Multiple sequence alignment - TraesCS6B01G031800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G031800 chr6B 100.000 2711 0 0 1 2711 18741906 18739196 0.000000e+00 5007.0
1 TraesCS6B01G031800 chr6B 94.286 245 13 1 2468 2711 18570748 18570992 9.170000e-100 374.0
2 TraesCS6B01G031800 chr6B 98.485 66 1 0 1731 1796 18570000 18570065 1.710000e-22 117.0
3 TraesCS6B01G031800 chr6B 86.792 106 10 3 1901 2004 439395735 439395632 6.130000e-22 115.0
4 TraesCS6B01G031800 chr1A 98.103 1740 25 4 1 1735 554478618 554480354 0.000000e+00 3024.0
5 TraesCS6B01G031800 chr1A 91.954 87 7 0 1907 1993 389064535 389064621 3.670000e-24 122.0
6 TraesCS6B01G031800 chr3A 98.099 1736 29 2 1 1735 105560596 105558864 0.000000e+00 3020.0
7 TraesCS6B01G031800 chr3A 94.048 84 4 1 1902 1985 692055441 692055359 2.830000e-25 126.0
8 TraesCS6B01G031800 chr3A 89.583 96 8 2 1897 1992 712686178 712686271 1.320000e-23 121.0
9 TraesCS6B01G031800 chr7B 97.784 1715 33 3 1 1714 137682781 137684491 0.000000e+00 2952.0
10 TraesCS6B01G031800 chr7B 91.954 87 7 0 1899 1985 173865788 173865874 3.670000e-24 122.0
11 TraesCS6B01G031800 chr1B 97.409 1737 34 7 1 1735 633713346 633715073 0.000000e+00 2948.0
12 TraesCS6B01G031800 chr1B 93.376 1736 98 11 1 1735 427665004 427663285 0.000000e+00 2553.0
13 TraesCS6B01G031800 chr1D 96.025 1736 57 9 1 1735 51835582 51833858 0.000000e+00 2813.0
14 TraesCS6B01G031800 chr4A 95.512 1738 68 6 1 1735 309450022 309448292 0.000000e+00 2769.0
15 TraesCS6B01G031800 chrUn 98.023 1568 26 3 77 1643 388893553 388895116 0.000000e+00 2719.0
16 TraesCS6B01G031800 chr4D 94.792 1728 76 8 4 1730 206973238 206971524 0.000000e+00 2680.0
17 TraesCS6B01G031800 chr6D 93.776 723 43 2 1990 2711 10112677 10111956 0.000000e+00 1085.0
18 TraesCS6B01G031800 chr6D 91.667 732 53 4 1983 2711 10168996 10168270 0.000000e+00 1007.0
19 TraesCS6B01G031800 chr6D 95.219 502 21 3 2213 2711 10110771 10110270 0.000000e+00 791.0
20 TraesCS6B01G031800 chr6D 89.308 159 13 3 1731 1886 10112851 10112694 2.130000e-46 196.0
21 TraesCS6B01G031800 chr6D 91.803 61 3 1 1728 1786 10169145 10169085 1.730000e-12 84.2
22 TraesCS6B01G031800 chr6A 93.094 724 48 2 1990 2711 11599529 11598806 0.000000e+00 1059.0
23 TraesCS6B01G031800 chr2D 92.941 85 6 0 1901 1985 432744387 432744303 1.020000e-24 124.0
24 TraesCS6B01G031800 chr7A 88.776 98 11 0 1898 1995 612375604 612375701 1.320000e-23 121.0
25 TraesCS6B01G031800 chr4B 91.011 89 8 0 1901 1989 423050995 423051083 1.320000e-23 121.0
26 TraesCS6B01G031800 chr2B 91.667 84 7 0 1902 1985 239852611 239852694 1.710000e-22 117.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G031800 chr6B 18739196 18741906 2710 True 5007.000000 5007 100.000000 1 2711 1 chr6B.!!$R1 2710
