Multiple sequence alignment - TraesCS6B01G031500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G031500 chr6B 100.000 4904 0 0 1 4904 18649598 18644695 0.000000e+00 9057.0
1 TraesCS6B01G031500 chr6B 80.769 2418 340 66 1546 3918 18658356 18656019 0.000000e+00 1773.0
2 TraesCS6B01G031500 chr6B 81.740 1632 233 45 1005 2617 18593122 18594707 0.000000e+00 1303.0
3 TraesCS6B01G031500 chr6B 87.446 924 112 3 1546 2467 18733864 18732943 0.000000e+00 1061.0
4 TraesCS6B01G031500 chr6B 82.603 730 126 1 3190 3918 18595416 18596145 1.150000e-180 643.0
5 TraesCS6B01G031500 chr6B 82.466 730 127 1 3190 3918 18730788 18730059 5.350000e-179 638.0
6 TraesCS6B01G031500 chr6B 78.553 788 108 38 676 1451 18659174 18658436 3.460000e-126 462.0
7 TraesCS6B01G031500 chr6B 80.392 459 63 21 1005 1451 18734377 18733934 1.700000e-84 324.0
8 TraesCS6B01G031500 chr6D 91.144 1931 145 15 551 2471 10046571 10044657 0.000000e+00 2595.0
9 TraesCS6B01G031500 chr6D 88.513 1567 129 27 2455 3986 10044639 10043089 0.000000e+00 1849.0
10 TraesCS6B01G031500 chr6D 85.524 1126 147 12 1546 2661 10068567 10067448 0.000000e+00 1162.0
11 TraesCS6B01G031500 chr6D 85.786 992 134 5 1546 2535 10121777 10120791 0.000000e+00 1044.0
12 TraesCS6B01G031500 chr6D 88.250 817 47 25 4046 4816 10043085 10042272 0.000000e+00 931.0
13 TraesCS6B01G031500 chr6D 80.219 1097 163 36 2828 3918 10067291 10066243 0.000000e+00 774.0
14 TraesCS6B01G031500 chr6D 81.675 824 136 11 3128 3942 10102079 10101262 0.000000e+00 671.0
15 TraesCS6B01G031500 chr6D 82.300 774 127 6 3147 3913 10119962 10119192 0.000000e+00 662.0
16 TraesCS6B01G031500 chr6D 77.415 797 106 38 676 1455 10069381 10068642 1.640000e-109 407.0
17 TraesCS6B01G031500 chr6D 81.739 460 63 16 1005 1455 10104235 10103788 1.000000e-96 364.0
18 TraesCS6B01G031500 chr6D 79.825 456 73 15 1005 1455 10122337 10121896 1.020000e-81 315.0
19 TraesCS6B01G031500 chr6D 95.455 88 4 0 4815 4902 10042234 10042147 1.840000e-29 141.0
20 TraesCS6B01G031500 chr6D 84.848 132 17 3 485 614 10093413 10093283 3.980000e-26 130.0
21 TraesCS6B01G031500 chr6A 90.190 1998 160 21 542 2518 11558446 11556464 0.000000e+00 2571.0
22 TraesCS6B01G031500 chr6A 87.597 2201 189 44 2521 4656 11556327 11554146 0.000000e+00 2475.0
23 TraesCS6B01G031500 chr6A 81.667 1800 247 49 1005 2789 11590911 11589180 0.000000e+00 1419.0
24 TraesCS6B01G031500 chr6A 85.645 1031 138 7 1546 2570 11571095 11570069 0.000000e+00 1075.0
25 TraesCS6B01G031500 chr6A 82.657 813 130 8 3114 3918 11569593 11568784 0.000000e+00 710.0
26 TraesCS6B01G031500 chr6A 82.787 732 121 4 3190 3918 11588654 11587925 0.000000e+00 649.0
27 TraesCS6B01G031500 chr6A 92.188 256 11 2 4655 4903 11553986 11553733 2.170000e-93 353.0
28 TraesCS6B01G031500 chr6A 84.694 98 12 1 2690 2784 11570000 11569903 1.450000e-15 95.3
29 TraesCS6B01G031500 chr5D 80.000 380 52 14 26 399 486243939 486244300 4.870000e-65 259.0
30 TraesCS6B01G031500 chr5D 81.138 334 44 11 88 417 486244362 486244680 2.930000e-62 250.0
31 TraesCS6B01G031500 chr5B 78.818 406 56 16 26 418 597291570 597291958 3.790000e-61 246.0
32 TraesCS6B01G031500 chr5A 78.920 389 55 17 26 400 652006921 652007296 6.340000e-59 239.0
33 TraesCS6B01G031500 chr1B 77.240 413 66 15 24 419 637373046 637372645 2.970000e-52 217.0
34 TraesCS6B01G031500 chr1D 77.150 407 70 17 27 417 7506742 7506343 1.070000e-51 215.0
35 TraesCS6B01G031500 chr1A 80.870 230 39 4 101 328 65360944 65361170 5.040000e-40 176.0
36 TraesCS6B01G031500 chr1A 81.279 219 29 4 113 324 552272607 552272394 3.040000e-37 167.0
37 TraesCS6B01G031500 chr1A 75.542 323 57 13 101 420 65322323 65322626 6.620000e-29 139.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G031500 chr6B 18644695 18649598 4903 True 9057.000000 9057 100.000000 1 4904 1 chr6B.!!$R1 4903
1 TraesCS6B01G031500 chr6B 18656019 18659174 3155 True 1117.500000 1773 79.661000 676 3918 2 chr6B.!!$R2 3242
2 TraesCS6B01G031500 chr6B 18593122 18596145 3023 False 973.000000 1303 82.171500 1005 3918 2 chr6B.!!$F1 2913
3 TraesCS6B01G031500 chr6B 18730059 18734377 4318 True 674.333333 1061 83.434667 1005 3918 3 chr6B.!!$R3 2913
4 TraesCS6B01G031500 chr6D 10042147 10046571 4424 True 1379.000000 2595 90.840500 551 4902 4 chr6D.!!$R2 4351
5 TraesCS6B01G031500 chr6D 10066243 10069381 3138 True 781.000000 1162 81.052667 676 3918 3 chr6D.!!$R3 3242
6 TraesCS6B01G031500 chr6D 10119192 10122337 3145 True 673.666667 1044 82.637000 1005 3913 3 chr6D.!!$R5 2908
7 TraesCS6B01G031500 chr6D 10101262 10104235 2973 True 517.500000 671 81.707000 1005 3942 2 chr6D.!!$R4 2937
8 TraesCS6B01G031500 chr6A 11553733 11558446 4713 True 1799.666667 2571 89.991667 542 4903 3 chr6A.!!$R1 4361
9 TraesCS6B01G031500 chr6A 11587925 11590911 2986 True 1034.000000 1419 82.227000 1005 3918 2 chr6A.!!$R3 2913
10 TraesCS6B01G031500 chr6A 11568784 11571095 2311 True 626.766667 1075 84.332000 1546 3918 3 chr6A.!!$R2 2372
11 TraesCS6B01G031500 chr5D 486243939 486244680 741 False 254.500000 259 80.569000 26 417 2 chr5D.!!$F1 391

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
515 882 0.236449 GTTTAAACTGACGTGGCCGG 59.764 55.0 11.18 0.0 38.78 6.13 F
536 903 0.678950 CGGCCAATCCAACAGGTTTT 59.321 50.0 2.24 0.0 34.01 2.43 F
2053 2578 0.738975 TCGACTATGAGCTTGTCCCG 59.261 55.0 0.00 0.0 0.00 5.14 F
2605 3310 0.108992 TTCCATAGACACGTCGGCAC 60.109 55.0 0.00 0.0 34.09 5.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1952 2477 0.895100 ACAAGCCGCCATGTGTCATT 60.895 50.0 0.00 0.00 0.00 2.57 R
2125 2650 1.065572 CGTCCGTCATATCGATGCCG 61.066 60.0 8.54 4.63 34.25 5.69 R
2935 5786 0.036732 CTTTGCCTGCCACTAGACCA 59.963 55.0 0.00 0.00 0.00 4.02 R
