AutoCloner

Multiple sequence alignment - TraesCS6B01G031900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS6B01G031900	chr6B	100.000	2224	0	0	1	2224	18747393	18749616	0.000000e+00	4108.0
1	TraesCS6B01G031900	chr6B	88.199	483	22	12	1533	2009	18569954	18569501	5.400000e-151	544.0
2	TraesCS6B01G031900	chr6B	87.805	82	7	3	1803	1881	18655763	18655844	2.350000e-15	93.5
3	TraesCS6B01G031900	chr3B	98.043	1482	16	1	1	1469	101907472	101908953	0.000000e+00	2564.0
4	TraesCS6B01G031900	chr1D	97.365	1480	24	4	3	1469	254447708	254446231	0.000000e+00	2503.0
5	TraesCS6B01G031900	chr1D	96.829	1482	34	1	1	1469	51859360	51860841	0.000000e+00	2464.0
6	TraesCS6B01G031900	chr1D	97.592	872	21	0	1	872	246464829	246463958	0.000000e+00	1495.0
7	TraesCS6B01G031900	chr5D	97.233	1482	27	2	1	1469	6164241	6165721	0.000000e+00	2497.0
8	TraesCS6B01G031900	chr5D	97.233	1482	26	4	1	1469	503304543	503303064	0.000000e+00	2495.0
9	TraesCS6B01G031900	chr5D	96.896	1482	32	2	1	1469	329151178	329152658	0.000000e+00	2470.0
10	TraesCS6B01G031900	chr5D	97.812	1234	14	1	249	1469	6263515	6264748	0.000000e+00	2117.0
11	TraesCS6B01G031900	chr5D	98.485	924	14	0	1	924	6262232	6263155	0.000000e+00	1629.0
12	TraesCS6B01G031900	chr4A	95.884	1482	47	2	1	1469	309477647	309479127	0.000000e+00	2386.0
13	TraesCS6B01G031900	chr4D	95.908	1442	42	4	41	1469	19881121	19879684	0.000000e+00	2320.0
14	TraesCS6B01G031900	chr6A	88.419	544	33	11	1469	2009	11599705	11600221	1.450000e-176	628.0
15	TraesCS6B01G031900	chr6A	88.462	130	6	9	1794	1916	11568403	11568530	4.950000e-32	148.0
16	TraesCS6B01G031900	chr6A	76.617	201	18	16	2024	2223	11600206	11600378	1.420000e-12	84.2
17	TraesCS6B01G031900	chr6D	86.447	546	42	16	1469	2009	10169161	10169679	8.910000e-159	569.0
18	TraesCS6B01G031900	chr6D	91.436	397	17	6	1469	1863	10112853	10113234	1.510000e-146	529.0
19	TraesCS6B01G031900	chr6D	83.607	549	46	12	1470	2009	9985731	9985218	2.000000e-130	475.0
20	TraesCS6B01G031900	chr6D	88.636	132	6	6	1794	1916	10065780	10065911	3.830000e-33	152.0
21	TraesCS6B01G031900	chr6D	90.654	107	8	2	1904	2009	10113233	10113338	8.280000e-30	141.0
22	TraesCS6B01G031900	chr6D	80.928	194	18	12	2024	2217	10113323	10113497	3.850000e-28	135.0
23	TraesCS6B01G031900	chr6D	76.263	198	21	8	2024	2221	10169664	10169835	5.090000e-12	82.4

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS6B01G031900	chr6B	18747393	18749616	2223	False	4108.000000	4108	100.000000	1	2224	1	chr6B.!!$F2	2223
1	TraesCS6B01G031900	chr3B	101907472	101908953	1481	False	2564.000000	2564	98.043000	1	1469	1	chr3B.!!$F1	1468
