCAATGTTAGATAATGTAAATGCATGG 58.081 33.333 0.00 0.00 0.00 3.66
9487 13481 9.865321 AGATAATGTAAATGCATGGCAATTATC 57.135 29.630 22.69 22.69 43.62 1.75
9488 13482 9.642327 GATAATGTAAATGCATGGCAATTATCA 57.358 29.630 23.89 12.01 43.62 2.15
9490 13484 8.911918 AATGTAAATGCATGGCAATTATCATT 57.088 26.923 0.00 14.17 43.62 2.57
9491 13485 8.911918 ATGTAAATGCATGGCAATTATCATTT 57.088 26.923 0.00 14.97 43.62 2.32
9492 13486 8.734218 TGTAAATGCATGGCAATTATCATTTT 57.266 26.923 0.00 0.00 43.62 1.82
9493 13487 8.613482 TGTAAATGCATGGCAATTATCATTTTG 58.387 29.630 0.00 0.00 43.62 2.44
9494 13488 5.682943 ATGCATGGCAATTATCATTTTGC 57.317 34.783 0.00 0.00 43.62 3.68
9495 13489 4.771903 TGCATGGCAATTATCATTTTGCT 58.228 34.783 7.48 0.00 45.81 3.91
9496 13490 4.572795 TGCATGGCAATTATCATTTTGCTG 59.427 37.500 7.48 1.13 45.81 4.41
9497 13491 4.024387 GCATGGCAATTATCATTTTGCTGG 60.024 41.667 7.48 0.19 45.81 4.85
9498 13492 5.361427 CATGGCAATTATCATTTTGCTGGA 58.639 37.500 7.48 0.00 45.81 3.86
9499 13493 5.617528 TGGCAATTATCATTTTGCTGGAT 57.382 34.783 7.48 0.00 45.81 3.41
9500 13494 5.603596 TGGCAATTATCATTTTGCTGGATC 58.396 37.500 7.48 0.00 45.81 3.36
9501 13495 4.682860 GGCAATTATCATTTTGCTGGATCG 59.317 41.667 7.48 0.00 45.81 3.69
9502 13496 4.149396 GCAATTATCATTTTGCTGGATCGC 59.851 41.667 0.64 0.00 43.75 4.58
9503 13497 3.988379 TTATCATTTTGCTGGATCGCC 57.012 42.857 0.00 0.00 0.00 5.54
9504 13498 1.035139 ATCATTTTGCTGGATCGCCC 58.965 50.000 0.00 0.00 0.00 6.13
9505 13499 0.323269 TCATTTTGCTGGATCGCCCA 60.323 50.000 0.00 0.00 44.25 5.36
9506 13500 0.531657 CATTTTGCTGGATCGCCCAA 59.468 50.000 0.00 0.00 46.07 4.12
9507 13501 1.137479 CATTTTGCTGGATCGCCCAAT 59.863 47.619 0.00 0.00 46.07 3.16
9508 13502 2.136298 TTTTGCTGGATCGCCCAATA 57.864 45.000 0.00 0.00 46.07 1.90
9509 13503 2.363306 TTTGCTGGATCGCCCAATAT 57.637 45.000 0.00 0.00 46.07 1.28
9510 13504 1.896220 TTGCTGGATCGCCCAATATC 58.104 50.000 0.00 0.00 46.07 1.63
9511 13505 0.036732 TGCTGGATCGCCCAATATCC 59.963 55.000 0.00 0.00 46.07 2.59
9515 13509 3.912496 TGGATCGCCCAATATCCATAG 57.088 47.619 0.00 0.00 45.28 2.23
9516 13510 3.449918 TGGATCGCCCAATATCCATAGA 58.550 45.455 0.00 0.00 45.28 1.98
9517 13511 3.197766 TGGATCGCCCAATATCCATAGAC 59.802 47.826 0.00 0.00 45.28 2.59
9518 13512 3.197766 GGATCGCCCAATATCCATAGACA 59.802 47.826 0.00 0.00 41.21 3.41
9519 13513 3.678056 TCGCCCAATATCCATAGACAC 57.322 47.619 0.00 0.00 0.00 3.67
9520 13514 2.969262 TCGCCCAATATCCATAGACACA 59.031 45.455 0.00 0.00 0.00 3.72
9521 13515 3.067106 CGCCCAATATCCATAGACACAC 58.933 50.000 0.00 0.00 0.00 3.82
9522 13516 3.412386 GCCCAATATCCATAGACACACC 58.588 50.000 0.00 0.00 0.00 4.16
9523 13517 3.181445 GCCCAATATCCATAGACACACCA 60.181 47.826 0.00 0.00 0.00 4.17
9524 13518 4.688597 GCCCAATATCCATAGACACACCAA 60.689 45.833 0.00 0.00 0.00 3.67
9525 13519 4.821805 CCCAATATCCATAGACACACCAAC 59.178 45.833 0.00 0.00 0.00 3.77
9526 13520 5.397899 CCCAATATCCATAGACACACCAACT 60.398 44.000 0.00 0.00 0.00 3.16
9527 13521 6.183361 CCCAATATCCATAGACACACCAACTA 60.183 42.308 0.00 0.00 0.00 2.24
9528 13522 7.453393 CCAATATCCATAGACACACCAACTAT 58.547 38.462 0.00 0.00 0.00 2.12
9529 13523 8.593679 CCAATATCCATAGACACACCAACTATA 58.406 37.037 0.00 0.00 0.00 1.31
9530 13524 9.424319 CAATATCCATAGACACACCAACTATAC 57.576 37.037 0.00 0.00 0.00 1.47
9531 13525 5.864418 TCCATAGACACACCAACTATACC 57.136 43.478 0.00 0.00 0.00 2.73
9532 13526 4.340097 TCCATAGACACACCAACTATACCG 59.660 45.833 0.00 0.00 0.00 4.02
9533 13527 2.667473 AGACACACCAACTATACCGC 57.333 50.000 0.00 0.00 0.00 5.68
9534 13528 1.135199 AGACACACCAACTATACCGCG 60.135 52.381 0.00 0.00 0.00 6.46
9535 13529 0.889994 ACACACCAACTATACCGCGA 59.110 50.000 8.23 0.00 0.00 5.87
9536 13530 1.274596 CACACCAACTATACCGCGAC 58.725 55.000 8.23 0.00 0.00 5.19
9537 13531 0.179156 ACACCAACTATACCGCGACG 60.179 55.000 8.23 0.00 0.00 5.12
9550 13544 1.060713 CGCGACGGATATTGATCACC 58.939 55.000 0.00 0.00 33.27 4.02
9555 13549 1.795768 CGGATATTGATCACCGGTGG 58.204 55.000 33.40 15.70 41.41 4.61
9556 13550 1.343142 CGGATATTGATCACCGGTGGA 59.657 52.381 33.40 20.43 41.41 4.02
9557 13551 2.028112 CGGATATTGATCACCGGTGGAT 60.028 50.000 33.40 23.95 41.41 3.41
