Multiple sequence alignment - TraesCS6B01G032200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G032200 chr6B 100.000 5375 0 0 1 5375 18850570 18845196 0.000000e+00 9926.0
1 TraesCS6B01G032200 chr6B 77.622 2431 449 64 1079 3454 18239511 18241901 0.000000e+00 1387.0
2 TraesCS6B01G032200 chr6B 76.754 1910 383 42 1577 3454 18401612 18399732 0.000000e+00 1011.0
3 TraesCS6B01G032200 chr6B 75.758 1815 362 53 2449 4227 18166275 18168047 0.000000e+00 843.0
4 TraesCS6B01G032200 chr6B 78.136 1148 204 30 2449 3568 18813939 18815067 0.000000e+00 686.0
5 TraesCS6B01G032200 chr6B 92.040 402 22 5 4471 4863 18798023 18798423 1.690000e-154 556.0
6 TraesCS6B01G032200 chr6B 81.361 617 87 17 1274 1873 18165022 18165627 1.350000e-130 477.0
7 TraesCS6B01G032200 chr6B 96.842 285 9 0 3872 4156 18836666 18836382 1.350000e-130 477.0
8 TraesCS6B01G032200 chr6B 81.122 392 69 4 3835 4222 18633459 18633849 5.230000e-80 309.0
9 TraesCS6B01G032200 chr6B 75.701 642 128 19 3592 4219 18242000 18242627 4.070000e-76 296.0
10 TraesCS6B01G032200 chr6B 80.311 386 73 2 3840 4222 18816947 18817332 6.810000e-74 289.0
11 TraesCS6B01G032200 chr6B 90.783 217 17 3 4246 4462 18836369 18836156 2.450000e-73 287.0
12 TraesCS6B01G032200 chr6B 73.433 670 133 24 1300 1936 17729096 17728439 5.460000e-50 209.0
13 TraesCS6B01G032200 chr6B 100.000 30 0 0 3592 3621 29969185 29969156 7.520000e-04 56.5
14 TraesCS6B01G032200 chr6D 93.883 4218 175 35 538 4687 10317885 10313683 0.000000e+00 6283.0
15 TraesCS6B01G032200 chr6D 75.248 1814 350 68 2451 4222 10309303 10307547 0.000000e+00 771.0
16 TraesCS6B01G032200 chr6D 75.831 1233 230 36 2452 3641 9851334 9850127 1.010000e-156 564.0
17 TraesCS6B01G032200 chr6D 79.558 543 90 10 2449 2973 9914256 9914795 8.500000e-98 368.0
18 TraesCS6B01G032200 chr6D 91.018 167 15 0 5060 5226 10313132 10312966 5.420000e-55 226.0
19 TraesCS6B01G032200 chr6D 95.000 140 6 1 4724 4863 10313682 10313544 9.060000e-53 219.0
20 TraesCS6B01G032200 chr6D 73.472 671 131 25 1300 1936 9852567 9851910 5.460000e-50 209.0
21 TraesCS6B01G032200 chr6D 85.294 204 11 4 4860 5062 10313487 10313302 5.490000e-45 193.0
22 TraesCS6B01G032200 chr6D 100.000 31 0 0 3592 3622 16943282 16943312 2.090000e-04 58.4
23 TraesCS6B01G032200 chr6A 93.002 3701 166 33 1234 4863 11767812 11764134 0.000000e+00 5313.0
24 TraesCS6B01G032200 chr6A 77.583 3020 519 99 1291 4222 11497287 11500236 0.000000e+00 1681.0
25 TraesCS6B01G032200 chr6A 94.587 702 32 5 538 1236 11768744 11768046 0.000000e+00 1081.0
26 TraesCS6B01G032200 chr6A 78.211 1230 217 38 2449 3649 11476355 11477562 0.000000e+00 739.0
27 TraesCS6B01G032200 chr6A 76.036 1206 242 36 3036 4222 11679430 11678253 2.790000e-162 582.0
28 TraesCS6B01G032200 chr6A 91.463 164 13 1 5064 5226 11763654 11763491 1.950000e-54 224.0
29 TraesCS6B01G032200 chr6A 91.720 157 13 0 5219 5375 178882356 178882512 9.060000e-53 219.0
30 TraesCS6B01G032200 chr6A 86.301 146 19 1 1469 1614 10939780 10939636 2.000000e-34 158.0
31 TraesCS6B01G032200 chr6A 100.000 31 0 0 3592 3622 17649414 17649444 2.090000e-04 58.4
32 TraesCS6B01G032200 chr1B 98.708 542 7 0 1 542 623365052 623365593 0.000000e+00 963.0
33 TraesCS6B01G032200 chr7B 94.649 542 29 0 1 542 257648636 257648095 0.000000e+00 841.0
34 TraesCS6B01G032200 chr7B 85.882 340 36 4 1 328 72304875 72304536 8.570000e-93 351.0
35 TraesCS6B01G032200 chr3A 93.358 542 23 2 1 542 639709084 639708556 0.000000e+00 789.0
36 TraesCS6B01G032200 chrUn 78.763 1229 215 29 2451 3649 240893050 240894262 0.000000e+00 782.0
37 TraesCS6B01G032200 chrUn 78.763 1229 215 29 2451 3649 268930850 268929638 0.000000e+00 782.0
38 TraesCS6B01G032200 chr4B 98.626 364 5 0 181 544 633618142 633618505 0.000000e+00 645.0
39 TraesCS6B01G032200 chr4B 100.000 75 0 0 1 75 633617715 633617789 7.260000e-29 139.0
