AutoCloner

Multiple sequence alignment - TraesCS6B01G029400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS6B01G029400	chr6B	100.000	4309	0	0	1	4309	17730598	17726290	0.000000e+00	7958.0
1	TraesCS6B01G029400	chr6B	97.427	3498	65	3	1	3496	18014104	18017578	0.000000e+00	5938.0
2	TraesCS6B01G029400	chr6B	81.813	1886	307	20	1494	3362	17764465	17762599	0.000000e+00	1550.0
3	TraesCS6B01G029400	chr6B	81.140	1824	319	15	1457	3265	18266419	18268232	0.000000e+00	1439.0
4	TraesCS6B01G029400	chr6B	81.517	1780	279	18	1500	3266	18812735	18814477	0.000000e+00	1419.0
5	TraesCS6B01G029400	chr6B	97.048	813	24	0	3497	4309	18017528	18018340	0.000000e+00	1369.0
6	TraesCS6B01G029400	chr6B	79.227	1786	333	29	1504	3266	18225434	18227204	0.000000e+00	1208.0
7	TraesCS6B01G029400	chr6B	78.673	211	37	7	4106	4309	18633382	18633591	2.700000e-27	134.0
8	TraesCS6B01G029400	chr6B	86.957	92	11	1	3857	3947	18816634	18816725	7.620000e-18	102.0
9	TraesCS6B01G029400	chr6B	77.586	174	29	7	4087	4252	18399486	18399315	3.550000e-16	97.1
10	TraesCS6B01G029400	chr6B	100.000	51	0	0	3446	3496	17727102	17727052	1.280000e-15	95.3
11	TraesCS6B01G029400	chr6B	100.000	51	0	0	3497	3547	17727153	17727103	1.280000e-15	95.3
12	TraesCS6B01G029400	chr6B	89.655	58	4	1	3865	3922	18633194	18633249	5.980000e-09	73.1
13	TraesCS6B01G029400	chr6B	97.561	41	1	0	4107	4147	18431632	18431672	2.150000e-08	71.3
14	TraesCS6B01G029400	chr6D	94.921	2146	94	7	1364	3495	9852705	9850561	0.000000e+00	3345.0
15	TraesCS6B01G029400	chr6D	81.552	1946	310	32	1341	3265	10310694	10308777	0.000000e+00	1559.0
16	TraesCS6B01G029400	chr6D	80.051	1960	336	33	1341	3266	9912859	9914797	0.000000e+00	1402.0
17	TraesCS6B01G029400	chr6D	89.276	746	59	12	375	1101	9853486	9852743	0.000000e+00	915.0
18	TraesCS6B01G029400	chr6D	86.268	852	78	13	3497	4309	9850610	9849759	0.000000e+00	889.0
19	TraesCS6B01G029400	chr6A	94.271	1187	47	8	2330	3495	10931946	10930760	0.000000e+00	1796.0
20	TraesCS6B01G029400	chr6A	80.692	1937	315	37	1342	3260	11681427	11679532	0.000000e+00	1450.0
21	TraesCS6B01G029400	chr6A	80.974	1787	289	31	1490	3260	11732793	11731042	0.000000e+00	1369.0
22	TraesCS6B01G029400	chr6A	87.619	840	77	8	3497	4309	10930809	10929970	0.000000e+00	950.0
23	TraesCS6B01G029400	chr6A	79.645	1071	193	13	2203	3264	11475834	11476888	0.000000e+00	747.0
24	TraesCS6B01G029400	chr6A	96.354	384	13	1	1308	1691	10953384	10953002	7.860000e-177	630.0
25	TraesCS6B01G029400	chr6A	77.966	708	96	36	454	1127	11467543	11468224	5.230000e-104	388.0
26	TraesCS6B01G029400	chr6A	76.735	735	98	34	454	1134	11682196	11681481	4.130000e-90	342.0
27	TraesCS6B01G029400	chr6A	94.479	163	9	0	2172	2334	10937578	10937416	7.150000e-63	252.0
28	TraesCS6B01G029400	chr6A	84.393	173	20	3	966	1134	11747269	11747100	3.450000e-36	163.0
29	TraesCS6B01G029400	chr6A	95.238	42	2	0	4106	4147	11477656	11477697	2.780000e-07	67.6
30	TraesCS6B01G029400	chrUn	81.452	1143	185	17	1341	2477	240891706	240892827	0.000000e+00	911.0
31	TraesCS6B01G029400	chrUn	77.159	718	109	30	444	1132	300672933	300673624	2.450000e-97	366.0
32	TraesCS6B01G029400	chr2D	78.808	151	25	5	3119	3266	15516621	15516475	1.280000e-15	95.3

