Multiple sequence alignment - TraesCS6B01G033700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G033700 chr6B 100.000 4995 0 0 1 4995 20141808 20146802 0.000000e+00 9225.0
1 TraesCS6B01G033700 chr6B 94.422 1219 40 3 1220 2412 58816380 58817596 0.000000e+00 1849.0
2 TraesCS6B01G033700 chr6B 93.801 1226 48 7 1214 2412 705710841 705712065 0.000000e+00 1818.0
3 TraesCS6B01G033700 chr6B 93.765 1219 47 3 1220 2412 100627810 100626595 0.000000e+00 1803.0
4 TraesCS6B01G033700 chr6B 87.288 118 12 3 4111 4226 216353422 216353306 1.130000e-26 132.0
5 TraesCS6B01G033700 chr6B 88.571 70 6 2 619 687 20142012 20142080 3.200000e-12 84.2
6 TraesCS6B01G033700 chr6B 88.571 70 6 2 205 273 20142426 20142494 3.200000e-12 84.2
7 TraesCS6B01G033700 chr6B 100.000 29 0 0 4860 4888 20146580 20146608 3.000000e-03 54.7
8 TraesCS6B01G033700 chr6B 100.000 29 0 0 4773 4801 20146667 20146695 3.000000e-03 54.7
9 TraesCS6B01G033700 chr3B 94.914 1219 35 5 1220 2412 801077556 801078773 0.000000e+00 1882.0
10 TraesCS6B01G033700 chr3B 94.094 1219 46 2 1220 2412 46041993 46043211 0.000000e+00 1829.0
11 TraesCS6B01G033700 chr3B 95.035 1128 30 11 1220 2321 662488541 662487414 0.000000e+00 1749.0
12 TraesCS6B01G033700 chr3B 86.863 373 40 7 252 620 617441376 617441009 4.650000e-110 409.0
13 TraesCS6B01G033700 chr3B 94.167 120 6 1 4110 4228 814894564 814894445 1.100000e-41 182.0
14 TraesCS6B01G033700 chr5B 94.681 1222 39 2 1220 2415 666302584 666301363 0.000000e+00 1873.0
15 TraesCS6B01G033700 chr5B 94.082 659 21 5 3457 4111 693981547 693980903 0.000000e+00 985.0
16 TraesCS6B01G033700 chr5B 96.333 409 15 0 2412 2820 693981952 693981544 0.000000e+00 673.0
17 TraesCS6B01G033700 chr5B 87.845 362 41 2 259 618 419993209 419993569 5.980000e-114 422.0
18 TraesCS6B01G033700 chr5B 95.094 265 9 4 959 1220 693982211 693981948 1.000000e-111 414.0
19 TraesCS6B01G033700 chr5B 86.612 366 44 4 256 618 406606897 406606534 2.800000e-107 399.0
20 TraesCS6B01G033700 chr5B 86.216 370 44 5 258 622 272586687 272587054 1.300000e-105 394.0
21 TraesCS6B01G033700 chr5B 91.241 137 10 2 4112 4246 1407913 1408049 8.540000e-43 185.0
22 TraesCS6B01G033700 chr5B 96.512 86 3 0 4536 4621 693980907 693980822 5.210000e-30 143.0
23 TraesCS6B01G033700 chr2B 94.754 1220 37 12 1220 2412 729792783 729791564 0.000000e+00 1873.0
24 TraesCS6B01G033700 chr2B 93.617 1222 46 16 1220 2412 705330014 705331232 0.000000e+00 1796.0
25 TraesCS6B01G033700 chr2B 93.301 1224 49 3 1221 2411 87543973 87542750 0.000000e+00 1775.0
26 TraesCS6B01G033700 chr2B 96.000 100 4 0 4436 4535 642984198 642984297 4.000000e-36 163.0
27 TraesCS6B01G033700 chr2B 73.084 509 113 20 3495 3989 779635384 779634886 5.180000e-35 159.0
28 TraesCS6B01G033700 chr2B 93.333 105 6 1 4431 4535 642982725 642982828 2.410000e-33 154.0
29 TraesCS6B01G033700 chr2B 72.779 529 114 25 3477 3989 779468908 779468394 8.660000e-33 152.0
30 TraesCS6B01G033700 chr7B 94.672 1220 37 3 1219 2412 10577204 10575987 0.000000e+00 1868.0
31 TraesCS6B01G033700 chr7B 94.330 1217 40 13 1222 2412 111270714 111271927 0.000000e+00 1838.0
32 TraesCS6B01G033700 chr7B 92.471 425 19 9 4111 4534 666665108 666664696 3.330000e-166 595.0
33 TraesCS6B01G033700 chr7B 91.080 426 21 10 4111 4535 666666532 666666123 1.210000e-155 560.0
34 TraesCS6B01G033700 chr7B 73.465 505 115 17 3495 3986 2562732 2562234 6.650000e-39 172.0
35 TraesCS6B01G033700 chr1B 93.816 1229 42 10 1218 2414 312931958 312930732 0.000000e+00 1818.0
36 TraesCS6B01G033700 chr1B 93.755 1169 43 4 1220 2359 279907074 279905907 0.000000e+00 1727.0
37 TraesCS6B01G033700 chr1B 85.831 367 46 4 258 619 530005288 530005653 7.840000e-103 385.0
38 TraesCS6B01G033700 chr1B 83.784 370 55 4 253 619 210971647 210972014 3.700000e-91 346.0
39 TraesCS6B01G033700 chr1B 97.727 88 0 1 2821 2906 339238889 339238802 3.110000e-32 150.0
40 TraesCS6B01G033700 chr1B 92.523 107 3 2 4125 4228 670298224 670298328 1.120000e-31 148.0
41 TraesCS6B01G033700 chr1B 94.521 73 4 0 3363 3435 339238683 339238611 4.090000e-21 113.0
42 TraesCS6B01G033700 chr1B 94.521 73 4 0 3363 3435 369002098 369002026 4.090000e-21 113.0
43 TraesCS6B01G033700 chr1B 81.203 133 16 8 4111 4236 35440972 35440842 1.140000e-16 99.0
44 TraesCS6B01G033700 chrUn 94.511 1166 37 3 1220 2359 31721387 31720223 0.000000e+00 1773.0
45 TraesCS6B01G033700 chrUn 94.976 637 30 2 2821 3456 87736477 87737112 0.000000e+00 998.0
46 TraesCS6B01G033700 chrUn 91.232 422 21 8 4128 4536 193255829 193255411 1.210000e-155 560.0
47 TraesCS6B01G033700 chrUn 90.758 422 23 8 4128 4536 342092849 342092431 2.630000e-152 549.0
48 TraesCS6B01G033700 chrUn 90.544 423 23 9 4128 4536 344188657 344188238 1.220000e-150 544.0
49 TraesCS6B01G033700 chrUn 86.478 318 36 6 253 566 95257409 95257723 4.790000e-90 342.0
50 TraesCS6B01G033700 chrUn 83.624 287 40 6 253 536 325555361 325555643 3.830000e-66 263.0
51 TraesCS6B01G033700 chrUn 82.517 286 42 6 258 536 317543972 317543688 1.390000e-60 244.0
52 TraesCS6B01G033700 chrUn 82.517 286 42 6 258 536 355957597 355957313 1.390000e-60 244.0
53 TraesCS6B01G033700 chr7A 92.874 1235 57 7 1205 2412 706120031 706118801 0.000000e+00 1764.0
54 TraesCS6B01G033700 chr7A 85.593 118 14 3 4112 4226 111109309 111109192 2.440000e-23 121.0
55 TraesCS6B01G033700 chr5D 96.813 659 16 3 3457 4111 559719017 559718360 0.000000e+00 1096.0
56 TraesCS6B01G033700 chr5D 87.764 899 69 23 73 967 559720563 559719702 0.000000e+00 1013.0
57 TraesCS6B01G033700 chr5D 96.822 409 13 0 2412 2820 559719422 559719014 0.000000e+00 684.0
58 TraesCS6B01G033700 chr5D 95.756 377 16 0 4619 4995 559718096 559717720 4.280000e-170 608.0
59 TraesCS6B01G033700 chr5D 95.604 273 10 2 950 1220 559719690 559719418 2.140000e-118 436.0
60 TraesCS6B01G033700 chr5D 95.349 86 4 0 4536 4621 559718364 559718279 2.430000e-28 137.0
61 TraesCS6B01G033700 chr5D 97.368 38 1 0 619 656 559720430 559720393 1.160000e-06 65.8
62 TraesCS6B01G033700 chr5D 94.737 38 2 0 582 619 388610498 388610535 5.400000e-05 60.2
63 TraesCS6B01G033700 chr4A 94.394 660 32 3 3458 4113 613270590 613269932 0.000000e+00 1009.0
64 TraesCS6B01G033700 chr4A 93.607 610 31 6 615 1220 613271597 613270992 0.000000e+00 904.0
65 TraesCS6B01G033700 chr4A 96.577 409 14 0 2412 2820 613270996 613270588 0.000000e+00 678.0
66 TraesCS6B01G033700 chr4A 95.200 375 17 1 4619 4993 613269490 613269117 4.310000e-165 592.0
67 TraesCS6B01G033700 chr4A 93.258 267 15 3 1 264 613271800 613271534 1.690000e-104 390.0
68 TraesCS6B01G033700 chr4A 73.267 505 106 23 3495 3981 649058128 649058621 1.860000e-34 158.0
69 TraesCS6B01G033700 chr4A 95.349 86 4 0 4536 4621 613269937 613269852 2.430000e-28 137.0
70 TraesCS6B01G033700 chr4A 100.000 29 0 0 4860 4888 613269337 613269309 3.000000e-03 54.7
71 TraesCS6B01G033700 chr3D 91.693 638 30 4 2821 3458 238624332 238624946 0.000000e+00 863.0
72 TraesCS6B01G033700 chr3D 87.533 377 32 10 258 626 149850754 149850385 5.980000e-114 422.0
73 TraesCS6B01G033700 chr3D 85.753 365 48 3 256 618 572635145 572634783 2.820000e-102 383.0
74 TraesCS6B01G033700 chr4B 88.336 643 45 10 2830 3465 74948961 74949580 0.000000e+00 745.0
75 TraesCS6B01G033700 chr4B 85.829 374 44 6 253 618 59231815 59232187 6.060000e-104 388.0