4334 7597 0.251916 CCGCCTGGTCCATCTTTACA 59.748 55.0 0.00 0.00 0.00 2.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 1.901591 ACTTTGCAGATGGACCACAG 58.098 50.000 0.00 0.00 0.00 3.66
20 21 1.421268 ACTTTGCAGATGGACCACAGA 59.579 47.619 0.00 0.00 0.00 3.41
21 22 2.040813 ACTTTGCAGATGGACCACAGAT 59.959 45.455 0.00 0.00 0.00 2.90
22 23 2.118313 TTGCAGATGGACCACAGATG 57.882 50.000 0.00 0.00 0.00 2.90
23 24 0.393402 TGCAGATGGACCACAGATGC 60.393 55.000 12.73 12.73 42.03 3.91
24 25 0.393402 GCAGATGGACCACAGATGCA 60.393 55.000 14.10 0.00 41.58 3.96
30 31 2.665165 TGGACCACAGATGCAAAAGTT 58.335 42.857 0.00 0.00 0.00 2.66
36 37 6.294731 GGACCACAGATGCAAAAGTTCTATTT 60.295 38.462 0.00 0.00 0.00 1.40
55 56 0.599558 TTGCACCTGAGCTCAAATGC 59.400 50.000 31.22 31.22 37.33 3.56
75 77 9.590451 CAAATGCTCCATATGAACAGTAAAATT 57.410 29.630 3.65 0.00 0.00 1.82
76 78 9.807649 AAATGCTCCATATGAACAGTAAAATTC 57.192 29.630 3.65 0.00 0.00 2.17
130 135 7.762159 GTGTGGGAAACTTTGAGAAATGTTTTA 59.238 33.333 4.58 0.00 33.49 1.52
165 170 3.694043 TTCACCTCGAAATGACATCCA 57.306 42.857 0.00 0.00 0.00 3.41
166 171 3.694043 TCACCTCGAAATGACATCCAA 57.306 42.857 0.00 0.00 0.00 3.53
168 173 3.007940 TCACCTCGAAATGACATCCAAGT 59.992 43.478 0.00 0.00 0.00 3.16
174 179 3.689161 CGAAATGACATCCAAGTAAGGCA 59.311 43.478 0.00 0.00 0.00 4.75
182 187 1.892474 TCCAAGTAAGGCATGGCAAAC 59.108 47.619 22.64 17.70 36.00 2.93
183 188 1.402720 CCAAGTAAGGCATGGCAAACG 60.403 52.381 22.64 6.93 0.00 3.60
187 192 2.625790 AGTAAGGCATGGCAAACGAAAA 59.374 40.909 22.64 0.00 0.00 2.29
190 195 3.124578 AGGCATGGCAAACGAAAAATT 57.875 38.095 22.64 0.00 0.00 1.82
198 203 3.673338 GGCAAACGAAAAATTAGCACTCC 59.327 43.478 0.00 0.00 0.00 3.85
203 208 7.282916 CAAACGAAAAATTAGCACTCCAAATG 58.717 34.615 0.00 0.00 0.00 2.32
239 244 9.545611 CTAGCATTTTTGGAACATTAATTTTGC 57.454 29.630 0.00 0.00 39.30 3.68
240 245 8.168790 AGCATTTTTGGAACATTAATTTTGCT 57.831 26.923 7.28 0.00 39.30 3.91
241 246 8.631797 AGCATTTTTGGAACATTAATTTTGCTT 58.368 25.926 7.28 0.00 39.30 3.91
242 247 9.890352 GCATTTTTGGAACATTAATTTTGCTTA 57.110 25.926 7.28 0.00 39.30 3.09
268 273 3.342377 TTGCCACGACTTCCATGAATA 57.658 42.857 0.00 0.00 0.00 1.75
270 275 3.466836 TGCCACGACTTCCATGAATATC 58.533 45.455 0.00 0.00 0.00 1.63
275 280 6.460123 GCCACGACTTCCATGAATATCATTTT 60.460 38.462 0.00 0.00 34.28 1.82
279 284 7.336679 ACGACTTCCATGAATATCATTTTGTGA 59.663 33.333 0.00 0.00 42.06 3.58
388 755 5.968676 ATTACTGTTTACCAGGGAGCATA 57.031 39.130 0.00 0.00 46.06 3.14
417 784 2.156343 GAGCGAATACTCCATGTCCC 57.844 55.000 0.00 0.00 0.00 4.46
418 785 1.689273 GAGCGAATACTCCATGTCCCT 59.311 52.381 0.00 0.00 0.00 4.20
419 786 2.891580 GAGCGAATACTCCATGTCCCTA 59.108 50.000 0.00 0.00 0.00 3.53
420 787 2.894126 AGCGAATACTCCATGTCCCTAG 59.106 50.000 0.00 0.00 0.00 3.02
421 788 2.891580 GCGAATACTCCATGTCCCTAGA 59.108 50.000 0.00 0.00 0.00 2.43
422 789 3.057174 GCGAATACTCCATGTCCCTAGAG 60.057 52.174 0.00 0.00 0.00 2.43
423 790 4.399219 CGAATACTCCATGTCCCTAGAGA 58.601 47.826 0.00 0.00 0.00 3.10
424 791 5.013547 CGAATACTCCATGTCCCTAGAGAT 58.986 45.833 0.00 0.00 0.00 2.75
425 792 5.105957 CGAATACTCCATGTCCCTAGAGATG 60.106 48.000 0.00 0.00 42.15 2.90
426 793 2.324541 ACTCCATGTCCCTAGAGATGC 58.675 52.381 0.00 0.00 41.37 3.91
427 794 2.090831 ACTCCATGTCCCTAGAGATGCT 60.091 50.000 0.00 0.00 41.37 3.79
428 795 2.562298 CTCCATGTCCCTAGAGATGCTC 59.438 54.545 0.00 0.00 41.37 4.26
429 796 2.178764 TCCATGTCCCTAGAGATGCTCT 59.821 50.000 2.22 2.22 41.37 4.09
430 797 3.399305 TCCATGTCCCTAGAGATGCTCTA 59.601 47.826 4.30 4.30 41.37 2.43
448 815 2.620251 TAGCAATGCTAGCGAACCAT 57.380 45.000 11.40 0.00 40.44 3.55
449 816 2.620251 AGCAATGCTAGCGAACCATA 57.380 45.000 5.69 0.00 36.99 2.74
450 817 3.131709 AGCAATGCTAGCGAACCATAT 57.868 42.857 5.69 0.00 36.99 1.78
451 818 3.480470 AGCAATGCTAGCGAACCATATT 58.520 40.909 5.69 0.00 36.99 1.28
452 819 4.641396 AGCAATGCTAGCGAACCATATTA 58.359 39.130 5.69 0.00 36.99 0.98
453 820 5.063204 AGCAATGCTAGCGAACCATATTAA 58.937 37.500 5.69 0.00 36.99 1.40
454 821 5.180117 AGCAATGCTAGCGAACCATATTAAG 59.820 40.000 5.69 0.00 36.99 1.85
455 822 5.179368 GCAATGCTAGCGAACCATATTAAGA 59.821 40.000 10.77 0.00 0.00 2.10
456 823 6.293407 GCAATGCTAGCGAACCATATTAAGAA 60.293 38.462 10.77 0.00 0.00 2.52
457 824 7.639039 CAATGCTAGCGAACCATATTAAGAAA 58.361 34.615 10.77 0.00 0.00 2.52
458 825 7.801716 ATGCTAGCGAACCATATTAAGAAAA 57.198 32.000 10.77 0.00 0.00 2.29
459 826 7.618502 TGCTAGCGAACCATATTAAGAAAAA 57.381 32.000 10.77 0.00 0.00 1.94
460 827 8.220755 TGCTAGCGAACCATATTAAGAAAAAT 57.779 30.769 10.77 0.00 0.00 1.82
461 828 8.342634 TGCTAGCGAACCATATTAAGAAAAATC 58.657 33.333 10.77 0.00 0.00 2.17
462 829 8.342634 GCTAGCGAACCATATTAAGAAAAATCA 58.657 33.333 0.00 0.00 0.00 2.57
490 857 8.522542 ACTACTCCTACTAGTTAACATGAAGG 57.477 38.462 8.61 9.20 0.00 3.46
491 858 6.793505 ACTCCTACTAGTTAACATGAAGGG 57.206 41.667 8.61 3.15 0.00 3.95
492 859 6.500336 ACTCCTACTAGTTAACATGAAGGGA 58.500 40.000 8.61 7.12 0.00 4.20
493 860 6.958192 ACTCCTACTAGTTAACATGAAGGGAA 59.042 38.462 8.61 0.00 0.00 3.97
494 861 7.124448 ACTCCTACTAGTTAACATGAAGGGAAG 59.876 40.741 8.61 6.37 0.00 3.46
495 862 7.186972 TCCTACTAGTTAACATGAAGGGAAGA 58.813 38.462 8.61 0.00 0.00 2.87
496 863 7.342284 TCCTACTAGTTAACATGAAGGGAAGAG 59.658 40.741 8.61 0.00 0.00 2.85
497 864 6.936968 ACTAGTTAACATGAAGGGAAGAGT 57.063 37.500 8.61 0.00 0.00 3.24
498 865 7.317722 ACTAGTTAACATGAAGGGAAGAGTT 57.682 36.000 8.61 0.00 0.00 3.01
499 866 7.746703 ACTAGTTAACATGAAGGGAAGAGTTT 58.253 34.615 8.61 0.00 0.00 2.66
500 867 8.877195 ACTAGTTAACATGAAGGGAAGAGTTTA 58.123 33.333 8.61 0.00 0.00 2.01