40 TraesCS6B01G032200 chr1A 86.018 329 40 4 4 330 163381879 163381555 1.110000e-91 348.0
41 TraesCS6B01G032200 chr1A 90.506 158 11 2 5220 5375 579029422 579029577 7.060000e-49 206.0
42 TraesCS6B01G032200 chr1A 84.737 190 26 3 343 530 254181044 254181232 2.560000e-43 187.0
43 TraesCS6B01G032200 chr5A 83.918 342 32 6 1 330 704693299 704693629 6.760000e-79 305.0
44 TraesCS6B01G032200 chr7D 93.631 157 10 0 5219 5375 613754101 613754257 9.000000e-58 235.0
45 TraesCS6B01G032200 chr2B 93.631 157 9 1 5219 5375 116033751 116033906 3.240000e-57 233.0
46 TraesCS6B01G032200 chr2B 76.336 393 81 11 3840 4223 27616367 27615978 3.280000e-47 200.0
47 TraesCS6B01G032200 chr4A 91.720 157 12 1 5219 5375 631536111 631535956 3.260000e-52 217.0
48 TraesCS6B01G032200 chr5D 85.644 202 26 3 343 542 518005241 518005441 5.460000e-50 209.0
49 TraesCS6B01G032200 chr7A 83.920 199 28 4 343 538 21114200 21114003 2.560000e-43 187.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G032200 chr6B 18845196 18850570 5374 True 9926.0 9926 100.000000 1 5375 1 chr6B.!!$R3 5374
1 TraesCS6B01G032200 chr6B 18399732 18401612 1880 True 1011.0 1011 76.754000 1577 3454 1 chr6B.!!$R2 1877
2 TraesCS6B01G032200 chr6B 18239511 18242627 3116 False 841.5 1387 76.661500 1079 4219 2 chr6B.!!$F4 3140
3 TraesCS6B01G032200 chr6B 18165022 18168047 3025 False 660.0 843 78.559500 1274 4227 2 chr6B.!!$F3 2953
4 TraesCS6B01G032200 chr6B 18813939 18817332 3393 False 487.5 686 79.223500 2449 4222 2 chr6B.!!$F5 1773
5 TraesCS6B01G032200 chr6B 18836156 18836666 510 True 382.0 477 93.812500 3872 4462 2 chr6B.!!$R5 590
6 TraesCS6B01G032200 chr6B 17728439 17729096 657 True 209.0 209 73.433000 1300 1936 1 chr6B.!!$R1 636
7 TraesCS6B01G032200 chr6D 10307547 10317885 10338 True 1538.4 6283 88.088600 538 5226 5 chr6D.!!$R2 4688
8 TraesCS6B01G032200 chr6D 9850127 9852567 2440 True 386.5 564 74.651500 1300 3641 2 chr6D.!!$R1 2341
9 TraesCS6B01G032200 chr6D 9914256 9914795 539 False 368.0 368 79.558000 2449 2973 1 chr6D.!!$F1 524
10 TraesCS6B01G032200 chr6A 11763491 11768744 5253 True 2206.0 5313 93.017333 538 5226 3 chr6A.!!$R3 4688
11 TraesCS6B01G032200 chr6A 11497287 11500236 2949 False 1681.0 1681 77.583000 1291 4222 1 chr6A.!!$F2 2931
12 TraesCS6B01G032200 chr6A 11476355 11477562 1207 False 739.0 739 78.211000 2449 3649 1 chr6A.!!$F1 1200
13 TraesCS6B01G032200 chr6A 11678253 11679430 1177 True 582.0 582 76.036000 3036 4222 1 chr6A.!!$R2 1186
14 TraesCS6B01G032200 chr1B 623365052 623365593 541 False 963.0 963 98.708000 1 542 1 chr1B.!!$F1 541
15 TraesCS6B01G032200 chr7B 257648095 257648636 541 True 841.0 841 94.649000 1 542 1 chr7B.!!$R2 541
16 TraesCS6B01G032200 chr3A 639708556 639709084 528 True 789.0 789 93.358000 1 542 1 chr3A.!!$R1 541
17 TraesCS6B01G032200 chrUn 240893050 240894262 1212 False 782.0 782 78.763000 2451 3649 1 chrUn.!!$F1 1198
18 TraesCS6B01G032200 chrUn 268929638 268930850 1212 True 782.0 782 78.763000 2451 3649 1 chrUn.!!$R1 1198
19 TraesCS6B01G032200 chr4B 633617715 633618505 790 False 392.0 645 99.313000 1 544 2 chr4B.!!$F1 543

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
544 792 1.494721 TCAGAACAGGCCCTGAGTTTT 59.505 47.619 19.9 0.0 34.78 2.43 F
1548 2066 0.326264 AGAGGGAAGTCGCAAAGCAT 59.674 50.000 0.0 0.0 0.00 3.79 F
1645 2163 0.469331 ACGATCTCGGGCAGGGATAA 60.469 55.000 0.0 0.0 40.95 1.75 F
2516 3132 0.904649 AATCTGATCCTGTCCGCACA 59.095 50.000 0.0 0.0 0.00 4.57 F
3353 3987 1.150536 GTGGCCCAGTTGGAGTGAA 59.849 57.895 0.0 0.0 37.39 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2437 3053 0.249996 AAGCATGCCAACAACCTTGC 60.250 50.0 15.66 0.0 33.72 4.01 R
3217 3851 0.035317 CCACCAACAGTAGCTGCAGA 59.965 55.0 20.43 0.0 34.37 4.26 R
3587 4224 0.108615 CTCGACTCGGCACCATCTTT 60.109 55.0 0.00 0.0 0.00 2.52 R