2	TraesCS6B01G031900	chr1D	254446231	254447708	1477	True	2503.000000	2503	97.365000	3	1469	1	chr1D.!!$R2	1466
3	TraesCS6B01G031900	chr1D	51859360	51860841	1481	False	2464.000000	2464	96.829000	1	1469	1	chr1D.!!$F1	1468
4	TraesCS6B01G031900	chr1D	246463958	246464829	871	True	1495.000000	1495	97.592000	1	872	1	chr1D.!!$R1	871
5	TraesCS6B01G031900	chr5D	6164241	6165721	1480	False	2497.000000	2497	97.233000	1	1469	1	chr5D.!!$F1	1468
6	TraesCS6B01G031900	chr5D	503303064	503304543	1479	True	2495.000000	2495	97.233000	1	1469	1	chr5D.!!$R1	1468
7	TraesCS6B01G031900	chr5D	329151178	329152658	1480	False	2470.000000	2470	96.896000	1	1469	1	chr5D.!!$F2	1468
8	TraesCS6B01G031900	chr5D	6262232	6264748	2516	False	1873.000000	2117	98.148500	1	1469	2	chr5D.!!$F3	1468
9	TraesCS6B01G031900	chr4A	309477647	309479127	1480	False	2386.000000	2386	95.884000	1	1469	1	chr4A.!!$F1	1468
10	TraesCS6B01G031900	chr4D	19879684	19881121	1437	True	2320.000000	2320	95.908000	41	1469	1	chr4D.!!$R1	1428
11	TraesCS6B01G031900	chr6A	11599705	11600378	673	False	356.100000	628	82.518000	1469	2223	2	chr6A.!!$F2	754
12	TraesCS6B01G031900	chr6D	9985218	9985731	513	True	475.000000	475	83.607000	1470	2009	1	chr6D.!!$R1	539
13	TraesCS6B01G031900	chr6D	10169161	10169835	674	False	325.700000	569	81.355000	1469	2221	2	chr6D.!!$F3	752
14	TraesCS6B01G031900	chr6D	10112853	10113497	644	False	268.333333	529	87.672667	1469	2217	3	chr6D.!!$F2	748

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
942	1993	1.115326	AACAGGTTGCTCAAAGGGGC	61.115	55.0	0.0	0.0	0.0	5.8	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2185	3251	0.248094	CTGCATGCATGTGCTCTTCG	60.248	55.0	26.79	0.79	45.27	3.79	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
23	24	5.340803	GCAATTTCCTCTTCGAATAAACCC	58.659	41.667	0.00	0.00	0.00	4.11
106	108	2.881111	AGGCCCTCCAACTTCTTAAC	57.119	50.000	0.00	0.00	33.74	2.01
226	229	3.710326	TCGTATCCGAGAATCCACAAG	57.290	47.619	0.00	0.00	38.40	3.16
336	1374	3.780804	TGGGTCCAAAGATTCTTTCGA	57.219	42.857	8.71	5.57	0.00	3.71
356	1394	8.709386	TTTCGAAAAACAATCCATCTTTTTCA	57.291	26.923	8.44	1.63	41.13	2.69
711	1749	4.900635	AGCATTAAGTATTTCTTGGCGG	57.099	40.909	0.00	0.00	37.56	6.13
942	1993	1.115326	AACAGGTTGCTCAAAGGGGC	61.115	55.000	0.00	0.00	0.00	5.80
1161	2212	6.034898	GCTTTCAAATATTTGTCCCACATTCG	59.965	38.462	23.95	6.88	39.18	3.34
1313	2364	4.160626	TCCCCAACTTTGATTTCACGTTTT	59.839	37.500	0.00	0.00	0.00	2.43
1380	2431	4.750098	GGATCCATTTCACATCGATAACGT	59.250	41.667	6.95	0.00	40.69	3.99