501 868 9.720769 CTAGTTAACATGAAGGGAAGAGTTTAA 57.279 33.333 8.61 0.00 0.00 1.52
502 869 8.990163 AGTTAACATGAAGGGAAGAGTTTAAA 57.010 30.769 8.61 0.00 0.00 1.52
503 870 8.847196 AGTTAACATGAAGGGAAGAGTTTAAAC 58.153 33.333 10.47 10.47 0.00 2.01
504 871 8.847196 GTTAACATGAAGGGAAGAGTTTAAACT 58.153 33.333 20.67 20.67 43.16 2.66
505 872 6.884280 ACATGAAGGGAAGAGTTTAAACTG 57.116 37.500 25.17 9.51 39.88 3.16
506 873 6.601332 ACATGAAGGGAAGAGTTTAAACTGA 58.399 36.000 25.17 0.00 39.88 3.41
507 874 6.486993 ACATGAAGGGAAGAGTTTAAACTGAC 59.513 38.462 25.17 11.82 39.88 3.51
508 875 5.054477 TGAAGGGAAGAGTTTAAACTGACG 58.946 41.667 25.17 0.00 39.88 4.35
509 876 4.684484 AGGGAAGAGTTTAAACTGACGT 57.316 40.909 25.17 10.08 39.88 4.34
510 877 4.377897 AGGGAAGAGTTTAAACTGACGTG 58.622 43.478 25.17 0.00 39.88 4.49
511 878 3.497262 GGGAAGAGTTTAAACTGACGTGG 59.503 47.826 25.17 0.00 39.88 4.94
512 879 3.059120 GGAAGAGTTTAAACTGACGTGGC 60.059 47.826 25.17 8.99 39.88 5.01
513 880 2.490991 AGAGTTTAAACTGACGTGGCC 58.509 47.619 25.17 8.28 39.88 5.36
514 881 1.193874 GAGTTTAAACTGACGTGGCCG 59.806 52.381 25.17 0.00 39.88 6.13
515 882 0.236449 GTTTAAACTGACGTGGCCGG 59.764 55.000 11.18 0.00 38.78 6.13
516 883 1.508808 TTTAAACTGACGTGGCCGGC 61.509 55.000 21.18 21.18 44.55 6.13
517 884 3.887335 TAAACTGACGTGGCCGGCC 62.887 63.158 39.40 39.40 43.26 6.13
531 898 3.451894 GGCCGGCCAATCCAACAG 61.452 66.667 40.73 0.00 35.81 3.16
532 899 3.451894 GCCGGCCAATCCAACAGG 61.452 66.667 18.11 0.00 34.01 4.00
533 900 2.035626 CCGGCCAATCCAACAGGT 59.964 61.111 2.24 0.00 34.01 4.00
534 901 1.606313 CCGGCCAATCCAACAGGTT 60.606 57.895 2.24 0.00 34.01 3.50
535 902 1.184970 CCGGCCAATCCAACAGGTTT 61.185 55.000 2.24 0.00 34.01 3.27
536 903 0.678950 CGGCCAATCCAACAGGTTTT 59.321 50.000 2.24 0.00 34.01 2.43
537 904 1.889829 CGGCCAATCCAACAGGTTTTA 59.110 47.619 2.24 0.00 34.01 1.52
538 905 2.495669 CGGCCAATCCAACAGGTTTTAT 59.504 45.455 2.24 0.00 34.01 1.40
539 906 3.697045 CGGCCAATCCAACAGGTTTTATA 59.303 43.478 2.24 0.00 34.01 0.98
540 907 4.340950 CGGCCAATCCAACAGGTTTTATAT 59.659 41.667 2.24 0.00 34.01 0.86
553 920 7.168219 ACAGGTTTTATATTCACAGAGCAAGA 58.832 34.615 0.00 0.00 0.00 3.02
576 943 6.147328 AGAGTGTCTTTCGCTAATTAACAACC 59.853 38.462 0.00 0.00 36.99 3.77
577 944 5.077424 GTGTCTTTCGCTAATTAACAACCG 58.923 41.667 0.00 0.00 0.00 4.44
581 948 2.620242 TCGCTAATTAACAACCGACCC 58.380 47.619 0.00 0.00 0.00 4.46
594 964 4.199310 CAACCGACCCAACTCAATCATAT 58.801 43.478 0.00 0.00 0.00 1.78
744 1121 4.710313 TGGATGGATGATGATTAGCACA 57.290 40.909 0.00 0.00 0.00 4.57
748 1125 3.721035 TGGATGATGATTAGCACAGACG 58.279 45.455 0.00 0.00 0.00 4.18
845 1222 1.164041 ACTATAAATGGCACCCGCGC 61.164 55.000 0.00 0.00 39.92 6.86
846 1223 2.170260 CTATAAATGGCACCCGCGCG 62.170 60.000 25.67 25.67 39.92 6.86
898 1279 3.430218 CACACATTCTCCTCGTTCTTGTC 59.570 47.826 0.00 0.00 0.00 3.18
922 1309 6.599244 TCAAGTTTAGCAGAGGTGATAATTGG 59.401 38.462 0.00 0.00 34.57 3.16
934 1321 2.241176 TGATAATTGGTCAGTCCCACCC 59.759 50.000 0.00 0.00 33.14 4.61
977 1364 2.653702 CGGAGATCGAGGCATCCC 59.346 66.667 0.00 0.00 42.43 3.85
993 1380 2.115911 CCCTCGTCTCCTCCGTCTG 61.116 68.421 0.00 0.00 0.00 3.51
1146 1554 3.512516 GCCGCAATGCTCCTGACC 61.513 66.667 2.94 0.00 0.00 4.02
1262 1673 2.041366 GAGGTCGACGCGGTACCTAC 62.041 65.000 23.69 15.53 43.69 3.18
1398 1818 3.709633 ATGCTCCAGTGGCAGCGA 61.710 61.111 21.26 14.18 43.15 4.93
1410 1830 2.436646 CAGCGAACCGGCTTCCAT 60.437 61.111 0.00 0.00 42.53 3.41
1464 1924 5.394115 CCCCAATGGTAAATACTTGTTGCTC 60.394 44.000 0.00 0.00 0.00 4.26
1469 1929 9.507280 CAATGGTAAATACTTGTTGCTCTAATG 57.493 33.333 0.00 0.00 0.00 1.90
1478 2003 7.568199 ACTTGTTGCTCTAATGTTGTTAGTT 57.432 32.000 0.00 0.00 0.00 2.24
1479 2004 7.417612 ACTTGTTGCTCTAATGTTGTTAGTTG 58.582 34.615 0.00 0.00 0.00 3.16
1481 2006 7.744087 TGTTGCTCTAATGTTGTTAGTTGAT 57.256 32.000 0.00 0.00 0.00 2.57
1483 2008 8.935844 TGTTGCTCTAATGTTGTTAGTTGATAG 58.064 33.333 0.00 0.00 0.00 2.08
1484 2009 9.151471 GTTGCTCTAATGTTGTTAGTTGATAGA 57.849 33.333 0.00 0.00 0.00 1.98
1486 2011 8.749354 TGCTCTAATGTTGTTAGTTGATAGAGA 58.251 33.333 9.90 0.00 38.11 3.10
1487 2012 9.757227 GCTCTAATGTTGTTAGTTGATAGAGAT 57.243 33.333 9.90 0.00 38.11 2.75
1493 2018 8.718102 TGTTGTTAGTTGATAGAGATAAAGCC 57.282 34.615 0.00 0.00 0.00 4.35
1494 2019 8.318412 TGTTGTTAGTTGATAGAGATAAAGCCA 58.682 33.333 0.00 0.00 0.00 4.75
1495 2020 8.821894 GTTGTTAGTTGATAGAGATAAAGCCAG 58.178 37.037 0.00 0.00 0.00 4.85
1496 2021 7.500992 TGTTAGTTGATAGAGATAAAGCCAGG 58.499 38.462 0.00 0.00 0.00 4.45
1497 2022 7.344612 TGTTAGTTGATAGAGATAAAGCCAGGA 59.655 37.037 0.00 0.00 0.00 3.86
1498 2023 8.371699 GTTAGTTGATAGAGATAAAGCCAGGAT 58.628 37.037 0.00 0.00 0.00 3.24
1499 2024 6.767456 AGTTGATAGAGATAAAGCCAGGATG 58.233 40.000 0.00 0.00 0.00 3.51
1500 2025 6.328672 AGTTGATAGAGATAAAGCCAGGATGT 59.671 38.462 0.00 0.00 0.00 3.06
1501 2026 7.510685 AGTTGATAGAGATAAAGCCAGGATGTA 59.489 37.037 0.00 0.00 0.00 2.29
1502 2027 7.233389 TGATAGAGATAAAGCCAGGATGTAC 57.767 40.000 0.00 0.00 0.00 2.90
1503 2028 7.013220 TGATAGAGATAAAGCCAGGATGTACT 58.987 38.462 0.00 0.00 0.00 2.73
1504 2029 5.799827 AGAGATAAAGCCAGGATGTACTC 57.200 43.478 0.00 0.00 0.00 2.59
1505 2030 5.463154 AGAGATAAAGCCAGGATGTACTCT 58.537 41.667 0.00 0.00 0.00 3.24
1506 2031 5.304101 AGAGATAAAGCCAGGATGTACTCTG 59.696 44.000 6.33 0.00 31.31 3.35
1507 2032 5.211973 AGATAAAGCCAGGATGTACTCTGA 58.788 41.667 11.23 0.00 33.11 3.27
1508 2033 5.663106 AGATAAAGCCAGGATGTACTCTGAA 59.337 40.000 11.23 0.00 33.11 3.02
1509 2034 4.851639 AAAGCCAGGATGTACTCTGAAT 57.148 40.909 11.23 0.00 33.11 2.57
1510 2035 5.957771 AAAGCCAGGATGTACTCTGAATA 57.042 39.130 11.23 0.00 33.11 1.75