76 TraesCS6B01G033700 chr4B 91.246 297 5 5 4243 4535 655178533 655178812 7.840000e-103 385.0
77 TraesCS6B01G033700 chr4B 85.333 375 44 9 253 622 373063676 373064044 1.310000e-100 377.0
78 TraesCS6B01G033700 chr4B 100.000 32 0 0 2821 2852 74948940 74948971 5.400000e-05 60.2
79 TraesCS6B01G033700 chr2D 92.708 480 33 2 1221 1700 264305298 264305775 0.000000e+00 691.0
80 TraesCS6B01G033700 chr2D 86.527 334 37 7 282 611 317497149 317497478 1.320000e-95 361.0
81 TraesCS6B01G033700 chr2D 86.601 306 35 5 282 583 98993007 98992704 2.880000e-87 333.0
82 TraesCS6B01G033700 chr2D 73.269 520 114 20 3484 3989 635439061 635438553 3.090000e-37 167.0
83 TraesCS6B01G033700 chr1D 89.921 506 25 9 1220 1700 491983625 491984129 3.280000e-176 628.0
84 TraesCS6B01G033700 chr1D 84.916 358 48 5 269 622 345745587 345745942 1.710000e-94 357.0
85 TraesCS6B01G033700 chr1D 81.818 209 31 6 333 537 125825836 125825631 8.600000e-38 169.0
86 TraesCS6B01G033700 chr1D 84.746 118 16 2 4112 4227 63415957 63416074 3.160000e-22 117.0
87 TraesCS6B01G033700 chr2A 89.181 342 28 8 282 618 97863240 97862903 7.730000e-113 418.0
88 TraesCS6B01G033700 chr7D 87.158 366 44 2 256 619 119936551 119936187 3.600000e-111 412.0
89 TraesCS6B01G033700 chr7D 86.562 320 35 6 282 597 474603797 474603482 3.700000e-91 346.0
90 TraesCS6B01G033700 chr7D 73.978 465 106 13 3532 3986 42214117 42214576 1.850000e-39 174.0
91 TraesCS6B01G033700 chr3A 86.376 367 45 4 259 622 490227192 490227556 3.620000e-106 396.0
92 TraesCS6B01G033700 chr6A 86.243 378 27 16 3082 3459 196834721 196834369 2.180000e-103 387.0
93 TraesCS6B01G033700 chr5A 85.326 368 47 6 256 618 187513266 187512901 1.700000e-99 374.0
94 TraesCS6B01G033700 chr5A 84.865 370 51 4 253 618 325369563 325369931 7.900000e-98 368.0
95 TraesCS6B01G033700 chr4D 93.651 63 4 0 256 318 3612274 3612212 1.480000e-15 95.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G033700 chr6B 20141808 20146802 4994 False 9225.000000 9225 100.000000 1 4995 1 chr6B.!!$F1 4994
1 TraesCS6B01G033700 chr6B 58816380 58817596 1216 False 1849.000000 1849 94.422000 1220 2412 1 chr6B.!!$F2 1192
2 TraesCS6B01G033700 chr6B 705710841 705712065 1224 False 1818.000000 1818 93.801000 1214 2412 1 chr6B.!!$F3 1198
3 TraesCS6B01G033700 chr6B 100626595 100627810 1215 True 1803.000000 1803 93.765000 1220 2412 1 chr6B.!!$R1 1192
4 TraesCS6B01G033700 chr3B 801077556 801078773 1217 False 1882.000000 1882 94.914000 1220 2412 1 chr3B.!!$F2 1192
5 TraesCS6B01G033700 chr3B 46041993 46043211 1218 False 1829.000000 1829 94.094000 1220 2412 1 chr3B.!!$F1 1192
6 TraesCS6B01G033700 chr3B 662487414 662488541 1127 True 1749.000000 1749 95.035000 1220 2321 1 chr3B.!!$R2 1101
7 TraesCS6B01G033700 chr5B 666301363 666302584 1221 True 1873.000000 1873 94.681000 1220 2415 1 chr5B.!!$R2 1195
8 TraesCS6B01G033700 chr5B 693980822 693982211 1389 True 553.750000 985 95.505250 959 4621 4 chr5B.!!$R3 3662
9 TraesCS6B01G033700 chr2B 729791564 729792783 1219 True 1873.000000 1873 94.754000 1220 2412 1 chr2B.!!$R2 1192
10 TraesCS6B01G033700 chr2B 705330014 705331232 1218 False 1796.000000 1796 93.617000 1220 2412 1 chr2B.!!$F1 1192
11 TraesCS6B01G033700 chr2B 87542750 87543973 1223 True 1775.000000 1775 93.301000 1221 2411 1 chr2B.!!$R1 1190
12 TraesCS6B01G033700 chr7B 10575987 10577204 1217 True 1868.000000 1868 94.672000 1219 2412 1 chr7B.!!$R2 1193
13 TraesCS6B01G033700 chr7B 111270714 111271927 1213 False 1838.000000 1838 94.330000 1222 2412 1 chr7B.!!$F1 1190
14 TraesCS6B01G033700 chr7B 666664696 666666532 1836 True 577.500000 595 91.775500 4111 4535 2 chr7B.!!$R3 424
15 TraesCS6B01G033700 chr1B 312930732 312931958 1226 True 1818.000000 1818 93.816000 1218 2414 1 chr1B.!!$R3 1196
16 TraesCS6B01G033700 chr1B 279905907 279907074 1167 True 1727.000000 1727 93.755000 1220 2359 1 chr1B.!!$R2 1139
17 TraesCS6B01G033700 chrUn 31720223 31721387 1164 True 1773.000000 1773 94.511000 1220 2359 1 chrUn.!!$R1 1139
18 TraesCS6B01G033700 chrUn 87736477 87737112 635 False 998.000000 998 94.976000 2821 3456 1 chrUn.!!$F1 635
19 TraesCS6B01G033700 chr7A 706118801 706120031 1230 True 1764.000000 1764 92.874000 1205 2412 1 chr7A.!!$R2 1207
20 TraesCS6B01G033700 chr5D 559717720 559720563 2843 True 577.114286 1096 95.068000 73 4995 7 chr5D.!!$R1 4922
21 TraesCS6B01G033700 chr4A 613269117 613271800 2683 True 537.814286 1009 95.483571 1 4993 7 chr4A.!!$R1 4992
22 TraesCS6B01G033700 chr3D 238624332 238624946 614 False 863.000000 863 91.693000 2821 3458 1 chr3D.!!$F1 637
23 TraesCS6B01G033700 chr4B 74948940 74949580 640 False 402.600000 745 94.168000 2821 3465 2 chr4B.!!$F4 644
24 TraesCS6B01G033700 chr1D 491983625 491984129 504 False 628.000000 628 89.921000 1220 1700 1 chr1D.!!$F3 480

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
359 363 0.034337 CAGGCAAGCAAACAGGCAAT 59.966 50.0 0.00 0.00 35.83 3.56 F
577 581 0.105593 AGGGTGTGCAGCTATCATCG 59.894 55.0 0.00 0.00 0.00 3.84 F
581 585 0.108233 TGTGCAGCTATCATCGTGCA 60.108 50.0 0.00 0.00 43.50 4.57 F
584 588 0.110328 GCAGCTATCATCGTGCATGC 60.110 55.0 11.82 11.82 35.91 4.06 F
585 589 0.163146 CAGCTATCATCGTGCATGCG 59.837 55.0 14.09 0.00 31.70 4.73 F
586 590 0.249615 AGCTATCATCGTGCATGCGT 60.250 50.0 14.09 0.00 31.70 5.24 F
2709 3178 0.539986 GGCATTGACTACTCCGGGAA 59.460 55.0 0.00 0.00 0.00 3.97 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2144 2611 0.467474 ATCCTGGTCCGCTCGTGATA 60.467 55.000 0.00 0.0 0.00 2.15 R
2485 2954 4.681074 TGTGGATGACTCAACAACAGTA 57.319 40.909 0.00 0.0 0.00 2.74 R
2601 3070 9.553064 GAATATTCTCAACACTATTCTCACCAT 57.447 33.333 8.27 0.0 31.11 3.55 R
2645 3114 0.462375 GCCACACCCGGAAAGTTTTT 59.538 50.000 0.73 0.0 0.00 1.94 R
2709 3178 0.677288 TCCGATGACCAACACGTTCT 59.323 50.000 0.00 0.0 0.00 3.01 R
2811 3280 5.904984 TGCCAAACACCTCCATAGTATAT 57.095 39.130 0.00 0.0 0.00 0.86 R
4536 6455 0.171231 GAATTCCTTCTTGGGCACGC 59.829 55.000 0.00 0.0 36.20 5.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 27 3.679980 TGTTACGCTCAAGAGATCAAAGC 59.320 43.478 0.32 0.00 0.00 3.51
50 52 9.158233 GCTGAGTACACCAAACTAATACAATTA 57.842 33.333 0.00 0.00 0.00 1.40
67 69 9.620660 AATACAATTAGGATTTGAAACGTTCAC 57.379 29.630 0.00 0.00 39.87 3.18
223 227 9.865152 TGAATCATATTGTGAATTTAGATGGGA 57.135 29.630 0.00 0.00 40.97 4.37
232 236 8.642935 TGTGAATTTAGATGGGAAATGTAACA 57.357 30.769 0.00 0.00 0.00 2.41
233 237 8.739039 TGTGAATTTAGATGGGAAATGTAACAG 58.261 33.333 0.00 0.00 0.00 3.16
234 238 8.956426 GTGAATTTAGATGGGAAATGTAACAGA 58.044 33.333 0.00 0.00 0.00 3.41
235 239 9.527157 TGAATTTAGATGGGAAATGTAACAGAA 57.473 29.630 0.00 0.00 0.00 3.02
238 242 7.880160 TTAGATGGGAAATGTAACAGAATGG 57.120 36.000 0.00 0.00 43.62 3.16
239 243 6.078456 AGATGGGAAATGTAACAGAATGGA 57.922 37.500 0.00 0.00 43.62 3.41
240 244 6.676558 AGATGGGAAATGTAACAGAATGGAT 58.323 36.000 0.00 0.00 43.62 3.41
241 245 7.128077 AGATGGGAAATGTAACAGAATGGATT 58.872 34.615 0.00 0.00 43.62 3.01
242 246 7.620888 AGATGGGAAATGTAACAGAATGGATTT 59.379 33.333 0.00 0.00 43.62 2.17
243 247 6.934056 TGGGAAATGTAACAGAATGGATTTG 58.066 36.000 0.00 0.00 43.62 2.32
244 248 6.496565 TGGGAAATGTAACAGAATGGATTTGT 59.503 34.615 0.00 0.00 43.62 2.83
245 249 7.671819 TGGGAAATGTAACAGAATGGATTTGTA 59.328 33.333 0.00 0.00 43.62 2.41