3650 4287 1.298859 CCTAAAGCTGGACGCACCAC 61.299 60.0 0.00 0.0 44.64 4.16 R
5265 6268 0.036765 AGTGCACGGCGAAAAGGATA 60.037 50.0 16.62 0.0 0.00 2.59 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
544 792 1.494721 TCAGAACAGGCCCTGAGTTTT 59.505 47.619 19.90 0.00 34.78 2.43
554 802 3.573967 GGCCCTGAGTTTTGAAGATTCAA 59.426 43.478 3.91 3.91 44.78 2.69
670 920 4.037684 GCAATCATGAGAGGCTAAAAGCAT 59.962 41.667 0.09 0.00 44.75 3.79
753 1003 2.979814 ACAGTTGCACACAGTACTCA 57.020 45.000 0.00 0.00 0.00 3.41
890 1141 8.887036 TTATTGCATTTGTATACAGATCGACT 57.113 30.769 5.94 0.00 0.00 4.18
919 1171 3.131223 CGAGGAATTCAGCTGGAGACTTA 59.869 47.826 15.13 0.00 0.00 2.24
947 1199 2.877168 GCTGACTGATCAATGATGACCC 59.123 50.000 0.00 0.00 38.69 4.46
1030 1282 9.426837 GTACAGAAGTATGTTTACATGTACCAA 57.573 33.333 4.68 0.00 38.06 3.67
1048 1300 6.762187 TGTACCAATCACTTTTCGTTCACTTA 59.238 34.615 0.00 0.00 0.00 2.24
1070 1322 9.289782 ACTTATGCATGTTATCTTTCTTATCCC 57.710 33.333 10.16 0.00 0.00 3.85
1096 1348 9.537848 CGTTCGAGCTAGTTTACAAAATATTTT 57.462 29.630 7.64 7.64 0.00 1.82
1112 1364 8.798402 CAAAATATTTTGGTTACTGTACCCTCA 58.202 33.333 26.58 0.00 42.81 3.86
1201 1456 7.703298 TTAATTATATCACGCTTGCGTAACT 57.297 32.000 20.22 10.26 0.00 2.24
1447 1947 2.978824 GAGCCGTAGCCCAACAGA 59.021 61.111 0.00 0.00 41.25 3.41
1460 1963 3.489738 GCCCAACAGATCGAATCAAATGG 60.490 47.826 0.00 0.00 0.00 3.16
1548 2066 0.326264 AGAGGGAAGTCGCAAAGCAT 59.674 50.000 0.00 0.00 0.00 3.79
1570 2088 0.813821 GAAGCTTCCCAATCAGGTGC 59.186 55.000 15.97 0.00 34.66 5.01
1617 2135 5.641209 CGAGGAGGATGATTTCAATGGTATC 59.359 44.000 0.00 0.00 0.00 2.24
1645 2163 0.469331 ACGATCTCGGGCAGGGATAA 60.469 55.000 0.00 0.00 40.95 1.75
1707 2225 3.709987 CAGGTTTTTGCTGGTTCTTCAG 58.290 45.455 0.00 0.00 37.79 3.02
1746 2264 4.904241 AGATTGACATATCTAGCCTTGGC 58.096 43.478 2.97 2.97 33.17 4.52
1854 2375 4.333926 GCCATGAAGAAGGATACAACAGAC 59.666 45.833 0.00 0.00 41.41 3.51
1898 2419 6.885918 TGCTATGAGAAAAATCCACAAGATCA 59.114 34.615 0.00 0.00 32.47 2.92
1972 2511 4.094294 GCGTTGATCCTGCAATACTTGTTA 59.906 41.667 0.00 0.00 0.00 2.41
2273 2854 1.544691 TGGAGTCGTTCCTAGCAGAAC 59.455 52.381 9.52 4.66 46.92 3.01
2411 2992 5.877564 GTCAAAACCTAGGAAAGAGAGATGG 59.122 44.000 17.98 0.00 0.00 3.51
2436 3052 2.290577 GCAATTGGAAGAGGAGGACACT 60.291 50.000 7.72 0.00 0.00 3.55
2437 3053 3.341823 CAATTGGAAGAGGAGGACACTG 58.658 50.000 0.00 0.00 0.00 3.66
2447 3063 1.680338 GAGGACACTGCAAGGTTGTT 58.320 50.000 0.00 0.00 39.30 2.83
2495 3111 1.001974 TGACCTGCGCTACACAGATTT 59.998 47.619 9.73 0.00 37.32 2.17
2497 3113 1.001974 ACCTGCGCTACACAGATTTGA 59.998 47.619 9.73 0.00 37.32 2.69
2501 3117 3.599343 TGCGCTACACAGATTTGAATCT 58.401 40.909 9.73 0.44 46.30 2.40
2516 3132 0.904649 AATCTGATCCTGTCCGCACA 59.095 50.000 0.00 0.00 0.00 4.57
2638 3254 2.806244 CTCCGGTTAACAAAGTCCACTG 59.194 50.000 8.10 0.00 0.00 3.66
2775 3400 5.126067 ACTGTCATTATTGGTGCCTATGAC 58.874 41.667 0.00 0.00 43.25 3.06
2777 3402 4.141824 TGTCATTATTGGTGCCTATGACGA 60.142 41.667 0.00 0.00 44.93 4.20
2824 3449 7.370383 GGACTGCAAAGAATTGAAGAACATAA 58.630 34.615 3.61 0.00 43.96 1.90
3217 3851 7.819415 CCACATCCGTACATATTGATATCTGTT 59.181 37.037 3.98 0.00 0.00 3.16
3353 3987 1.150536 GTGGCCCAGTTGGAGTGAA 59.849 57.895 0.00 0.00 37.39 3.18
3495 4132 5.965922 AGTGCTTTATTATTGCCTGGTTTC 58.034 37.500 0.00 0.00 0.00 2.78
3576 4213 3.227276 CCTCCCGACGGATCAGGG 61.227 72.222 17.49 5.85 46.40 4.45
3587 4224 1.267574 GGATCAGGGTGGCAGAGTCA 61.268 60.000 0.00 0.00 0.00 3.41
3650 4287 1.605710 CTTCAATATTCGGCAGGGCAG 59.394 52.381 0.00 0.00 0.00 4.85
3732 4381 6.305877 CACAGACATTTACTACGTCAACTCTC 59.694 42.308 0.00 0.00 31.92 3.20
3864 4522 3.312973 CCCTCGAGATAGTGTACTGTGAC 59.687 52.174 15.71 0.00 0.00 3.67