1 TraesCS6B01G031800 chr6B 18570000 18570992 992 False 245.500000 374 96.385500 1731 2711 2 chr6B.!!$F1 980
2 TraesCS6B01G031800 chr1A 554478618 554480354 1736 False 3024.000000 3024 98.103000 1 1735 1 chr1A.!!$F2 1734
3 TraesCS6B01G031800 chr3A 105558864 105560596 1732 True 3020.000000 3020 98.099000 1 1735 1 chr3A.!!$R1 1734
4 TraesCS6B01G031800 chr7B 137682781 137684491 1710 False 2952.000000 2952 97.784000 1 1714 1 chr7B.!!$F1 1713
5 TraesCS6B01G031800 chr1B 633713346 633715073 1727 False 2948.000000 2948 97.409000 1 1735 1 chr1B.!!$F1 1734
6 TraesCS6B01G031800 chr1B 427663285 427665004 1719 True 2553.000000 2553 93.376000 1 1735 1 chr1B.!!$R1 1734
7 TraesCS6B01G031800 chr1D 51833858 51835582 1724 True 2813.000000 2813 96.025000 1 1735 1 chr1D.!!$R1 1734
8 TraesCS6B01G031800 chr4A 309448292 309450022 1730 True 2769.000000 2769 95.512000 1 1735 1 chr4A.!!$R1 1734
9 TraesCS6B01G031800 chrUn 388893553 388895116 1563 False 2719.000000 2719 98.023000 77 1643 1 chrUn.!!$F1 1566
10 TraesCS6B01G031800 chr4D 206971524 206973238 1714 True 2680.000000 2680 94.792000 4 1730 1 chr4D.!!$R1 1726
11 TraesCS6B01G031800 chr6D 10110270 10112851 2581 True 690.666667 1085 92.767667 1731 2711 3 chr6D.!!$R1 980
12 TraesCS6B01G031800 chr6D 10168270 10169145 875 True 545.600000 1007 91.735000 1728 2711 2 chr6D.!!$R2 983
13 TraesCS6B01G031800 chr6A 11598806 11599529 723 True 1059.000000 1059 93.094000 1990 2711 1 chr6A.!!$R1 721

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
552 558 2.436417 CATCGTTCCCCACAAGACAAT 58.564 47.619 0.0 0.0 0.0 2.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2345 2687 0.666274 TGTGTTCTCAGCGCTAACGG 60.666 55.0 10.99 0.0 40.57 4.44 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
552 558 2.436417 CATCGTTCCCCACAAGACAAT 58.564 47.619 0.00 0.00 0.00 2.71
568 574 9.329913 CACAAGACAATAACCTTTATTTCGAAG 57.670 33.333 0.00 0.00 0.00 3.79
778 791 8.747538 AGAACACTAACAGGTCAAATTTTAGT 57.252 30.769 0.00 0.00 34.10 2.24
940 953 9.620259 AGCTATTTCGGATCTTTCTTAATCTTT 57.380 29.630 0.00 0.00 0.00 2.52
1039 1054 8.761575 TTGGAACATTAATTTGAAAGAGATGC 57.238 30.769 0.00 0.00 39.30 3.91
1153 1168 6.564709 TTATAAATCTCGCTAGAACGGCTA 57.435 37.500 0.00 0.00 34.73 3.93
1426 1444 4.298103 AGAGATGTGGCAATCTTGAAGT 57.702 40.909 11.64 0.00 37.03 3.01
1683 1701 9.942850 AAATTAGTATTTTCAATTTGTGAGGGG 57.057 29.630 0.00 0.00 37.61 4.79
1798 1818 4.137116 AGATAGTTGTGTGTGTGTGTGT 57.863 40.909 0.00 0.00 0.00 3.72
1800 1820 1.890876 AGTTGTGTGTGTGTGTGTGT 58.109 45.000 0.00 0.00 0.00 3.72