246 250 8.695456 GGGAAATGTAACAGAATGGATTTGTAT 58.305 33.333 0.00 0.00 43.62 2.29
251 255 8.877864 TGTAACAGAATGGATTTGTATTTCCT 57.122 30.769 0.00 0.00 43.62 3.36
252 256 8.956426 TGTAACAGAATGGATTTGTATTTCCTC 58.044 33.333 0.00 0.00 43.62 3.71
253 257 7.410120 AACAGAATGGATTTGTATTTCCTCC 57.590 36.000 0.00 0.00 43.62 4.30
254 258 6.735556 ACAGAATGGATTTGTATTTCCTCCT 58.264 36.000 0.00 0.00 43.62 3.69
255 259 7.872138 ACAGAATGGATTTGTATTTCCTCCTA 58.128 34.615 0.00 0.00 43.62 2.94
256 260 8.336235 ACAGAATGGATTTGTATTTCCTCCTAA 58.664 33.333 0.00 0.00 43.62 2.69
257 261 9.359653 CAGAATGGATTTGTATTTCCTCCTAAT 57.640 33.333 0.00 0.00 32.95 1.73
258 262 9.942526 AGAATGGATTTGTATTTCCTCCTAATT 57.057 29.630 0.00 0.00 32.95 1.40
336 340 3.861689 CGAAAGTATCGTAACCTTGGACC 59.138 47.826 0.00 0.00 46.52 4.46
337 341 4.618927 CGAAAGTATCGTAACCTTGGACCA 60.619 45.833 0.00 0.00 46.52 4.02
338 342 4.467198 AAGTATCGTAACCTTGGACCAG 57.533 45.455 0.00 0.00 0.00 4.00
339 343 2.167900 AGTATCGTAACCTTGGACCAGC 59.832 50.000 0.00 0.00 0.00 4.85
340 344 0.252197 ATCGTAACCTTGGACCAGCC 59.748 55.000 0.00 0.00 37.10 4.85
348 352 4.666253 TGGACCAGCCAGGCAAGC 62.666 66.667 15.80 0.00 43.33 4.01
349 353 4.666253 GGACCAGCCAGGCAAGCA 62.666 66.667 15.80 0.00 43.14 3.91
350 354 2.598394 GACCAGCCAGGCAAGCAA 60.598 61.111 15.80 0.00 43.14 3.91
351 355 2.123338 ACCAGCCAGGCAAGCAAA 60.123 55.556 15.80 0.00 43.14 3.68
352 356 2.341176 CCAGCCAGGCAAGCAAAC 59.659 61.111 15.80 0.00 0.00 2.93
353 357 2.500714 CCAGCCAGGCAAGCAAACA 61.501 57.895 15.80 0.00 0.00 2.83
354 358 1.006571 CAGCCAGGCAAGCAAACAG 60.007 57.895 15.80 0.00 0.00 3.16
355 359 2.205152 AGCCAGGCAAGCAAACAGG 61.205 57.895 15.80 0.00 0.00 4.00
356 360 2.341176 CCAGGCAAGCAAACAGGC 59.659 61.111 0.00 0.00 0.00 4.85
357 361 2.500714 CCAGGCAAGCAAACAGGCA 61.501 57.895 0.00 0.00 35.83 4.75
358 362 1.442567 CAGGCAAGCAAACAGGCAA 59.557 52.632 0.00 0.00 35.83 4.52
359 363 0.034337 CAGGCAAGCAAACAGGCAAT 59.966 50.000 0.00 0.00 35.83 3.56
360 364 0.760572 AGGCAAGCAAACAGGCAATT 59.239 45.000 0.00 0.00 35.83 2.32
361 365 1.969923 AGGCAAGCAAACAGGCAATTA 59.030 42.857 0.00 0.00 35.83 1.40
362 366 2.568509 AGGCAAGCAAACAGGCAATTAT 59.431 40.909 0.00 0.00 35.83 1.28
363 367 2.674357 GGCAAGCAAACAGGCAATTATG 59.326 45.455 0.00 0.00 35.83 1.90
386 390 4.948847 CCAAAAAGGCAAGCTAAAAGACT 58.051 39.130 0.00 0.00 0.00 3.24
387 391 4.746611 CCAAAAAGGCAAGCTAAAAGACTG 59.253 41.667 0.00 0.00 0.00 3.51
388 392 5.351458 CAAAAAGGCAAGCTAAAAGACTGT 58.649 37.500 0.00 0.00 0.00 3.55
389 393 4.574599 AAAGGCAAGCTAAAAGACTGTG 57.425 40.909 0.00 0.00 0.00 3.66
390 394 3.492102 AGGCAAGCTAAAAGACTGTGA 57.508 42.857 0.00 0.00 0.00 3.58
391 395 3.406764 AGGCAAGCTAAAAGACTGTGAG 58.593 45.455 0.00 0.00 0.00 3.51
392 396 3.071602 AGGCAAGCTAAAAGACTGTGAGA 59.928 43.478 0.00 0.00 0.00 3.27
393 397 3.815401 GGCAAGCTAAAAGACTGTGAGAA 59.185 43.478 0.00 0.00 0.00 2.87
394 398 4.083590 GGCAAGCTAAAAGACTGTGAGAAG 60.084 45.833 0.00 0.00 0.00 2.85
395 399 4.513318 GCAAGCTAAAAGACTGTGAGAAGT 59.487 41.667 0.00 0.00 0.00 3.01
396 400 5.559799 GCAAGCTAAAAGACTGTGAGAAGTG 60.560 44.000 0.00 0.00 0.00 3.16
397 401 5.537300 AGCTAAAAGACTGTGAGAAGTGA 57.463 39.130 0.00 0.00 0.00 3.41
398 402 5.537188 AGCTAAAAGACTGTGAGAAGTGAG 58.463 41.667 0.00 0.00 0.00 3.51
399 403 5.303078 AGCTAAAAGACTGTGAGAAGTGAGA 59.697 40.000 0.00 0.00 0.00 3.27
400 404 5.633182 GCTAAAAGACTGTGAGAAGTGAGAG 59.367 44.000 0.00 0.00 0.00 3.20
401 405 5.860941 AAAAGACTGTGAGAAGTGAGAGA 57.139 39.130 0.00 0.00 0.00 3.10
402 406 5.860941 AAAGACTGTGAGAAGTGAGAGAA 57.139 39.130 0.00 0.00 0.00 2.87
403 407 5.452078 AAGACTGTGAGAAGTGAGAGAAG 57.548 43.478 0.00 0.00 0.00 2.85
404 408 3.826157 AGACTGTGAGAAGTGAGAGAAGG 59.174 47.826 0.00 0.00 0.00 3.46
405 409 2.298729 ACTGTGAGAAGTGAGAGAAGGC 59.701 50.000 0.00 0.00 0.00 4.35
406 410 1.620819 TGTGAGAAGTGAGAGAAGGCC 59.379 52.381 0.00 0.00 0.00 5.19
407 411 1.066502 GTGAGAAGTGAGAGAAGGCCC 60.067 57.143 0.00 0.00 0.00 5.80
408 412 1.203237 TGAGAAGTGAGAGAAGGCCCT 60.203 52.381 0.00 0.00 0.00 5.19
409 413 1.905894 GAGAAGTGAGAGAAGGCCCTT 59.094 52.381 0.00 0.00 0.00 3.95
410 414 2.304470 GAGAAGTGAGAGAAGGCCCTTT 59.696 50.000 0.00 0.00 0.00 3.11
411 415 2.304470 AGAAGTGAGAGAAGGCCCTTTC 59.696 50.000 0.00 0.00 0.00 2.62
412 416 2.037385 AGTGAGAGAAGGCCCTTTCT 57.963 50.000 6.95 6.95 40.02 2.52
413 417 3.191888 AGTGAGAGAAGGCCCTTTCTA 57.808 47.619 7.21 0.00 37.53 2.10
414 418 2.835156 AGTGAGAGAAGGCCCTTTCTAC 59.165 50.000 7.21 3.22 37.53 2.59
415 419 2.567615 GTGAGAGAAGGCCCTTTCTACA 59.432 50.000 7.21 8.18 37.53 2.74
416 420 2.567615 TGAGAGAAGGCCCTTTCTACAC 59.432 50.000 7.21 3.63 37.53 2.90
417 421 2.567615 GAGAGAAGGCCCTTTCTACACA 59.432 50.000 7.21 0.00 37.53 3.72
418 422 2.979678 AGAGAAGGCCCTTTCTACACAA 59.020 45.455 7.21 0.00 37.53 3.33
419 423 3.075148 GAGAAGGCCCTTTCTACACAAC 58.925 50.000 7.21 0.00 37.53 3.32
420 424 1.804748 GAAGGCCCTTTCTACACAACG 59.195 52.381 0.00 0.00 0.00 4.10
421 425 1.053424 AGGCCCTTTCTACACAACGA 58.947 50.000 0.00 0.00 0.00 3.85
422 426 1.418637 AGGCCCTTTCTACACAACGAA 59.581 47.619 0.00 0.00 0.00 3.85
423 427 2.158726 AGGCCCTTTCTACACAACGAAA 60.159 45.455 0.00 0.00 0.00 3.46
424 428 2.619646 GGCCCTTTCTACACAACGAAAA 59.380 45.455 0.00 0.00 0.00 2.29
425 429 3.304458 GGCCCTTTCTACACAACGAAAAG 60.304 47.826 0.00 0.00 0.00 2.27
426 430 3.314357 GCCCTTTCTACACAACGAAAAGT 59.686 43.478 0.00 0.00 0.00 2.66
427 431 4.554134 GCCCTTTCTACACAACGAAAAGTC 60.554 45.833 0.00 0.00 0.00 3.01
428 432 4.573201 CCCTTTCTACACAACGAAAAGTCA 59.427 41.667 0.00 0.00 0.00 3.41
429 433 5.499047 CCTTTCTACACAACGAAAAGTCAC 58.501 41.667 0.00 0.00 0.00 3.67
430 434 4.765281 TTCTACACAACGAAAAGTCACG 57.235 40.909 0.00 0.00 0.00 4.35
431 435 3.772932 TCTACACAACGAAAAGTCACGT 58.227 40.909 0.00 0.00 44.57 4.49
432 436 2.798834 ACACAACGAAAAGTCACGTG 57.201 45.000 9.94 9.94 42.43 4.49
433 437 2.070783 ACACAACGAAAAGTCACGTGT 58.929 42.857 16.51 0.00 42.43 4.49
434 438 2.093152 ACACAACGAAAAGTCACGTGTC 59.907 45.455 16.51 10.42 42.43 3.67
435 439 2.092995 CACAACGAAAAGTCACGTGTCA 59.907 45.455 16.51 0.00 42.43 3.58
436 440 2.737783 ACAACGAAAAGTCACGTGTCAA 59.262 40.909 16.51 0.00 42.43 3.18
437 441 3.186817 ACAACGAAAAGTCACGTGTCAAA 59.813 39.130 16.51 0.00 42.43 2.69
438 442 4.152526 CAACGAAAAGTCACGTGTCAAAA 58.847 39.130 16.51 0.00 42.43 2.44
439 443 3.998522 ACGAAAAGTCACGTGTCAAAAG 58.001 40.909 16.51 5.81 41.17 2.27
440 444 3.181514 ACGAAAAGTCACGTGTCAAAAGG 60.182 43.478 16.51 4.51 41.17 3.11
441 445 3.062909 CGAAAAGTCACGTGTCAAAAGGA 59.937 43.478 16.51 0.00 0.00 3.36
442 446 4.260620 CGAAAAGTCACGTGTCAAAAGGAT 60.261 41.667 16.51 0.00 0.00 3.24
443 447 5.050634 CGAAAAGTCACGTGTCAAAAGGATA 60.051 40.000 16.51 0.00 0.00 2.59
444 448 6.510478 CGAAAAGTCACGTGTCAAAAGGATAA 60.510 38.462 16.51 0.00 0.00 1.75
445 449 6.877611 AAAGTCACGTGTCAAAAGGATAAT 57.122 33.333 16.51 0.00 0.00 1.28
446 450 7.972832 AAAGTCACGTGTCAAAAGGATAATA 57.027 32.000 16.51 0.00 0.00 0.98
447 451 7.972832 AAGTCACGTGTCAAAAGGATAATAA 57.027 32.000 16.51 0.00 0.00 1.40
448 452 7.972832 AGTCACGTGTCAAAAGGATAATAAA 57.027 32.000 16.51 0.00 0.00 1.40
449 453 8.385898 AGTCACGTGTCAAAAGGATAATAAAA 57.614 30.769 16.51 0.00 0.00 1.52