1511 2036 5.957771 AAGCCAGGATGTACTCTGAATAA 57.042 39.130 11.23 0.00 33.11 1.40
1512 2037 6.506538 AAGCCAGGATGTACTCTGAATAAT 57.493 37.500 11.23 0.00 33.11 1.28
1513 2038 6.506538 AGCCAGGATGTACTCTGAATAATT 57.493 37.500 11.23 0.00 33.11 1.40
1514 2039 6.529220 AGCCAGGATGTACTCTGAATAATTC 58.471 40.000 11.23 0.00 33.11 2.17
1515 2040 6.100279 AGCCAGGATGTACTCTGAATAATTCA 59.900 38.462 11.23 0.00 38.17 2.57
1536 2061 9.739276 AATTCAGTTACAGGATTCTCATACAAA 57.261 29.630 0.00 0.00 0.00 2.83
1537 2062 9.911788 ATTCAGTTACAGGATTCTCATACAAAT 57.088 29.630 0.00 0.00 0.00 2.32
1538 2063 8.948631 TCAGTTACAGGATTCTCATACAAATC 57.051 34.615 0.00 0.00 0.00 2.17
1539 2064 8.539544 TCAGTTACAGGATTCTCATACAAATCA 58.460 33.333 0.00 0.00 34.28 2.57
1540 2065 9.334947 CAGTTACAGGATTCTCATACAAATCAT 57.665 33.333 0.00 0.00 34.28 2.45
1624 2149 3.059386 GACGGCGCAATTTGGGGA 61.059 61.111 10.83 0.00 0.00 4.81
1630 2155 1.587547 GCGCAATTTGGGGAAACAAA 58.412 45.000 14.44 0.00 43.69 2.83
1669 2194 2.599281 TCCCGTGACTTGCTCCGA 60.599 61.111 0.00 0.00 0.00 4.55
1753 2278 4.631740 TCTGCCACCGTCCTCCCA 62.632 66.667 0.00 0.00 0.00 4.37
1851 2376 1.969208 CCCCTCCGATCCCTTACTAAC 59.031 57.143 0.00 0.00 0.00 2.34
1952 2477 2.027897 CGTGGTTCGACGGTTCCA 59.972 61.111 0.00 0.00 42.86 3.53
1969 2494 1.597797 CCAATGACACATGGCGGCTT 61.598 55.000 11.43 0.00 0.00 4.35
2053 2578 0.738975 TCGACTATGAGCTTGTCCCG 59.261 55.000 0.00 0.00 0.00 5.14
2216 2741 1.035923 GGAGAGCTCGGATGATGACA 58.964 55.000 8.37 0.00 0.00 3.58
2263 2788 1.509787 CGACGCGGCAAAGAACATG 60.510 57.895 14.85 0.00 0.00 3.21
2335 2860 1.906574 TGGGGAAAGTTCTATGCGTCT 59.093 47.619 0.00 0.00 0.00 4.18
2478 3040 2.358898 ACATCTTCTTGTTGCGCAAAGT 59.641 40.909 26.87 9.19 36.53 2.66
2480 3042 4.036262 ACATCTTCTTGTTGCGCAAAGTTA 59.964 37.500 26.87 8.45 36.53 2.24
2605 3310 0.108992 TTCCATAGACACGTCGGCAC 60.109 55.000 0.00 0.00 34.09 5.01
2662 3778 5.375773 TGCAAATGATAATAGCAGCCACTA 58.624 37.500 0.00 0.00 0.00 2.74
2663 3779 5.827267 TGCAAATGATAATAGCAGCCACTAA 59.173 36.000 0.00 0.00 0.00 2.24
2766 5273 1.400846 CCTTGAGCTTGCATACAGCTG 59.599 52.381 15.93 13.48 45.94 4.24
2848 5455 9.737427 TTGATAACAATTTCTTTTAGCACGAAA 57.263 25.926 0.00 0.00 0.00 3.46
2856 5463 5.164606 TCTTTTAGCACGAAACCAAACTC 57.835 39.130 0.00 0.00 0.00 3.01
2859 5466 1.164041 AGCACGAAACCAAACTCGGG 61.164 55.000 0.00 0.00 41.45 5.14
2877 5494 2.953648 CGGGTTACACAAGAAAAGGGTT 59.046 45.455 0.00 0.00 0.00 4.11
2882 5499 3.775661 ACACAAGAAAAGGGTTTGTCG 57.224 42.857 0.00 0.00 33.06 4.35
2906 5757 3.957497 ACAAACAAACTCTGCATACCCAA 59.043 39.130 0.00 0.00 0.00 4.12
2907 5758 4.202111 ACAAACAAACTCTGCATACCCAAC 60.202 41.667 0.00 0.00 0.00 3.77
2928 5779 3.117926 ACAGGCAATCATGTGGTAGCATA 60.118 43.478 0.00 0.00 0.00 3.14
2931 5782 3.366679 GGCAATCATGTGGTAGCATATGC 60.367 47.826 22.49 20.36 42.49 3.14
2932 5783 3.253921 GCAATCATGTGGTAGCATATGCA 59.746 43.478 28.62 12.53 45.16 3.96
2933 5784 4.082408 GCAATCATGTGGTAGCATATGCAT 60.082 41.667 28.62 16.04 45.16 3.96
2934 5785 5.399013 CAATCATGTGGTAGCATATGCATG 58.601 41.667 28.62 20.60 45.16 4.06
2935 5786 4.089408 TCATGTGGTAGCATATGCATGT 57.911 40.909 28.62 11.60 45.16 3.21
2936 5787 3.816523 TCATGTGGTAGCATATGCATGTG 59.183 43.478 28.62 18.29 45.16 3.21
2969 5820 1.603326 GCAAAGGTTGGCAATTTGGTG 59.397 47.619 21.43 10.86 35.07 4.17
3017 5868 8.823220 AATAATTTCTGCTAGTACCAACCAAT 57.177 30.769 0.00 0.00 0.00 3.16
3062 6224 1.771854 TGTCTTGTCTGCTTACCCCAA 59.228 47.619 0.00 0.00 0.00 4.12
3083 6245 6.314784 CCAAGGTTAGTTAGCAATTCTTTCG 58.685 40.000 0.00 0.00 0.00 3.46
3104 6266 2.474816 GCTCAGACGGTGAATGATACC 58.525 52.381 0.00 0.00 33.60 2.73
3107 6269 4.202121 GCTCAGACGGTGAATGATACCTAA 60.202 45.833 0.00 0.00 36.03 2.69
3108 6270 5.681437 GCTCAGACGGTGAATGATACCTAAA 60.681 44.000 0.00 0.00 36.03 1.85
3109 6271 6.479972 TCAGACGGTGAATGATACCTAAAT 57.520 37.500 0.00 0.00 36.03 1.40
3111 6273 6.984474 TCAGACGGTGAATGATACCTAAATTC 59.016 38.462 0.00 0.00 36.03 2.17
3141 6305 9.681692 TTTCTTTGTTGTCAATGATTGATACTG 57.318 29.630 11.46 7.75 42.47 2.74
3159 6339 2.307098 ACTGCCTAGGATTCTTTGCTGT 59.693 45.455 14.75 1.43 0.00 4.40
3264 6462 3.177884 AACCTCCTGCAGTGGCCA 61.178 61.111 19.19 0.00 40.13 5.36
3274 6472 3.325753 AGTGGCCAGTGGAGGAGC 61.326 66.667 13.75 0.00 0.00 4.70
3306 6504 1.061546 GGACCAACTCCACCAACCTA 58.938 55.000 0.00 0.00 39.21 3.08
3307 6505 1.271217 GGACCAACTCCACCAACCTAC 60.271 57.143 0.00 0.00 39.21 3.18
3308 6506 1.418637 GACCAACTCCACCAACCTACA 59.581 52.381 0.00 0.00 0.00 2.74
3309 6507 1.420138 ACCAACTCCACCAACCTACAG 59.580 52.381 0.00 0.00 0.00 2.74
3313 6511 1.462432 TCCACCAACCTACAGGGCA 60.462 57.895 0.00 0.00 40.27 5.36
3351 6549 2.185608 GTCTTCCCGCTCAGCCTC 59.814 66.667 0.00 0.00 0.00 4.70
3363 6561 4.087892 AGCCTCCATCGCGCAACT 62.088 61.111 8.75 0.00 0.00 3.16
3369 6567 0.602638 TCCATCGCGCAACTCAACTT 60.603 50.000 8.75 0.00 0.00 2.66
3400 6598 2.202878 CATTCCGCATCGACCCGT 60.203 61.111 5.91 0.00 0.00 5.28
3414 6612 2.202690 CCGTTAGATGTCGCCGCA 60.203 61.111 0.00 0.00 0.00 5.69
3498 6696 3.787001 GGACCCTTCGGCCTCCTG 61.787 72.222 0.00 0.00 0.00 3.86
3561 6759 4.370917 GGACCGCCGTCTATTTTTATGTA 58.629 43.478 5.18 0.00 39.15 2.29
3573 6771 1.209621 TTTATGTAGCGAGGGGCCTT 58.790 50.000 0.84 0.00 45.17 4.35
3618 6816 1.067084 CCATGACGAGATGCGCTCT 59.933 57.895 9.73 9.17 46.04 4.09
3676 6874 2.591429 CTGTGCCGGTGCTCAACA 60.591 61.111 1.90 0.00 40.20 3.33
3697 6895 0.609406 CGAGGACCTGTCAGTGAGGA 60.609 60.000 0.00 0.00 34.37 3.71
3732 6930 3.181456 ACTCCATCATAGAGAGCTTTGCC 60.181 47.826 0.00 0.00 35.27 4.52
3825 7023 2.902846 TTCAACAACGCCACCGGG 60.903 61.111 6.32 0.00 39.22 5.73