9558 13552 3.600388 GGATATTGATCACCGGTGGATC 58.400 50.000 33.40 29.38 41.20 3.36
9559 13553 3.600388 GATATTGATCACCGGTGGATCC 58.400 50.000 33.40 19.40 40.32 3.36
9560 13554 1.212375 ATTGATCACCGGTGGATCCA 58.788 50.000 33.40 23.62 40.32 3.41
9561 13555 1.212375 TTGATCACCGGTGGATCCAT 58.788 50.000 33.40 19.54 40.32 3.41
9562 13556 0.758734 TGATCACCGGTGGATCCATC 59.241 55.000 33.40 26.20 40.32 3.51
9563 13557 0.758734 GATCACCGGTGGATCCATCA 59.241 55.000 33.40 12.86 36.09 3.07
9564 13558 1.140852 GATCACCGGTGGATCCATCAA 59.859 52.381 33.40 12.08 36.09 2.57
9565 13559 0.988063 TCACCGGTGGATCCATCAAA 59.012 50.000 33.40 8.03 35.57 2.69
9566 13560 1.352687 TCACCGGTGGATCCATCAAAA 59.647 47.619 33.40 7.46 35.57 2.44
9567 13561 2.025416 TCACCGGTGGATCCATCAAAAT 60.025 45.455 33.40 3.72 35.57 1.82
9568 13562 2.760092 CACCGGTGGATCCATCAAAATT 59.240 45.455 27.57 0.54 35.57 1.82
9569 13563 3.195396 CACCGGTGGATCCATCAAAATTT 59.805 43.478 27.57 0.00 35.57 1.82
9570 13564 3.837731 ACCGGTGGATCCATCAAAATTTT 59.162 39.130 24.71 0.00 35.57 1.82
9571 13565 4.285775 ACCGGTGGATCCATCAAAATTTTT 59.714 37.500 24.71 0.00 35.57 1.94
9572 13566 4.630940 CCGGTGGATCCATCAAAATTTTTG 59.369 41.667 24.71 14.41 35.57 2.44
9573 13567 5.237048 CGGTGGATCCATCAAAATTTTTGT 58.763 37.500 24.71 6.48 35.57 2.83
9574 13568 5.700373 CGGTGGATCCATCAAAATTTTTGTT 59.300 36.000 24.71 9.99 35.57 2.83
9575 13569 6.347563 CGGTGGATCCATCAAAATTTTTGTTG 60.348 38.462 24.71 19.03 35.57 3.33
9576 13570 6.486320 GGTGGATCCATCAAAATTTTTGTTGT 59.514 34.615 20.69 11.46 35.97 3.32
9577 13571 7.354257 GTGGATCCATCAAAATTTTTGTTGTG 58.646 34.615 19.62 17.48 0.00 3.33
9578 13572 7.012232 GTGGATCCATCAAAATTTTTGTTGTGT 59.988 33.333 19.62 14.59 0.00 3.72
9579 13573 7.012138 TGGATCCATCAAAATTTTTGTTGTGTG 59.988 33.333 22.25 12.89 0.00 3.82
9580 13574 7.226325 GGATCCATCAAAATTTTTGTTGTGTGA 59.774 33.333 22.25 16.12 0.00 3.58
9581 13575 7.912056 TCCATCAAAATTTTTGTTGTGTGAA 57.088 28.000 22.25 5.54 0.00 3.18
9582 13576 8.503458 TCCATCAAAATTTTTGTTGTGTGAAT 57.497 26.923 22.25 7.16 0.00 2.57
9583 13577 8.396390 TCCATCAAAATTTTTGTTGTGTGAATG 58.604 29.630 22.25 15.27 0.00 2.67
9584 13578 8.182881 CCATCAAAATTTTTGTTGTGTGAATGT 58.817 29.630 22.25 0.00 0.00 2.71
9585 13579 9.001049 CATCAAAATTTTTGTTGTGTGAATGTG 57.999 29.630 18.69 0.00 0.00 3.21
9586 13580 8.092521 TCAAAATTTTTGTTGTGTGAATGTGT 57.907 26.923 18.69 0.00 0.00 3.72
9587 13581 8.226448 TCAAAATTTTTGTTGTGTGAATGTGTC 58.774 29.630 18.69 0.00 0.00 3.67
9588 13582 7.664082 AAATTTTTGTTGTGTGAATGTGTCA 57.336 28.000 0.00 0.00 0.00 3.58
9589 13583 7.664082 AATTTTTGTTGTGTGAATGTGTCAA 57.336 28.000 0.00 0.00 38.23 3.18
9590 13584 7.664082 ATTTTTGTTGTGTGAATGTGTCAAA 57.336 28.000 0.00 0.00 38.23 2.69
9591 13585 7.482654 TTTTTGTTGTGTGAATGTGTCAAAA 57.517 28.000 0.00 0.00 38.23 2.44
9592 13586 6.459257 TTTGTTGTGTGAATGTGTCAAAAC 57.541 33.333 0.00 0.00 38.23 2.43
9593 13587 4.489810 TGTTGTGTGAATGTGTCAAAACC 58.510 39.130 0.00 0.00 38.23 3.27
9594 13588 3.412981 TGTGTGAATGTGTCAAAACCG 57.587 42.857 0.00 0.00 38.23 4.44
9595 13589 2.116366 GTGTGAATGTGTCAAAACCGC 58.884 47.619 0.00 0.00 38.23 5.68
9596 13590 1.066303 TGTGAATGTGTCAAAACCGCC 59.934 47.619 0.00 0.00 38.23 6.13
9597 13591 0.671251 TGAATGTGTCAAAACCGCCC 59.329 50.000 0.00 0.00 31.51 6.13
9598 13592 0.958822 GAATGTGTCAAAACCGCCCT 59.041 50.000 0.00 0.00 0.00 5.19
9599 13593 2.156098 GAATGTGTCAAAACCGCCCTA 58.844 47.619 0.00 0.00 0.00 3.53
9600 13594 2.279935 ATGTGTCAAAACCGCCCTAA 57.720 45.000 0.00 0.00 0.00 2.69
9601 13595 1.310904 TGTGTCAAAACCGCCCTAAC 58.689 50.000 0.00 0.00 0.00 2.34
9602 13596 1.134037 TGTGTCAAAACCGCCCTAACT 60.134 47.619 0.00 0.00 0.00 2.24
9603 13597 1.265905 GTGTCAAAACCGCCCTAACTG 59.734 52.381 0.00 0.00 0.00 3.16
9604 13598 1.134037 TGTCAAAACCGCCCTAACTGT 60.134 47.619 0.00 0.00 0.00 3.55
9605 13599 1.265905 GTCAAAACCGCCCTAACTGTG 59.734 52.381 0.00 0.00 0.00 3.66
9606 13600 1.134037 TCAAAACCGCCCTAACTGTGT 60.134 47.619 0.00 0.00 0.00 3.72
9607 13601 2.104451 TCAAAACCGCCCTAACTGTGTA 59.896 45.455 0.00 0.00 0.00 2.90
9608 13602 3.078837 CAAAACCGCCCTAACTGTGTAT 58.921 45.455 0.00 0.00 0.00 2.29
9609 13603 2.396590 AACCGCCCTAACTGTGTATG 57.603 50.000 0.00 0.00 0.00 2.39