4129 4793 1.833787 TAACCTTGAGTGGGACGGGC 61.834 60.000 0.00 0.00 0.00 6.13
4185 4849 2.074547 GCCACTCGCTGTACTACAAA 57.925 50.000 0.00 0.00 0.00 2.83
4186 4850 2.409975 GCCACTCGCTGTACTACAAAA 58.590 47.619 0.00 0.00 0.00 2.44
4191 4855 3.057033 ACTCGCTGTACTACAAAACCGAT 60.057 43.478 0.00 0.00 0.00 4.18
4249 4930 8.085296 CACACATATTACTCCATCTCTCCTTAC 58.915 40.741 0.00 0.00 0.00 2.34
4258 4939 3.691609 CCATCTCTCCTTACTTTTGTGCC 59.308 47.826 0.00 0.00 0.00 5.01
4272 4953 3.889196 TTGTGCCGAACAAATCACTAC 57.111 42.857 1.67 0.00 45.85 2.73
4419 5100 1.671379 GGGCTCGTCCAACCTGAAC 60.671 63.158 0.00 0.00 36.21 3.18
4446 5127 0.934901 CGTCATCATGCGGACCTACG 60.935 60.000 9.94 0.00 0.00 3.51
4460 5141 4.313282 GGACCTACGTAACTGAAGCTTTT 58.687 43.478 0.00 0.00 0.00 2.27
4465 5146 3.467803 ACGTAACTGAAGCTTTTCTGCT 58.532 40.909 0.00 0.00 46.40 4.24
4482 5185 1.337703 TGCTGTGTTGCTTGATTGGTC 59.662 47.619 0.00 0.00 0.00 4.02
4484 5187 2.813754 GCTGTGTTGCTTGATTGGTCTA 59.186 45.455 0.00 0.00 0.00 2.59
4541 5244 0.109132 CGCCCCTTTGCAGTTTCATC 60.109 55.000 0.00 0.00 0.00 2.92
4543 5246 1.203287 GCCCCTTTGCAGTTTCATCTC 59.797 52.381 0.00 0.00 0.00 2.75
4642 5355 6.850555 AGCAAATGAGAAAATAAGTCAGAGC 58.149 36.000 0.00 0.00 0.00 4.09
4651 5364 0.901827 TAAGTCAGAGCGGGCATTCA 59.098 50.000 0.00 0.00 0.00 2.57
4679 5392 1.427020 GCATGAGCTCCGTCTTTGC 59.573 57.895 12.15 7.13 37.91 3.68
4704 5417 1.132262 GTGTGAGTGTTTGGTGTGGTG 59.868 52.381 0.00 0.00 0.00 4.17
4705 5418 1.271652 TGTGAGTGTTTGGTGTGGTGT 60.272 47.619 0.00 0.00 0.00 4.16
4710 5423 2.237643 AGTGTTTGGTGTGGTGTAGTCA 59.762 45.455 0.00 0.00 0.00 3.41
4714 5427 1.374252 GGTGTGGTGTAGTCAGCCG 60.374 63.158 0.00 0.00 40.84 5.52
4722 5435 0.604511 TGTAGTCAGCCGTCGACTGA 60.605 55.000 14.70 7.20 43.50 3.41
4760 5473 8.246430 AGCTTGAATGATGATGGTGATTATTT 57.754 30.769 0.00 0.00 0.00 1.40
4781 5495 5.493133 TTGTGTATGTGGAGTTGTTTGTC 57.507 39.130 0.00 0.00 0.00 3.18
4800 5514 5.365403 TGTCGTGGTTTGAATAATCAACC 57.635 39.130 0.00 0.00 45.01 3.77
4802 5516 4.066490 TCGTGGTTTGAATAATCAACCGT 58.934 39.130 0.00 0.00 45.01 4.83
4809 5523 8.195436 TGGTTTGAATAATCAACCGTTTGTAAA 58.805 29.630 0.00 0.00 45.01 2.01
4822 5536 7.867445 ACCGTTTGTAAATTCTAATTTGCAG 57.133 32.000 15.36 9.14 46.46 4.41
4833 5547 6.772360 TTCTAATTTGCAGCATGAATGGTA 57.228 33.333 0.00 0.00 39.69 3.25
4909 5683 4.074259 TGATGATAATTTGGATGGGAGCG 58.926 43.478 0.00 0.00 0.00 5.03
4914 5688 5.473162 TGATAATTTGGATGGGAGCGTATTG 59.527 40.000 0.00 0.00 0.00 1.90
4935 5709 3.005472 TGAACGTTCTCGGAGTTCTGAAT 59.995 43.478 27.32 0.00 43.19 2.57
4988 5763 9.965824 TTTCTTTAGGAAATGATTCTGTTCAAC 57.034 29.630 0.00 0.00 38.81 3.18
4989 5764 7.806690 TCTTTAGGAAATGATTCTGTTCAACG 58.193 34.615 3.41 0.00 35.79 4.10
4990 5765 7.659799 TCTTTAGGAAATGATTCTGTTCAACGA 59.340 33.333 0.00 0.00 35.79 3.85
5002 5777 4.915667 TCTGTTCAACGAACTGATAACTCG 59.084 41.667 11.09 0.00 42.50 4.18
5005 5780 3.499048 TCAACGAACTGATAACTCGCTC 58.501 45.455 0.00 0.00 36.03 5.03
5062 5837 4.687215 TGCAGTGCGGAGTGAGCC 62.687 66.667 16.74 0.00 0.00 4.70
5087 6089 2.599281 TCGAAGCCGTCCAGGTGA 60.599 61.111 0.00 0.00 43.70 4.02
5143 6145 4.752879 CCGGGACCACGACGCAAT 62.753 66.667 0.00 0.00 35.47 3.56
5165 6167 2.113139 CCTGGTTGACACGGGCTT 59.887 61.111 0.00 0.00 0.00 4.35
5172 6174 2.045926 GACACGGGCTTGCATCCT 60.046 61.111 5.62 0.00 0.00 3.24
5181 6183 1.919600 GCTTGCATCCTCCCACCTCT 61.920 60.000 0.00 0.00 0.00 3.69
5226 6229 2.260869 CCTTGTTGCCGGTGGTCTG 61.261 63.158 1.90 0.00 0.00 3.51
5227 6230 1.227823 CTTGTTGCCGGTGGTCTGA 60.228 57.895 1.90 0.00 0.00 3.27
5228 6231 0.817634 CTTGTTGCCGGTGGTCTGAA 60.818 55.000 1.90 0.00 0.00 3.02
5229 6232 1.098712 TTGTTGCCGGTGGTCTGAAC 61.099 55.000 1.90 0.00 0.00 3.18
5232 6235 0.534203 TTGCCGGTGGTCTGAACTTC 60.534 55.000 1.90 0.00 0.00 3.01