1801 1821 1.535028 AGTTGTGTGTGTGTGTGTGTG 59.465 47.619 0.00 0.00 0.00 3.82
1802 1822 1.265635 GTTGTGTGTGTGTGTGTGTGT 59.734 47.619 0.00 0.00 0.00 3.72
1811 2151 0.761802 TGTGTGTGTGTGCAGGGATA 59.238 50.000 0.00 0.00 0.00 2.59
1873 2215 7.437793 AAAAATATCCACATGCAAAAACCAG 57.562 32.000 0.00 0.00 0.00 4.00
1886 2228 6.616947 TGCAAAAACCAGAATAATTCCTACG 58.383 36.000 0.00 0.00 0.00 3.51
1887 2229 6.431543 TGCAAAAACCAGAATAATTCCTACGA 59.568 34.615 0.00 0.00 0.00 3.43
1888 2230 6.745907 GCAAAAACCAGAATAATTCCTACGAC 59.254 38.462 0.00 0.00 0.00 4.34
1891 2233 9.729281 AAAAACCAGAATAATTCCTACGACTTA 57.271 29.630 0.00 0.00 0.00 2.24
1892 2234 8.943909 AAACCAGAATAATTCCTACGACTTAG 57.056 34.615 0.00 0.00 0.00 2.18
1893 2235 6.514063 ACCAGAATAATTCCTACGACTTAGC 58.486 40.000 0.00 0.00 0.00 3.09
1894 2236 6.097839 ACCAGAATAATTCCTACGACTTAGCA 59.902 38.462 0.00 0.00 0.00 3.49
1905 2247 8.059798 TCCTACGACTTAGCAAGTTTATACTT 57.940 34.615 0.00 0.00 45.40 2.24
1907 2249 7.434602 CCTACGACTTAGCAAGTTTATACTTCC 59.565 40.741 0.00 0.00 42.67 3.46
1908 2250 6.932947 ACGACTTAGCAAGTTTATACTTCCT 58.067 36.000 0.00 0.00 42.67 3.36
1909 2251 7.034397 ACGACTTAGCAAGTTTATACTTCCTC 58.966 38.462 0.00 0.00 42.67 3.71
1910 2252 7.093858 ACGACTTAGCAAGTTTATACTTCCTCT 60.094 37.037 0.00 0.00 42.67 3.69
1911 2253 7.221067 CGACTTAGCAAGTTTATACTTCCTCTG 59.779 40.741 0.00 0.00 42.67 3.35
1912 2254 7.908453 ACTTAGCAAGTTTATACTTCCTCTGT 58.092 34.615 0.00 0.00 42.67 3.41
1913 2255 9.032624 ACTTAGCAAGTTTATACTTCCTCTGTA 57.967 33.333 0.00 0.00 42.67 2.74
1914 2256 9.871238 CTTAGCAAGTTTATACTTCCTCTGTAA 57.129 33.333 0.00 0.00 42.67 2.41
1916 2258 8.549338 AGCAAGTTTATACTTCCTCTGTAAAC 57.451 34.615 0.00 0.00 42.67 2.01
1917 2259 8.154856 AGCAAGTTTATACTTCCTCTGTAAACA 58.845 33.333 8.46 0.00 42.67 2.83
1918 2260 8.780249 GCAAGTTTATACTTCCTCTGTAAACAA 58.220 33.333 8.46 0.00 42.67 2.83
1928 2270 9.384764 ACTTCCTCTGTAAACAAATATAAGAGC 57.615 33.333 0.00 0.00 0.00 4.09
1929 2271 8.420374 TTCCTCTGTAAACAAATATAAGAGCG 57.580 34.615 0.00 0.00 0.00 5.03
1930 2272 7.553334 TCCTCTGTAAACAAATATAAGAGCGT 58.447 34.615 0.00 0.00 0.00 5.07
1931 2273 8.038944 TCCTCTGTAAACAAATATAAGAGCGTT 58.961 33.333 0.00 0.00 0.00 4.84
1932 2274 8.665685 CCTCTGTAAACAAATATAAGAGCGTTT 58.334 33.333 0.00 0.00 0.00 3.60
1941 2283 9.764363 ACAAATATAAGAGCGTTTAGATCATCA 57.236 29.630 0.00 0.00 37.82 3.07
1949 2291 9.941664 AAGAGCGTTTAGATCATCAAAATAATG 57.058 29.630 0.00 0.00 37.82 1.90
1950 2292 9.113838 AGAGCGTTTAGATCATCAAAATAATGT 57.886 29.630 0.00 0.00 37.82 2.71
1951 2293 9.722056 GAGCGTTTAGATCATCAAAATAATGTT 57.278 29.630 0.00 0.00 34.89 2.71