9610 13604 0.107848 ACCGCCCTAACTGTGTATGC 60.108 55.000 0.00 0.00 0.00 3.14
9611 13605 0.107897 CCGCCCTAACTGTGTATGCA 60.108 55.000 0.00 0.00 0.00 3.96
9612 13606 1.475034 CCGCCCTAACTGTGTATGCAT 60.475 52.381 3.79 3.79 0.00 3.96
9613 13607 2.224185 CCGCCCTAACTGTGTATGCATA 60.224 50.000 1.16 1.16 0.00 3.14
9614 13608 3.557054 CCGCCCTAACTGTGTATGCATAT 60.557 47.826 10.16 0.00 0.00 1.78
9615 13609 3.679980 CGCCCTAACTGTGTATGCATATC 59.320 47.826 10.16 7.24 0.00 1.63
9616 13610 4.561530 CGCCCTAACTGTGTATGCATATCT 60.562 45.833 10.16 0.00 0.00 1.98
9617 13611 4.932200 GCCCTAACTGTGTATGCATATCTC 59.068 45.833 10.16 5.71 0.00 2.75
9618 13612 5.164233 CCCTAACTGTGTATGCATATCTCG 58.836 45.833 10.16 2.43 0.00 4.04
9619 13613 5.164233 CCTAACTGTGTATGCATATCTCGG 58.836 45.833 10.16 11.37 0.00 4.63
9620 13614 4.937201 AACTGTGTATGCATATCTCGGA 57.063 40.909 10.16 0.00 0.00 4.55
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 4.347583 TCAAGCATGAAAAGGGACCAAAAT 59.652 37.500 0.00 0.00 30.99 1.82
41 42 3.708631 TCAAGCATGAAAAGGGACCAAAA 59.291 39.130 0.00 0.00 30.99 2.44
45 46 2.098117 CGATCAAGCATGAAAAGGGACC 59.902 50.000 0.00 0.00 39.49 4.46
47 48 3.009723 GTCGATCAAGCATGAAAAGGGA 58.990 45.455 0.00 0.00 39.49 4.20
65 66 4.739228 TGAATCAACAAAATTGTGCAGTCG 59.261 37.500 0.00 0.00 41.31 4.18
68 69 8.246908 ACATATGAATCAACAAAATTGTGCAG 57.753 30.769 10.38 0.00 41.31 4.41
181 182 7.863877 TGGAATCGCTCATTTTTCATATGAATG 59.136 33.333 18.61 13.89 33.54 2.67
182 183 7.944061 TGGAATCGCTCATTTTTCATATGAAT 58.056 30.769 18.61 1.55 33.54 2.57
188 189 4.082787 ACGTTGGAATCGCTCATTTTTCAT 60.083 37.500 0.00 0.00 0.00 2.57
192 193 3.181510 GCTACGTTGGAATCGCTCATTTT 60.182 43.478 0.00 0.00 0.00 1.82
201 202 1.003866 GCCATTCGCTACGTTGGAATC 60.004 52.381 5.88 0.00 34.86 2.52
209 210 0.813610 TTGGATGGCCATTCGCTACG 60.814 55.000 21.84 0.00 45.46 3.51
213 214 0.246086 TTGTTTGGATGGCCATTCGC 59.754 50.000 21.84 12.58 45.46 4.70
228 229 1.604278 GGCTCAACTTCGAAGCTTGTT 59.396 47.619 24.86 9.79 0.00 2.83
238 239 1.736681 GCATGTGAGAGGCTCAACTTC 59.263 52.381 18.26 5.89 42.46 3.01
239 240 1.818642 GCATGTGAGAGGCTCAACTT 58.181 50.000 18.26 9.76 42.46 2.66
241 242 0.390340 TCGCATGTGAGAGGCTCAAC 60.390 55.000 18.26 14.69 42.46 3.18
253 254 1.202639 TCACACTTGGAACTCGCATGT 60.203 47.619 0.00 0.00 0.00 3.21
254 255 1.511850 TCACACTTGGAACTCGCATG 58.488 50.000 0.00 0.00 0.00 4.06
295 296 8.298854 TCATGTTGACATTGAACCTAAATTCTG 58.701 33.333 0.00 0.00 33.61 3.02
302 303 8.006298 ACTTTTTCATGTTGACATTGAACCTA 57.994 30.769 0.00 0.00 33.61 3.08
303 304 6.877236 ACTTTTTCATGTTGACATTGAACCT 58.123 32.000 0.00 0.00 33.61 3.50
317 318 6.579666 TCAAATCTCCCTGACTTTTTCATG 57.420 37.500 0.00 0.00 32.17 3.07
353 355 6.964807 TGATATTCAAGACCATGGAATTGG 57.035 37.500 21.47 3.75 42.82 3.16
365 367 7.884877 ACTCTGTTTGGATGTTGATATTCAAGA 59.115 33.333 0.00 0.00 37.00 3.02
391 397 7.078228 CGTATAGCAGCGCAATAGATCATATA 58.922 38.462 11.47 0.00 0.00 0.86
414 420 5.514274 AGAAAAATGGTCAAACATGACGT 57.486 34.783 0.00 0.00 39.57 4.34
416 422 7.254421 GGACAAAGAAAAATGGTCAAACATGAC 60.254 37.037 0.00 0.36 38.04 3.06
427 433 3.380142 CCACGTGGACAAAGAAAAATGG 58.620 45.455 31.31 0.00 37.39 3.16
428 434 2.794350 GCCACGTGGACAAAGAAAAATG 59.206 45.455 38.30 6.54 37.39 2.32
430 436 1.819288 TGCCACGTGGACAAAGAAAAA 59.181 42.857 38.30 7.92 37.39 1.94
434 440 0.813610 CAGTGCCACGTGGACAAAGA 60.814 55.000 38.30 10.55 37.39 2.52
443 449 0.973632 TAAGATCACCAGTGCCACGT 59.026 50.000 0.00 0.00 0.00 4.49
545 3368 7.871973 TCATCTAGTCGTAGTATAAGGTCACTC 59.128 40.741 0.00 0.00 0.00 3.51
556 3379 3.827008 ACGGGTCATCTAGTCGTAGTA 57.173 47.619 0.00 0.00 32.03 1.82
557 3380 2.681848 CAACGGGTCATCTAGTCGTAGT 59.318 50.000 0.00 0.00 33.52 2.73
558 3381 2.541178 GCAACGGGTCATCTAGTCGTAG 60.541 54.545 0.00 0.00 33.52 3.51
686 3878 1.960763 TCGGTTCGAGACGACGGAA 60.961 57.895 9.09 0.00 34.89 4.30
687 3879 2.357396 TCGGTTCGAGACGACGGA 60.357 61.111 9.09 0.85 34.89 4.69
911 4123 0.117340 AGCTAGGGTTCTGAGGGTGT 59.883 55.000 0.00 0.00 0.00 4.16
913 4125 1.574263 GAAGCTAGGGTTCTGAGGGT 58.426 55.000 0.00 0.00 37.13 4.34
1365 4619 2.811317 CGCGTCTCCTTGGTCTGC 60.811 66.667 0.00 0.00 0.00 4.26