450 454 8.842280 AGTCACGTGTCAAAAGGATAATAAAAA 58.158 29.630 16.51 0.00 0.00 1.94
451 455 9.113876 GTCACGTGTCAAAAGGATAATAAAAAG 57.886 33.333 16.51 0.00 0.00 2.27
452 456 9.058174 TCACGTGTCAAAAGGATAATAAAAAGA 57.942 29.630 16.51 0.00 0.00 2.52
453 457 9.113876 CACGTGTCAAAAGGATAATAAAAAGAC 57.886 33.333 7.58 0.00 0.00 3.01
454 458 8.842280 ACGTGTCAAAAGGATAATAAAAAGACA 58.158 29.630 0.00 0.00 0.00 3.41
455 459 9.672086 CGTGTCAAAAGGATAATAAAAAGACAA 57.328 29.630 0.00 0.00 34.54 3.18
467 471 9.807921 ATAATAAAAAGACAAAGAGAAGTGGGA 57.192 29.630 0.00 0.00 0.00 4.37
468 472 8.533569 AATAAAAAGACAAAGAGAAGTGGGAA 57.466 30.769 0.00 0.00 0.00 3.97
469 473 6.850752 AAAAAGACAAAGAGAAGTGGGAAA 57.149 33.333 0.00 0.00 0.00 3.13
470 474 6.850752 AAAAGACAAAGAGAAGTGGGAAAA 57.149 33.333 0.00 0.00 0.00 2.29
471 475 6.456795 AAAGACAAAGAGAAGTGGGAAAAG 57.543 37.500 0.00 0.00 0.00 2.27
472 476 4.464947 AGACAAAGAGAAGTGGGAAAAGG 58.535 43.478 0.00 0.00 0.00 3.11
473 477 4.079730 AGACAAAGAGAAGTGGGAAAAGGT 60.080 41.667 0.00 0.00 0.00 3.50
474 478 4.207955 ACAAAGAGAAGTGGGAAAAGGTC 58.792 43.478 0.00 0.00 0.00 3.85
475 479 4.207165 CAAAGAGAAGTGGGAAAAGGTCA 58.793 43.478 0.00 0.00 0.00 4.02
476 480 4.731313 AAGAGAAGTGGGAAAAGGTCAT 57.269 40.909 0.00 0.00 0.00 3.06
477 481 4.731313 AGAGAAGTGGGAAAAGGTCATT 57.269 40.909 0.00 0.00 0.00 2.57
478 482 5.066913 AGAGAAGTGGGAAAAGGTCATTT 57.933 39.130 0.00 0.00 0.00 2.32
479 483 5.073428 AGAGAAGTGGGAAAAGGTCATTTC 58.927 41.667 0.00 0.00 38.34 2.17
491 495 8.655651 GAAAAGGTCATTTCCATACAACAAAA 57.344 30.769 0.00 0.00 34.03 2.44
492 496 9.103861 GAAAAGGTCATTTCCATACAACAAAAA 57.896 29.630 0.00 0.00 34.03 1.94
493 497 9.625747 AAAAGGTCATTTCCATACAACAAAAAT 57.374 25.926 0.00 0.00 0.00 1.82
494 498 8.606040 AAGGTCATTTCCATACAACAAAAATG 57.394 30.769 0.00 0.00 38.21 2.32
495 499 6.650390 AGGTCATTTCCATACAACAAAAATGC 59.350 34.615 0.00 0.00 37.28 3.56
496 500 6.426328 GGTCATTTCCATACAACAAAAATGCA 59.574 34.615 0.00 0.00 37.28 3.96
497 501 7.290118 GTCATTTCCATACAACAAAAATGCAC 58.710 34.615 0.00 0.00 37.28 4.57
498 502 7.171337 GTCATTTCCATACAACAAAAATGCACT 59.829 33.333 0.00 0.00 37.28 4.40
499 503 7.714377 TCATTTCCATACAACAAAAATGCACTT 59.286 29.630 0.00 0.00 37.28 3.16
500 504 6.841443 TTCCATACAACAAAAATGCACTTG 57.159 33.333 0.00 0.00 0.00 3.16
501 505 5.911752 TCCATACAACAAAAATGCACTTGT 58.088 33.333 5.13 5.13 37.36 3.16
502 506 5.752472 TCCATACAACAAAAATGCACTTGTG 59.248 36.000 10.47 4.06 35.95 3.33
503 507 5.433855 CATACAACAAAAATGCACTTGTGC 58.566 37.500 17.73 17.73 35.95 4.57
504 508 2.677337 ACAACAAAAATGCACTTGTGCC 59.323 40.909 21.01 5.89 35.95 5.01
505 509 2.676839 CAACAAAAATGCACTTGTGCCA 59.323 40.909 21.01 10.86 35.95 4.92
506 510 2.983229 ACAAAAATGCACTTGTGCCAA 58.017 38.095 21.01 5.82 34.52 4.52
507 511 3.543665 ACAAAAATGCACTTGTGCCAAT 58.456 36.364 21.01 7.84 34.52 3.16
508 512 3.312973 ACAAAAATGCACTTGTGCCAATG 59.687 39.130 21.01 14.79 34.52 2.82
509 513 2.914695 AAATGCACTTGTGCCAATGT 57.085 40.000 21.01 3.49 0.00 2.71
510 514 2.443887 AATGCACTTGTGCCAATGTC 57.556 45.000 21.01 0.00 0.00 3.06
511 515 1.330234 ATGCACTTGTGCCAATGTCA 58.670 45.000 21.01 3.05 0.00 3.58
512 516 0.669619 TGCACTTGTGCCAATGTCAG 59.330 50.000 21.01 0.00 0.00 3.51
513 517 0.953727 GCACTTGTGCCAATGTCAGA 59.046 50.000 14.17 0.00 0.00 3.27
514 518 1.337703 GCACTTGTGCCAATGTCAGAA 59.662 47.619 14.17 0.00 0.00 3.02
515 519 2.606308 GCACTTGTGCCAATGTCAGAAG 60.606 50.000 14.17 0.00 39.73 2.85
516 520 2.880268 CACTTGTGCCAATGTCAGAAGA 59.120 45.455 8.15 0.00 37.09 2.87
517 521 3.316029 CACTTGTGCCAATGTCAGAAGAA 59.684 43.478 8.15 0.00 37.09 2.52
518 522 3.953612 ACTTGTGCCAATGTCAGAAGAAA 59.046 39.130 8.15 0.00 37.09 2.52
519 523 3.988379 TGTGCCAATGTCAGAAGAAAC 57.012 42.857 0.00 0.00 0.00 2.78
520 524 2.622942 TGTGCCAATGTCAGAAGAAACC 59.377 45.455 0.00 0.00 0.00 3.27
521 525 2.887152 GTGCCAATGTCAGAAGAAACCT 59.113 45.455 0.00 0.00 0.00 3.50
522 526 2.886523 TGCCAATGTCAGAAGAAACCTG 59.113 45.455 0.00 0.00 0.00 4.00
523 527 3.149196 GCCAATGTCAGAAGAAACCTGA 58.851 45.455 0.00 0.00 38.24 3.86
530 534 4.687901 TCAGAAGAAACCTGACACATCA 57.312 40.909 0.00 0.00 35.89 3.07
531 535 5.233083 TCAGAAGAAACCTGACACATCAT 57.767 39.130 0.00 0.00 35.89 2.45
532 536 6.358974 TCAGAAGAAACCTGACACATCATA 57.641 37.500 0.00 0.00 35.89 2.15
533 537 6.950842 TCAGAAGAAACCTGACACATCATAT 58.049 36.000 0.00 0.00 35.89 1.78
534 538 8.078060 TCAGAAGAAACCTGACACATCATATA 57.922 34.615 0.00 0.00 35.89 0.86
535 539 8.708378 TCAGAAGAAACCTGACACATCATATAT 58.292 33.333 0.00 0.00 35.89 0.86
536 540 9.987272 CAGAAGAAACCTGACACATCATATATA 57.013 33.333 0.00 0.00 33.22 0.86
547 551 9.625747 TGACACATCATATATAAAAGAAAGGCA 57.374 29.630 0.00 0.00 0.00 4.75
548 552 9.884465 GACACATCATATATAAAAGAAAGGCAC 57.116 33.333 0.00 0.00 0.00 5.01
564 568 1.256812 GCACTTATGCCAAAGGGTGT 58.743 50.000 0.01 0.00 46.97 4.16
565 569 1.067635 GCACTTATGCCAAAGGGTGTG 60.068 52.381 0.01 0.00 46.97 3.82
566 570 1.067635 CACTTATGCCAAAGGGTGTGC 60.068 52.381 0.82 0.00 36.17 4.57
567 571 1.255882 CTTATGCCAAAGGGTGTGCA 58.744 50.000 0.00 0.00 37.67 4.57
568 572 1.203052 CTTATGCCAAAGGGTGTGCAG 59.797 52.381 0.00 0.00 37.01 4.41
569 573 1.250154 TATGCCAAAGGGTGTGCAGC 61.250 55.000 0.00 0.00 37.01 5.25
570 574 2.914097 GCCAAAGGGTGTGCAGCT 60.914 61.111 0.00 0.00 36.17 4.24
571 575 1.603455 GCCAAAGGGTGTGCAGCTA 60.603 57.895 0.00 0.00 36.17 3.32
572 576 0.967380 GCCAAAGGGTGTGCAGCTAT 60.967 55.000 0.00 0.00 36.17 2.97
573 577 1.098050 CCAAAGGGTGTGCAGCTATC 58.902 55.000 0.00 0.00 0.00 2.08
574 578 1.614051 CCAAAGGGTGTGCAGCTATCA 60.614 52.381 0.00 0.00 0.00 2.15
575 579 2.372264 CAAAGGGTGTGCAGCTATCAT 58.628 47.619 0.00 0.00 0.00 2.45
576 580 2.338577 AAGGGTGTGCAGCTATCATC 57.661 50.000 0.00 0.00 0.00 2.92
577 581 0.105593 AGGGTGTGCAGCTATCATCG 59.894 55.000 0.00 0.00 0.00 3.84
578 582 0.179073 GGGTGTGCAGCTATCATCGT 60.179 55.000 0.00 0.00 0.00 3.73
579 583 0.933097 GGTGTGCAGCTATCATCGTG 59.067 55.000 0.00 0.00 0.00 4.35
580 584 0.302890 GTGTGCAGCTATCATCGTGC 59.697 55.000 0.00 0.00 36.42 5.34
581 585 0.108233 TGTGCAGCTATCATCGTGCA 60.108 50.000 0.00 0.00 43.50 4.57
582 586 1.224075 GTGCAGCTATCATCGTGCAT 58.776 50.000 0.00 0.00 46.93 3.96
583 587 1.070108 GTGCAGCTATCATCGTGCATG 60.070 52.381 0.00 0.00 46.93 4.06
584 588 0.110328 GCAGCTATCATCGTGCATGC 60.110 55.000 11.82 11.82 35.91 4.06
585 589 0.163146 CAGCTATCATCGTGCATGCG 59.837 55.000 14.09 0.00 31.70 4.73
586 590 0.249615 AGCTATCATCGTGCATGCGT 60.250 50.000 14.09 0.00 31.70 5.24
587 591 1.000274 AGCTATCATCGTGCATGCGTA 60.000 47.619 14.09 0.49 31.70 4.42
588 592 1.388093 GCTATCATCGTGCATGCGTAG 59.612 52.381 14.09 6.87 31.70 3.51
602 606 3.686622 CGTAGCTACCACCATGCAT 57.313 52.632 18.16 0.00 0.00 3.96
603 607 2.812358 CGTAGCTACCACCATGCATA 57.188 50.000 18.16 0.00 0.00 3.14
604 608 2.677199 CGTAGCTACCACCATGCATAG 58.323 52.381 18.16 0.00 0.00 2.23
605 609 2.296190 CGTAGCTACCACCATGCATAGA 59.704 50.000 18.16 0.00 0.00 1.98
606 610 3.243737 CGTAGCTACCACCATGCATAGAA 60.244 47.826 18.16 0.00 0.00 2.10
607 611 3.931907 AGCTACCACCATGCATAGAAA 57.068 42.857 0.00 0.00 0.00 2.52
608 612 4.235079 AGCTACCACCATGCATAGAAAA 57.765 40.909 0.00 0.00 0.00 2.29
609 613 4.796606 AGCTACCACCATGCATAGAAAAT 58.203 39.130 0.00 0.00 0.00 1.82
