Multiple sequence alignment - TraesCS6B01G029900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G029900 chr6B 100.000 4557 0 0 1 4557 18014092 18018648 0.000000e+00 8416.0
1 TraesCS6B01G029900 chr6B 97.436 3510 65 3 1 3487 17730610 17727103 0.000000e+00 5960.0
2 TraesCS6B01G029900 chr6B 100.000 1096 0 0 4853 5948 18018944 18020039 0.000000e+00 2025.0
3 TraesCS6B01G029900 chr6B 96.610 1121 38 0 3437 4557 17727102 17725982 0.000000e+00 1860.0
4 TraesCS6B01G029900 chr6B 81.654 1886 312 19 1483 3353 17764465 17762599 0.000000e+00 1535.0
5 TraesCS6B01G029900 chr6B 81.031 1824 323 14 1446 3256 18266419 18268232 0.000000e+00 1430.0
6 TraesCS6B01G029900 chr6B 95.346 795 32 1 4853 5647 17725888 17725099 0.000000e+00 1258.0
7 TraesCS6B01G029900 chr6B 79.083 1788 334 30 1493 3257 18225434 18227204 0.000000e+00 1194.0
8 TraesCS6B01G029900 chr6B 84.021 388 55 4 4121 4504 18269097 18269481 3.390000e-97 366.0
9 TraesCS6B01G029900 chr6B 78.739 555 104 11 2707 3257 18240884 18241428 5.670000e-95 359.0
10 TraesCS6B01G029900 chr6B 78.058 556 106 11 2707 3257 18400749 18400205 2.660000e-88 337.0
11 TraesCS6B01G029900 chr6B 80.357 392 68 7 4121 4504 18431733 18432123 7.540000e-74 289.0
12 TraesCS6B01G029900 chr6B 86.957 92 11 1 3797 3887 18816634 18816725 1.050000e-17 102.0
13 TraesCS6B01G029900 chr6B 89.655 58 4 1 3805 3862 18633194 18633249 8.270000e-09 73.1
14 TraesCS6B01G029900 chr6D 92.045 3256 189 24 1364 4557 9852705 9849458 0.000000e+00 4514.0
15 TraesCS6B01G029900 chr6D 81.514 1942 309 34 1341 3256 10310694 10308777 0.000000e+00 1552.0
16 TraesCS6B01G029900 chr6D 81.302 1936 329 19 1432 3353 9860578 9858662 0.000000e+00 1539.0
17 TraesCS6B01G029900 chr6D 79.847 1955 340 27 1341 3257 9912859 9914797 0.000000e+00 1378.0
18 TraesCS6B01G029900 chr6D 88.318 779 70 7 4876 5647 9849343 9848579 0.000000e+00 915.0
19 TraesCS6B01G029900 chr6D 88.275 742 54 12 391 1101 9853482 9852743 0.000000e+00 857.0
20 TraesCS6B01G029900 chr6D 79.915 473 85 8 4040 4504 9915607 9916077 7.380000e-89 339.0
21 TraesCS6B01G029900 chr6D 100.000 33 0 0 1346 1378 9852743 9852711 1.790000e-05 62.1
22 TraesCS6B01G029900 chr6A 91.316 2234 146 15 2319 4505 10931946 10929714 0.000000e+00 3007.0
23 TraesCS6B01G029900 chr6A 80.459 1919 317 37 1342 3237 11681427 11679544 0.000000e+00 1413.0