1593 4847 1.003003 TCACTGGCGTCATGGAAATCA 59.997 47.619 0.00 0.00 0.00 2.57
1611 4868 4.025858 GGAGCAGCAGCAGGGTCA 62.026 66.667 15.52 0.00 45.49 4.02
1668 4934 1.337817 CGAACTCGACAGCAACTCCG 61.338 60.000 0.00 0.00 43.02 4.63
1735 5001 2.017049 CTGTAAGCACAATGGGCTACC 58.983 52.381 11.67 4.76 41.66 3.18
1816 5083 4.038642 TCCAGGCAAAACAATGAAGGTTAC 59.961 41.667 0.00 0.00 0.00 2.50
1837 5104 2.681848 CAAGTCATCTTGCACCTGATCC 59.318 50.000 0.00 0.00 43.34 3.36
1864 5131 1.758862 TCAGCCACATCGTCATCATCT 59.241 47.619 0.00 0.00 0.00 2.90
1873 5140 0.798776 GGTTCAACTCAGCCACATCG 59.201 55.000 0.00 0.00 0.00 3.84
1900 5170 2.510411 CCGCCCATCTGCATACCA 59.490 61.111 0.00 0.00 0.00 3.25
1927 5197 2.983136 GGAGTTCTGCATATCATCGTCG 59.017 50.000 0.00 0.00 0.00 5.12
2197 5467 1.153005 CTGATCTTCAGCCCTGGCC 60.153 63.158 4.13 0.00 43.17 5.36
2452 5722 2.295909 GAGGCTATCGAGATCAAGCAGT 59.704 50.000 9.30 0.00 36.68 4.40
2554 5824 2.171237 TGGCACATGGACTTCCTCATAG 59.829 50.000 0.00 0.00 36.82 2.23
2617 5887 6.205298 CCACCCTGGGATATCAGATATCTTA 58.795 44.000 22.23 14.89 41.08 2.10
3550 6848 1.146263 CCCATACGGCAAGAGGTCC 59.854 63.158 0.00 0.00 0.00 4.46
3556 6854 1.745232 TAGCAAACCCATACGGCAAG 58.255 50.000 0.00 0.00 33.26 4.01
4133 7464 4.923516 ATAGATCACCAAGATGATGGGG 57.076 45.455 0.00 0.00 45.79 4.96
4151 7482 8.301730 ACACATGAAACAATGCTTGAAAATAG 57.698 30.769 0.00 0.00 0.00 1.73
4269 7657 0.874390 AACACCGCAACATACAGCAG 59.126 50.000 0.00 0.00 0.00 4.24
4270 7658 0.871722 GAACACCGCAACATACAGCA 59.128 50.000 0.00 0.00 0.00 4.41
4388 7777 7.224753 ACATCTGGCATAAACAATACTAAGACG 59.775 37.037 0.00 0.00 0.00 4.18
4441 7831 9.135189 CCAAAGAGGATATTTGTTCCATATGAA 57.865 33.333 3.65 0.00 41.22 2.57
4639 8353 8.593492 ATTCTAAAAACCAATCTCAAGCAAAC 57.407 30.769 0.00 0.00 0.00 2.93
4677 8391 0.179070 GGATGAAGCCTCTTCGACCC 60.179 60.000 2.61 0.64 0.00 4.46
4681 8395 3.320541 ACTGATAGGATGAAGCCTCTTCG 59.679 47.826 0.00 0.00 39.50 3.79
4731 8445 9.070149 GCAAATAGCTGAGAATTTCTTTTACTG 57.930 33.333 0.00 0.00 41.15 2.74
4827 8702 8.043710 CCAACTATGTTTCTCTGGTATTTCTCT 58.956 37.037 0.00 0.00 0.00 3.10
4904 8781 6.016610 GTGGAACAGGCAAGAAGTACAAAATA 60.017 38.462 0.00 0.00 41.80 1.40
5559 9517 1.805428 GCGCAAGGGTGTTTGGACAT 61.805 55.000 0.30 0.00 36.39 3.06
6436 10394 4.644685 TCCCCTTTGTCAAGAAGTTTCAAG 59.355 41.667 0.00 0.00 30.57 3.02
6514 10472 0.535102 CTTGCTGGACAGGTTTCCGT 60.535 55.000 1.01 0.00 38.69 4.69
6607 10565 1.867233 CTTGAAATACGCCTCATCCGG 59.133 52.381 0.00 0.00 0.00 5.14
6670 10633 5.653769 TCCAAGATCTTTAGCATTTCCAAGG 59.346 40.000 4.86 0.00 0.00 3.61
6973 10940 7.718314 CCAATGAAAGTATCCATCTCATCTTGA 59.282 37.037 0.00 0.00 0.00 3.02
7036 11009 1.515521 GCAAGTAGCCCACACCACAC 61.516 60.000 0.00 0.00 37.23 3.82
7285 11258 6.655003 ACAATATAACACACTTCCCTGAGTTG 59.345 38.462 0.00 0.00 0.00 3.16
7426 11399 5.396362 CACTGCATCTTGTTTGTTTTCTACG 59.604 40.000 0.00 0.00 0.00 3.51
7594 11567 1.198713 CCTCCTCTACAGCCACACAT 58.801 55.000 0.00 0.00 0.00 3.21
7849 11822 0.392863 TGGCCTTGACATGTGGATCG 60.393 55.000 1.15 0.00 0.00 3.69
7867 11840 3.730761 GACTGCAGCAGGGCGTTG 61.731 66.667 26.38 0.27 35.51 4.10
7969 11942 4.454678 TGCTGGAGATAACATCAACCATC 58.545 43.478 0.00 0.00 37.37 3.51
7993 11966 2.202987 GCCAGAGTGAGCCATCCG 60.203 66.667 0.00 0.00 0.00 4.18
8044 12017 1.750399 ACGATCCCACATGCCTTGC 60.750 57.895 0.00 0.00 0.00 4.01
8065 12038 0.673022 GGAGTTGGAGCAGCACAGAG 60.673 60.000 0.00 0.00 0.00 3.35
8152 12125 0.388294 TGCTCATCTCAGCCAGATCG 59.612 55.000 0.00 0.00 40.20 3.69
8192 12165 2.216046 CTCAGAGTTTGACAGCTGCAA 58.784 47.619 15.27 15.94 0.00 4.08
8221 12194 1.205657 GCTTGAAGAACACGACGACA 58.794 50.000 0.00 0.00 0.00 4.35
8229 12202 3.015516 GGGAACCGCTTGAAGAACA 57.984 52.632 0.00 0.00 40.86 3.18
8263 12236 3.136123 CCCTCGCGGACCTCGTAA 61.136 66.667 6.13 0.00 41.72 3.18
8275 12248 1.299165 CCTTATGTCGTCGCCCTCG 60.299 63.158 0.00 0.00 0.00 4.63
8332 12305 2.040544 GGGCAGGTTGGTCATGTCG 61.041 63.158 0.00 0.00 32.90 4.35
8523 12496 4.822350 TCAGGTAGATCATGTAGTCCTTCG 59.178 45.833 0.00 0.00 0.00 3.79
8591 12564 1.833630 TCCAGCTTCCTTGATGTCGAT 59.166 47.619 0.00 0.00 0.00 3.59