610 614 4.823989 AGCTACCACCATGCATAGAAAATC 59.176 41.667 0.00 0.00 0.00 2.17
611 615 4.580167 GCTACCACCATGCATAGAAAATCA 59.420 41.667 0.00 0.00 0.00 2.57
612 616 4.989279 ACCACCATGCATAGAAAATCAC 57.011 40.909 0.00 0.00 0.00 3.06
613 617 3.701040 ACCACCATGCATAGAAAATCACC 59.299 43.478 0.00 0.00 0.00 4.02
614 618 3.956199 CCACCATGCATAGAAAATCACCT 59.044 43.478 0.00 0.00 0.00 4.00
615 619 4.037208 CCACCATGCATAGAAAATCACCTC 59.963 45.833 0.00 0.00 0.00 3.85
616 620 4.885907 CACCATGCATAGAAAATCACCTCT 59.114 41.667 0.00 0.00 0.00 3.69
617 621 5.008415 CACCATGCATAGAAAATCACCTCTC 59.992 44.000 0.00 0.00 0.00 3.20
675 1061 6.578944 GGAGTTGTGTTTCCTACCAATTTTT 58.421 36.000 0.00 0.00 0.00 1.94
862 1248 7.656707 AACAGAATTGCCATGTGAAAATTAC 57.343 32.000 0.00 0.00 0.00 1.89
863 1249 6.996509 ACAGAATTGCCATGTGAAAATTACT 58.003 32.000 0.00 0.00 0.00 2.24
1029 1447 4.457466 AGGTCGTAGTTTTGATTGTTGGT 58.543 39.130 0.00 0.00 0.00 3.67
1113 1532 1.300971 TGAGCGTGAGAATTGCAGCC 61.301 55.000 0.00 0.00 0.00 4.85
1211 1630 1.746517 GTACCCAGCAGATACCCCG 59.253 63.158 0.00 0.00 0.00 5.73
1215 1634 1.410850 CCCAGCAGATACCCCGACAT 61.411 60.000 0.00 0.00 0.00 3.06
1216 1635 1.338107 CCAGCAGATACCCCGACATA 58.662 55.000 0.00 0.00 0.00 2.29
1275 1703 1.620323 CATCTGGGAGATGCATACGGA 59.380 52.381 0.00 1.54 44.69 4.69
1318 1748 7.844009 TCGAGGACCTTACAAAGTATTACAAT 58.156 34.615 0.00 0.00 0.00 2.71
1487 1918 2.666098 GCCACATACCGGGTCTGGT 61.666 63.158 15.92 6.71 46.26 4.00
1769 2231 2.794820 GAAGAGAAGCACCGCAGCCT 62.795 60.000 0.00 0.00 34.23 4.58
2282 2749 2.052690 CACCGACGATCACTCCCCT 61.053 63.158 0.00 0.00 0.00 4.79
2290 2759 4.753662 TCACTCCCCTCCGTCGGG 62.754 72.222 12.29 1.87 44.27 5.14
2485 2954 4.999310 TCACTATCCATCCGAGGTATCTT 58.001 43.478 0.00 0.00 0.00 2.40
2601 3070 3.506810 CGAAGTTTCTTGTTGTGGCAAA 58.493 40.909 0.00 0.00 0.00 3.68
2645 3114 2.930019 CAGTGGTCCCTGGCCTGA 60.930 66.667 11.88 0.00 0.00 3.86
2709 3178 0.539986 GGCATTGACTACTCCGGGAA 59.460 55.000 0.00 0.00 0.00 3.97
2917 3398 3.818295 TGTTTGGTTGGCCTAGGTAAT 57.182 42.857 11.31 0.00 35.27 1.89
2941 3422 1.471119 TTGGATAACGTCGCTCCTCT 58.529 50.000 11.06 0.00 0.00 3.69
3018 3499 1.488393 GCTATGCTCCTCCCTTTCAGT 59.512 52.381 0.00 0.00 0.00 3.41
3074 3555 0.596577 CGCCGCCTACTCAGCTAATA 59.403 55.000 0.00 0.00 0.00 0.98
3176 3657 3.857854 CGTGCCGCTAGCTGCTTG 61.858 66.667 28.01 17.84 44.23 4.01
3275 3763 0.823356 ACCATTTGAGCGGCTTGTGT 60.823 50.000 2.97 0.00 0.00 3.72
3298 3787 3.057337 CGGGAACAGAAGACGGGT 58.943 61.111 0.00 0.00 0.00 5.28
3601 4090 6.617371 AGGGATGACACTAGTCCATTATCTTT 59.383 38.462 8.27 0.00 44.33 2.52
3986 4478 3.074412 ACAAATTCGTGGCTCAAGGTAG 58.926 45.455 0.00 0.00 0.00 3.18
3996 4488 6.097839 TCGTGGCTCAAGGTAGTAAGATAAAT 59.902 38.462 0.00 0.00 0.00 1.40
4122 4616 1.681825 GACGGCGTTGTTGGAAATTC 58.318 50.000 16.19 0.00 0.00 2.17
4126 4620 1.067821 GGCGTTGTTGGAAATTCACCA 59.932 47.619 0.00 0.94 35.47 4.17
4129 6048 3.371168 CGTTGTTGGAAATTCACCACAG 58.629 45.455 4.17 0.00 37.13 3.66
4147 6066 5.760253 ACCACAGGATCGATCACATAAAATC 59.240 40.000 25.93 6.11 0.00 2.17
4148 6067 5.759763 CCACAGGATCGATCACATAAAATCA 59.240 40.000 25.93 0.00 0.00 2.57
4245 6164 8.731275 TTTTCTCTAAATCTCACAGTGTTCAA 57.269 30.769 0.00 0.00 0.00 2.69
4246 6165 8.908786 TTTCTCTAAATCTCACAGTGTTCAAT 57.091 30.769 0.00 0.00 0.00 2.57
4247 6166 7.895975 TCTCTAAATCTCACAGTGTTCAATG 57.104 36.000 0.00 0.00 0.00 2.82
4248 6167 7.445121 TCTCTAAATCTCACAGTGTTCAATGT 58.555 34.615 0.00 0.00 0.00 2.71
4249 6168 7.600375 TCTCTAAATCTCACAGTGTTCAATGTC 59.400 37.037 2.91 0.00 0.00 3.06
4250 6169 7.445121 TCTAAATCTCACAGTGTTCAATGTCT 58.555 34.615 2.91 0.00 0.00 3.41
4251 6170 6.551385 AAATCTCACAGTGTTCAATGTCTC 57.449 37.500 2.91 0.00 0.00 3.36
4252 6171 4.670896 TCTCACAGTGTTCAATGTCTCA 57.329 40.909 2.91 0.00 0.00 3.27
4253 6172 5.022282 TCTCACAGTGTTCAATGTCTCAA 57.978 39.130 2.91 0.00 0.00 3.02
4254 6173 5.427378 TCTCACAGTGTTCAATGTCTCAAA 58.573 37.500 2.91 0.00 0.00 2.69
4255 6174 5.879777 TCTCACAGTGTTCAATGTCTCAAAA 59.120 36.000 2.91 0.00 0.00 2.44
4256 6175 6.543465 TCTCACAGTGTTCAATGTCTCAAAAT 59.457 34.615 2.91 0.00 0.00 1.82
4257 6176 7.714813 TCTCACAGTGTTCAATGTCTCAAAATA 59.285 33.333 2.91 0.00 0.00 1.40
4264 6183 9.301153 GTGTTCAATGTCTCAAAATACAAAACT 57.699 29.630 0.00 0.00 0.00 2.66
4277 6196 0.248458 CAAAACTCACGCACACACCC 60.248 55.000 0.00 0.00 0.00 4.61
4299 6218 5.093457 CCGTGTATATATAAGTGCAGGTCG 58.907 45.833 0.00 0.00 0.00 4.79
4383 6302 1.548719 ACTGCTATACGTCCAGCACAA 59.451 47.619 17.39 0.94 42.68 3.33
4410 6329 2.686915 ACACGGCCATGTACTACTACTC 59.313 50.000 0.55 0.00 0.00 2.59
4456 6375 8.526147 TCTACCTAATCTAATTATACGGCAACC 58.474 37.037 0.00 0.00 0.00 3.77
4493 6412 8.053653 CCTAAATAAACAAAACTCAAACGCAAC 58.946 33.333 0.00 0.00 0.00 4.17
4593 6512 2.102578 GGCAAATGGGCTCTATTGTGT 58.897 47.619 4.26 0.00 39.42 3.72
4708 6993 1.757682 TTTGACTGTTTTCTGCCGGT 58.242 45.000 1.90 0.00 0.00 5.28
4866 7152 0.037590 TAAACATGCAGGCTCGGGTT 59.962 50.000 0.00 0.00 0.00 4.11
4913 7199 3.416156 GTCAGTGCTTCCCAAATCTTCT 58.584 45.455 0.00 0.00 0.00 2.85
4924 7210 7.578310 TTCCCAAATCTTCTCATGATCATTC 57.422 36.000 5.16 0.00 0.00 2.67
4934 7220 7.344093 TCTTCTCATGATCATTCTAAGTCTGGT 59.656 37.037 5.16 0.00 0.00 4.00
4962 7248 2.553028 GCCTGAAAGACCAGACCATGAA 60.553 50.000 0.00 0.00 36.29 2.57
4967 7253 0.898320 AGACCAGACCATGAAGTCCG 59.102 55.000 0.00 0.00 37.49 4.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
50 52 5.828299 TTCTTGTGAACGTTTCAAATCCT 57.172 34.783 16.40 0.00 42.15 3.24
56 58 6.904498 TCTTCTTTTTCTTGTGAACGTTTCA 58.096 32.000 0.46 2.42 37.33 2.69
58 60 7.650104 TGTTTCTTCTTTTTCTTGTGAACGTTT 59.350 29.630 0.46 0.00 31.02 3.60
206 210 9.083422 TGTTACATTTCCCATCTAAATTCACAA 57.917 29.630 0.00 0.00 0.00 3.33
207 211 8.642935 TGTTACATTTCCCATCTAAATTCACA 57.357 30.769 0.00 0.00 0.00 3.58
208 212 8.956426 TCTGTTACATTTCCCATCTAAATTCAC 58.044 33.333 0.00 0.00 0.00 3.18
209 213 9.527157 TTCTGTTACATTTCCCATCTAAATTCA 57.473 29.630 0.00 0.00 0.00 2.57
212 216 8.917088 CCATTCTGTTACATTTCCCATCTAAAT 58.083 33.333 0.00 0.00 0.00 1.40
213 217 8.112822 TCCATTCTGTTACATTTCCCATCTAAA 58.887 33.333 0.00 0.00 0.00 1.85
214 218 7.638444 TCCATTCTGTTACATTTCCCATCTAA 58.362 34.615 0.00 0.00 0.00 2.10
215 219 7.206789 TCCATTCTGTTACATTTCCCATCTA 57.793 36.000 0.00 0.00 0.00 1.98
216 220 6.078456 TCCATTCTGTTACATTTCCCATCT 57.922 37.500 0.00 0.00 0.00 2.90
217 221 6.966534 ATCCATTCTGTTACATTTCCCATC 57.033 37.500 0.00 0.00 0.00 3.51
218 222 7.180766 ACAAATCCATTCTGTTACATTTCCCAT 59.819 33.333 0.00 0.00 0.00 4.00
219 223 6.496565 ACAAATCCATTCTGTTACATTTCCCA 59.503 34.615 0.00 0.00 0.00 4.37
220 224 6.935167 ACAAATCCATTCTGTTACATTTCCC 58.065 36.000 0.00 0.00 0.00 3.97
225 229 9.479549 AGGAAATACAAATCCATTCTGTTACAT 57.520 29.630 0.00 0.00 38.23 2.29
226 230 8.877864 AGGAAATACAAATCCATTCTGTTACA 57.122 30.769 0.00 0.00 38.23 2.41
227 231 8.406297 GGAGGAAATACAAATCCATTCTGTTAC 58.594 37.037 0.00 0.00 38.23 2.50
228 232 8.336235 AGGAGGAAATACAAATCCATTCTGTTA 58.664 33.333 0.00 0.00 38.23 2.41
229 233 7.184862 AGGAGGAAATACAAATCCATTCTGTT 58.815 34.615 0.00 0.00 38.23 3.16
230 234 6.735556 AGGAGGAAATACAAATCCATTCTGT 58.264 36.000 0.00 0.00 38.23 3.41