24 TraesCS6B01G029900 chr6A 80.571 1786 300 29 1479 3251 11732793 11731042 0.000000e+00 1332.0
25 TraesCS6B01G029900 chr6A 84.321 759 76 19 4898 5647 10929409 10928685 0.000000e+00 702.0
26 TraesCS6B01G029900 chr6A 93.750 384 12 9 1308 1680 10953384 10953002 3.110000e-157 566.0
27 TraesCS6B01G029900 chr6A 94.352 301 17 0 5648 5948 260439398 260439698 4.200000e-126 462.0
28 TraesCS6B01G029900 chr6A 94.040 302 18 0 5647 5948 613599988 613600289 5.430000e-125 459.0
29 TraesCS6B01G029900 chr6A 78.631 716 93 36 446 1127 11467535 11468224 2.560000e-113 420.0
30 TraesCS6B01G029900 chr6A 76.634 826 108 39 363 1134 11682275 11681481 1.560000e-100 377.0
31 TraesCS6B01G029900 chr6A 79.015 467 88 8 4046 4504 11678717 11678253 1.610000e-80 311.0
32 TraesCS6B01G029900 chr6A 79.060 468 86 10 4046 4504 11730228 11729764 1.610000e-80 311.0
33 TraesCS6B01G029900 chr6A 93.865 163 10 0 2161 2323 10937578 10937416 4.600000e-61 246.0
34 TraesCS6B01G029900 chr6A 85.549 173 18 3 966 1134 11747269 11747100 2.200000e-39 174.0
35 TraesCS6B01G029900 chr7A 95.017 301 15 0 5648 5948 173069713 173070013 1.940000e-129 473.0
36 TraesCS6B01G029900 chr7A 94.040 302 18 0 5647 5948 109368817 109368516 5.430000e-125 459.0
37 TraesCS6B01G029900 chr3D 94.352 301 17 0 5648 5948 573450502 573450802 4.200000e-126 462.0
38 TraesCS6B01G029900 chr3D 93.770 305 18 1 5644 5948 573446421 573446724 1.950000e-124 457.0
39 TraesCS6B01G029900 chr2D 94.371 302 15 2 5648 5948 556343003 556342703 4.200000e-126 462.0
40 TraesCS6B01G029900 chr2D 96.970 33 0 1 5136 5168 15457608 15457577 3.000000e-03 54.7
41 TraesCS6B01G029900 chr2D 100.000 28 0 0 5136 5163 15514820 15514793 1.100000e-02 52.8
42 TraesCS6B01G029900 chr3B 94.915 295 14 1 5654 5948 160366363 160366070 1.510000e-125 460.0
43 TraesCS6B01G029900 chr5B 94.040 302 18 0 5647 5948 522854146 522853845 5.430000e-125 459.0
44 TraesCS6B01G029900 chrUn 76.512 843 129 38 320 1132 300672821 300673624 4.320000e-106 396.0
45 TraesCS6B01G029900 chrUn 95.122 41 2 0 4047 4087 240894357 240894397 1.380000e-06 65.8
46 TraesCS6B01G029900 chrUn 95.122 41 2 0 4047 4087 268929543 268929503 1.380000e-06 65.8
47 TraesCS6B01G029900 chr2A 100.000 34 0 0 5136 5169 17507672 17507639 4.980000e-06 63.9
48 TraesCS6B01G029900 chr2A 94.595 37 2 0 5136 5172 17597110 17597074 2.320000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G029900 chr6B 18014092 18020039 5947 False 5220.500000 8416 100.000000 1 5948 2 chr6B.!!$F6 5947