8672 12648 9.559732 TGATAAGTTCCAGGTCACATAATATTG 57.440 33.333 0.00 0.00 0.00 1.90
8697 12673 8.567948 AGGTGTTACATTACAGACAAAAAGATG 58.432 33.333 0.00 0.00 0.00 2.90
8701 12677 7.867305 TCAGGTGTTACATTACAGACAAAAA 57.133 32.000 0.00 0.00 0.00 1.94
8703 12679 7.051623 ACTTCAGGTGTTACATTACAGACAAA 58.948 34.615 0.00 0.00 0.00 2.83
8750 12738 3.930229 ACAATAACGTACGTGTGCATCAT 59.070 39.130 23.57 5.90 0.00 2.45
8786 12774 4.075963 ACTAGTGTAGATCCTCCTCGTC 57.924 50.000 0.00 0.00 0.00 4.20
8813 12801 6.074659 GCTGAAACAGATGCATAAGTGCAAA 61.075 40.000 7.22 0.00 46.89 3.68
8816 12804 3.119743 TGCTGAAACAGATGCATAAGTGC 60.120 43.478 0.00 1.86 41.96 4.40
8817 12805 4.409570 GTGCTGAAACAGATGCATAAGTG 58.590 43.478 0.00 0.00 37.76 3.16
8818 12806 3.441572 GGTGCTGAAACAGATGCATAAGT 59.558 43.478 0.00 0.00 37.76 2.24
8819 12807 3.693085 AGGTGCTGAAACAGATGCATAAG 59.307 43.478 0.00 0.00 37.76 1.73
8820 12808 3.689347 AGGTGCTGAAACAGATGCATAA 58.311 40.909 0.00 0.00 37.76 1.90
8821 12809 3.354948 AGGTGCTGAAACAGATGCATA 57.645 42.857 0.00 0.00 37.76 3.14
8822 12810 2.211250 AGGTGCTGAAACAGATGCAT 57.789 45.000 0.00 0.00 37.76 3.96
8823 12811 1.985473 AAGGTGCTGAAACAGATGCA 58.015 45.000 2.81 0.00 32.44 3.96
8824 12812 2.555757 AGAAAGGTGCTGAAACAGATGC 59.444 45.455 2.81 0.00 32.44 3.91
8825 12813 4.843220 AAGAAAGGTGCTGAAACAGATG 57.157 40.909 2.81 0.00 32.44 2.90
8826 12814 4.279420 GGAAAGAAAGGTGCTGAAACAGAT 59.721 41.667 2.81 0.00 32.44 2.90
8827 12815 3.632145 GGAAAGAAAGGTGCTGAAACAGA 59.368 43.478 2.81 0.00 32.44 3.41
8828 12816 3.243535 GGGAAAGAAAGGTGCTGAAACAG 60.244 47.826 0.00 0.00 34.12 3.16
8829 12817 2.693074 GGGAAAGAAAGGTGCTGAAACA 59.307 45.455 0.00 0.00 0.00 2.83
8830 12818 2.959030 AGGGAAAGAAAGGTGCTGAAAC 59.041 45.455 0.00 0.00 0.00 2.78
8831 12819 2.958355 CAGGGAAAGAAAGGTGCTGAAA 59.042 45.455 0.00 0.00 0.00 2.69
8832 12820 2.174639 TCAGGGAAAGAAAGGTGCTGAA 59.825 45.455 0.00 0.00 0.00 3.02
8833 12821 1.774254 TCAGGGAAAGAAAGGTGCTGA 59.226 47.619 0.00 0.00 0.00 4.26
8834 12822 2.276732 TCAGGGAAAGAAAGGTGCTG 57.723 50.000 0.00 0.00 0.00 4.41
8835 12823 2.376518 TCATCAGGGAAAGAAAGGTGCT 59.623 45.455 0.00 0.00 0.00 4.40
8836 12824 2.795329 TCATCAGGGAAAGAAAGGTGC 58.205 47.619 0.00 0.00 0.00 5.01
8837 12825 3.698040 CCATCATCAGGGAAAGAAAGGTG 59.302 47.826 0.00 0.00 0.00 4.00
8838 12826 3.334881 ACCATCATCAGGGAAAGAAAGGT 59.665 43.478 0.00 0.00 0.00 3.50
8839 12827 3.973425 ACCATCATCAGGGAAAGAAAGG 58.027 45.455 0.00 0.00 0.00 3.11
8840 12828 5.717119 CAAACCATCATCAGGGAAAGAAAG 58.283 41.667 0.00 0.00 0.00 2.62
8841 12829 4.021192 GCAAACCATCATCAGGGAAAGAAA 60.021 41.667 0.00 0.00 0.00 2.52
8842 12830 3.511146 GCAAACCATCATCAGGGAAAGAA 59.489 43.478 0.00 0.00 0.00 2.52
8843 12831 3.091545 GCAAACCATCATCAGGGAAAGA 58.908 45.455 0.00 0.00 0.00 2.52
8844 12832 3.094572 AGCAAACCATCATCAGGGAAAG 58.905 45.455 0.00 0.00 0.00 2.62
8845 12833 2.827322 CAGCAAACCATCATCAGGGAAA 59.173 45.455 0.00 0.00 0.00 3.13
8846 12834 2.041485 TCAGCAAACCATCATCAGGGAA 59.959 45.455 0.00 0.00 0.00 3.97
8847 12835 1.634973 TCAGCAAACCATCATCAGGGA 59.365 47.619 0.00 0.00 0.00 4.20
8848 12836 2.133281 TCAGCAAACCATCATCAGGG 57.867 50.000 0.00 0.00 0.00 4.45
8849 12837 3.284617 TCATCAGCAAACCATCATCAGG 58.715 45.455 0.00 0.00 0.00 3.86
8850 12838 3.945921 ACTCATCAGCAAACCATCATCAG 59.054 43.478 0.00 0.00 0.00 2.90
8851 12839 3.959293 ACTCATCAGCAAACCATCATCA 58.041 40.909 0.00 0.00 0.00 3.07
8852 12840 5.180868 GGATACTCATCAGCAAACCATCATC 59.819 44.000 0.00 0.00 32.32 2.92
8853 12841 5.068636 GGATACTCATCAGCAAACCATCAT 58.931 41.667 0.00 0.00 32.32 2.45
8854 12842 4.080413 TGGATACTCATCAGCAAACCATCA 60.080 41.667 0.00 0.00 32.32 3.07
8855 12843 4.454678 TGGATACTCATCAGCAAACCATC 58.545 43.478 0.00 0.00 32.32 3.51
8856 12844 4.508551 TGGATACTCATCAGCAAACCAT 57.491 40.909 0.00 0.00 32.32 3.55
8857 12845 3.998913 TGGATACTCATCAGCAAACCA 57.001 42.857 0.00 0.00 32.32 3.67
8858 12846 4.641989 ACAATGGATACTCATCAGCAAACC 59.358 41.667 0.00 0.00 32.32 3.27
8859 12847 5.824904 ACAATGGATACTCATCAGCAAAC 57.175 39.130 0.00 0.00 32.32 2.93
8860 12848 6.182627 AGAACAATGGATACTCATCAGCAAA 58.817 36.000 0.00 0.00 32.32 3.68