5233 6236 1.371558 GCCGGTGGTCTGAACTTCT 59.628 57.895 1.90 0.00 0.00 2.85
5234 6237 0.250338 GCCGGTGGTCTGAACTTCTT 60.250 55.000 1.90 0.00 0.00 2.52
5235 6238 1.814248 GCCGGTGGTCTGAACTTCTTT 60.814 52.381 1.90 0.00 0.00 2.52
5236 6239 2.572290 CCGGTGGTCTGAACTTCTTTT 58.428 47.619 0.00 0.00 0.00 2.27
5237 6240 2.290641 CCGGTGGTCTGAACTTCTTTTG 59.709 50.000 0.00 0.00 0.00 2.44
5238 6241 2.943033 CGGTGGTCTGAACTTCTTTTGT 59.057 45.455 0.00 0.00 0.00 2.83
5239 6242 3.377172 CGGTGGTCTGAACTTCTTTTGTT 59.623 43.478 0.00 0.00 0.00 2.83
5240 6243 4.672409 GGTGGTCTGAACTTCTTTTGTTG 58.328 43.478 0.00 0.00 0.00 3.33
5241 6244 4.398044 GGTGGTCTGAACTTCTTTTGTTGA 59.602 41.667 0.00 0.00 0.00 3.18
5242 6245 5.067805 GGTGGTCTGAACTTCTTTTGTTGAT 59.932 40.000 0.00 0.00 0.00 2.57
5243 6246 6.405842 GGTGGTCTGAACTTCTTTTGTTGATT 60.406 38.462 0.00 0.00 0.00 2.57
5244 6247 7.201785 GGTGGTCTGAACTTCTTTTGTTGATTA 60.202 37.037 0.00 0.00 0.00 1.75
5245 6248 8.188139 GTGGTCTGAACTTCTTTTGTTGATTAA 58.812 33.333 0.00 0.00 0.00 1.40
5253 6256 9.952188 AACTTCTTTTGTTGATTAACTAGAAGC 57.048 29.630 23.84 0.00 42.73 3.86
5254 6257 9.120538 ACTTCTTTTGTTGATTAACTAGAAGCA 57.879 29.630 23.84 9.62 42.73 3.91
5260 6263 7.994425 TGTTGATTAACTAGAAGCAAATGGA 57.006 32.000 0.00 0.00 36.54 3.41
5263 6266 7.994425 TGATTAACTAGAAGCAAATGGACAA 57.006 32.000 0.00 0.00 0.00 3.18
5265 6268 9.023962 TGATTAACTAGAAGCAAATGGACAATT 57.976 29.630 0.00 0.00 0.00 2.32
5272 12875 7.486407 AGAAGCAAATGGACAATTATCCTTT 57.514 32.000 4.03 0.90 39.75 3.11
5275 12878 6.332630 AGCAAATGGACAATTATCCTTTTCG 58.667 36.000 12.42 9.93 41.69 3.46
5288 12891 2.058829 CTTTTCGCCGTGCACTTGGT 62.059 55.000 16.19 0.00 0.00 3.67
5289 12892 1.658686 TTTTCGCCGTGCACTTGGTT 61.659 50.000 16.19 0.00 0.00 3.67
5291 12894 0.604243 TTCGCCGTGCACTTGGTTAT 60.604 50.000 16.19 0.00 0.00 1.89
5299 12902 2.621055 GTGCACTTGGTTATGGTTGTGA 59.379 45.455 10.32 0.00 0.00 3.58
5310 12943 6.099341 GGTTATGGTTGTGATGTTTTGGATC 58.901 40.000 0.00 0.00 0.00 3.36
5311 12944 6.295011 GGTTATGGTTGTGATGTTTTGGATCA 60.295 38.462 0.00 0.00 0.00 2.92
5312 12945 4.852134 TGGTTGTGATGTTTTGGATCAG 57.148 40.909 0.00 0.00 30.39 2.90
5317 12950 4.717877 TGTGATGTTTTGGATCAGTGACT 58.282 39.130 0.00 0.00 30.39 3.41
5321 12954 6.595326 GTGATGTTTTGGATCAGTGACTCATA 59.405 38.462 0.00 0.00 30.39 2.15
5326 12959 7.281549 TGTTTTGGATCAGTGACTCATATGATG 59.718 37.037 5.72 1.25 32.68 3.07
5327 12960 4.891260 TGGATCAGTGACTCATATGATGC 58.109 43.478 5.72 15.87 39.93 3.91
5328 12961 4.345837 TGGATCAGTGACTCATATGATGCA 59.654 41.667 19.09 19.09 44.78 3.96
5329 12962 5.012768 TGGATCAGTGACTCATATGATGCAT 59.987 40.000 19.09 0.00 42.98 3.96
5343 13134 4.950744 GCATGGCGCATGTATTCC 57.049 55.556 10.83 0.00 43.10 3.01
5346 13137 0.594602 CATGGCGCATGTATTCCAGG 59.405 55.000 10.83 0.00 37.12 4.45
5357 13148 6.808008 CATGTATTCCAGGCTACTAATTGG 57.192 41.667 0.00 0.00 0.00 3.16
5359 13150 3.951563 ATTCCAGGCTACTAATTGGCA 57.048 42.857 0.00 0.00 0.00 4.92
5360 13151 2.710096 TCCAGGCTACTAATTGGCAC 57.290 50.000 0.00 0.00 0.00 5.01
5361 13152 1.211949 TCCAGGCTACTAATTGGCACC 59.788 52.381 0.00 0.00 0.00 5.01
5362 13153 1.212935 CCAGGCTACTAATTGGCACCT 59.787 52.381 0.00 0.00 0.00 4.00
5364 13155 3.495100 CCAGGCTACTAATTGGCACCTAG 60.495 52.174 0.00 0.00 0.00 3.02
5367 13158 3.644738 GGCTACTAATTGGCACCTAGGTA 59.355 47.826 15.80 0.00 0.00 3.08
5369 13160 4.587684 GCTACTAATTGGCACCTAGGTAGA 59.412 45.833 15.80 0.90 0.00 2.59
5370 13161 5.246429 GCTACTAATTGGCACCTAGGTAGAT 59.754 44.000 15.80 3.44 0.00 1.98
5372 13163 5.216622 ACTAATTGGCACCTAGGTAGATGA 58.783 41.667 15.80 0.12 0.00 2.92
5374 13165 2.543037 TGGCACCTAGGTAGATGACA 57.457 50.000 15.80 7.96 0.00 3.58
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
110 111 3.787001 CGAGGGGGAGGGAGTTGC 61.787 72.222 0.00 0.00 0.00 4.17