1477	2528	7.307396	CCGTAATAATCCAGCTTCACTACATTG	60.307	40.741	0.00	0.00	0.00	2.82
1593	2646	7.222224	GCAGAGGAAAGAAGCATATTTTTCATG	59.778	37.037	0.00	0.00	32.57	3.07
1613	2666	2.975410	CATATGGTGCCATGTTAGCG	57.025	50.000	13.57	0.00	37.82	4.26
1697	2752	0.320697	GTGGTCAGGGACACAGGTAC	59.679	60.000	0.00	0.00	33.68	3.34
1701	2756	0.485543	TCAGGGACACAGGTACAGGA	59.514	55.000	0.00	0.00	0.00	3.86
1704	2759	0.036294	GGGACACAGGTACAGGAAGC	60.036	60.000	0.00	0.00	0.00	3.86
1705	2760	0.389948	GGACACAGGTACAGGAAGCG	60.390	60.000	0.00	0.00	0.00	4.68
1706	2761	0.601558	GACACAGGTACAGGAAGCGA	59.398	55.000	0.00	0.00	0.00	4.93
1707	2762	0.317479	ACACAGGTACAGGAAGCGAC	59.683	55.000	0.00	0.00	0.00	5.19
1708	2763	0.389948	CACAGGTACAGGAAGCGACC	60.390	60.000	0.00	0.00	0.00	4.79
1709	2764	1.218316	CAGGTACAGGAAGCGACCC	59.782	63.158	0.00	0.00	31.93	4.46
1710	2765	2.183555	GGTACAGGAAGCGACCCG	59.816	66.667	0.00	0.00	0.00	5.28
1711	2766	2.345760	GGTACAGGAAGCGACCCGA	61.346	63.158	0.00	0.00	0.00	5.14
1712	2767	1.153881	GTACAGGAAGCGACCCGAC	60.154	63.158	0.00	0.00	0.00	4.79
1713	2768	1.604308	TACAGGAAGCGACCCGACA	60.604	57.895	0.00	0.00	0.00	4.35
1714	2769	1.592400	TACAGGAAGCGACCCGACAG	61.592	60.000	0.00	0.00	0.00	3.51
1715	2770	3.382832	AGGAAGCGACCCGACAGG	61.383	66.667	0.00	0.00	43.78	4.00
1893	2950	2.055689	CTGGGATTGAGGCCGGCATA	62.056	60.000	30.85	7.58	0.00	3.14
1939	2996	6.605995	GTGCTTAGTACCCCCAATAATTTCTT	59.394	38.462	0.00	0.00	0.00	2.52
1962	3022	9.673283	TCTTTTTCATCCAATAATCCCCATTAT	57.327	29.630	0.00	0.00	36.85	1.28
1975	3035	3.195396	TCCCCATTATTTTGTGCAAGAGC	59.805	43.478	0.00	0.00	42.57	4.09
1987	3051	0.924090	GCAAGAGCGGTGTAGATTCG	59.076	55.000	0.00	0.00	0.00	3.34
1994	3058	3.661745	GGTGTAGATTCGCCGTGAT	57.338	52.632	0.00	0.00	0.00	3.06
1995	3059	2.787601	GGTGTAGATTCGCCGTGATA	57.212	50.000	0.00	0.00	0.00	2.15
1996	3060	3.088194	GGTGTAGATTCGCCGTGATAA	57.912	47.619	0.00	0.00	0.00	1.75
1997	3061	3.650139	GGTGTAGATTCGCCGTGATAAT	58.350	45.455	0.00	0.00	0.00	1.28
1998	3062	4.056050	GGTGTAGATTCGCCGTGATAATT	58.944	43.478	0.00	0.00	0.00	1.40
1999	3063	4.084537	GGTGTAGATTCGCCGTGATAATTG	60.085	45.833	0.00	0.00	0.00	2.32
2000	3064	4.506654	GTGTAGATTCGCCGTGATAATTGT	59.493	41.667	0.00	0.00	0.00	2.71
2001	3065	5.006358	GTGTAGATTCGCCGTGATAATTGTT	59.994	40.000	0.00	0.00	0.00	2.83
2002	3066	4.795970	AGATTCGCCGTGATAATTGTTC	57.204	40.909	0.00	0.00	0.00	3.18
2003	3067	3.245284	AGATTCGCCGTGATAATTGTTCG	59.755	43.478	0.00	0.00	0.00	3.95
2004	3068	0.648441	TCGCCGTGATAATTGTTCGC	59.352	50.000	0.00	0.00	0.00	4.70
2005	3069	0.315869	CGCCGTGATAATTGTTCGCC	60.316	55.000	0.00	0.00	0.00	5.54