8861 12849 5.748402 AGAACAATGGATACTCATCAGCAA 58.252 37.500 0.00 0.00 32.32 3.91
8862 12850 5.363562 AGAACAATGGATACTCATCAGCA 57.636 39.130 0.00 0.00 32.32 4.41
8863 12851 5.587844 ACAAGAACAATGGATACTCATCAGC 59.412 40.000 0.00 0.00 32.32 4.26
8864 12852 6.820152 TCACAAGAACAATGGATACTCATCAG 59.180 38.462 0.00 0.00 32.32 2.90
8865 12853 6.710278 TCACAAGAACAATGGATACTCATCA 58.290 36.000 0.00 0.00 32.32 3.07
8866 12854 7.281774 ACATCACAAGAACAATGGATACTCATC 59.718 37.037 0.00 0.00 37.61 2.92
8867 12855 7.114754 ACATCACAAGAACAATGGATACTCAT 58.885 34.615 0.00 0.00 37.61 2.90
8868 12856 6.475504 ACATCACAAGAACAATGGATACTCA 58.524 36.000 0.00 0.00 37.61 3.41
8869 12857 6.992063 ACATCACAAGAACAATGGATACTC 57.008 37.500 0.00 0.00 37.61 2.59
8870 12858 7.170965 AGAACATCACAAGAACAATGGATACT 58.829 34.615 0.00 0.00 37.61 2.12
8871 12859 7.383102 AGAACATCACAAGAACAATGGATAC 57.617 36.000 0.00 0.00 0.00 2.24
8872 12860 9.685276 ATAAGAACATCACAAGAACAATGGATA 57.315 29.630 0.00 0.00 0.00 2.59
8873 12861 6.906157 AAGAACATCACAAGAACAATGGAT 57.094 33.333 0.00 0.00 0.00 3.41
8874 12862 7.884877 AGATAAGAACATCACAAGAACAATGGA 59.115 33.333 0.00 0.00 0.00 3.41
8875 12863 7.966753 CAGATAAGAACATCACAAGAACAATGG 59.033 37.037 0.00 0.00 0.00 3.16
8876 12864 8.724229 TCAGATAAGAACATCACAAGAACAATG 58.276 33.333 0.00 0.00 0.00 2.82
8877 12865 8.853077 TCAGATAAGAACATCACAAGAACAAT 57.147 30.769 0.00 0.00 0.00 2.71
8878 12866 8.724229 CATCAGATAAGAACATCACAAGAACAA 58.276 33.333 0.00 0.00 0.00 2.83
8883 12871 8.944029 AGAAACATCAGATAAGAACATCACAAG 58.056 33.333 0.00 0.00 0.00 3.16
8885 12873 8.853077 AAGAAACATCAGATAAGAACATCACA 57.147 30.769 0.00 0.00 0.00 3.58
8911 12899 7.714377 TGTTGCCAATCACTGACAAATAAAATT 59.286 29.630 0.00 0.00 0.00 1.82
8914 12903 6.154203 TGTTGCCAATCACTGACAAATAAA 57.846 33.333 0.00 0.00 0.00 1.40
8916 12905 5.781210 TTGTTGCCAATCACTGACAAATA 57.219 34.783 0.00 0.00 0.00 1.40
8924 12913 2.094752 GCGGTAATTGTTGCCAATCACT 60.095 45.455 0.00 0.00 40.42 3.41
8932 12921 3.399879 CCACTGCGGTAATTGTTGC 57.600 52.632 0.00 0.00 0.00 4.17
8945 12934 9.265901 CTGAACTTAATCCTATTATCACCACTG 57.734 37.037 0.00 0.00 0.00 3.66
8967 12956 9.283768 ACACAATAACATGTTAATCAGACTGAA 57.716 29.630 21.57 0.00 0.00 3.02
8969 12958 9.897744 AAACACAATAACATGTTAATCAGACTG 57.102 29.630 21.57 11.98 38.08 3.51
8998 12987 7.724951 TGGATCATTTCATATATTCACTGGCAA 59.275 33.333 0.00 0.00 0.00 4.52
9000 12989 7.692460 TGGATCATTTCATATATTCACTGGC 57.308 36.000 0.00 0.00 0.00 4.85
9014 13003 7.047460 AGACAAATGCCTTATGGATCATTTC 57.953 36.000 9.08 2.88 35.38 2.17
9017 13006 5.533903 GTGAGACAAATGCCTTATGGATCAT 59.466 40.000 0.00 0.00 34.57 2.45
9025 13014 4.947388 GGTAATGGTGAGACAAATGCCTTA 59.053 41.667 0.00 0.00 0.00 2.69
9064 13054 9.613428 CCAAACCAATCTACAATCATTCTACTA 57.387 33.333 0.00 0.00 0.00 1.82
9073 13063 9.444600 TCTACTTAACCAAACCAATCTACAATC 57.555 33.333 0.00 0.00 0.00 2.67
9102 13094 9.267084 GGGCATAAACTTCTAAAAATCACAAAA 57.733 29.630 0.00 0.00 0.00 2.44
9134 13126 2.990514 GTGAACACCACAAAACCACAAC 59.009 45.455 0.00 0.00 45.03 3.32
9148 13140 3.134458 CACCAAGGAGAAGAGTGAACAC 58.866 50.000 0.00 0.00 0.00 3.32
9167 13159 3.561503 GGTCGGCACTTAAAATTGACAC 58.438 45.455 0.00 0.00 0.00 3.67
9168 13160 2.554893 GGGTCGGCACTTAAAATTGACA 59.445 45.455 0.00 0.00 0.00 3.58
9169 13161 2.413634 CGGGTCGGCACTTAAAATTGAC 60.414 50.000 0.00 0.00 0.00 3.18
9208 13200 5.421212 GCAAATCTTTTGCCACATTTCAA 57.579 34.783 12.74 0.00 39.38 2.69
9242 13235 9.416284 ACAAAAACACTCTATTCCCTTCTTAAA 57.584 29.630 0.00 0.00 0.00 1.52
9289 13283 5.717654 TCCCCATGAAAACTAATTACAACCC 59.282 40.000 0.00 0.00 0.00 4.11
9314 13308 5.530171 AGATGCTCACACCATTTATCATCAC 59.470 40.000 0.00 0.00 33.51 3.06
9326 13320 4.009675 TGGTCAATAAAGATGCTCACACC 58.990 43.478 0.00 0.00 0.00 4.16
9400 13394 3.326836 TGTGAAATGTACTCGGCATGA 57.673 42.857 0.00 0.00 0.00 3.07
9418 13412 5.101628 CGCATTGGCAGTAAACATAAATGT 58.898 37.500 0.00 0.00 41.00 2.71
9430 13424 3.574074 AAGGGCTCGCATTGGCAGT 62.574 57.895 0.00 0.00 41.24 4.40
9450 13444 8.694540 TGCATTTACATTATCTAACATTGCCTT 58.305 29.630 0.00 0.00 0.00 4.35
9453 13447 8.918658 CCATGCATTTACATTATCTAACATTGC 58.081 33.333 0.00 0.00 0.00 3.56