1 TraesCS6B01G029900 chr6B 17725099 17730610 5511 True 3026.000000 5960 96.464000 1 5647 3 chr6B.!!$R3 5646
2 TraesCS6B01G029900 chr6B 17762599 17764465 1866 True 1535.000000 1535 81.654000 1483 3353 1 chr6B.!!$R1 1870
3 TraesCS6B01G029900 chr6B 18225434 18227204 1770 False 1194.000000 1194 79.083000 1493 3257 1 chr6B.!!$F1 1764
4 TraesCS6B01G029900 chr6B 18266419 18269481 3062 False 898.000000 1430 82.526000 1446 4504 2 chr6B.!!$F7 3058
5 TraesCS6B01G029900 chr6B 18240884 18241428 544 False 359.000000 359 78.739000 2707 3257 1 chr6B.!!$F2 550
6 TraesCS6B01G029900 chr6B 18400205 18400749 544 True 337.000000 337 78.058000 2707 3257 1 chr6B.!!$R2 550
7 TraesCS6B01G029900 chr6D 9848579 9853482 4903 True 1587.025000 4514 92.159500 391 5647 4 chr6D.!!$R3 5256
8 TraesCS6B01G029900 chr6D 10308777 10310694 1917 True 1552.000000 1552 81.514000 1341 3256 1 chr6D.!!$R2 1915
9 TraesCS6B01G029900 chr6D 9858662 9860578 1916 True 1539.000000 1539 81.302000 1432 3353 1 chr6D.!!$R1 1921
10 TraesCS6B01G029900 chr6D 9912859 9916077 3218 False 858.500000 1378 79.881000 1341 4504 2 chr6D.!!$F1 3163
11 TraesCS6B01G029900 chr6A 10928685 10931946 3261 True 1854.500000 3007 87.818500 2319 5647 2 chr6A.!!$R4 3328
12 TraesCS6B01G029900 chr6A 11729764 11732793 3029 True 821.500000 1332 79.815500 1479 4504 2 chr6A.!!$R6 3025
13 TraesCS6B01G029900 chr6A 11678253 11682275 4022 True 700.333333 1413 78.702667 363 4504 3 chr6A.!!$R5 4141
14 TraesCS6B01G029900 chr6A 11467535 11468224 689 False 420.000000 420 78.631000 446 1127 1 chr6A.!!$F1 681
15 TraesCS6B01G029900 chr3D 573446421 573450802 4381 False 459.500000 462 94.061000 5644 5948 2 chr3D.!!$F1 304
16 TraesCS6B01G029900 chrUn 300672821 300673624 803 False 396.000000 396 76.512000 320 1132 1 chrUn.!!$F2 812

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
71 72 3.344515 GAATACCCCGCCAAGATTATCC 58.655 50.000 0.00 0.0 0.0 2.59 F
177 178 3.769300 TGTGATGTCATATATCCCCCTCG 59.231 47.826 0.00 0.0 0.0 4.63 F
1719 1852 1.517257 CATCCACGTCGACTGCTCC 60.517 63.158 14.70 0.0 0.0 4.70 F
2309 2445 1.540363 GGTATGCGACGGGATCATTGT 60.540 52.381 0.00 0.0 0.0 2.71 F
3900 4259 1.340893 CCCATGGTGCATCAAGGTACA 60.341 52.381 19.38 0.0 0.0 2.90 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1719 1852 1.805869 CTCTTGTGCTCTCCCACTTG 58.194 55.000 0.00 0.0 36.68 3.16 R