3850 7048 3.555324 TCACCGCAACCAGCCTCA 61.555 61.111 0.00 0.00 41.38 3.86
3986 7196 4.601857 TCACTCCCCCTATCTTCTGTTTTT 59.398 41.667 0.00 0.00 0.00 1.94
4034 7244 2.912956 TCATTGTCTAGGCCTTCCAGTT 59.087 45.455 12.58 0.00 33.74 3.16
4044 7254 3.261137 AGGCCTTCCAGTTAGTTGTAGTC 59.739 47.826 0.00 0.00 33.74 2.59
4049 7259 2.490903 TCCAGTTAGTTGTAGTCGAGCC 59.509 50.000 0.00 0.00 0.00 4.70
4153 7364 3.634448 TGGTCTTTGAAAATTTCGGCTGA 59.366 39.130 0.97 0.00 0.00 4.26
4162 7373 3.575965 AATTTCGGCTGATTGGTTCAC 57.424 42.857 0.00 0.00 0.00 3.18
4199 7410 5.007136 GCTATCTACAATTGCAGAAGGACAC 59.993 44.000 12.35 0.00 0.00 3.67
4242 7453 9.801714 CAAGCATGAAACTGAATTTAAATCAAC 57.198 29.630 0.10 0.00 0.00 3.18
4250 7485 8.807667 AACTGAATTTAAATCAACTGCTGAAG 57.192 30.769 0.10 0.00 37.67 3.02
4261 7496 3.004752 ACTGCTGAAGTTGAAAGTGGT 57.995 42.857 0.00 0.00 34.57 4.16
4275 7510 5.708948 TGAAAGTGGTTGTTGAGTTTGAAG 58.291 37.500 0.00 0.00 0.00 3.02
4302 7537 3.952323 CCCCTCATTTACTCGACTCTGTA 59.048 47.826 0.00 0.00 0.00 2.74
4308 7545 7.273815 CCTCATTTACTCGACTCTGTAGTTTTC 59.726 40.741 0.00 0.00 35.56 2.29
4324 7561 9.930693 CTGTAGTTTTCTCCTAAGACTAATTGT 57.069 33.333 0.00 0.00 0.00 2.71
4370 7633 1.148157 CGGTCGATGTGGATGCAGTC 61.148 60.000 0.00 0.00 0.00 3.51
4373 7636 2.224042 GGTCGATGTGGATGCAGTCATA 60.224 50.000 0.00 0.00 31.96 2.15
4374 7637 3.555795 GGTCGATGTGGATGCAGTCATAT 60.556 47.826 0.00 0.00 31.96 1.78
4375 7638 4.321974 GGTCGATGTGGATGCAGTCATATA 60.322 45.833 0.00 0.00 31.96 0.86
4382 7645 5.243954 TGTGGATGCAGTCATATACTAGGTC 59.756 44.000 0.00 0.00 35.76 3.85
4422 7685 2.341101 CCCGTCGGTACTGCTCAGT 61.341 63.158 11.06 7.73 45.02 3.41
4456 7719 5.419542 TGCACCATAGTTTATCACTGAGAC 58.580 41.667 0.00 0.00 35.97 3.36
4457 7720 4.504461 GCACCATAGTTTATCACTGAGACG 59.496 45.833 0.00 0.00 35.97 4.18
4505 7768 0.595567 TGCGTACTTCACACCGTGTC 60.596 55.000 0.00 0.00 34.79 3.67
4524 7787 5.175856 CGTGTCTCTGTTCCAAGTAAGAAAG 59.824 44.000 0.00 0.00 0.00 2.62
4558 7822 9.368674 CAGAACAAGGATCAGTCATGATATATC 57.631 37.037 5.73 5.73 46.39 1.63
4713 8139 3.056821 GGTTTAGTTGCTTTGATGTCCCC 60.057 47.826 0.00 0.00 0.00 4.81
4755 8181 7.171678 CCTTAGACAACCTGAAGAGTAAAACAG 59.828 40.741 0.00 0.00 0.00 3.16
4760 8186 6.884836 ACAACCTGAAGAGTAAAACAGAAACT 59.115 34.615 0.00 0.00 32.90 2.66
4794 8220 5.865085 AGTAAAAGCCACTCATGTAGAACA 58.135 37.500 0.00 0.00 0.00 3.18
4903 8368 5.670792 ATCACTCTTAACCATACCGACAA 57.329 39.130 0.00 0.00 0.00 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.421268 TCTGTGGTCCATCTGCAAAGT 59.579 47.619 0.00 0.00 0.00 2.66
1 2 2.189594 TCTGTGGTCCATCTGCAAAG 57.810 50.000 0.00 0.00 0.00 2.77
2 3 2.439409 CATCTGTGGTCCATCTGCAAA 58.561 47.619 0.00 0.00 0.00 3.68
3 4 1.951895 GCATCTGTGGTCCATCTGCAA 60.952 52.381 0.00 0.00 33.07 4.08
4 5 0.393402 GCATCTGTGGTCCATCTGCA 60.393 55.000 0.00 0.00 33.07 4.41
5 6 0.393402 TGCATCTGTGGTCCATCTGC 60.393 55.000 0.00 3.03 33.31 4.26
6 7 2.118313 TTGCATCTGTGGTCCATCTG 57.882 50.000 0.00 0.00 0.00 2.90
7 8 2.885135 TTTGCATCTGTGGTCCATCT 57.115 45.000 0.00 0.00 0.00 2.90
8 9 2.821969 ACTTTTGCATCTGTGGTCCATC 59.178 45.455 0.00 0.00 0.00 3.51
9 10 2.880443 ACTTTTGCATCTGTGGTCCAT 58.120 42.857 0.00 0.00 0.00 3.41
10 11 2.363306 ACTTTTGCATCTGTGGTCCA 57.637 45.000 0.00 0.00 0.00 4.02
11 12 2.887152 AGAACTTTTGCATCTGTGGTCC 59.113 45.455 0.00 0.00 0.00 4.46
12 13 5.886960 ATAGAACTTTTGCATCTGTGGTC 57.113 39.130 0.00 0.00 0.00 4.02
13 14 6.655078 AAATAGAACTTTTGCATCTGTGGT 57.345 33.333 0.00 0.00 0.00 4.16
14 15 7.342318 CAAAATAGAACTTTTGCATCTGTGG 57.658 36.000 0.00 0.00 38.75 4.17
23 24 5.403466 GCTCAGGTGCAAAATAGAACTTTTG 59.597 40.000 0.00 5.20 44.96 2.44
24 25 5.302823 AGCTCAGGTGCAAAATAGAACTTTT 59.697 36.000 0.00 0.00 34.99 2.27
30 31 3.701205 TGAGCTCAGGTGCAAAATAGA 57.299 42.857 13.74 0.00 34.99 1.98
36 37 0.599558 GCATTTGAGCTCAGGTGCAA 59.400 50.000 32.97 20.50 37.72 4.08
130 135 7.156876 TCGAGGTGAAATTTTGCAAGAATAT 57.843 32.000 0.00 0.00 0.00 1.28
134 139 4.909696 TTCGAGGTGAAATTTTGCAAGA 57.090 36.364 0.00 0.00 32.37 3.02
149 154 4.572389 CCTTACTTGGATGTCATTTCGAGG 59.428 45.833 8.39 0.00 0.00 4.63
150 155 4.034510 GCCTTACTTGGATGTCATTTCGAG 59.965 45.833 0.00 0.00 0.00 4.04
151 156 3.938963 GCCTTACTTGGATGTCATTTCGA 59.061 43.478 0.00 0.00 0.00 3.71
157 162 2.945440 GCCATGCCTTACTTGGATGTCA 60.945 50.000 2.07 0.00 44.61 3.58
163 168 1.402720 CGTTTGCCATGCCTTACTTGG 60.403 52.381 0.00 0.00 44.63 3.61
165 170 1.904287 TCGTTTGCCATGCCTTACTT 58.096 45.000 0.00 0.00 0.00 2.24
166 171 1.904287 TTCGTTTGCCATGCCTTACT 58.096 45.000 0.00 0.00 0.00 2.24
168 173 3.735237 TTTTTCGTTTGCCATGCCTTA 57.265 38.095 0.00 0.00 0.00 2.69
174 179 4.881920 AGTGCTAATTTTTCGTTTGCCAT 58.118 34.783 0.00 0.00 0.00 4.40
182 187 7.359181 GGAAACATTTGGAGTGCTAATTTTTCG 60.359 37.037 17.34 0.26 0.00 3.46
183 188 7.440856 TGGAAACATTTGGAGTGCTAATTTTTC 59.559 33.333 16.37 16.37 33.40 2.29
187 192 6.418057 TTGGAAACATTTGGAGTGCTAATT 57.582 33.333 0.00 0.00 42.32 1.40
190 195 5.362430 AGTTTTGGAAACATTTGGAGTGCTA 59.638 36.000 6.35 0.00 42.32 3.49
198 203 9.224058 CAAAAATGCTAGTTTTGGAAACATTTG 57.776 29.630 11.45 0.00 40.63 2.32
270 275 6.913132 TGCTTGCAAAATTTCATCACAAAATG 59.087 30.769 0.00 0.00 0.00 2.32
275 280 6.221659 TGTATGCTTGCAAAATTTCATCACA 58.778 32.000 0.00 0.00 0.00 3.58
279 284 9.968870 AATTTTTGTATGCTTGCAAAATTTCAT 57.031 22.222 22.73 13.84 43.76 2.57
359 725 7.279750 TCCCTGGTAAACAGTAATTCAAAAC 57.720 36.000 0.00 0.00 46.06 2.43
361 727 5.475564 GCTCCCTGGTAAACAGTAATTCAAA 59.524 40.000 0.00 0.00 46.06 2.69
366 732 4.862641 ATGCTCCCTGGTAAACAGTAAT 57.137 40.909 0.00 0.00 46.06 1.89