9454 13448 8.918658 GCCATGCATTTACATTATCTAACATTG 58.081 33.333 0.00 0.00 0.00 2.82
9469 13463 7.640852 GCAAAATGATAATTGCCATGCATTTA 58.359 30.769 0.00 6.04 44.72 1.40
9486 13480 0.323269 TGGGCGATCCAGCAAAATGA 60.323 50.000 0.00 0.00 41.46 2.57
9487 13481 2.191680 TGGGCGATCCAGCAAAATG 58.808 52.632 0.00 0.00 41.46 2.32
9488 13482 4.762016 TGGGCGATCCAGCAAAAT 57.238 50.000 0.00 0.00 41.46 1.82
9489 13483 6.997544 TGGATATTGGGCGATCCAGCAAAA 62.998 45.833 0.00 0.00 45.37 2.44
9490 13484 5.590917 TGGATATTGGGCGATCCAGCAAA 62.591 47.826 0.00 0.00 45.37 3.68
9491 13485 4.147308 TGGATATTGGGCGATCCAGCAA 62.147 50.000 0.00 0.00 45.37 3.91
9492 13486 2.661433 TGGATATTGGGCGATCCAGCA 61.661 52.381 0.00 0.00 45.37 4.41
9493 13487 0.036732 TGGATATTGGGCGATCCAGC 59.963 55.000 0.00 0.00 45.37 4.85
9496 13490 3.197766 TGTCTATGGATATTGGGCGATCC 59.802 47.826 0.00 0.00 41.85 3.36
9497 13491 4.184629 GTGTCTATGGATATTGGGCGATC 58.815 47.826 0.00 0.00 0.00 3.69
9498 13492 3.582647 TGTGTCTATGGATATTGGGCGAT 59.417 43.478 0.00 0.00 0.00 4.58
9499 13493 2.969262 TGTGTCTATGGATATTGGGCGA 59.031 45.455 0.00 0.00 0.00 5.54
9500 13494 3.067106 GTGTGTCTATGGATATTGGGCG 58.933 50.000 0.00 0.00 0.00 6.13
9501 13495 3.181445 TGGTGTGTCTATGGATATTGGGC 60.181 47.826 0.00 0.00 0.00 5.36
9502 13496 4.705110 TGGTGTGTCTATGGATATTGGG 57.295 45.455 0.00 0.00 0.00 4.12
9503 13497 5.684704 AGTTGGTGTGTCTATGGATATTGG 58.315 41.667 0.00 0.00 0.00 3.16
9504 13498 9.424319 GTATAGTTGGTGTGTCTATGGATATTG 57.576 37.037 0.00 0.00 0.00 1.90
9505 13499 8.594550 GGTATAGTTGGTGTGTCTATGGATATT 58.405 37.037 0.00 0.00 0.00 1.28
9506 13500 7.093902 CGGTATAGTTGGTGTGTCTATGGATAT 60.094 40.741 0.00 0.00 0.00 1.63
9507 13501 6.208007 CGGTATAGTTGGTGTGTCTATGGATA 59.792 42.308 0.00 0.00 0.00 2.59
9508 13502 5.010719 CGGTATAGTTGGTGTGTCTATGGAT 59.989 44.000 0.00 0.00 0.00 3.41
9509 13503 4.340097 CGGTATAGTTGGTGTGTCTATGGA 59.660 45.833 0.00 0.00 0.00 3.41
9510 13504 4.617959 CGGTATAGTTGGTGTGTCTATGG 58.382 47.826 0.00 0.00 0.00 2.74
9511 13505 4.049186 GCGGTATAGTTGGTGTGTCTATG 58.951 47.826 0.00 0.00 0.00 2.23
9512 13506 3.243301 CGCGGTATAGTTGGTGTGTCTAT 60.243 47.826 0.00 0.00 0.00 1.98
9513 13507 2.097954 CGCGGTATAGTTGGTGTGTCTA 59.902 50.000 0.00 0.00 0.00 2.59
9514 13508 1.135199 CGCGGTATAGTTGGTGTGTCT 60.135 52.381 0.00 0.00 0.00 3.41
9515 13509 1.135315 TCGCGGTATAGTTGGTGTGTC 60.135 52.381 6.13 0.00 0.00 3.67
9516 13510 0.889994 TCGCGGTATAGTTGGTGTGT 59.110 50.000 6.13 0.00 0.00 3.72
9517 13511 1.274596 GTCGCGGTATAGTTGGTGTG 58.725 55.000 6.13 0.00 0.00 3.82
9518 13512 0.179156 CGTCGCGGTATAGTTGGTGT 60.179 55.000 6.13 0.00 0.00 4.16
9519 13513 0.868602 CCGTCGCGGTATAGTTGGTG 60.869 60.000 6.13 0.00 42.73 4.17
9520 13514 1.434696 CCGTCGCGGTATAGTTGGT 59.565 57.895 6.13 0.00 42.73 3.67
9521 13515 4.314096 CCGTCGCGGTATAGTTGG 57.686 61.111 6.13 0.00 42.73 3.77
9531 13525 1.060713 GGTGATCAATATCCGTCGCG 58.939 55.000 0.00 0.00 0.00 5.87
9532 13526 1.060713 CGGTGATCAATATCCGTCGC 58.939 55.000 12.96 0.00 38.45 5.19
9533 13527 1.000607 ACCGGTGATCAATATCCGTCG 60.001 52.381 6.12 8.76 41.17 5.12
9534 13528 2.404215 CACCGGTGATCAATATCCGTC 58.596 52.381 31.31 0.00 41.17 4.79
9535 13529 1.070134 CCACCGGTGATCAATATCCGT 59.930 52.381 36.07 6.71 41.17 4.69
9536 13530 1.343142 TCCACCGGTGATCAATATCCG 59.657 52.381 36.07 14.66 42.22 4.18
9537 13531 3.600388 GATCCACCGGTGATCAATATCC 58.400 50.000 36.07 9.82 0.00 2.59
9538 13532 3.007940 TGGATCCACCGGTGATCAATATC 59.992 47.826 36.07 23.22 42.61 1.63
9539 13533 2.978978 TGGATCCACCGGTGATCAATAT 59.021 45.455 36.07 17.35 42.61 1.28
9540 13534 2.403561 TGGATCCACCGGTGATCAATA 58.596 47.619 36.07 19.85 42.61 1.90
9541 13535 1.212375 TGGATCCACCGGTGATCAAT 58.788 50.000 36.07 21.46 42.61 2.57
9542 13536 1.140852 GATGGATCCACCGGTGATCAA 59.859 52.381 36.07 26.34 42.61 2.57
9543 13537 0.758734 GATGGATCCACCGGTGATCA 59.241 55.000 36.07 24.68 42.61 2.92
9544 13538 0.758734 TGATGGATCCACCGGTGATC 59.241 55.000 36.07 29.93 42.61 2.92
9545 13539 1.212375 TTGATGGATCCACCGGTGAT 58.788 50.000 36.07 24.93 42.61 3.06
9546 13540 0.988063 TTTGATGGATCCACCGGTGA 59.012 50.000 36.07 21.38 42.61 4.02
9547 13541 1.832883 TTTTGATGGATCCACCGGTG 58.167 50.000 28.26 28.26 42.61 4.94