2006	3070	0.730265	GCCGTGATAATTGTTCGCCA	59.270	50.000	0.00	0.00	0.00	5.69
2007	3071	1.131504	GCCGTGATAATTGTTCGCCAA	59.868	47.619	0.00	0.00	37.49	4.52
2008	3072	2.223479	GCCGTGATAATTGTTCGCCAAT	60.223	45.455	0.00	0.00	45.81	3.16
2009	3073	3.617669	CCGTGATAATTGTTCGCCAATC	58.382	45.455	1.38	0.00	43.04	2.67
2010	3074	3.548014	CCGTGATAATTGTTCGCCAATCC	60.548	47.826	1.38	0.00	43.04	3.01
2011	3075	3.064682	CGTGATAATTGTTCGCCAATCCA	59.935	43.478	1.38	0.00	43.04	3.41
2012	3076	4.601019	GTGATAATTGTTCGCCAATCCAG	58.399	43.478	1.38	0.00	43.04	3.86
2013	3077	4.096382	GTGATAATTGTTCGCCAATCCAGT	59.904	41.667	1.38	0.00	43.04	4.00
2014	3078	4.335315	TGATAATTGTTCGCCAATCCAGTC	59.665	41.667	1.38	0.36	43.04	3.51
2015	3079	2.496899	ATTGTTCGCCAATCCAGTCT	57.503	45.000	0.00	0.00	39.66	3.24
2016	3080	3.627395	ATTGTTCGCCAATCCAGTCTA	57.373	42.857	0.00	0.00	39.66	2.59
2017	3081	3.410631	TTGTTCGCCAATCCAGTCTAA	57.589	42.857	0.00	0.00	0.00	2.10
2018	3082	3.410631	TGTTCGCCAATCCAGTCTAAA	57.589	42.857	0.00	0.00	0.00	1.85
2019	3083	3.745799	TGTTCGCCAATCCAGTCTAAAA	58.254	40.909	0.00	0.00	0.00	1.52
2020	3084	4.138290	TGTTCGCCAATCCAGTCTAAAAA	58.862	39.130	0.00	0.00	0.00	1.94
2055	3119	7.189693	TCGCCAATAATGCACTATTCTAAAG	57.810	36.000	0.00	0.00	0.00	1.85
2082	3147	7.151999	AGTAGTATCTGACAGCTATGTATGC	57.848	40.000	0.00	0.00	40.68	3.14
2092	3157	2.168521	AGCTATGTATGCGGACTTGTGT	59.831	45.455	0.00	0.00	35.28	3.72
2094	3159	3.738281	GCTATGTATGCGGACTTGTGTCT	60.738	47.826	0.00	0.00	42.54	3.41
2095	3160	2.831685	TGTATGCGGACTTGTGTCTT	57.168	45.000	0.00	0.00	42.54	3.01
2096	3161	2.412870	TGTATGCGGACTTGTGTCTTG	58.587	47.619	0.00	0.00	42.54	3.02
2097	3162	2.224185	TGTATGCGGACTTGTGTCTTGT	60.224	45.455	0.00	0.00	42.54	3.16
2098	3163	1.229428	ATGCGGACTTGTGTCTTGTG	58.771	50.000	0.00	0.00	42.54	3.33
2099	3164	1.279840	GCGGACTTGTGTCTTGTGC	59.720	57.895	0.00	0.00	42.54	4.57
2100	3165	1.941812	CGGACTTGTGTCTTGTGCC	59.058	57.895	0.00	0.00	42.54	5.01
2102	3167	0.531974	GGACTTGTGTCTTGTGCCGA	60.532	55.000	0.00	0.00	42.54	5.54
2103	3168	0.861837	GACTTGTGTCTTGTGCCGAG	59.138	55.000	0.00	0.00	39.94	4.63
2104	3169	0.178068	ACTTGTGTCTTGTGCCGAGT	59.822	50.000	0.00	0.00	0.00	4.18
2139	3205	2.067365	ATCATCAGCACATGCATGGT	57.933	45.000	29.41	13.14	45.16	3.55
2141	3207	0.102300	CATCAGCACATGCATGGTGG	59.898	55.000	29.41	18.97	45.98	4.61
2142	3208	1.040893	ATCAGCACATGCATGGTGGG	61.041	55.000	29.41	16.63	45.98	4.61
2143	3209	1.679641	CAGCACATGCATGGTGGGA	60.680	57.895	29.41	0.00	42.99	4.37
2144	3210	1.077086	AGCACATGCATGGTGGGAA	59.923	52.632	29.41	0.00	45.16	3.97