2309 2445 2.291465 GCTTTGTCAATGTCTGTCAGCA 59.709 45.455 0.00 0.0 0.00 4.41 R
3141 3304 0.036952 CACTTGTGCCCGAGATGTCT 60.037 55.000 0.00 0.0 0.00 3.41 R
4207 4569 0.804989 CGCCTCAGCTTCGGAAATTT 59.195 50.000 2.22 0.0 36.60 1.82 R
5296 5807 0.892358 ACAGAGGAGTACGACGGCAA 60.892 55.000 0.00 0.0 0.00 4.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 3.503827 CATCGCAGAGGTTGTACACTA 57.496 47.619 0.00 0.00 43.63 2.74
71 72 3.344515 GAATACCCCGCCAAGATTATCC 58.655 50.000 0.00 0.00 0.00 2.59
122 123 5.043248 CAGCAAAGGTCCAACTTTACTTTG 58.957 41.667 10.20 10.20 46.45 2.77
123 124 4.953579 AGCAAAGGTCCAACTTTACTTTGA 59.046 37.500 16.79 0.00 46.58 2.69
177 178 3.769300 TGTGATGTCATATATCCCCCTCG 59.231 47.826 0.00 0.00 0.00 4.63
312 313 5.206587 AGAAGCATGCCAAGGAGATAAATT 58.793 37.500 15.66 0.00 0.00 1.82
325 326 9.243105 CAAGGAGATAAATTAGGGACTTCAAAA 57.757 33.333 0.00 0.00 41.75 2.44
578 599 4.630111 TGGAAAGCAAAAGGTAAAGCATG 58.370 39.130 0.00 0.00 0.00 4.06
1141 1223 7.550906 TCTTTGGGTAAAATTTTGTTTGTCAGG 59.449 33.333 13.76 0.00 0.00 3.86
1169 1251 9.490663 CGGTCATTGATTAATTACTTCTTGAAC 57.509 33.333 0.00 0.00 0.00 3.18
1719 1852 1.517257 CATCCACGTCGACTGCTCC 60.517 63.158 14.70 0.00 0.00 4.70
2309 2445 1.540363 GGTATGCGACGGGATCATTGT 60.540 52.381 0.00 0.00 0.00 2.71
2538 2680 3.181455 ACATGTTTCAGCACTCACACCTA 60.181 43.478 0.00 0.00 0.00 3.08
2623 2765 3.327172 CCATAGCCTGAGATTCCTGTCAT 59.673 47.826 0.00 0.00 0.00 3.06
3137 3300 3.556004 GGATATTTCTCGAGCCTTGAGGG 60.556 52.174 7.81 0.00 34.19 4.30
3407 3651 2.307686 AGGGGTGGAAGATTTCGCTTAA 59.692 45.455 0.00 0.00 0.00 1.85
3900 4259 1.340893 CCCATGGTGCATCAAGGTACA 60.341 52.381 19.38 0.00 0.00 2.90
3907 4266 4.263462 TGGTGCATCAAGGTACATTCTCTT 60.263 41.667 0.00 0.00 0.00 2.85
4023 4382 8.458843 ACTGCAACAATGTATATTAAACACTCC 58.541 33.333 0.00 0.00 0.00 3.85
4271 4633 1.529152 CTGCAGAGCATTTGTGGGCA 61.529 55.000 8.42 0.00 38.13 5.36
4317 4679 0.107508 CCATCAAGATCACGGGCTGT 60.108 55.000 0.00 0.00 0.00 4.40
4393 4755 0.250234 CTGCGAGAAGGAATGGTGGA 59.750 55.000 0.00 0.00 0.00 4.02
4437 4805 3.562732 GAACCACCACCCTTCCCGG 62.563 68.421 0.00 0.00 0.00 5.73
4476 4844 3.554337 CGTTGTACTACAAGGGTCAGCTT 60.554 47.826 12.09 0.00 39.00 3.74
4994 5501 0.038166 GTTCCCCTCAACCTGCATCA 59.962 55.000 0.00 0.00 0.00 3.07