9548 13542 2.826674 ATTTTGATGGATCCACCGGT 57.173 45.000 18.99 0.00 42.61 5.28
9549 13543 4.470334 AAAATTTTGATGGATCCACCGG 57.530 40.909 18.99 0.00 42.61 5.28
9550 13544 5.237048 ACAAAAATTTTGATGGATCCACCG 58.763 37.500 23.39 0.00 42.61 4.94
9551 13545 6.486320 ACAACAAAAATTTTGATGGATCCACC 59.514 34.615 25.18 8.28 39.54 4.61
9552 13546 7.012232 ACACAACAAAAATTTTGATGGATCCAC 59.988 33.333 25.18 11.83 0.00 4.02
9553 13547 7.012138 CACACAACAAAAATTTTGATGGATCCA 59.988 33.333 25.18 18.88 0.00 3.41
9554 13548 7.226325 TCACACAACAAAAATTTTGATGGATCC 59.774 33.333 25.18 4.20 0.00 3.36
9555 13549 8.140677 TCACACAACAAAAATTTTGATGGATC 57.859 30.769 25.18 0.00 0.00 3.36
9556 13550 8.503458 TTCACACAACAAAAATTTTGATGGAT 57.497 26.923 25.18 14.19 0.00 3.41
9557 13551 7.912056 TTCACACAACAAAAATTTTGATGGA 57.088 28.000 25.18 14.37 0.00 3.41
9558 13552 8.182881 ACATTCACACAACAAAAATTTTGATGG 58.817 29.630 25.18 18.24 0.00 3.51
9559 13553 9.001049 CACATTCACACAACAAAAATTTTGATG 57.999 29.630 23.39 22.47 0.00 3.07
9560 13554 8.728833 ACACATTCACACAACAAAAATTTTGAT 58.271 25.926 23.39 10.28 0.00 2.57
9561 13555 8.092521 ACACATTCACACAACAAAAATTTTGA 57.907 26.923 23.39 0.46 0.00 2.69
9562 13556 8.013947 TGACACATTCACACAACAAAAATTTTG 58.986 29.630 16.06 16.06 0.00 2.44
9563 13557 8.092521 TGACACATTCACACAACAAAAATTTT 57.907 26.923 0.00 0.00 0.00 1.82
9564 13558 7.664082 TGACACATTCACACAACAAAAATTT 57.336 28.000 0.00 0.00 0.00 1.82
9565 13559 7.664082 TTGACACATTCACACAACAAAAATT 57.336 28.000 0.00 0.00 32.26 1.82
9566 13560 7.664082 TTTGACACATTCACACAACAAAAAT 57.336 28.000 0.00 0.00 32.26 1.82
9567 13561 7.348201 GTTTTGACACATTCACACAACAAAAA 58.652 30.769 0.00 0.00 37.59 1.94
9568 13562 6.073548 GGTTTTGACACATTCACACAACAAAA 60.074 34.615 0.00 0.00 32.26 2.44
9569 13563 5.406780 GGTTTTGACACATTCACACAACAAA 59.593 36.000 0.00 0.00 32.26 2.83
9570 13564 4.926238 GGTTTTGACACATTCACACAACAA 59.074 37.500 0.00 0.00 32.26 2.83
9571 13565 4.489810 GGTTTTGACACATTCACACAACA 58.510 39.130 0.00 0.00 32.26 3.33
9572 13566 3.545873 CGGTTTTGACACATTCACACAAC 59.454 43.478 0.00 0.00 32.26 3.32
9573 13567 3.763902 CGGTTTTGACACATTCACACAA 58.236 40.909 0.00 0.00 32.26 3.33
9574 13568 2.478709 GCGGTTTTGACACATTCACACA 60.479 45.455 0.00 0.00 32.26 3.72
9575 13569 2.116366 GCGGTTTTGACACATTCACAC 58.884 47.619 0.00 0.00 32.26 3.82
9576 13570 1.066303 GGCGGTTTTGACACATTCACA 59.934 47.619 0.00 0.00 32.26 3.58
9577 13571 1.601914 GGGCGGTTTTGACACATTCAC 60.602 52.381 0.00 0.00 32.26 3.18
9578 13572 0.671251 GGGCGGTTTTGACACATTCA 59.329 50.000 0.00 0.00 0.00 2.57
9579 13573 0.958822 AGGGCGGTTTTGACACATTC 59.041 50.000 0.00 0.00 0.00 2.67
9580 13574 2.279935 TAGGGCGGTTTTGACACATT 57.720 45.000 0.00 0.00 0.00 2.71
9581 13575 1.883926 GTTAGGGCGGTTTTGACACAT 59.116 47.619 0.00 0.00 0.00 3.21
9582 13576 1.134037 AGTTAGGGCGGTTTTGACACA 60.134 47.619 0.00 0.00 0.00 3.72
9583 13577 1.265905 CAGTTAGGGCGGTTTTGACAC 59.734 52.381 0.00 0.00 0.00 3.67
9584 13578 1.134037 ACAGTTAGGGCGGTTTTGACA 60.134 47.619 0.00 0.00 0.00 3.58
9585 13579 1.265905 CACAGTTAGGGCGGTTTTGAC 59.734 52.381 0.00 0.00 0.00 3.18
9586 13580 1.134037 ACACAGTTAGGGCGGTTTTGA 60.134 47.619 0.00 0.00 0.00 2.69
9587 13581 1.314730 ACACAGTTAGGGCGGTTTTG 58.685 50.000 0.00 0.00 0.00 2.44
9588 13582 2.934886 TACACAGTTAGGGCGGTTTT 57.065 45.000 0.00 0.00 0.00 2.43
9589 13583 2.706890 CATACACAGTTAGGGCGGTTT 58.293 47.619 0.00 0.00 0.00 3.27
9590 13584 1.677820 GCATACACAGTTAGGGCGGTT 60.678 52.381 0.00 0.00 0.00 4.44
9591 13585 0.107848 GCATACACAGTTAGGGCGGT 60.108 55.000 0.00 0.00 0.00 5.68
9592 13586 0.107897 TGCATACACAGTTAGGGCGG 60.108 55.000 0.00 0.00 0.00 6.13
9593 13587 1.953559 ATGCATACACAGTTAGGGCG 58.046 50.000 0.00 0.00 0.00 6.13
9594 13588 4.899502 AGATATGCATACACAGTTAGGGC 58.100 43.478 8.99 0.00 0.00 5.19
9595 13589 5.164233 CGAGATATGCATACACAGTTAGGG 58.836 45.833 8.99 0.00 0.00 3.53
9596 13590 5.048013 TCCGAGATATGCATACACAGTTAGG 60.048 44.000 8.99 5.25 0.00 2.69
9597 13591 6.013842 TCCGAGATATGCATACACAGTTAG 57.986 41.667 8.99 0.00 0.00 2.34
9599 13593 4.937201 TCCGAGATATGCATACACAGTT 57.063 40.909 8.99 0.00 0.00 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.