719 969 5.463061 GTGCAACTGTTAAGTTTCATGCATT 59.537 36.000 0.00 0.00 44.47 3.56
720 970 4.984161 GTGCAACTGTTAAGTTTCATGCAT 59.016 37.500 0.00 0.00 44.47 3.96
723 973 5.339177 TGTGTGCAACTGTTAAGTTTCATG 58.661 37.500 0.00 0.00 44.47 3.07
738 988 3.802866 TGTCATTGAGTACTGTGTGCAA 58.197 40.909 0.00 0.00 0.00 4.08
778 1029 5.759506 TCTCGTGCTTCCACAAAATTTAA 57.240 34.783 0.00 0.00 42.17 1.52
779 1030 5.759506 TTCTCGTGCTTCCACAAAATTTA 57.240 34.783 0.00 0.00 42.17 1.40
866 1117 8.141268 TCAGTCGATCTGTATACAAATGCAATA 58.859 33.333 7.06 0.00 43.97 1.90
884 1135 1.464734 TTCCTCGAGCTTCAGTCGAT 58.535 50.000 6.99 0.00 45.00 3.59
885 1136 1.464734 ATTCCTCGAGCTTCAGTCGA 58.535 50.000 6.99 0.00 43.97 4.20
886 1137 2.189342 GAATTCCTCGAGCTTCAGTCG 58.811 52.381 6.99 0.00 38.84 4.18
887 1138 3.186119 CTGAATTCCTCGAGCTTCAGTC 58.814 50.000 26.35 13.45 39.67 3.51
888 1139 2.676463 GCTGAATTCCTCGAGCTTCAGT 60.676 50.000 30.32 10.23 44.06 3.41
889 1140 1.932511 GCTGAATTCCTCGAGCTTCAG 59.067 52.381 28.35 28.35 44.67 3.02
890 1141 1.552337 AGCTGAATTCCTCGAGCTTCA 59.448 47.619 6.99 13.76 36.00 3.02
891 1142 1.932511 CAGCTGAATTCCTCGAGCTTC 59.067 52.381 8.42 9.92 36.80 3.86
892 1143 1.406614 CCAGCTGAATTCCTCGAGCTT 60.407 52.381 17.39 0.00 36.80 3.74
919 1171 5.866159 TCATTGATCAGTCAGCTCACTAT 57.134 39.130 0.00 0.00 35.39 2.12
947 1199 6.534634 ACCCTCTAGATTAATTCCATTTCCG 58.465 40.000 0.00 0.00 0.00 4.30
1030 1282 5.940192 TGCATAAGTGAACGAAAAGTGAT 57.060 34.783 0.00 0.00 0.00 3.06
1048 1300 6.299141 ACGGGATAAGAAAGATAACATGCAT 58.701 36.000 0.00 0.00 0.00 3.96
1070 1322 9.537848 AAAATATTTTGTAAACTAGCTCGAACG 57.462 29.630 12.62 0.00 0.00 3.95
1112 1364 0.034186 ACCACAATCGATGCACCCAT 60.034 50.000 0.00 0.00 0.00 4.00
1201 1456 5.735285 TGAAACAATATGTGATGGGCAAA 57.265 34.783 0.00 0.00 0.00 3.68
1422 1922 4.129737 GCTACGGCTCGCAGGACA 62.130 66.667 0.00 0.00 35.22 4.02
1447 1947 6.044682 GCCATTTCTTTCCATTTGATTCGAT 58.955 36.000 0.00 0.00 0.00 3.59
1460 1963 3.981211 TGCTCAAACTGCCATTTCTTTC 58.019 40.909 0.00 0.00 0.00 2.62
1537 2055 0.801251 AGCTTCAGATGCTTTGCGAC 59.199 50.000 4.95 0.00 37.52 5.19
1548 2066 1.988107 ACCTGATTGGGAAGCTTCAGA 59.012 47.619 27.02 12.73 38.25 3.27
1570 2088 3.817084 TCTTGCTTGTCAAACATCTCCAG 59.183 43.478 0.00 0.00 33.65 3.86
1617 2135 1.845266 CCCGAGATCGTTGATCAGTG 58.155 55.000 9.28 0.00 41.12 3.66
1645 2163 3.776969 TGGATCTCTATTGCAACCTCTGT 59.223 43.478 0.00 0.00 0.00 3.41
1707 2225 2.386661 TCTCCTCGTTGCTTCCATTC 57.613 50.000 0.00 0.00 0.00 2.67
1854 2375 2.348059 GCATGAAGCTGAGAGAAGAACG 59.652 50.000 0.00 0.00 41.15 3.95
1898 2419 3.882444 TCACGCAGTAGATAGTACCAGT 58.118 45.455 0.00 0.00 41.61 4.00
1972 2511 6.936900 AGTGTCAACATATACAAGAAGCACTT 59.063 34.615 0.00 0.00 39.70 3.16
2273 2854 2.053627 GCTTGTCAAAATGCTGGAACG 58.946 47.619 0.00 0.00 0.00 3.95
2411 2992 1.378514 TCCTCTTCCAATTGCGCCC 60.379 57.895 4.18 0.00 0.00 6.13
2436 3052 1.069427 GCATGCCAACAACCTTGCA 59.931 52.632 6.36 0.00 38.23 4.08
2437 3053 0.249996 AAGCATGCCAACAACCTTGC 60.250 50.000 15.66 0.00 33.72 4.01
2495 3111 1.134699 GTGCGGACAGGATCAGATTCA 60.135 52.381 0.63 0.00 0.00 2.57
2497 3113 0.904649 TGTGCGGACAGGATCAGATT 59.095 50.000 5.33 0.00 0.00 2.40
2516 3132 2.053244 GGGTCATGAGATCCATCACCT 58.947 52.381 13.97 0.00 44.81 4.00
2552 3168 0.388520 GTTTTTGGCTCCCATCACGC 60.389 55.000 0.00 0.00 31.53 5.34
2775 3400 9.162764 TCCCTAAAAGAGATGATTTTTAACTCG 57.837 33.333 0.00 0.00 32.38 4.18
2824 3449 2.576191 TCCCCAACGATCCTTTCAAGAT 59.424 45.455 0.00 0.00 0.00 2.40
3072 3706 0.681733 GGAGGGCTTGATCGCTATGA 59.318 55.000 0.00 0.00 0.00 2.15
3217 3851 0.035317 CCACCAACAGTAGCTGCAGA 59.965 55.000 20.43 0.00 34.37 4.26
3353 3987 3.081554 GGCAGTCCCACATCACCT 58.918 61.111 0.00 0.00 0.00 4.00