4996 5503 0.038166 TCCCCTCAACCTGCATCAAC 59.962 55.000 0.00 0.00 0.00 3.18
5006 5513 1.332686 CCTGCATCAACATGTGGATCG 59.667 52.381 13.10 9.92 31.39 3.69
5028 5535 4.560128 GTGCACATCTACAGAACTGAAGA 58.440 43.478 13.17 0.00 0.00 2.87
5059 5570 2.965520 TTGCTGCCCATGCGTCCTA 61.966 57.895 0.00 0.00 41.78 2.94
5062 5573 2.203195 TGCCCATGCGTCCTATGC 60.203 61.111 0.00 0.00 41.78 3.14
5101 5612 1.438651 TCTGCACGTAAGCATTGTCC 58.561 50.000 0.55 0.00 44.68 4.02
5267 5778 0.914551 GACGTTCGGATCATGTGTCG 59.085 55.000 0.00 0.00 0.00 4.35
5268 5779 0.242825 ACGTTCGGATCATGTGTCGT 59.757 50.000 0.00 0.00 0.00 4.34
5269 5780 0.640262 CGTTCGGATCATGTGTCGTG 59.360 55.000 0.00 0.00 0.00 4.35
5270 5781 1.710013 GTTCGGATCATGTGTCGTGT 58.290 50.000 0.00 0.00 0.00 4.49
5271 5782 1.654105 GTTCGGATCATGTGTCGTGTC 59.346 52.381 0.00 0.00 0.00 3.67
5296 5807 2.037772 AGCTTCCGAGTTCTCATGTTGT 59.962 45.455 0.00 0.00 0.00 3.32
5351 5865 6.183360 GGTGTTTGTTTGTTGTGGTACAAATC 60.183 38.462 5.36 0.00 46.29 2.17
5360 5874 0.671163 TGGTACAAATCGTCGGCCAC 60.671 55.000 2.24 0.00 31.92 5.01
5382 5896 3.363970 CGGACTGATTGTGTTGTAAGCAC 60.364 47.826 0.00 0.00 37.37 4.40
5421 5935 7.805071 GTGCTATTGTTTGCTATGGTATGAATC 59.195 37.037 0.00 0.00 0.00 2.52
5553 6067 2.293677 CTACATGGAGTAGCACGCAA 57.706 50.000 0.00 0.00 43.40 4.85
5647 6166 3.951037 TGTTTGCATGGTGTAGAACAAGT 59.049 39.130 0.00 0.00 0.00 3.16
5668 6187 8.301720 ACAAGTGTTAGAGTTGTGTCGAATATA 58.698 33.333 1.65 0.00 45.02 0.86
5678 6197 7.823665 AGTTGTGTCGAATATAGTGTACAAGA 58.176 34.615 0.00 0.00 0.00 3.02
5693 6212 5.873164 GTGTACAAGATAGGTTACAGTTGGG 59.127 44.000 0.00 0.00 0.00 4.12
5729 6248 9.372369 GTATTGTGTTTAGATAGGATATGGAGC 57.628 37.037 0.00 0.00 0.00 4.70
5738 6257 0.318762 GGATATGGAGCCGTGTCCTC 59.681 60.000 15.08 0.00 39.29 3.71
5744 6263 1.748122 GAGCCGTGTCCTCGTAGGA 60.748 63.158 0.11 0.11 43.43 2.94
5755 6274 3.959293 TCCTCGTAGGACACTTGTATCA 58.041 45.455 0.11 0.00 40.06 2.15
5779 6298 2.158943 GGCCTCTCATATATAACGGGGC 60.159 54.545 10.25 10.25 36.70 5.80
5919 6438 2.445845 CATAGTCAGGCCCCGGGA 60.446 66.667 26.32 0.00 0.00 5.14
5933 6452 1.628340 CCCGGGAATGTAGCCATATCA 59.372 52.381 18.48 0.00 0.00 2.15
5937 6456 3.679389 GGGAATGTAGCCATATCAGTGG 58.321 50.000 0.00 0.00 42.35 4.00
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 1.544691 GATGCTCCGTCGTATGGGTAT 59.455 52.381 0.00 0.00 0.00 2.73