1952 2294 9.722056 AGCGTTTAGATCATCAAAATAATGTTC 57.278 29.630 0.00 0.00 0.00 3.18
1953 2295 9.722056 GCGTTTAGATCATCAAAATAATGTTCT 57.278 29.630 0.00 0.00 37.14 3.01
1959 2301 9.722056 AGATCATCAAAATAATGTTCTAAACGC 57.278 29.630 0.00 0.00 33.50 4.84
1960 2302 9.722056 GATCATCAAAATAATGTTCTAAACGCT 57.278 29.630 0.00 0.00 0.00 5.07
1961 2303 9.722056 ATCATCAAAATAATGTTCTAAACGCTC 57.278 29.630 0.00 0.00 0.00 5.03
1962 2304 8.946085 TCATCAAAATAATGTTCTAAACGCTCT 58.054 29.630 0.00 0.00 0.00 4.09
1963 2305 9.559958 CATCAAAATAATGTTCTAAACGCTCTT 57.440 29.630 0.00 0.00 0.00 2.85
1980 2322 8.649973 AACGCTCTTATATTTCTTTACAGAGG 57.350 34.615 0.00 0.00 0.00 3.69
1981 2323 7.210873 ACGCTCTTATATTTCTTTACAGAGGG 58.789 38.462 8.36 8.36 42.53 4.30
1982 2324 7.069578 ACGCTCTTATATTTCTTTACAGAGGGA 59.930 37.037 14.96 0.00 40.49 4.20
1983 2325 7.596995 CGCTCTTATATTTCTTTACAGAGGGAG 59.403 40.741 4.76 0.00 40.49 4.30
1984 2326 8.425703 GCTCTTATATTTCTTTACAGAGGGAGT 58.574 37.037 0.00 0.00 0.00 3.85
1998 2340 9.886132 TTACAGAGGGAGTTCATAAGTAATTTC 57.114 33.333 0.00 0.00 0.00 2.17
2008 2350 7.231925 AGTTCATAAGTAATTTCCAAAACCCGT 59.768 33.333 0.00 0.00 0.00 5.28
2060 2402 2.224281 CGGCCTGTCCTGCTGATTAATA 60.224 50.000 0.00 0.00 37.27 0.98
2072 2414 7.121168 TCCTGCTGATTAATAGTGGACAAAAAG 59.879 37.037 0.00 0.00 0.00 2.27
2091 2433 7.884354 ACAAAAAGGATAAATCATTGCCACATT 59.116 29.630 0.00 0.00 30.42 2.71
2095 2437 4.101430 GGATAAATCATTGCCACATTGGGT 59.899 41.667 0.00 0.00 38.19 4.51
2123 2465 4.524316 TTATTGCAGCTTCATTGCTTGT 57.476 36.364 0.00 0.00 41.98 3.16
2172 2514 1.611043 GGAGACGGTTAGAAACGACG 58.389 55.000 6.72 0.00 0.00 5.12
2173 2515 1.068954 GGAGACGGTTAGAAACGACGT 60.069 52.381 6.72 0.00 40.85 4.34
2189 2531 2.750948 GACGTGAGAGCTAACAACCAA 58.249 47.619 0.00 0.00 0.00 3.67
2203 2545 2.295909 ACAACCAACACACATATGCACC 59.704 45.455 1.58 0.00 0.00 5.01
2253 2595 7.870509 AATCCTACCGGGTTCTTTAATTTAC 57.129 36.000 4.31 0.00 36.25 2.01
2337 2679 4.223032 AGGGTCATTACTAGTTGTGTGAGG 59.777 45.833 0.00 0.00 0.00 3.86
2345 2687 1.242076 AGTTGTGTGAGGCAATGCTC 58.758 50.000 4.82 1.40 0.00 4.26
2421 2763 1.268999 GGTCACACTTCATTTTGCGCA 60.269 47.619 5.66 5.66 0.00 6.09
2539 2883 0.318955 GCATGTTGCCTTGTCACCAC 60.319 55.000 0.00 0.00 37.42 4.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
568 574 5.502346 CCGACGCGAATAGTTTTCTTTTTAC 59.498 40.000 15.93 0.00 0.00 2.01
575 584 3.710437 TTTCCGACGCGAATAGTTTTC 57.290 42.857 15.93 0.00 0.00 2.29
579 588 2.098607 TCTCATTTCCGACGCGAATAGT 59.901 45.455 15.93 0.00 0.00 2.12
846 859 3.758554 GAGTTGGCCGCCATTGATATATT 59.241 43.478 14.30 0.00 31.53 1.28