3384 4018 4.088056 TGTCTTTGGTTCGTCCCAATAA 57.912 40.909 8.90 0.00 43.77 1.40
3431 4068 1.537990 CCTCCAAAAGTTTGTTGCCCG 60.538 52.381 3.26 0.00 36.45 6.13
3495 4132 5.593183 CAGATGTACTCTGCTTGCATATG 57.407 43.478 0.00 0.00 44.73 1.78
3576 4213 1.808945 CACCATCTTTGACTCTGCCAC 59.191 52.381 0.00 0.00 0.00 5.01
3587 4224 0.108615 CTCGACTCGGCACCATCTTT 60.109 55.000 0.00 0.00 0.00 2.52
3650 4287 1.298859 CCTAAAGCTGGACGCACCAC 61.299 60.000 0.00 0.00 44.64 4.16
3732 4381 2.568623 ACTCCAGGCTACAAAAGGTG 57.431 50.000 0.00 0.00 0.00 4.00
4077 4741 4.329545 TCGCAGTCCACCTTGGGC 62.330 66.667 0.00 0.00 44.07 5.36
4129 4793 4.369182 GACGGGTGATGGTACTTATTCAG 58.631 47.826 0.00 0.00 0.00 3.02
4185 4849 3.313874 CCTCTGGGCAGATCGGTT 58.686 61.111 0.00 0.00 36.76 4.44
4258 4939 6.787085 AAAGAGAAGGTAGTGATTTGTTCG 57.213 37.500 0.00 0.00 0.00 3.95
4272 4953 7.996385 TGGTTTTTGTTCTAGAAAAGAGAAGG 58.004 34.615 6.78 0.00 35.05 3.46
4438 5119 3.589495 AAGCTTCAGTTACGTAGGTCC 57.411 47.619 0.00 0.00 0.00 4.46
4446 5127 4.035675 ACACAGCAGAAAAGCTTCAGTTAC 59.964 41.667 0.00 0.00 43.70 2.50
4460 5141 1.610038 CCAATCAAGCAACACAGCAGA 59.390 47.619 0.00 0.00 36.85 4.26
4465 5146 3.758023 CCATAGACCAATCAAGCAACACA 59.242 43.478 0.00 0.00 0.00 3.72
4482 5185 3.068165 TGCCGATGTAGAGAACACCATAG 59.932 47.826 0.00 0.00 42.09 2.23
4484 5187 1.831106 TGCCGATGTAGAGAACACCAT 59.169 47.619 0.00 0.00 42.09 3.55
4541 5244 7.551035 TCAAATCAAACCAAAACCAAATGAG 57.449 32.000 0.00 0.00 0.00 2.90
4543 5246 9.021863 CAAATCAAATCAAACCAAAACCAAATG 57.978 29.630 0.00 0.00 0.00 2.32
4635 5348 2.467826 GCTGAATGCCCGCTCTGAC 61.468 63.158 0.00 0.00 35.15 3.51
4642 5355 2.060004 CTGCATCAGCTGAATGCCCG 62.060 60.000 30.83 23.10 44.23 6.13
4672 5385 0.814010 ACTCACACCCACGCAAAGAC 60.814 55.000 0.00 0.00 0.00 3.01
4679 5392 0.746563 ACCAAACACTCACACCCACG 60.747 55.000 0.00 0.00 0.00 4.94
4704 5417 2.168947 TCAGTCGACGGCTGACTAC 58.831 57.895 27.28 0.00 44.60 2.73
4705 5418 4.707791 TCAGTCGACGGCTGACTA 57.292 55.556 27.28 6.65 44.60 2.59
4714 5427 6.496571 AGCTTACATATTACAGTCAGTCGAC 58.503 40.000 7.70 7.70 42.95 4.20
4722 5435 9.836864 TCATCATTCAAGCTTACATATTACAGT 57.163 29.630 0.00 0.00 0.00 3.55
4760 5473 3.558006 CGACAAACAACTCCACATACACA 59.442 43.478 0.00 0.00 0.00 3.72
4781 5495 4.413495 ACGGTTGATTATTCAAACCACG 57.587 40.909 9.27 10.07 45.13 4.94
4800 5514 7.332003 TGCTGCAAATTAGAATTTACAAACG 57.668 32.000 0.00 0.00 36.52 3.60
4802 5516 9.486497 TTCATGCTGCAAATTAGAATTTACAAA 57.514 25.926 6.36 0.00 36.52 2.83
4809 5523 6.229936 ACCATTCATGCTGCAAATTAGAAT 57.770 33.333 6.36 8.80 0.00 2.40
4822 5536 7.677454 TCACTATCATCATTACCATTCATGC 57.323 36.000 0.00 0.00 0.00 4.06
4833 5547 7.177216 ACACACAAAACCATCACTATCATCATT 59.823 33.333 0.00 0.00 0.00 2.57
4893 5667 5.042463 TCAATACGCTCCCATCCAAATTA 57.958 39.130 0.00 0.00 0.00 1.40
4909 5683 4.323868 CAGAACTCCGAGAACGTTCAATAC 59.676 45.833 28.78 15.63 39.48 1.89
4914 5688 2.701073 TCAGAACTCCGAGAACGTTC 57.299 50.000 20.71 20.71 37.80 3.95
4968 5743 6.934645 AGTTCGTTGAACAGAATCATTTCCTA 59.065 34.615 11.81 0.00 44.11 2.94
4969 5744 5.765182 AGTTCGTTGAACAGAATCATTTCCT 59.235 36.000 11.81 0.00 44.11 3.36
4988 5763 0.840729 GCGAGCGAGTTATCAGTTCG 59.159 55.000 0.00 0.00 37.40 3.95
4989 5764 0.840729 CGCGAGCGAGTTATCAGTTC 59.159 55.000 12.58 0.00 42.83 3.01
4990 5765 2.945315 CGCGAGCGAGTTATCAGTT 58.055 52.632 12.58 0.00 42.83 3.16
5142 6144 3.861341 CGTGTCAACCAGGGATGAT 57.139 52.632 1.42 0.00 29.99 2.45
5165 6167 1.080907 TCAGAGGTGGGAGGATGCA 59.919 57.895 0.00 0.00 0.00 3.96
5172 6174 1.267574 GCTCCATGTCAGAGGTGGGA 61.268 60.000 0.00 0.00 33.78 4.37
5181 6183 4.147449 CGGGCTCGCTCCATGTCA 62.147 66.667 0.00 0.00 0.00 3.58
5207 6209 2.983592 GACCACCGGCAACAAGGG 60.984 66.667 0.00 0.00 0.00 3.95
5227 6230 9.952188 GCTTCTAGTTAATCAACAAAAGAAGTT 57.048 29.630 14.85 0.00 42.68 2.66