375 742 2.405618 AGCTCATATGCTCCCTGGTA 57.594 50.000 0.00 0.00 39.34 3.25
399 766 1.794714 AGGGACATGGAGTATTCGCT 58.205 50.000 0.00 0.00 0.00 4.93
400 767 2.891580 TCTAGGGACATGGAGTATTCGC 59.108 50.000 0.00 0.00 0.00 4.70
401 768 4.399219 TCTCTAGGGACATGGAGTATTCG 58.601 47.826 0.00 0.00 0.00 3.34
403 770 4.530161 GCATCTCTAGGGACATGGAGTATT 59.470 45.833 0.00 0.00 0.00 1.89
406 773 2.090831 AGCATCTCTAGGGACATGGAGT 60.091 50.000 0.00 0.00 0.00 3.85
429 796 2.620251 ATGGTTCGCTAGCATTGCTA 57.380 45.000 17.11 17.11 42.12 3.49
430 797 2.620251 TATGGTTCGCTAGCATTGCT 57.380 45.000 16.63 16.63 42.12 3.91
431 798 3.904136 AATATGGTTCGCTAGCATTGC 57.096 42.857 16.45 0.00 42.12 3.56
432 799 6.785488 TCTTAATATGGTTCGCTAGCATTG 57.215 37.500 16.45 0.00 42.12 2.82
433 800 7.801716 TTTCTTAATATGGTTCGCTAGCATT 57.198 32.000 16.45 7.44 42.12 3.56
434 801 7.801716 TTTTCTTAATATGGTTCGCTAGCAT 57.198 32.000 16.45 2.42 46.28 3.79
435 802 7.618502 TTTTTCTTAATATGGTTCGCTAGCA 57.381 32.000 16.45 0.00 38.87 3.49
436 803 8.342634 TGATTTTTCTTAATATGGTTCGCTAGC 58.657 33.333 4.06 4.06 0.00 3.42
464 831 9.624373 CCTTCATGTTAACTAGTAGGAGTAGTA 57.376 37.037 14.11 0.00 33.44 1.82
465 832 7.560626 CCCTTCATGTTAACTAGTAGGAGTAGT 59.439 40.741 18.28 0.00 35.96 2.73
466 833 7.778853 TCCCTTCATGTTAACTAGTAGGAGTAG 59.221 40.741 18.28 7.56 0.00 2.57
467 834 7.645942 TCCCTTCATGTTAACTAGTAGGAGTA 58.354 38.462 18.28 6.91 0.00 2.59
468 835 6.500336 TCCCTTCATGTTAACTAGTAGGAGT 58.500 40.000 18.28 0.00 0.00 3.85
469 836 7.342284 TCTTCCCTTCATGTTAACTAGTAGGAG 59.658 40.741 18.28 11.95 0.00 3.69
470 837 7.186972 TCTTCCCTTCATGTTAACTAGTAGGA 58.813 38.462 18.28 10.62 0.00 2.94
471 838 7.124448 ACTCTTCCCTTCATGTTAACTAGTAGG 59.876 40.741 7.22 10.88 0.00 3.18
472 839 8.068892 ACTCTTCCCTTCATGTTAACTAGTAG 57.931 38.462 7.22 0.00 0.00 2.57
473 840 8.431910 AACTCTTCCCTTCATGTTAACTAGTA 57.568 34.615 7.22 0.00 0.00 1.82
474 841 6.936968 ACTCTTCCCTTCATGTTAACTAGT 57.063 37.500 7.22 0.00 0.00 2.57
475 842 9.720769 TTAAACTCTTCCCTTCATGTTAACTAG 57.279 33.333 7.22 0.00 0.00 2.57
477 844 8.847196 GTTTAAACTCTTCCCTTCATGTTAACT 58.153 33.333 11.18 0.00 0.00 2.24
478 845 8.847196 AGTTTAAACTCTTCCCTTCATGTTAAC 58.153 33.333 15.22 0.00 32.86 2.01
479 846 8.846211 CAGTTTAAACTCTTCCCTTCATGTTAA 58.154 33.333 18.00 0.00 37.08 2.01
480 847 8.215050 TCAGTTTAAACTCTTCCCTTCATGTTA 58.785 33.333 18.00 0.00 37.08 2.41
481 848 7.013369 GTCAGTTTAAACTCTTCCCTTCATGTT 59.987 37.037 18.00 0.00 37.08 2.71
482 849 6.486993 GTCAGTTTAAACTCTTCCCTTCATGT 59.513 38.462 18.00 0.00 37.08 3.21
483 850 6.347725 CGTCAGTTTAAACTCTTCCCTTCATG 60.348 42.308 18.00 3.94 37.08 3.07
484 851 5.701290 CGTCAGTTTAAACTCTTCCCTTCAT 59.299 40.000 18.00 0.00 37.08 2.57
485 852 5.054477 CGTCAGTTTAAACTCTTCCCTTCA 58.946 41.667 18.00 0.00 37.08 3.02
486 853 5.050295 CACGTCAGTTTAAACTCTTCCCTTC 60.050 44.000 18.00 2.70 37.08 3.46
487 854 4.814771 CACGTCAGTTTAAACTCTTCCCTT 59.185 41.667 18.00 0.00 37.08 3.95
488 855 4.377897 CACGTCAGTTTAAACTCTTCCCT 58.622 43.478 18.00 0.00 37.08 4.20
489 856 3.497262 CCACGTCAGTTTAAACTCTTCCC 59.503 47.826 18.00 4.00 37.08 3.97
490 857 3.059120 GCCACGTCAGTTTAAACTCTTCC 60.059 47.826 18.00 5.62 37.08 3.46
491 858 3.059120 GGCCACGTCAGTTTAAACTCTTC 60.059 47.826 18.00 10.11 37.08 2.87
492 859 2.876550 GGCCACGTCAGTTTAAACTCTT 59.123 45.455 18.00 0.00 37.08 2.85
493 860 2.490991 GGCCACGTCAGTTTAAACTCT 58.509 47.619 18.00 0.00 37.08 3.24
494 861 1.193874 CGGCCACGTCAGTTTAAACTC 59.806 52.381 18.00 7.37 34.24 3.01
495 862 1.223187 CGGCCACGTCAGTTTAAACT 58.777 50.000 15.22 15.22 35.90 2.66
496 863 0.236449 CCGGCCACGTCAGTTTAAAC 59.764 55.000 10.47 10.47 38.78 2.01
497 864 1.508808 GCCGGCCACGTCAGTTTAAA 61.509 55.000 18.11 0.00 38.78 1.52
498 865 1.962306 GCCGGCCACGTCAGTTTAA 60.962 57.895 18.11 0.00 38.78 1.52
499 866 2.357760 GCCGGCCACGTCAGTTTA 60.358 61.111 18.11 0.00 38.78 2.01
514 881 3.451894 CTGTTGGATTGGCCGGCC 61.452 66.667 39.40 39.40 40.66 6.13
515 882 3.451894 CCTGTTGGATTGGCCGGC 61.452 66.667 21.18 21.18 40.66 6.13
516 883 1.184970 AAACCTGTTGGATTGGCCGG 61.185 55.000 0.00 0.00 40.66 6.13
517 884 0.678950 AAAACCTGTTGGATTGGCCG 59.321 50.000 0.00 0.00 40.66 6.13
518 885 5.869649 ATATAAAACCTGTTGGATTGGCC 57.130 39.130 0.00 0.00 37.04 5.36
519 886 6.756542 GTGAATATAAAACCTGTTGGATTGGC 59.243 38.462 0.00 0.00 37.04 4.52
520 887 7.835822 TGTGAATATAAAACCTGTTGGATTGG 58.164 34.615 0.00 0.00 37.04 3.16
521 888 8.739039 TCTGTGAATATAAAACCTGTTGGATTG 58.261 33.333 0.00 0.00 37.04 2.67
522 889 8.877864 TCTGTGAATATAAAACCTGTTGGATT 57.122 30.769 0.00 0.00 37.04 3.01
523 890 7.067494 GCTCTGTGAATATAAAACCTGTTGGAT 59.933 37.037 0.00 0.00 37.04 3.41
524 891 6.374333 GCTCTGTGAATATAAAACCTGTTGGA 59.626 38.462 0.00 0.00 37.04 3.53
525 892 6.150976 TGCTCTGTGAATATAAAACCTGTTGG 59.849 38.462 0.00 0.00 39.83 3.77
526 893 7.144722 TGCTCTGTGAATATAAAACCTGTTG 57.855 36.000 0.00 0.00 0.00 3.33
527 894 7.665559 TCTTGCTCTGTGAATATAAAACCTGTT 59.334 33.333 0.00 0.00 0.00 3.16
528 895 7.168219 TCTTGCTCTGTGAATATAAAACCTGT 58.832 34.615 0.00 0.00 0.00 4.00
529 896 7.335422 ACTCTTGCTCTGTGAATATAAAACCTG 59.665 37.037 0.00 0.00 0.00 4.00
530 897 7.335422 CACTCTTGCTCTGTGAATATAAAACCT 59.665 37.037 0.00 0.00 33.95 3.50
531 898 7.119846 ACACTCTTGCTCTGTGAATATAAAACC 59.880 37.037 0.00 0.00 35.83 3.27
532 899 8.034058 ACACTCTTGCTCTGTGAATATAAAAC 57.966 34.615 0.00 0.00 35.83 2.43
533 900 8.097038 AGACACTCTTGCTCTGTGAATATAAAA 58.903 33.333 0.00 0.00 35.83 1.52
534 901 7.615403 AGACACTCTTGCTCTGTGAATATAAA 58.385 34.615 0.00 0.00 35.83 1.40
535 902 7.175347 AGACACTCTTGCTCTGTGAATATAA 57.825 36.000 0.00 0.00 35.83 0.98