849 862 1.143684 AGAGTTGGCCGCCATTGATAT 59.856 47.619 14.30 0.00 31.53 1.63
857 870 2.158943 ACTAAGATAAGAGTTGGCCGCC 60.159 50.000 1.04 1.04 0.00 6.13
858 871 3.180891 ACTAAGATAAGAGTTGGCCGC 57.819 47.619 0.00 0.00 0.00 6.53
859 872 5.258456 TGTACTAAGATAAGAGTTGGCCG 57.742 43.478 0.00 0.00 0.00 6.13
1039 1054 5.006386 ACCAAAATGAACTCCTGCTTCTAG 58.994 41.667 0.00 0.00 0.00 2.43
1168 1184 6.642131 GCTGCATCAAAAACTAAATCACAAGA 59.358 34.615 0.00 0.00 0.00 3.02
1388 1406 2.041620 TCTCTTTTTGGGAGATGGTGGG 59.958 50.000 0.00 0.00 35.25 4.61
1683 1701 8.631695 CAACGATTTCTTATATAGAGAGAACGC 58.368 37.037 0.00 2.28 33.51 4.84
1775 1795 5.047847 ACACACACACACACAACTATCTAC 58.952 41.667 0.00 0.00 0.00 2.59
1798 1818 5.061721 TCTATCTACTATCCCTGCACACA 57.938 43.478 0.00 0.00 0.00 3.72
1800 1820 9.990868 TTTATATCTATCTACTATCCCTGCACA 57.009 33.333 0.00 0.00 0.00 4.57
1854 2194 5.999205 ATTCTGGTTTTTGCATGTGGATA 57.001 34.783 0.00 0.00 0.00 2.59
1857 2197 6.092533 GGAATTATTCTGGTTTTTGCATGTGG 59.907 38.462 4.87 0.00 0.00 4.17
1873 2215 8.421673 AACTTGCTAAGTCGTAGGAATTATTC 57.578 34.615 5.86 0.00 41.91 1.75
1905 2247 7.553334 ACGCTCTTATATTTGTTTACAGAGGA 58.447 34.615 0.00 0.00 0.00 3.71
1915 2257 9.764363 TGATGATCTAAACGCTCTTATATTTGT 57.236 29.630 0.00 0.00 0.00 2.83
1923 2265 9.941664 CATTATTTTGATGATCTAAACGCTCTT 57.058 29.630 4.28 0.00 0.00 2.85
1924 2266 9.113838 ACATTATTTTGATGATCTAAACGCTCT 57.886 29.630 4.28 0.00 0.00 4.09
1925 2267 9.722056 AACATTATTTTGATGATCTAAACGCTC 57.278 29.630 4.28 0.00 0.00 5.03
1926 2268 9.722056 GAACATTATTTTGATGATCTAAACGCT 57.278 29.630 4.28 0.00 0.00 5.07
1927 2269 9.722056 AGAACATTATTTTGATGATCTAAACGC 57.278 29.630 4.28 0.00 35.63 4.84
1933 2275 9.722056 GCGTTTAGAACATTATTTTGATGATCT 57.278 29.630 0.00 0.00 39.20 2.75
1934 2276 9.722056 AGCGTTTAGAACATTATTTTGATGATC 57.278 29.630 0.00 0.00 0.00 2.92
1935 2277 9.722056 GAGCGTTTAGAACATTATTTTGATGAT 57.278 29.630 0.00 0.00 0.00 2.45
1936 2278 8.946085 AGAGCGTTTAGAACATTATTTTGATGA 58.054 29.630 0.00 0.00 0.00 2.92
1937 2279 9.559958 AAGAGCGTTTAGAACATTATTTTGATG 57.440 29.630 0.00 0.00 0.00 3.07
1954 2296 9.099454 CCTCTGTAAAGAAATATAAGAGCGTTT 57.901 33.333 0.00 0.00 0.00 3.60
1955 2297 7.711339 CCCTCTGTAAAGAAATATAAGAGCGTT 59.289 37.037 0.00 0.00 0.00 4.84
1956 2298 7.069578 TCCCTCTGTAAAGAAATATAAGAGCGT 59.930 37.037 0.00 0.00 0.00 5.07
1957 2299 7.434492 TCCCTCTGTAAAGAAATATAAGAGCG 58.566 38.462 0.00 0.00 0.00 5.03
1958 2300 8.425703 ACTCCCTCTGTAAAGAAATATAAGAGC 58.574 37.037 0.00 0.00 0.00 4.09
1966 2308 8.606830 ACTTATGAACTCCCTCTGTAAAGAAAT 58.393 33.333 0.00 0.00 0.00 2.17
1967 2309 7.974504 ACTTATGAACTCCCTCTGTAAAGAAA 58.025 34.615 0.00 0.00 0.00 2.52