231 235 8.752005 TTAGGAGGAAATACAAATCCATTCTG 57.248 34.615 0.00 0.00 38.23 3.02
232 236 9.942526 AATTAGGAGGAAATACAAATCCATTCT 57.057 29.630 0.00 0.00 38.23 2.40
315 319 4.824289 TGGTCCAAGGTTACGATACTTTC 58.176 43.478 0.00 0.00 0.00 2.62
316 320 4.828829 CTGGTCCAAGGTTACGATACTTT 58.171 43.478 0.00 0.00 0.00 2.66
317 321 3.369157 GCTGGTCCAAGGTTACGATACTT 60.369 47.826 0.00 0.00 0.00 2.24
318 322 2.167900 GCTGGTCCAAGGTTACGATACT 59.832 50.000 0.00 0.00 0.00 2.12
319 323 2.547826 GCTGGTCCAAGGTTACGATAC 58.452 52.381 0.00 0.00 0.00 2.24
320 324 1.483415 GGCTGGTCCAAGGTTACGATA 59.517 52.381 0.00 0.00 34.01 2.92
321 325 0.252197 GGCTGGTCCAAGGTTACGAT 59.748 55.000 0.00 0.00 34.01 3.73
322 326 1.122632 TGGCTGGTCCAAGGTTACGA 61.123 55.000 0.00 0.00 43.21 3.43
323 327 0.673644 CTGGCTGGTCCAAGGTTACG 60.674 60.000 0.00 0.00 46.01 3.18
324 328 0.322546 CCTGGCTGGTCCAAGGTTAC 60.323 60.000 1.62 0.00 46.01 2.50
325 329 2.074967 CCTGGCTGGTCCAAGGTTA 58.925 57.895 1.62 0.00 46.01 2.85
326 330 2.846532 CCTGGCTGGTCCAAGGTT 59.153 61.111 1.62 0.00 46.01 3.50
327 331 3.971702 GCCTGGCTGGTCCAAGGT 61.972 66.667 12.43 0.00 46.01 3.50
328 332 3.512154 TTGCCTGGCTGGTCCAAGG 62.512 63.158 21.03 3.92 46.01 3.61
329 333 1.975407 CTTGCCTGGCTGGTCCAAG 60.975 63.158 21.03 9.91 46.01 3.61
330 334 2.115910 CTTGCCTGGCTGGTCCAA 59.884 61.111 21.03 3.36 46.01 3.53
331 335 4.666253 GCTTGCCTGGCTGGTCCA 62.666 66.667 21.03 0.00 44.18 4.02
332 336 4.666253 TGCTTGCCTGGCTGGTCC 62.666 66.667 21.03 4.50 38.35 4.46
333 337 2.202395 TTTGCTTGCCTGGCTGGTC 61.202 57.895 21.03 7.01 38.35 4.02
334 338 2.123338 TTTGCTTGCCTGGCTGGT 60.123 55.556 21.03 0.00 38.35 4.00
335 339 2.341176 GTTTGCTTGCCTGGCTGG 59.659 61.111 21.03 13.12 39.35 4.85
336 340 1.006571 CTGTTTGCTTGCCTGGCTG 60.007 57.895 21.03 13.54 0.00 4.85
337 341 2.205152 CCTGTTTGCTTGCCTGGCT 61.205 57.895 21.03 0.00 0.00 4.75
338 342 2.341176 CCTGTTTGCTTGCCTGGC 59.659 61.111 12.87 12.87 0.00 4.85
339 343 2.030490 TTGCCTGTTTGCTTGCCTGG 62.030 55.000 0.00 0.00 0.00 4.45
340 344 0.034337 ATTGCCTGTTTGCTTGCCTG 59.966 50.000 0.00 0.00 0.00 4.85
341 345 0.760572 AATTGCCTGTTTGCTTGCCT 59.239 45.000 0.00 0.00 0.00 4.75
342 346 2.453983 TAATTGCCTGTTTGCTTGCC 57.546 45.000 0.00 0.00 0.00 4.52
343 347 2.094734 GCATAATTGCCTGTTTGCTTGC 59.905 45.455 0.00 0.00 43.38 4.01
364 368 4.746611 CAGTCTTTTAGCTTGCCTTTTTGG 59.253 41.667 0.00 0.00 39.35 3.28
365 369 5.232838 CACAGTCTTTTAGCTTGCCTTTTTG 59.767 40.000 0.00 0.00 0.00 2.44
366 370 5.127031 TCACAGTCTTTTAGCTTGCCTTTTT 59.873 36.000 0.00 0.00 0.00 1.94
367 371 4.644685 TCACAGTCTTTTAGCTTGCCTTTT 59.355 37.500 0.00 0.00 0.00 2.27
368 372 4.207165 TCACAGTCTTTTAGCTTGCCTTT 58.793 39.130 0.00 0.00 0.00 3.11
369 373 3.817647 CTCACAGTCTTTTAGCTTGCCTT 59.182 43.478 0.00 0.00 0.00 4.35
370 374 3.071602 TCTCACAGTCTTTTAGCTTGCCT 59.928 43.478 0.00 0.00 0.00 4.75
371 375 3.403038 TCTCACAGTCTTTTAGCTTGCC 58.597 45.455 0.00 0.00 0.00 4.52
372 376 4.513318 ACTTCTCACAGTCTTTTAGCTTGC 59.487 41.667 0.00 0.00 0.00 4.01
373 377 5.755375 TCACTTCTCACAGTCTTTTAGCTTG 59.245 40.000 0.00 0.00 0.00 4.01
374 378 5.918608 TCACTTCTCACAGTCTTTTAGCTT 58.081 37.500 0.00 0.00 0.00 3.74
375 379 5.303078 TCTCACTTCTCACAGTCTTTTAGCT 59.697 40.000 0.00 0.00 0.00 3.32
376 380 5.533482 TCTCACTTCTCACAGTCTTTTAGC 58.467 41.667 0.00 0.00 0.00 3.09
377 381 6.976088 TCTCTCACTTCTCACAGTCTTTTAG 58.024 40.000 0.00 0.00 0.00 1.85
378 382 6.961360 TCTCTCACTTCTCACAGTCTTTTA 57.039 37.500 0.00 0.00 0.00 1.52
379 383 5.860941 TCTCTCACTTCTCACAGTCTTTT 57.139 39.130 0.00 0.00 0.00 2.27
380 384 5.221422 CCTTCTCTCACTTCTCACAGTCTTT 60.221 44.000 0.00 0.00 0.00 2.52
381 385 4.280677 CCTTCTCTCACTTCTCACAGTCTT 59.719 45.833 0.00 0.00 0.00 3.01
382 386 3.826157 CCTTCTCTCACTTCTCACAGTCT 59.174 47.826 0.00 0.00 0.00 3.24
383 387 3.613910 GCCTTCTCTCACTTCTCACAGTC 60.614 52.174 0.00 0.00 0.00 3.51
384 388 2.298729 GCCTTCTCTCACTTCTCACAGT 59.701 50.000 0.00 0.00 0.00 3.55
385 389 2.353605 GGCCTTCTCTCACTTCTCACAG 60.354 54.545 0.00 0.00 0.00 3.66
386 390 1.620819 GGCCTTCTCTCACTTCTCACA 59.379 52.381 0.00 0.00 0.00 3.58
387 391 1.066502 GGGCCTTCTCTCACTTCTCAC 60.067 57.143 0.84 0.00 0.00 3.51
388 392 1.203237 AGGGCCTTCTCTCACTTCTCA 60.203 52.381 0.00 0.00 0.00 3.27
389 393 1.567357 AGGGCCTTCTCTCACTTCTC 58.433 55.000 0.00 0.00 0.00 2.87
390 394 2.037385 AAGGGCCTTCTCTCACTTCT 57.963 50.000 14.48 0.00 0.00 2.85
391 395 2.304470 AGAAAGGGCCTTCTCTCACTTC 59.696 50.000 21.20 10.73 29.31 3.01
392 396 2.343625 AGAAAGGGCCTTCTCTCACTT 58.656 47.619 21.20 0.00 29.31 3.16
393 397 2.037385 AGAAAGGGCCTTCTCTCACT 57.963 50.000 21.20 0.72 29.31 3.41
394 398 2.567615 TGTAGAAAGGGCCTTCTCTCAC 59.432 50.000 24.67 20.77 36.95 3.51
395 399 2.567615 GTGTAGAAAGGGCCTTCTCTCA 59.432 50.000 24.67 20.12 36.95 3.27
396 400 2.567615 TGTGTAGAAAGGGCCTTCTCTC 59.432 50.000 24.67 17.70 36.95 3.20
397 401 2.621070 TGTGTAGAAAGGGCCTTCTCT 58.379 47.619 21.20 23.35 36.95 3.10
398 402 3.075148 GTTGTGTAGAAAGGGCCTTCTC 58.925 50.000 21.20 18.01 36.95 2.87
399 403 2.550208 CGTTGTGTAGAAAGGGCCTTCT 60.550 50.000 21.20 19.27 39.09 2.85
400 404 1.804748 CGTTGTGTAGAAAGGGCCTTC 59.195 52.381 21.20 13.05 0.00 3.46
401 405 1.418637 TCGTTGTGTAGAAAGGGCCTT 59.581 47.619 14.48 14.48 0.00 4.35
402 406 1.053424 TCGTTGTGTAGAAAGGGCCT 58.947 50.000 0.00 0.00 0.00 5.19
403 407 1.886886 TTCGTTGTGTAGAAAGGGCC 58.113 50.000 0.00 0.00 0.00 5.80
404 408 3.314357 ACTTTTCGTTGTGTAGAAAGGGC 59.686 43.478 5.35 0.00 37.64 5.19
405 409 4.573201 TGACTTTTCGTTGTGTAGAAAGGG 59.427 41.667 5.35 0.44 37.64 3.95
406 410 5.499047 GTGACTTTTCGTTGTGTAGAAAGG 58.501 41.667 0.00 0.00 37.61 3.11
407 411 5.188194 CGTGACTTTTCGTTGTGTAGAAAG 58.812 41.667 0.00 0.00 37.61 2.62
408 412 4.626604 ACGTGACTTTTCGTTGTGTAGAAA 59.373 37.500 0.00 0.00 36.93 2.52
409 413 4.031991 CACGTGACTTTTCGTTGTGTAGAA 59.968 41.667 10.90 0.00 38.23 2.10
410 414 3.548668 CACGTGACTTTTCGTTGTGTAGA 59.451 43.478 10.90 0.00 38.23 2.59
411 415 3.305094 ACACGTGACTTTTCGTTGTGTAG 59.695 43.478 25.01 0.00 38.23 2.74
412 416 3.252400 ACACGTGACTTTTCGTTGTGTA 58.748 40.909 25.01 0.00 38.23 2.90
413 417 2.070783 ACACGTGACTTTTCGTTGTGT 58.929 42.857 25.01 0.00 38.23 3.72
414 418 2.092995 TGACACGTGACTTTTCGTTGTG 59.907 45.455 25.01 0.00 38.23 3.33
415 419 2.339418 TGACACGTGACTTTTCGTTGT 58.661 42.857 25.01 0.00 38.23 3.32
416 420 3.377434 TTGACACGTGACTTTTCGTTG 57.623 42.857 25.01 0.00 38.23 4.10
417 421 4.399978 CTTTTGACACGTGACTTTTCGTT 58.600 39.130 25.01 0.00 38.23 3.85
418 422 3.181514 CCTTTTGACACGTGACTTTTCGT 60.182 43.478 25.01 0.00 40.99 3.85
419 423 3.062909 TCCTTTTGACACGTGACTTTTCG 59.937 43.478 25.01 5.67 0.00 3.46
420 424 4.609691 TCCTTTTGACACGTGACTTTTC 57.390 40.909 25.01 9.50 0.00 2.29
421 425 6.687081 TTATCCTTTTGACACGTGACTTTT 57.313 33.333 25.01 0.00 0.00 2.27
422 426 6.877611 ATTATCCTTTTGACACGTGACTTT 57.122 33.333 25.01 0.00 0.00 2.66
423 427 7.972832 TTATTATCCTTTTGACACGTGACTT 57.027 32.000 25.01 0.00 0.00 3.01
424 428 7.972832 TTTATTATCCTTTTGACACGTGACT 57.027 32.000 25.01 0.00 0.00 3.41
425 429 9.113876 CTTTTTATTATCCTTTTGACACGTGAC 57.886 33.333 25.01 17.68 0.00 3.67
426 430 9.058174 TCTTTTTATTATCCTTTTGACACGTGA 57.942 29.630 25.01 0.00 0.00 4.35
427 431 9.113876 GTCTTTTTATTATCCTTTTGACACGTG 57.886 33.333 15.48 15.48 0.00 4.49