5228 6231 9.120538 TGCTTCTAGTTAATCAACAAAAGAAGT 57.879 29.630 14.85 0.00 42.68 3.01
5229 6232 9.950680 TTGCTTCTAGTTAATCAACAAAAGAAG 57.049 29.630 11.44 11.44 43.05 2.85
5233 6236 9.474920 CCATTTGCTTCTAGTTAATCAACAAAA 57.525 29.630 0.00 0.00 37.10 2.44
5234 6237 8.855110 TCCATTTGCTTCTAGTTAATCAACAAA 58.145 29.630 0.00 0.00 37.10 2.83
5235 6238 8.296713 GTCCATTTGCTTCTAGTTAATCAACAA 58.703 33.333 0.00 0.00 37.10 2.83
5236 6239 7.446931 TGTCCATTTGCTTCTAGTTAATCAACA 59.553 33.333 0.00 0.00 37.10 3.33
5237 6240 7.816640 TGTCCATTTGCTTCTAGTTAATCAAC 58.183 34.615 0.00 0.00 34.67 3.18
5238 6241 7.994425 TGTCCATTTGCTTCTAGTTAATCAA 57.006 32.000 0.00 0.00 0.00 2.57
5239 6242 7.994425 TTGTCCATTTGCTTCTAGTTAATCA 57.006 32.000 0.00 0.00 0.00 2.57
5243 6246 9.120538 GGATAATTGTCCATTTGCTTCTAGTTA 57.879 33.333 15.82 0.00 38.20 2.24
5244 6247 7.836183 AGGATAATTGTCCATTTGCTTCTAGTT 59.164 33.333 21.83 0.00 40.90 2.24
5245 6248 7.349598 AGGATAATTGTCCATTTGCTTCTAGT 58.650 34.615 21.83 0.00 40.90 2.57
5248 6251 7.486407 AAAGGATAATTGTCCATTTGCTTCT 57.514 32.000 21.83 0.00 40.90 2.85
5249 6252 7.009540 CGAAAAGGATAATTGTCCATTTGCTTC 59.990 37.037 23.72 11.92 38.78 3.86
5250 6253 6.813152 CGAAAAGGATAATTGTCCATTTGCTT 59.187 34.615 23.72 7.14 38.78 3.91
5251 6254 6.332630 CGAAAAGGATAATTGTCCATTTGCT 58.667 36.000 23.72 5.58 38.78 3.91
5253 6256 5.519927 GGCGAAAAGGATAATTGTCCATTTG 59.480 40.000 23.72 19.67 38.78 2.32
5254 6257 5.660460 GGCGAAAAGGATAATTGTCCATTT 58.340 37.500 20.23 20.23 40.69 2.32
5257 6260 2.680841 CGGCGAAAAGGATAATTGTCCA 59.319 45.455 21.83 0.00 40.90 4.02
5258 6261 2.681344 ACGGCGAAAAGGATAATTGTCC 59.319 45.455 16.62 13.10 38.62 4.02
5260 6263 2.159435 GCACGGCGAAAAGGATAATTGT 60.159 45.455 16.62 0.00 0.00 2.71
5263 6266 1.400494 GTGCACGGCGAAAAGGATAAT 59.600 47.619 16.62 0.00 0.00 1.28
5265 6268 0.036765 AGTGCACGGCGAAAAGGATA 60.037 50.000 16.62 0.00 0.00 2.59
5266 6269 0.889186 AAGTGCACGGCGAAAAGGAT 60.889 50.000 16.62 0.00 0.00 3.24
5272 12875 0.604243 ATAACCAAGTGCACGGCGAA 60.604 50.000 16.62 0.00 0.00 4.70
5275 12878 1.241315 ACCATAACCAAGTGCACGGC 61.241 55.000 12.01 0.00 0.00 5.68
5288 12891 6.493115 ACTGATCCAAAACATCACAACCATAA 59.507 34.615 0.00 0.00 0.00 1.90
5289 12892 6.009589 ACTGATCCAAAACATCACAACCATA 58.990 36.000 0.00 0.00 0.00 2.74
5291 12894 4.037803 CACTGATCCAAAACATCACAACCA 59.962 41.667 0.00 0.00 0.00 3.67
5299 12902 7.341030 TCATATGAGTCACTGATCCAAAACAT 58.659 34.615 0.00 0.00 0.00 2.71
5310 12943 3.188667 GCCATGCATCATATGAGTCACTG 59.811 47.826 11.78 5.29 0.00 3.66
5311 12944 3.409570 GCCATGCATCATATGAGTCACT 58.590 45.455 11.78 0.00 0.00 3.41
5312 12945 2.159037 CGCCATGCATCATATGAGTCAC 59.841 50.000 11.78 1.28 0.00 3.67
5326 12959 0.039798 CTGGAATACATGCGCCATGC 60.040 55.000 16.43 0.00 44.80 4.06
5327 12960 0.594602 CCTGGAATACATGCGCCATG 59.405 55.000 4.18 11.55 46.18 3.66
5328 12961 1.174712 GCCTGGAATACATGCGCCAT 61.175 55.000 4.18 0.00 31.11 4.40
5329 12962 1.823470 GCCTGGAATACATGCGCCA 60.823 57.895 4.18 0.00 31.11 5.69
5335 13126 5.163099 TGCCAATTAGTAGCCTGGAATACAT 60.163 40.000 0.00 0.00 0.00 2.29
5337 13128 4.515567 GTGCCAATTAGTAGCCTGGAATAC 59.484 45.833 0.00 0.00 0.00 1.89
5340 13131 2.356741 GGTGCCAATTAGTAGCCTGGAA 60.357 50.000 0.00 0.00 0.00 3.53
5343 13134 2.717639 AGGTGCCAATTAGTAGCCTG 57.282 50.000 0.00 0.00 0.00 4.85
5346 13137 3.840124 ACCTAGGTGCCAATTAGTAGC 57.160 47.619 15.42 0.00 0.00 3.58
5348 13139 6.267014 GTCATCTACCTAGGTGCCAATTAGTA 59.733 42.308 25.33 0.00 34.44 1.82
5351 13142 4.966168 TGTCATCTACCTAGGTGCCAATTA 59.034 41.667 25.33 0.91 34.44 1.40
5354 13145 2.827755 TGTCATCTACCTAGGTGCCAA 58.172 47.619 25.33 2.97 34.44 4.52
5355 13146 2.543037 TGTCATCTACCTAGGTGCCA 57.457 50.000 25.33 8.19 34.44 4.92


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.