1968 2310 7.554959 ACTTATGAACTCCCTCTGTAAAGAA 57.445 36.000 0.00 0.00 0.00 2.52
1969 2311 8.660295 TTACTTATGAACTCCCTCTGTAAAGA 57.340 34.615 0.00 0.00 0.00 2.52
1970 2312 9.892130 AATTACTTATGAACTCCCTCTGTAAAG 57.108 33.333 0.00 0.00 0.00 1.85
1972 2314 9.886132 GAAATTACTTATGAACTCCCTCTGTAA 57.114 33.333 0.00 0.00 0.00 2.41
1973 2315 8.483758 GGAAATTACTTATGAACTCCCTCTGTA 58.516 37.037 0.00 0.00 0.00 2.74
1974 2316 7.037586 TGGAAATTACTTATGAACTCCCTCTGT 60.038 37.037 0.00 0.00 0.00 3.41
1975 2317 7.338710 TGGAAATTACTTATGAACTCCCTCTG 58.661 38.462 0.00 0.00 0.00 3.35
1976 2318 7.510675 TGGAAATTACTTATGAACTCCCTCT 57.489 36.000 0.00 0.00 0.00 3.69
1977 2319 8.575649 TTTGGAAATTACTTATGAACTCCCTC 57.424 34.615 0.00 0.00 0.00 4.30
1978 2320 8.803235 GTTTTGGAAATTACTTATGAACTCCCT 58.197 33.333 0.00 0.00 0.00 4.20
1979 2321 8.033038 GGTTTTGGAAATTACTTATGAACTCCC 58.967 37.037 0.00 0.00 0.00 4.30
1980 2322 8.033038 GGGTTTTGGAAATTACTTATGAACTCC 58.967 37.037 0.00 0.00 0.00 3.85
1981 2323 7.753580 CGGGTTTTGGAAATTACTTATGAACTC 59.246 37.037 0.00 0.00 0.00 3.01
1982 2324 7.231925 ACGGGTTTTGGAAATTACTTATGAACT 59.768 33.333 0.00 0.00 0.00 3.01
1983 2325 7.372714 ACGGGTTTTGGAAATTACTTATGAAC 58.627 34.615 0.00 0.00 0.00 3.18
1984 2326 7.527568 ACGGGTTTTGGAAATTACTTATGAA 57.472 32.000 0.00 0.00 0.00 2.57
1985 2327 7.527568 AACGGGTTTTGGAAATTACTTATGA 57.472 32.000 0.00 0.00 0.00 2.15
1986 2328 9.131416 GTAAACGGGTTTTGGAAATTACTTATG 57.869 33.333 1.70 0.00 34.23 1.90
1987 2329 8.022550 CGTAAACGGGTTTTGGAAATTACTTAT 58.977 33.333 1.70 0.00 34.23 1.73
1988 2330 7.012799 ACGTAAACGGGTTTTGGAAATTACTTA 59.987 33.333 7.50 0.00 44.95 2.24
1998 2340 1.941975 ACTCACGTAAACGGGTTTTGG 59.058 47.619 4.47 0.00 44.39 3.28
2008 2350 4.696877 TCGATCTGGTTCTACTCACGTAAA 59.303 41.667 0.00 0.00 0.00 2.01
2060 2402 7.099120 GCAATGATTTATCCTTTTTGTCCACT 58.901 34.615 0.00 0.00 0.00 4.00
2072 2414 4.101430 ACCCAATGTGGCAATGATTTATCC 59.899 41.667 0.00 0.00 35.79 2.59
2123 2465 7.118496 GGAGAATCTCCTCAGATCAAACTTA 57.882 40.000 21.48 0.00 46.41 2.24
2172 2514 3.002348 GTGTGTTGGTTGTTAGCTCTCAC 59.998 47.826 0.00 0.00 0.00 3.51
2173 2515 3.202906 GTGTGTTGGTTGTTAGCTCTCA 58.797 45.455 0.00 0.00 0.00 3.27
2189 2531 3.076621 CACTTCAGGTGCATATGTGTGT 58.923 45.455 4.29 0.00 39.22 3.72
2211 2553 8.345565 GGTAGGATTAAGATTAAACTGCACATG 58.654 37.037 0.00 0.00 0.00 3.21
2253 2595 8.984891 ATGAATTTGTACATAATGTGTGGTTG 57.015 30.769 0.00 0.00 42.24 3.77
2345 2687 0.666274 TGTGTTCTCAGCGCTAACGG 60.666 55.000 10.99 0.00 40.57 4.44
2400 2742 1.001378 GCGCAAAATGAAGTGTGACCT 60.001 47.619 0.30 0.00 0.00 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.