428 432 8.842280 TGTCTTTTTATTATCCTTTTGACACGT 58.158 29.630 0.00 0.00 0.00 4.49
429 433 9.672086 TTGTCTTTTTATTATCCTTTTGACACG 57.328 29.630 0.00 0.00 31.71 4.49
441 445 9.807921 TCCCACTTCTCTTTGTCTTTTTATTAT 57.192 29.630 0.00 0.00 0.00 1.28
442 446 9.635404 TTCCCACTTCTCTTTGTCTTTTTATTA 57.365 29.630 0.00 0.00 0.00 0.98
443 447 8.533569 TTCCCACTTCTCTTTGTCTTTTTATT 57.466 30.769 0.00 0.00 0.00 1.40
444 448 8.533569 TTTCCCACTTCTCTTTGTCTTTTTAT 57.466 30.769 0.00 0.00 0.00 1.40
445 449 7.948034 TTTCCCACTTCTCTTTGTCTTTTTA 57.052 32.000 0.00 0.00 0.00 1.52
446 450 6.850752 TTTCCCACTTCTCTTTGTCTTTTT 57.149 33.333 0.00 0.00 0.00 1.94
447 451 6.127338 CCTTTTCCCACTTCTCTTTGTCTTTT 60.127 38.462 0.00 0.00 0.00 2.27
448 452 5.360999 CCTTTTCCCACTTCTCTTTGTCTTT 59.639 40.000 0.00 0.00 0.00 2.52
449 453 4.889995 CCTTTTCCCACTTCTCTTTGTCTT 59.110 41.667 0.00 0.00 0.00 3.01
450 454 4.079730 ACCTTTTCCCACTTCTCTTTGTCT 60.080 41.667 0.00 0.00 0.00 3.41
451 455 4.207955 ACCTTTTCCCACTTCTCTTTGTC 58.792 43.478 0.00 0.00 0.00 3.18
452 456 4.207955 GACCTTTTCCCACTTCTCTTTGT 58.792 43.478 0.00 0.00 0.00 2.83
453 457 4.207165 TGACCTTTTCCCACTTCTCTTTG 58.793 43.478 0.00 0.00 0.00 2.77
454 458 4.519906 TGACCTTTTCCCACTTCTCTTT 57.480 40.909 0.00 0.00 0.00 2.52
455 459 4.731313 ATGACCTTTTCCCACTTCTCTT 57.269 40.909 0.00 0.00 0.00 2.85
456 460 4.731313 AATGACCTTTTCCCACTTCTCT 57.269 40.909 0.00 0.00 0.00 3.10
457 461 4.218635 GGAAATGACCTTTTCCCACTTCTC 59.781 45.833 13.45 0.00 45.95 2.87
458 462 4.152647 GGAAATGACCTTTTCCCACTTCT 58.847 43.478 13.45 0.00 45.95 2.85
459 463 4.521130 GGAAATGACCTTTTCCCACTTC 57.479 45.455 13.45 0.00 45.95 3.01
466 470 8.655651 TTTTGTTGTATGGAAATGACCTTTTC 57.344 30.769 0.00 0.00 35.34 2.29
467 471 9.625747 ATTTTTGTTGTATGGAAATGACCTTTT 57.374 25.926 0.00 0.00 0.00 2.27
468 472 9.054922 CATTTTTGTTGTATGGAAATGACCTTT 57.945 29.630 0.00 0.00 39.05 3.11
469 473 7.173047 GCATTTTTGTTGTATGGAAATGACCTT 59.827 33.333 10.33 0.00 39.05 3.50
470 474 6.650390 GCATTTTTGTTGTATGGAAATGACCT 59.350 34.615 10.33 0.00 39.05 3.85
471 475 6.426328 TGCATTTTTGTTGTATGGAAATGACC 59.574 34.615 10.33 0.00 39.05 4.02
472 476 7.171337 AGTGCATTTTTGTTGTATGGAAATGAC 59.829 33.333 10.33 6.50 39.05 3.06
473 477 7.215789 AGTGCATTTTTGTTGTATGGAAATGA 58.784 30.769 10.33 0.00 39.05 2.57
474 478 7.424227 AGTGCATTTTTGTTGTATGGAAATG 57.576 32.000 0.00 0.00 39.48 2.32
475 479 7.498570 ACAAGTGCATTTTTGTTGTATGGAAAT 59.501 29.630 7.99 0.00 34.00 2.17
476 480 6.820656 ACAAGTGCATTTTTGTTGTATGGAAA 59.179 30.769 7.99 0.00 34.00 3.13
477 481 6.257411 CACAAGTGCATTTTTGTTGTATGGAA 59.743 34.615 10.36 0.00 35.46 3.53
478 482 5.752472 CACAAGTGCATTTTTGTTGTATGGA 59.248 36.000 10.36 0.00 35.46 3.41
479 483 5.976586 CACAAGTGCATTTTTGTTGTATGG 58.023 37.500 10.36 0.00 35.46 2.74
497 501 8.869764 CAGGTTTCTTCTGACATTGGCACAAG 62.870 46.154 1.33 1.33 37.78 3.16
498 502 7.177063 CAGGTTTCTTCTGACATTGGCACAA 62.177 44.000 0.00 0.00 37.78 3.33
499 503 2.622942 GGTTTCTTCTGACATTGGCACA 59.377 45.455 0.00 0.00 0.00 4.57
500 504 2.887152 AGGTTTCTTCTGACATTGGCAC 59.113 45.455 0.00 0.00 0.00 5.01
501 505 2.886523 CAGGTTTCTTCTGACATTGGCA 59.113 45.455 0.00 0.00 34.36 4.92
502 506 3.149196 TCAGGTTTCTTCTGACATTGGC 58.851 45.455 0.00 0.00 36.46 4.52
509 513 4.687901 TGATGTGTCAGGTTTCTTCTGA 57.312 40.909 0.00 0.00 38.75 3.27
510 514 8.899427 ATATATGATGTGTCAGGTTTCTTCTG 57.101 34.615 0.00 0.00 37.87 3.02
521 525 9.625747 TGCCTTTCTTTTATATATGATGTGTCA 57.374 29.630 0.00 0.00 39.04 3.58
522 526 9.884465 GTGCCTTTCTTTTATATATGATGTGTC 57.116 33.333 0.00 0.00 0.00 3.67
523 527 9.632638 AGTGCCTTTCTTTTATATATGATGTGT 57.367 29.630 0.00 0.00 0.00 3.72
546 550 1.067635 GCACACCCTTTGGCATAAGTG 60.068 52.381 0.00 0.00 33.59 3.16
547 551 1.256812 GCACACCCTTTGGCATAAGT 58.743 50.000 0.00 0.00 33.59 2.24
548 552 1.203052 CTGCACACCCTTTGGCATAAG 59.797 52.381 0.00 0.00 32.85 1.73
549 553 1.255882 CTGCACACCCTTTGGCATAA 58.744 50.000 0.00 0.00 32.85 1.90
550 554 1.250154 GCTGCACACCCTTTGGCATA 61.250 55.000 0.00 0.00 32.85 3.14
551 555 2.576832 GCTGCACACCCTTTGGCAT 61.577 57.895 0.00 0.00 32.85 4.40
552 556 2.350511 TAGCTGCACACCCTTTGGCA 62.351 55.000 1.02 0.00 33.59 4.92
553 557 0.967380 ATAGCTGCACACCCTTTGGC 60.967 55.000 1.02 0.00 33.59 4.52
554 558 1.098050 GATAGCTGCACACCCTTTGG 58.902 55.000 1.02 0.00 37.80 3.28
555 559 1.825090 TGATAGCTGCACACCCTTTG 58.175 50.000 1.02 0.00 0.00 2.77
556 560 2.648059 GATGATAGCTGCACACCCTTT 58.352 47.619 1.02 0.00 0.00 3.11
557 561 1.473965 CGATGATAGCTGCACACCCTT 60.474 52.381 1.02 0.00 0.00 3.95
558 562 0.105593 CGATGATAGCTGCACACCCT 59.894 55.000 1.02 0.00 0.00 4.34
559 563 0.179073 ACGATGATAGCTGCACACCC 60.179 55.000 1.02 0.00 0.00 4.61
560 564 0.933097 CACGATGATAGCTGCACACC 59.067 55.000 1.02 0.00 0.00 4.16
561 565 0.302890 GCACGATGATAGCTGCACAC 59.697 55.000 1.02 0.00 0.00 3.82
562 566 0.108233 TGCACGATGATAGCTGCACA 60.108 50.000 1.02 0.00 34.73 4.57
563 567 1.070108 CATGCACGATGATAGCTGCAC 60.070 52.381 1.02 0.00 42.22 4.57
564 568 1.223187 CATGCACGATGATAGCTGCA 58.777 50.000 1.02 0.00 43.50 4.41
565 569 0.110328 GCATGCACGATGATAGCTGC 60.110 55.000 14.21 0.00 33.31 5.25
566 570 0.163146 CGCATGCACGATGATAGCTG 59.837 55.000 19.57 0.00 33.31 4.24
567 571 0.249615 ACGCATGCACGATGATAGCT 60.250 50.000 19.57 0.00 33.31 3.32
568 572 1.388093 CTACGCATGCACGATGATAGC 59.612 52.381 19.57 0.00 33.31 2.97
569 573 1.388093 GCTACGCATGCACGATGATAG 59.612 52.381 19.57 7.97 33.31 2.08
570 574 1.000274 AGCTACGCATGCACGATGATA 60.000 47.619 19.57 0.00 33.31 2.15
571 575 0.249615 AGCTACGCATGCACGATGAT 60.250 50.000 19.57 0.00 33.31 2.45
572 576 0.383949 TAGCTACGCATGCACGATGA 59.616 50.000 19.57 0.00 33.31 2.92
573 577 0.504384 GTAGCTACGCATGCACGATG 59.496 55.000 19.57 2.94 36.70 3.84
574 578 0.597637 GGTAGCTACGCATGCACGAT 60.598 55.000 19.57 6.18 36.70 3.73
575 579 1.226859 GGTAGCTACGCATGCACGA 60.227 57.895 19.57 0.31 36.70 4.35
576 580 1.518352 TGGTAGCTACGCATGCACG 60.518 57.895 19.57 4.59 39.50 5.34
577 581 1.429148 GGTGGTAGCTACGCATGCAC 61.429 60.000 19.57 17.28 0.00 4.57
578 582 1.153449 GGTGGTAGCTACGCATGCA 60.153 57.895 19.57 6.73 0.00 3.96
579 583 0.532862 ATGGTGGTAGCTACGCATGC 60.533 55.000 17.48 7.91 0.00 4.06
580 584 1.220529 CATGGTGGTAGCTACGCATG 58.779 55.000 17.48 13.45 0.00 4.06
581 585 0.532862 GCATGGTGGTAGCTACGCAT 60.533 55.000 17.48 6.90 0.00 4.73
582 586 1.153449 GCATGGTGGTAGCTACGCA 60.153 57.895 17.48 13.36 0.00 5.24
583 587 0.532862 ATGCATGGTGGTAGCTACGC 60.533 55.000 17.48 13.89 0.00 4.42
584 588 2.296190 TCTATGCATGGTGGTAGCTACG 59.704 50.000 17.48 3.95 0.00 3.51
585 589 4.336889 TTCTATGCATGGTGGTAGCTAC 57.663 45.455 15.88 15.88 0.00 3.58
586 590 5.366482 TTTTCTATGCATGGTGGTAGCTA 57.634 39.130 10.16 0.00 0.00 3.32
587 591 3.931907 TTTCTATGCATGGTGGTAGCT 57.068 42.857 10.16 0.00 0.00 3.32
588 592 4.580167 TGATTTTCTATGCATGGTGGTAGC 59.420 41.667 10.16 0.00 0.00 3.58
589 593 5.009010 GGTGATTTTCTATGCATGGTGGTAG 59.991 44.000 10.16 0.00 0.00 3.18
590 594 4.887071 GGTGATTTTCTATGCATGGTGGTA 59.113 41.667 10.16 0.00 0.00 3.25
591 595 3.701040 GGTGATTTTCTATGCATGGTGGT 59.299 43.478 10.16 0.00 0.00 4.16
592 596 3.956199 AGGTGATTTTCTATGCATGGTGG 59.044 43.478 10.16 0.00 0.00 4.61