51 52 2.986728 AGGATAATCTTGGCGGGGTATT 59.013 45.455 0.00 0.00 0.00 1.89
71 72 7.120579 TGACATGGTAAAAGTGTATGGCTTAAG 59.879 37.037 0.00 0.00 0.00 1.85
122 123 2.363172 GGTCCAGCCCCTCTGTCTC 61.363 68.421 0.00 0.00 41.25 3.36
123 124 2.284995 GGTCCAGCCCCTCTGTCT 60.285 66.667 0.00 0.00 41.25 3.41
162 163 3.170717 GTGTTCCGAGGGGGATATATGA 58.829 50.000 0.00 0.00 46.62 2.15
177 178 5.758296 TGAGTTGAAGTGTCAATAGTGTTCC 59.242 40.000 0.00 0.00 45.38 3.62
312 313 7.425224 TTTCAATTTGGTTTTGAAGTCCCTA 57.575 32.000 0.00 0.00 42.31 3.53
325 326 5.163622 CCGATGTAGAGCATTTCAATTTGGT 60.164 40.000 0.00 0.00 38.06 3.67
578 599 5.064071 GGACAGAATAGAAGCAAGCAGTAAC 59.936 44.000 0.00 0.00 0.00 2.50
1141 1223 8.879759 TCAAGAAGTAATTAATCAATGACCGTC 58.120 33.333 0.00 0.00 0.00 4.79
1169 1251 5.712217 AAATTGTCGTGTGTATACCATCG 57.288 39.130 0.00 2.72 0.00 3.84
1397 1510 4.400567 AGTTGACCCGTGGTATTAGAGTAC 59.599 45.833 0.00 0.00 35.25 2.73
1719 1852 1.805869 CTCTTGTGCTCTCCCACTTG 58.194 55.000 0.00 0.00 36.68 3.16
2309 2445 2.291465 GCTTTGTCAATGTCTGTCAGCA 59.709 45.455 0.00 0.00 0.00 4.41
2538 2680 3.923563 GAGCTTGAGCACGCCGAGT 62.924 63.158 5.70 0.00 45.16 4.18
2623 2765 0.183492 AGGTCTTGGCAGTGCAGAAA 59.817 50.000 18.61 7.18 0.00 2.52
3137 3300 1.068250 GTGCCCGAGATGTCTAGCC 59.932 63.158 0.00 0.00 0.00 3.93
3141 3304 0.036952 CACTTGTGCCCGAGATGTCT 60.037 55.000 0.00 0.00 0.00 3.41
3407 3651 1.918957 ACCTAAGGAGCCTTGCATCTT 59.081 47.619 11.94 0.00 37.47 2.40
3900 4259 5.531287 GCCCGTGGAAACATTATAAGAGAAT 59.469 40.000 0.00 0.00 46.14 2.40
3907 4266 3.054287 TGGAAGCCCGTGGAAACATTATA 60.054 43.478 0.00 0.00 46.14 0.98
4023 4382 9.813446 AAGAATACCAGACTTATAAAGTAACCG 57.187 33.333 0.00 0.00 43.03 4.44
4034 4393 4.323485 CCAGGTGCAAGAATACCAGACTTA 60.323 45.833 0.00 0.00 39.46 2.24
4207 4569 0.804989 CGCCTCAGCTTCGGAAATTT 59.195 50.000 2.22 0.00 36.60 1.82
4271 4633 6.320518 TCGAGGTTAGGGGAATACATCTTAT 58.679 40.000 0.00 0.00 0.00 1.73
4393 4755 1.536676 CACCCCACTCCAGGTTGTT 59.463 57.895 0.00 0.00 32.72 2.83
4449 4817 2.288640 ACCCTTGTAGTACAACGAGTGC 60.289 50.000 11.75 0.00 33.96 4.40
4476 4844 2.675423 AGTACGCTGCGTCTGGGA 60.675 61.111 32.44 11.13 41.54 4.37
4994 5501 3.320823 TGTGCACGATCCACATGTT 57.679 47.368 13.13 0.00 38.21 2.71
5006 5513 4.560128 TCTTCAGTTCTGTAGATGTGCAC 58.440 43.478 10.75 10.75 0.00 4.57