536 903 6.782082 AGACACTCTTGCTCTGTGAATATA 57.218 37.500 0.00 0.00 35.83 0.86
537 904 5.674052 AGACACTCTTGCTCTGTGAATAT 57.326 39.130 0.00 0.00 35.83 1.28
538 905 5.474578 AAGACACTCTTGCTCTGTGAATA 57.525 39.130 0.00 0.00 34.98 1.75
539 906 4.348863 AAGACACTCTTGCTCTGTGAAT 57.651 40.909 0.00 0.00 34.98 2.57
540 907 3.827008 AAGACACTCTTGCTCTGTGAA 57.173 42.857 0.00 0.00 34.98 3.18
553 920 5.107220 CGGTTGTTAATTAGCGAAAGACACT 60.107 40.000 5.72 0.00 37.44 3.55
576 943 4.996758 TGCATATATGATTGAGTTGGGTCG 59.003 41.667 17.10 0.00 0.00 4.79
577 944 6.127814 CCATGCATATATGATTGAGTTGGGTC 60.128 42.308 17.10 0.00 0.00 4.46
581 948 7.392393 TCCTTCCATGCATATATGATTGAGTTG 59.608 37.037 17.10 2.78 0.00 3.16
594 964 4.776435 TGTTCAGATCCTTCCATGCATA 57.224 40.909 0.00 0.00 0.00 3.14
661 1037 1.728971 CGCACTCACTGATTGTTCTCC 59.271 52.381 0.00 0.00 0.00 3.71
846 1223 4.760047 TTTGCCGAGGAGCTCCGC 62.760 66.667 26.95 26.09 42.08 5.54
898 1279 6.375455 ACCAATTATCACCTCTGCTAAACTTG 59.625 38.462 0.00 0.00 0.00 3.16
922 1309 0.253327 GAGGAATGGGTGGGACTGAC 59.747 60.000 0.00 0.00 0.00 3.51
934 1321 2.200081 TCCAAAGGAGGGAGAGGAATG 58.800 52.381 0.00 0.00 0.00 2.67
977 1364 0.882474 AAACAGACGGAGGAGACGAG 59.118 55.000 0.00 0.00 34.93 4.18
1215 1626 1.034838 GGCCGGACATAACAATGCCA 61.035 55.000 5.05 0.00 37.36 4.92
1221 1632 2.266372 CGGTGGCCGGACATAACA 59.734 61.111 16.47 0.00 44.15 2.41
1256 1667 1.945354 GCTGCTGGTGCTCGTAGGTA 61.945 60.000 0.00 0.00 40.48 3.08
1290 1701 0.250814 ACGTCTTCTCGGAGACACCT 60.251 55.000 7.33 0.00 44.98 4.00
1293 1704 1.296755 CGGACGTCTTCTCGGAGACA 61.297 60.000 16.46 0.00 44.98 3.41
1361 1781 1.675641 GCATTGCTCCACGGGAACT 60.676 57.895 0.16 0.00 0.00 3.01
1398 1818 1.250840 GCTGGAAATGGAAGCCGGTT 61.251 55.000 1.90 0.00 0.00 4.44
1410 1830 1.056660 AGTTCTTCTCGGGCTGGAAA 58.943 50.000 0.00 0.00 0.00 3.13
1469 1929 8.718102 TGGCTTTATCTCTATCAACTAACAAC 57.282 34.615 0.00 0.00 0.00 3.32
1475 2000 6.328672 ACATCCTGGCTTTATCTCTATCAACT 59.671 38.462 0.00 0.00 0.00 3.16
1476 2001 6.529220 ACATCCTGGCTTTATCTCTATCAAC 58.471 40.000 0.00 0.00 0.00 3.18
1478 2003 7.013220 AGTACATCCTGGCTTTATCTCTATCA 58.987 38.462 0.00 0.00 0.00 2.15
1479 2004 7.396055 AGAGTACATCCTGGCTTTATCTCTATC 59.604 40.741 0.00 0.00 0.00 2.08
1481 2006 6.491745 CAGAGTACATCCTGGCTTTATCTCTA 59.508 42.308 0.00 0.00 0.00 2.43
1483 2008 5.303078 TCAGAGTACATCCTGGCTTTATCTC 59.697 44.000 0.00 0.00 0.00 2.75
1484 2009 5.211973 TCAGAGTACATCCTGGCTTTATCT 58.788 41.667 0.00 0.00 0.00 1.98
1486 2011 5.957771 TTCAGAGTACATCCTGGCTTTAT 57.042 39.130 0.00 0.00 0.00 1.40
1487 2012 5.957771 ATTCAGAGTACATCCTGGCTTTA 57.042 39.130 0.00 0.00 0.00 1.85
1490 2015 6.100279 TGAATTATTCAGAGTACATCCTGGCT 59.900 38.462 3.20 0.00 34.08 4.75
1491 2016 6.291377 TGAATTATTCAGAGTACATCCTGGC 58.709 40.000 3.20 0.00 34.08 4.85
1510 2035 9.739276 TTTGTATGAGAATCCTGTAACTGAATT 57.261 29.630 0.00 0.00 0.00 2.17
1511 2036 9.911788 ATTTGTATGAGAATCCTGTAACTGAAT 57.088 29.630 0.00 0.00 0.00 2.57
1512 2037 9.383519 GATTTGTATGAGAATCCTGTAACTGAA 57.616 33.333 0.00 0.00 0.00 3.02
1513 2038 8.539544 TGATTTGTATGAGAATCCTGTAACTGA 58.460 33.333 0.00 0.00 32.57 3.41
1514 2039 8.722480 TGATTTGTATGAGAATCCTGTAACTG 57.278 34.615 0.00 0.00 32.57 3.16
1519 2044 8.663167 TGGATATGATTTGTATGAGAATCCTGT 58.337 33.333 0.00 0.00 33.17 4.00
1520 2045 9.682465 ATGGATATGATTTGTATGAGAATCCTG 57.318 33.333 0.00 0.00 33.17 3.86
1521 2046 9.682465 CATGGATATGATTTGTATGAGAATCCT 57.318 33.333 0.00 0.00 36.36 3.24
1522 2047 8.404000 GCATGGATATGATTTGTATGAGAATCC 58.596 37.037 0.00 0.00 36.36 3.01
1523 2048 8.953313 TGCATGGATATGATTTGTATGAGAATC 58.047 33.333 0.00 0.00 36.36 2.52
1524 2049 8.873186 TGCATGGATATGATTTGTATGAGAAT 57.127 30.769 0.00 0.00 36.36 2.40
1525 2050 8.694581 TTGCATGGATATGATTTGTATGAGAA 57.305 30.769 0.00 0.00 36.36 2.87
1526 2051 8.694581 TTTGCATGGATATGATTTGTATGAGA 57.305 30.769 0.00 0.00 36.36 3.27
1527 2052 9.353999 CATTTGCATGGATATGATTTGTATGAG 57.646 33.333 11.36 0.00 36.36 2.90
1528 2053 7.815549 GCATTTGCATGGATATGATTTGTATGA 59.184 33.333 19.17 0.00 41.59 2.15
1529 2054 7.959733 GCATTTGCATGGATATGATTTGTATG 58.040 34.615 19.17 0.00 41.59 2.39
1624 2149 1.967066 TGACCCCATGCGATTTTGTTT 59.033 42.857 0.00 0.00 0.00 2.83
1630 2155 2.824041 GCGTGACCCCATGCGATT 60.824 61.111 0.00 0.00 44.34 3.34
1648 2173 3.959991 GAGCAAGTCACGGGAGGCC 62.960 68.421 0.00 0.00 0.00 5.19
1657 2182 2.125552 CGCCATCGGAGCAAGTCA 60.126 61.111 0.00 0.00 0.00 3.41
1675 2200 4.778143 ATGGCGACGGGAAGGTGC 62.778 66.667 0.00 0.00 0.00 5.01
1700 2225 3.334691 CATTGATGTCGTACCACTGGTT 58.665 45.455 5.90 0.00 37.09 3.67
1851 2376 3.981071 TCTCATACTTGGTCCAGTTGG 57.019 47.619 0.00 0.00 0.00 3.77
1952 2477 0.895100 ACAAGCCGCCATGTGTCATT 60.895 50.000 0.00 0.00 0.00 2.57
1969 2494 2.115427 TCATCCTTGGAGCCGATAACA 58.885 47.619 0.00 0.00 0.00 2.41
2053 2578 1.071814 TACACGGTGAAGCAACCCC 59.928 57.895 16.29 0.00 36.84 4.95
2125 2650 1.065572 CGTCCGTCATATCGATGCCG 61.066 60.000 8.54 4.63 34.25 5.69
2154 2679 2.180769 CTCCATTCGTGGACGCGA 59.819 61.111 15.93 3.59 39.60 5.87
2170 2695 1.574428 GTGCAAAACATCGTCGCCT 59.426 52.632 0.00 0.00 0.00 5.52
2216 2741 2.789917 CGCGTAGTAGTCGTGCCT 59.210 61.111 0.00 0.00 32.44 4.75
2263 2788 1.304134 GGTGTCCAATGGGGTCCAC 60.304 63.158 0.00 1.81 35.80 4.02
2335 2860 1.331756 GCCGGATCGTAGAACGTCTTA 59.668 52.381 5.05 0.00 43.58 2.10
2368 2893 3.021263 ACCCACCCCCATAGCACC 61.021 66.667 0.00 0.00 0.00 5.01
2416 2941 4.115199 GACGCCCATCCCTTGGCT 62.115 66.667 0.00 0.00 45.71 4.75
2471 2999 5.920273 ACCAATTGATTTCACTAACTTTGCG 59.080 36.000 7.12 0.00 0.00 4.85
2662 3778 7.506361 TGCTATCTATCCATGATTCATCCTT 57.494 36.000 0.00 0.00 0.00 3.36