593 597 4.885907 AGAGGTGATTTTCTATGCATGGTG 59.114 41.667 10.16 0.00 0.00 4.17
594 598 5.104193 AGAGAGGTGATTTTCTATGCATGGT 60.104 40.000 10.16 0.00 0.00 3.55
595 599 5.374921 AGAGAGGTGATTTTCTATGCATGG 58.625 41.667 10.16 6.58 0.00 3.66
596 600 8.504815 CAATAGAGAGGTGATTTTCTATGCATG 58.495 37.037 10.16 0.00 34.14 4.06
597 601 8.216423 ACAATAGAGAGGTGATTTTCTATGCAT 58.784 33.333 3.79 3.79 34.14 3.96
598 602 7.496920 CACAATAGAGAGGTGATTTTCTATGCA 59.503 37.037 0.00 0.00 34.14 3.96
599 603 7.712639 TCACAATAGAGAGGTGATTTTCTATGC 59.287 37.037 0.00 0.00 36.69 3.14
600 604 9.605275 TTCACAATAGAGAGGTGATTTTCTATG 57.395 33.333 0.00 0.00 40.84 2.23
603 607 9.525826 AAATTCACAATAGAGAGGTGATTTTCT 57.474 29.630 0.00 0.00 39.18 2.52
608 612 9.775854 CATCTAAATTCACAATAGAGAGGTGAT 57.224 33.333 0.00 0.00 40.84 3.06
609 613 8.206867 CCATCTAAATTCACAATAGAGAGGTGA 58.793 37.037 0.00 0.00 39.60 4.02
610 614 7.443575 CCCATCTAAATTCACAATAGAGAGGTG 59.556 40.741 0.00 0.00 0.00 4.00
611 615 7.348274 TCCCATCTAAATTCACAATAGAGAGGT 59.652 37.037 0.00 0.00 0.00 3.85
612 616 7.739825 TCCCATCTAAATTCACAATAGAGAGG 58.260 38.462 0.00 0.00 0.00 3.69
613 617 9.618890 TTTCCCATCTAAATTCACAATAGAGAG 57.381 33.333 0.00 0.00 0.00 3.20
616 620 9.699410 ACATTTCCCATCTAAATTCACAATAGA 57.301 29.630 0.00 0.00 0.00 1.98
735 1121 9.386010 GGTGTACATTAACTTGGTATGTCATAA 57.614 33.333 0.00 0.00 34.55 1.90
747 1133 8.522542 TGGTAAACTTTGGTGTACATTAACTT 57.477 30.769 0.00 0.00 37.77 2.66
1132 1551 2.497675 AGCTTCAGACGGTCATATGTGT 59.502 45.455 11.27 0.24 0.00 3.72
1275 1703 7.711339 GGTCCTCGAGAATAATCAATAAAGTGT 59.289 37.037 15.71 0.00 0.00 3.55
1318 1748 3.718434 AGATGGTGGATTCAGGCTCATTA 59.282 43.478 0.00 0.00 0.00 1.90
1487 1918 1.374125 CGTCTGACCGGATTGTGCA 60.374 57.895 9.46 0.00 0.00 4.57
1769 2231 3.062466 CTCCGGGCAGTGTCTCGA 61.062 66.667 0.00 0.00 0.00 4.04
2144 2611 0.467474 ATCCTGGTCCGCTCGTGATA 60.467 55.000 0.00 0.00 0.00 2.15
2485 2954 4.681074 TGTGGATGACTCAACAACAGTA 57.319 40.909 0.00 0.00 0.00 2.74
2601 3070 9.553064 GAATATTCTCAACACTATTCTCACCAT 57.447 33.333 8.27 0.00 31.11 3.55
2645 3114 0.462375 GCCACACCCGGAAAGTTTTT 59.538 50.000 0.73 0.00 0.00 1.94
2709 3178 0.677288 TCCGATGACCAACACGTTCT 59.323 50.000 0.00 0.00 0.00 3.01
2811 3280 5.904984 TGCCAAACACCTCCATAGTATAT 57.095 39.130 0.00 0.00 0.00 0.86
2816 3285 2.513753 TGTTGCCAAACACCTCCATAG 58.486 47.619 0.00 0.00 41.41 2.23
2817 3286 2.666272 TGTTGCCAAACACCTCCATA 57.334 45.000 0.00 0.00 41.41 2.74
2818 3287 1.786937 TTGTTGCCAAACACCTCCAT 58.213 45.000 0.00 0.00 45.91 3.41
2819 3288 1.561643 TTTGTTGCCAAACACCTCCA 58.438 45.000 0.00 0.00 45.91 3.86
2917 3398 3.131577 AGGAGCGACGTTATCCAATTACA 59.868 43.478 14.67 0.00 35.45 2.41
2941 3422 4.752879 CGCGCCGGGGAAGAAGAA 62.753 66.667 24.68 0.00 0.00 2.52
3143 3624 2.180017 CGCATGCTTTGGGTCAGC 59.820 61.111 17.13 0.00 37.82 4.26
3237 3725 2.139118 GTGCGAGAGAAAAAGAGCAGT 58.861 47.619 0.00 0.00 35.15 4.40
3275 3763 2.032528 CTTCTGTTCCCGCAGCCA 59.967 61.111 0.00 0.00 36.49 4.75
3298 3787 1.474320 CCAAATCGGCTGTATCGGGAA 60.474 52.381 0.00 0.00 0.00 3.97
3435 3924 3.071167 AGGAGGTGTTTGGTTACTGAGAC 59.929 47.826 0.00 0.00 0.00 3.36
3518 4007 1.256812 CCACAAAAGGGTCACCATCC 58.743 55.000 0.00 0.00 40.13 3.51
3601 4090 8.324191 AGGAAACCATCTATCATCTTTAGTGA 57.676 34.615 0.00 0.00 0.00 3.41
3622 4111 4.255301 GCATTTGCCATCATCAAAAGGAA 58.745 39.130 0.00 0.00 37.04 3.36
3756 4247 7.706179 TGCTCACTTTAATTTTGTCTTTCTTGG 59.294 33.333 0.00 0.00 0.00 3.61
3835 4327 5.959618 ACAGCAGGTTAAAAACTATGACC 57.040 39.130 0.00 0.00 0.00 4.02
4108 4602 3.371168 CTGTGGTGAATTTCCAACAACG 58.629 45.455 5.14 0.00 35.25 4.10
4109 4603 3.383185 TCCTGTGGTGAATTTCCAACAAC 59.617 43.478 5.14 0.00 35.25 3.32
4122 4616 2.609427 ATGTGATCGATCCTGTGGTG 57.391 50.000 22.31 0.00 0.00 4.17
4126 4620 6.258727 GTGTGATTTTATGTGATCGATCCTGT 59.741 38.462 22.31 10.32 0.00 4.00
4129 6048 5.462068 TCGTGTGATTTTATGTGATCGATCC 59.538 40.000 22.31 13.85 0.00 3.36
4161 6080 2.268762 TGGCTATCAGTTGTTGTGCA 57.731 45.000 0.00 0.00 0.00 4.57
4228 6147 6.057533 TGAGACATTGAACACTGTGAGATTT 58.942 36.000 15.86 0.00 0.00 2.17
4229 6148 5.614308 TGAGACATTGAACACTGTGAGATT 58.386 37.500 15.86 0.00 0.00 2.40
4230 6149 5.219343 TGAGACATTGAACACTGTGAGAT 57.781 39.130 15.86 0.00 0.00 2.75
4235 6154 7.566760 TGTATTTTGAGACATTGAACACTGT 57.433 32.000 0.00 0.00 0.00 3.55
4237 6156 9.301153 GTTTTGTATTTTGAGACATTGAACACT 57.699 29.630 0.00 0.00 0.00 3.55
4240 6159 9.515020 TGAGTTTTGTATTTTGAGACATTGAAC 57.485 29.630 0.00 0.00 0.00 3.18
4241 6160 9.515020 GTGAGTTTTGTATTTTGAGACATTGAA 57.485 29.630 0.00 0.00 0.00 2.69
4242 6161 7.855409 CGTGAGTTTTGTATTTTGAGACATTGA 59.145 33.333 0.00 0.00 0.00 2.57
4243 6162 7.357532 GCGTGAGTTTTGTATTTTGAGACATTG 60.358 37.037 0.00 0.00 0.00 2.82
4245 6164 6.142817 GCGTGAGTTTTGTATTTTGAGACAT 58.857 36.000 0.00 0.00 0.00 3.06
4246 6165 5.065346 TGCGTGAGTTTTGTATTTTGAGACA 59.935 36.000 0.00 0.00 0.00 3.41
4247 6166 5.395486 GTGCGTGAGTTTTGTATTTTGAGAC 59.605 40.000 0.00 0.00 0.00 3.36
4248 6167 5.065346 TGTGCGTGAGTTTTGTATTTTGAGA 59.935 36.000 0.00 0.00 0.00 3.27
4249 6168 5.171337 GTGTGCGTGAGTTTTGTATTTTGAG 59.829 40.000 0.00 0.00 0.00 3.02
4250 6169 5.031578 GTGTGCGTGAGTTTTGTATTTTGA 58.968 37.500 0.00 0.00 0.00 2.69
4251 6170 4.795795 TGTGTGCGTGAGTTTTGTATTTTG 59.204 37.500 0.00 0.00 0.00 2.44
4252 6171 4.796312 GTGTGTGCGTGAGTTTTGTATTTT 59.204 37.500 0.00 0.00 0.00 1.82
4253 6172 4.347813 GTGTGTGCGTGAGTTTTGTATTT 58.652 39.130 0.00 0.00 0.00 1.40
4254 6173 3.242936 GGTGTGTGCGTGAGTTTTGTATT 60.243 43.478 0.00 0.00 0.00 1.89
4255 6174 2.289547 GGTGTGTGCGTGAGTTTTGTAT 59.710 45.455 0.00 0.00 0.00 2.29
4256 6175 1.666700 GGTGTGTGCGTGAGTTTTGTA 59.333 47.619 0.00 0.00 0.00 2.41
4257 6176 0.450184 GGTGTGTGCGTGAGTTTTGT 59.550 50.000 0.00 0.00 0.00 2.83
4277 6196 4.557690 GCGACCTGCACTTATATATACACG 59.442 45.833 0.00 0.00 45.45 4.49
4299 6218 4.083862 GAGGTCTGGGTCGGTGGC 62.084 72.222 0.00 0.00 0.00 5.01
4383 6302 0.822164 GTACATGGCCGTGTCCTAGT 59.178 55.000 33.57 11.31 33.62 2.57
4410 6329 0.958091 TGAATTTGTGTCCGGCCAAG 59.042 50.000 2.24 0.00 0.00 3.61
4451 6370 3.350219 TTAGGAAGTGATCAGGGTTGC 57.650 47.619 0.00 0.00 0.00 4.17
4456 6375 9.626045 GTTTTGTTTATTTAGGAAGTGATCAGG 57.374 33.333 0.00 0.00 0.00 3.86
4493 6412 5.808042 TCCTACGTGCTAGTAGTGTTAAG 57.192 43.478 14.78 3.02 41.76 1.85
4534 6453 2.142292 ATTCCTTCTTGGGCACGCCT 62.142 55.000 8.20 0.00 36.20 5.52
4535 6454 1.250840 AATTCCTTCTTGGGCACGCC 61.251 55.000 0.00 0.00 36.20 5.68
4536 6455 0.171231 GAATTCCTTCTTGGGCACGC 59.829 55.000 0.00 0.00 36.20 5.34
4557 6476 5.339035 CCATTTGCCCCTTTCCAATGATTAA 60.339 40.000 0.00 0.00 0.00 1.40
4593 6512 1.002533 CCCCTTCTCCCTAACCCGA 59.997 63.158 0.00 0.00 0.00 5.14
4834 7120 1.801771 CATGTTTAACTGCGGTTCCGA 59.198 47.619 15.74 0.00 36.92 4.55
4866 7152 7.930865 CCAAAGTTTCAGAATATTTGGGAAACA 59.069 33.333 25.62 5.06 45.90 2.83
4913 7199 5.819379 GCAACCAGACTTAGAATGATCATGA 59.181 40.000 9.46 0.00 0.00 3.07
4924 7210 3.055819 TCAGGCTAAGCAACCAGACTTAG 60.056 47.826 5.60 5.60 45.33 2.18
4934 7220 2.371841 TCTGGTCTTTCAGGCTAAGCAA 59.628 45.455 0.00 0.00 35.58 3.91
4976 7262 2.743928 CAACCGCCTCCTCACTGC 60.744 66.667 0.00 0.00 0.00 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.