2145	3211	0.324923	AGCACATGCATGGTGGGAAT	60.325	50.000	29.41	4.72	45.16	3.01
2146	3212	0.179094	GCACATGCATGGTGGGAATG	60.179	55.000	29.41	17.50	41.59	2.67
2147	3213	1.187974	CACATGCATGGTGGGAATGT	58.812	50.000	29.41	4.73	32.65	2.71
2148	3214	2.377073	CACATGCATGGTGGGAATGTA	58.623	47.619	29.41	0.00	32.65	2.29
2149	3215	2.960384	CACATGCATGGTGGGAATGTAT	59.040	45.455	29.41	1.84	31.46	2.29
2150	3216	3.653539	CATGCATGGTGGGAATGTATG	57.346	47.619	19.40	1.08	40.26	2.39
2151	3217	2.824689	TGCATGGTGGGAATGTATGT	57.175	45.000	0.00	0.00	0.00	2.29
2158	3224	5.966853	TGGTGGGAATGTATGTAGATCAA	57.033	39.130	0.00	0.00	0.00	2.57
2171	3237	9.337396	TGTATGTAGATCAAACAAAAGAACAGT	57.663	29.630	5.17	0.00	0.00	3.55
2185	3251	5.715434	AAGAACAGTACTTCTCTGGAGTC	57.285	43.478	0.00	0.00	37.25	3.36
2223	3289	4.018506	TGCAGGACATGGATAAGAAAGGAA	60.019	41.667	0.00	0.00	0.00	3.36

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
106	108	6.583912	TCGCGAATCTTTTAGATAAACCTG	57.416	37.500	6.20	0.00	32.89	4.00
226	229	1.403647	GCCAAAAATGCGGGGTAGAAC	60.404	52.381	0.00	0.00	0.00	3.01
310	1348	7.029563	CGAAAGAATCTTTGGACCCATAAAAG	58.970	38.462	13.55	0.00	33.19	2.27
336	1374	8.806429	AAACCTGAAAAAGATGGATTGTTTTT	57.194	26.923	0.00	0.00	36.36	1.94
942	1993	1.533625	TTTGATGGAAGAACAGGCGG	58.466	50.000	0.00	0.00	0.00	6.13
1325	2376	2.029244	GCTCGACATAATGGTTCGTGTG	59.971	50.000	0.00	0.00	0.00	3.82
1380	2431	2.103153	CCTATAGGTGGAAGAGGGCA	57.897	55.000	10.96	0.00	0.00	5.36
1477	2528	4.554919	GCCGAGAGACAAGAAAGGAAAAAC	60.555	45.833	0.00	0.00	0.00	2.43
1595	2648	2.158827	TGTCGCTAACATGGCACCATAT	60.159	45.455	0.89	0.00	34.91	1.78
1596	2649	1.208293	TGTCGCTAACATGGCACCATA	59.792	47.619	0.89	0.00	34.91	2.74
1597	2650	0.035534	TGTCGCTAACATGGCACCAT	60.036	50.000	0.00	0.00	37.08	3.55
1609	2662	4.492160	CGCTTCCGCCTGTCGCTA	62.492	66.667	0.00	0.00	36.73	4.26
1697	2752	2.125912	CTGTCGGGTCGCTTCCTG	60.126	66.667	0.00	0.00	35.33	3.86
1709	2764	1.227089	CTGGATCTTCCGCCTGTCG	60.227	63.158	0.00	0.00	40.17	4.35
1710	2765	0.537188	TTCTGGATCTTCCGCCTGTC	59.463	55.000	0.00	0.00	40.17	3.51
1711	2766	1.139853	GATTCTGGATCTTCCGCCTGT	59.860	52.381	0.00	0.00	40.17	4.00
1712	2767	1.415659	AGATTCTGGATCTTCCGCCTG	59.584	52.381	0.00	0.00	42.55	4.85
1713	2768	1.799933	AGATTCTGGATCTTCCGCCT	58.200	50.000	0.00	0.00	42.55	5.52
1943	3001	7.388500	GCACAAAATAATGGGGATTATTGGATG	59.612	37.037	0.00	0.00	36.96	3.51
1962	3022	1.601903	CTACACCGCTCTTGCACAAAA	59.398	47.619	0.00	0.00	39.64	2.44
1987	3051	0.730265	TGGCGAACAATTATCACGGC	59.270	50.000	0.00	0.00	46.51	5.68