5028 5535 1.959085 CAGCAACACGGCAGGAAAT 59.041 52.632 0.00 0.00 35.83 2.17
5050 5561 1.068083 CCAGTCGCATAGGACGCAT 59.932 57.895 0.00 0.00 41.81 4.73
5059 5570 2.236146 TCCACAGATAAACCAGTCGCAT 59.764 45.455 0.00 0.00 0.00 4.73
5062 5573 4.568359 CAGAATCCACAGATAAACCAGTCG 59.432 45.833 0.00 0.00 30.42 4.18
5101 5612 1.643292 CCAATATGGTGCAGACGCG 59.357 57.895 3.53 3.53 42.97 6.01
5129 5640 6.073440 CCAAATCAAATCAAACTGAAAGCTGG 60.073 38.462 0.00 0.00 37.60 4.85
5267 5778 1.996191 GAACTCGGAAGCTCATGACAC 59.004 52.381 0.00 0.00 0.00 3.67
5268 5779 1.895798 AGAACTCGGAAGCTCATGACA 59.104 47.619 0.00 0.00 0.00 3.58
5269 5780 2.094494 TGAGAACTCGGAAGCTCATGAC 60.094 50.000 0.00 0.00 32.85 3.06
5270 5781 2.171003 TGAGAACTCGGAAGCTCATGA 58.829 47.619 0.00 0.00 32.85 3.07
5271 5782 2.662006 TGAGAACTCGGAAGCTCATG 57.338 50.000 0.00 0.00 32.85 3.07
5296 5807 0.892358 ACAGAGGAGTACGACGGCAA 60.892 55.000 0.00 0.00 0.00 4.52
5360 5874 2.805671 TGCTTACAACACAATCAGTCCG 59.194 45.455 0.00 0.00 0.00 4.79
5382 5896 7.569226 GCAAACAATAGCACACCTTGTAATTTG 60.569 37.037 0.00 0.00 33.01 2.32
5400 5914 6.542005 TGTCGATTCATACCATAGCAAACAAT 59.458 34.615 0.00 0.00 0.00 2.71
5553 6067 4.161377 GCATAAACCTCTCCTCTGAGAAGT 59.839 45.833 6.17 0.00 46.75 3.01
5572 6091 1.076777 GGCAGGGCAGGAAAGCATA 60.077 57.895 0.00 0.00 35.83 3.14
5647 6166 7.823665 ACACTATATTCGACACAACTCTAACA 58.176 34.615 0.00 0.00 0.00 2.41
5668 6187 6.295688 CCCAACTGTAACCTATCTTGTACACT 60.296 42.308 0.00 0.00 0.00 3.55
5678 6197 4.534897 ACTACAAGCCCAACTGTAACCTAT 59.465 41.667 0.00 0.00 0.00 2.57
5738 6257 4.547532 GCCTATGATACAAGTGTCCTACG 58.452 47.826 0.00 0.00 0.00 3.51
5744 6263 4.290093 TGAGAGGCCTATGATACAAGTGT 58.710 43.478 3.53 0.00 0.00 3.55
5755 6274 5.148502 CCCCGTTATATATGAGAGGCCTAT 58.851 45.833 4.42 0.00 0.00 2.57
5773 6292 1.681327 ATCGTGTGTCTAGCCCCGT 60.681 57.895 0.00 0.00 0.00 5.28
5774 6293 1.226974 CATCGTGTGTCTAGCCCCG 60.227 63.158 0.00 0.00 0.00 5.73
5779 6298 4.976731 GCATAGGTTACATCGTGTGTCTAG 59.023 45.833 0.00 0.00 42.29 2.43
5839 6358 2.032528 CTGGACACCGGCACATGT 59.967 61.111 0.00 0.00 0.00 3.21
5869 6388 3.494223 CCCATGACACCGCTACAATATCA 60.494 47.826 0.00 0.00 0.00 2.15
5871 6390 2.224523 CCCCATGACACCGCTACAATAT 60.225 50.000 0.00 0.00 0.00 1.28
5919 6438 3.976654 AGGTCCACTGATATGGCTACATT 59.023 43.478 0.00 0.00 39.85 2.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.