2663 3779 7.347485 TGATGCTATCTATCCATGATTCATCCT 59.653 37.037 0.00 0.00 34.98 3.24
2717 5207 1.129326 GACACTTGACAACGAGACGG 58.871 55.000 0.00 0.00 0.00 4.79
2719 5209 3.357166 AGAGACACTTGACAACGAGAC 57.643 47.619 0.00 0.00 0.00 3.36
2848 5455 2.171027 TCTTGTGTAACCCGAGTTTGGT 59.829 45.455 0.00 0.00 37.42 3.67
2856 5463 2.578786 ACCCTTTTCTTGTGTAACCCG 58.421 47.619 0.00 0.00 34.36 5.28
2859 5466 5.032220 CGACAAACCCTTTTCTTGTGTAAC 58.968 41.667 0.00 0.00 33.53 2.50
2863 5470 2.159310 TGCGACAAACCCTTTTCTTGTG 60.159 45.455 0.00 0.00 33.53 3.33
2877 5494 2.730715 GCAGAGTTTGTTTGTGCGACAA 60.731 45.455 0.00 0.00 36.11 3.18
2882 5499 3.308530 GGTATGCAGAGTTTGTTTGTGC 58.691 45.455 0.00 0.00 34.62 4.57
2906 5757 1.004628 TGCTACCACATGATTGCCTGT 59.995 47.619 0.00 0.00 0.00 4.00
2907 5758 1.753930 TGCTACCACATGATTGCCTG 58.246 50.000 0.00 0.00 0.00 4.85
2928 5779 0.620030 TGCCACTAGACCACATGCAT 59.380 50.000 0.00 0.00 0.00 3.96
2931 5782 0.745845 GCCTGCCACTAGACCACATG 60.746 60.000 0.00 0.00 0.00 3.21
2932 5783 1.200760 TGCCTGCCACTAGACCACAT 61.201 55.000 0.00 0.00 0.00 3.21
2933 5784 1.414866 TTGCCTGCCACTAGACCACA 61.415 55.000 0.00 0.00 0.00 4.17
2934 5785 0.250727 TTTGCCTGCCACTAGACCAC 60.251 55.000 0.00 0.00 0.00 4.16
2935 5786 0.036732 CTTTGCCTGCCACTAGACCA 59.963 55.000 0.00 0.00 0.00 4.02
2936 5787 0.678048 CCTTTGCCTGCCACTAGACC 60.678 60.000 0.00 0.00 0.00 3.85
3017 5868 5.075900 ACCCTTTTCCTTCTCTAATCCCAAA 59.924 40.000 0.00 0.00 0.00 3.28
3029 5881 4.036852 CAGACAAGACAACCCTTTTCCTTC 59.963 45.833 0.00 0.00 0.00 3.46
3062 6224 4.395231 GCCGAAAGAATTGCTAACTAACCT 59.605 41.667 0.00 0.00 0.00 3.50
3083 6245 2.474816 GTATCATTCACCGTCTGAGCC 58.525 52.381 0.00 0.00 0.00 4.70
3141 6305 7.751768 AATTATACAGCAAAGAATCCTAGGC 57.248 36.000 2.96 0.00 0.00 3.93
3185 6374 4.561213 TCGACTGCAAGATAACAACATACG 59.439 41.667 0.00 0.00 37.43 3.06
3264 6462 1.680651 CGTCTCCAGCTCCTCCACT 60.681 63.158 0.00 0.00 0.00 4.00
3306 6504 2.994995 TCGACGGTGATGCCCTGT 60.995 61.111 0.00 0.00 0.00 4.00
3307 6505 2.509336 GTCGACGGTGATGCCCTG 60.509 66.667 0.00 0.00 0.00 4.45
3308 6506 3.771160 GGTCGACGGTGATGCCCT 61.771 66.667 9.92 0.00 0.00 5.19
3309 6507 4.077184 TGGTCGACGGTGATGCCC 62.077 66.667 9.92 0.00 0.00 5.36
3351 6549 0.453282 CAAGTTGAGTTGCGCGATGG 60.453 55.000 12.10 0.00 0.00 3.51
3363 6561 2.106338 TGAGGCCTCAATGTCAAGTTGA 59.894 45.455 33.41 4.56 36.53 3.18
3369 6567 1.407299 CGGAATGAGGCCTCAATGTCA 60.407 52.381 38.02 16.32 43.58 3.58
3400 6598 2.202878 GGCTGCGGCGACATCTAA 60.203 61.111 12.98 0.00 39.81 2.10
3515 6713 2.685366 CATCCCCACCATGGTGCT 59.315 61.111 35.34 18.21 44.16 4.40
3555 6753 0.468226 CAAGGCCCCTCGCTACATAA 59.532 55.000 0.00 0.00 37.74 1.90
3561 6759 3.801997 CCATCAAGGCCCCTCGCT 61.802 66.667 0.00 0.00 37.74 4.93
3580 6778 2.974698 GAAGTGTGTGCGCAGGCT 60.975 61.111 12.22 3.40 40.82 4.58
3618 6816 0.447406 CAATGTCATTGGCGCGAGAA 59.553 50.000 12.10 0.26 36.63 2.87
3676 6874 1.228583 TCACTGACAGGTCCTCGCT 60.229 57.895 7.51 0.00 0.00 4.93
3697 6895 3.180449 TGGAGTGGTCCACCAGAAT 57.820 52.632 18.80 0.00 46.77 2.40
3718 6916 2.653234 CCCATGGCAAAGCTCTCTAT 57.347 50.000 6.09 0.00 0.00 1.98
3732 6930 4.489771 GTGGACCTCCCGCCCATG 62.490 72.222 0.00 0.00 39.55 3.66
3947 7156 4.940654 GGGAGTGAGGAGAAAATCAGAAAG 59.059 45.833 0.00 0.00 0.00 2.62
4003 7213 7.618019 AGGCCTAGACAATGAATAGACATAA 57.382 36.000 1.29 0.00 0.00 1.90
4010 7220 4.721776 ACTGGAAGGCCTAGACAATGAATA 59.278 41.667 5.16 0.00 39.30 1.75
4034 7244 1.816835 CCACTGGCTCGACTACAACTA 59.183 52.381 0.00 0.00 0.00 2.24
4044 7254 1.817099 GGCATCTTCCACTGGCTCG 60.817 63.158 0.00 0.00 35.25 5.03
4049 7259 3.190744 GCATATCATGGCATCTTCCACTG 59.809 47.826 0.00 0.00 39.25 3.66
4143 7354 2.228822 GTGTGAACCAATCAGCCGAAAT 59.771 45.455 0.00 0.00 39.19 2.17
4153 7364 3.470709 CTGTGAGACAGTGTGAACCAAT 58.529 45.455 0.00 0.00 41.19 3.16
4162 7373 3.696548 TGTAGATAGCCTGTGAGACAGTG 59.303 47.826 3.18 0.00 44.50 3.66
4199 7410 2.414481 GCTTGTGTGCATACAGAGACAG 59.586 50.000 16.17 11.47 37.52 3.51
4242 7453 3.129287 ACAACCACTTTCAACTTCAGCAG 59.871 43.478 0.00 0.00 0.00 4.24
4250 7485 5.465935 TCAAACTCAACAACCACTTTCAAC 58.534 37.500 0.00 0.00 0.00 3.18
4261 7496 3.951680 GGGGACTTCTTCAAACTCAACAA 59.048 43.478 0.00 0.00 0.00 2.83
4275 7510 3.447944 AGTCGAGTAAATGAGGGGACTTC 59.552 47.826 0.00 0.00 44.43 3.01
4323 7560 7.553334 TGGTCCATCTTTACACTAGATTACAC 58.447 38.462 0.00 0.00 30.05 2.90
4324 7561 7.147724 CCTGGTCCATCTTTACACTAGATTACA 60.148 40.741 0.00 0.00 30.05 2.41
4329 7566 3.451178 GCCTGGTCCATCTTTACACTAGA 59.549 47.826 0.00 0.00 0.00 2.43
4334 7597 0.251916 CCGCCTGGTCCATCTTTACA 59.748 55.000 0.00 0.00 0.00 2.41
4370 7633 2.668556 CGGCAGCACGACCTAGTATATG 60.669 54.545 0.00 0.00 35.47 1.78
4373 7636 1.734137 CGGCAGCACGACCTAGTAT 59.266 57.895 0.00 0.00 35.47 2.12
4374 7637 2.412323 CCGGCAGCACGACCTAGTA 61.412 63.158 4.99 0.00 35.47 1.82
4375 7638 3.760035 CCGGCAGCACGACCTAGT 61.760 66.667 4.99 0.00 35.47 2.57
4422 7685 4.508551 ACTATGGTGCATCAAGGATGAA 57.491 40.909 2.42 0.00 42.09 2.57
4456 7719 7.443272 TGTGGTCGGATGGTATATATCTATACG 59.557 40.741 0.00 1.68 40.37 3.06
4457 7720 8.566260 GTGTGGTCGGATGGTATATATCTATAC 58.434 40.741 0.00 0.66 39.25 1.47
4505 7768 4.041691 TCCCCTTTCTTACTTGGAACAGAG 59.958 45.833 0.00 0.00 42.39 3.35
4524 7787 3.496331 TGATCCTTGTTCTGTTTTCCCC 58.504 45.455 0.00 0.00 0.00 4.81
4646 7910 7.783042 ACTAGTACTTTGAATCTATGGGTCAC 58.217 38.462 0.00 0.00 0.00 3.67
4713 8139 7.880160 TGTCTAAGGAAAAATATGTCCCATG 57.120 36.000 0.00 0.00 34.13 3.66
4755 8181 4.846779 TTTACTTGCCATGACCAGTTTC 57.153 40.909 0.00 0.00 0.00 2.78


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.