1997	3061	3.410631	TTAGACTGGATTGGCGAACAA	57.589	42.857	0.00	0.00	44.54	2.83
1998	3062	3.410631	TTTAGACTGGATTGGCGAACA	57.589	42.857	0.00	0.00	0.00	3.18
1999	3063	4.759516	TTTTTAGACTGGATTGGCGAAC	57.240	40.909	0.00	0.00	0.00	3.95
2019	3083	8.174422	GTGCATTATTGGCGAACAAATATTTTT	58.826	29.630	0.00	0.00	43.46	1.94
2020	3084	7.548780	AGTGCATTATTGGCGAACAAATATTTT	59.451	29.630	0.00	0.00	43.46	1.82
2021	3085	7.041107	AGTGCATTATTGGCGAACAAATATTT	58.959	30.769	0.00	0.00	43.46	1.40
2022	3086	6.572519	AGTGCATTATTGGCGAACAAATATT	58.427	32.000	0.00	0.00	43.46	1.28
2026	3090	3.932545	AGTGCATTATTGGCGAACAAA	57.067	38.095	0.00	0.00	43.46	2.83
2062	3127	4.082733	TCCGCATACATAGCTGTCAGATAC	60.083	45.833	3.32	0.00	36.79	2.24
2063	3128	4.079253	TCCGCATACATAGCTGTCAGATA	58.921	43.478	3.32	1.19	36.79	1.98
2064	3129	2.893489	TCCGCATACATAGCTGTCAGAT	59.107	45.455	3.32	0.00	36.79	2.90
2065	3130	2.034685	GTCCGCATACATAGCTGTCAGA	59.965	50.000	3.32	0.00	36.79	3.27
2071	3136	2.168521	ACACAAGTCCGCATACATAGCT	59.831	45.455	0.00	0.00	0.00	3.32
2073	3138	4.046938	AGACACAAGTCCGCATACATAG	57.953	45.455	0.00	0.00	46.15	2.23
2082	3147	1.831389	CGGCACAAGACACAAGTCCG	61.831	60.000	0.00	0.00	46.15	4.79
2092	3157	2.258591	GCGAGACTCGGCACAAGA	59.741	61.111	25.31	0.00	40.84	3.02
2094	3159	2.049156	CTGCGAGACTCGGCACAA	60.049	61.111	25.31	2.99	40.84	3.33
2095	3160	4.056125	CCTGCGAGACTCGGCACA	62.056	66.667	25.31	14.09	40.84	4.57
2098	3163	4.742201	TTGCCTGCGAGACTCGGC	62.742	66.667	25.31	19.77	40.84	5.54
2099	3164	2.169789	CATTGCCTGCGAGACTCGG	61.170	63.158	25.31	10.75	40.84	4.63
2100	3165	2.806856	GCATTGCCTGCGAGACTCG	61.807	63.158	20.56	20.56	41.97	4.18
2139	3205	8.642935	TTTTGTTTGATCTACATACATTCCCA	57.357	30.769	0.00	0.00	39.40	4.37
2140	3206	8.956426	TCTTTTGTTTGATCTACATACATTCCC	58.044	33.333	0.00	0.00	39.40	3.97
2145	3211	9.337396	ACTGTTCTTTTGTTTGATCTACATACA	57.663	29.630	0.00	0.00	38.33	2.29
2148	3214	9.561069	AGTACTGTTCTTTTGTTTGATCTACAT	57.439	29.630	0.00	0.00	0.00	2.29
2149	3215	8.958119	AGTACTGTTCTTTTGTTTGATCTACA	57.042	30.769	0.00	0.00	0.00	2.74
2150	3216	9.865484	GAAGTACTGTTCTTTTGTTTGATCTAC	57.135	33.333	0.00	0.00	0.00	2.59
2151	3217	9.832445	AGAAGTACTGTTCTTTTGTTTGATCTA	57.168	29.630	0.00	0.00	32.59	1.98
2158	3224	6.650120	TCCAGAGAAGTACTGTTCTTTTGTT	58.350	36.000	0.00	0.00	36.89	2.83
2171	3237	3.011119	GCTCTTCGACTCCAGAGAAGTA	58.989	50.000	14.62	0.00	41.36	2.24
2173	3239	1.815613	TGCTCTTCGACTCCAGAGAAG	59.184	52.381	14.62	4.11	39.21	2.85
2185	3251	0.248094	CTGCATGCATGTGCTCTTCG	60.248	55.000	26.79	0.79	45.27	3.79

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.