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS6B01G029400	chr6B	17726290	17730598	4308	True	2716.200000	7958	100.0000	1	4309	3	chr6B.!!$R3	4308
1	TraesCS6B01G029400	chr6B	18014104	18018340	4236	False	3653.500000	5938	97.2375	1	4309	2	chr6B.!!$F4	4308
2	TraesCS6B01G029400	chr6B	17762599	17764465	1866	True	1550.000000	1550	81.8130	1494	3362	1	chr6B.!!$R1	1868
3	TraesCS6B01G029400	chr6B	18266419	18268232	1813	False	1439.000000	1439	81.1400	1457	3265	1	chr6B.!!$F2	1808
4	TraesCS6B01G029400	chr6B	18225434	18227204	1770	False	1208.000000	1208	79.2270	1504	3266	1	chr6B.!!$F1	1762
5	TraesCS6B01G029400	chr6B	18812735	18816725	3990	False	760.500000	1419	84.2370	1500	3947	2	chr6B.!!$F6	2447
6	TraesCS6B01G029400	chr6D	9849759	9853486	3727	True	1716.333333	3345	90.1550	375	4309	3	chr6D.!!$R2	3934
7	TraesCS6B01G029400	chr6D	10308777	10310694	1917	True	1559.000000	1559	81.5520	1341	3265	1	chr6D.!!$R1	1924
8	TraesCS6B01G029400	chr6D	9912859	9914797	1938	False	1402.000000	1402	80.0510	1341	3266	1	chr6D.!!$F1	1925
9	TraesCS6B01G029400	chr6A	10929970	10931946	1976	True	1373.000000	1796	90.9450	2330	4309	2	chr6A.!!$R5	1979
10	TraesCS6B01G029400	chr6A	11731042	11732793	1751	True	1369.000000	1369	80.9740	1490	3260	1	chr6A.!!$R3	1770
11	TraesCS6B01G029400	chr6A	11679532	11682196	2664	True	896.000000	1450	78.7135	454	3260	2	chr6A.!!$R6	2806
12	TraesCS6B01G029400	chr6A	11475834	11477697	1863	False	407.300000	747	87.4415	2203	4147	2	chr6A.!!$F2	1944
13	TraesCS6B01G029400	chr6A	11467543	11468224	681	False	388.000000	388	77.9660	454	1127	1	chr6A.!!$F1	673
14	TraesCS6B01G029400	chrUn	240891706	240892827	1121	False	911.000000	911	81.4520	1341	2477	1	chrUn.!!$F1	1136
15	TraesCS6B01G029400	chrUn	300672933	300673624	691	False	366.000000	366	77.1590	444	1132	1	chrUn.!!$F2	688

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
726	744	0.390866	CAGCTAGCAGTGACACCTGG	60.391	60.0	18.83	0.0	32.92	4.45	F
2039	2158	0.685660	GGAGGTTTCGTCTTGACCCT	59.314	55.0	0.00	0.0	33.89	4.34	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2433	2558	2.296471	CGGTAGACCTTGACAAGTGAGT	59.704	50.0	14.03	4.98	0.00	3.41	R
3538	3741	0.109153	ACAAGAGTGTCTGCATGGCA	59.891	50.0	0.00	0.00	36.92	4.92	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
59	60	2.618053	GATACCCCGCCAAGATTATCG	58.382	52.381	0.00	0.00	0.00	2.92
86	87	4.700213	AGCCATACACTTTTACCATGTCAC	59.300	41.667	0.00	0.00	0.00	3.67
110	111	5.300792	CCAGCAAAGGTCCAACTTTACTTTA	59.699	40.000	0.00	0.00	38.56	1.85
111	112	6.206498	CAGCAAAGGTCCAACTTTACTTTAC	58.794	40.000	0.00	0.00	38.56	2.01
165	166	2.846206	GTGATGCCATATATCCCCCTCA	59.154	50.000	0.00	0.00	0.00	3.86
207	208	2.169352	CTCAACGGGTCAAGGATCTCAT	59.831	50.000	0.00	0.00	0.00	2.90
229	230	7.201145	TCATAATTTAGCGTAAGTCTGGACTC	58.799	38.462	3.60	0.00	41.58	3.36
247	248	1.372997	CGTGAGGTCACACTTCCCG	60.373	63.158	10.63	0.00	46.75	5.14
300	301	4.826183	AGAAGCATGCCAAGGAGATAAATC	59.174	41.667	15.66	0.00	0.00	2.17
308	309	4.745172	GCCAAGGAGATAAATCAGGGACTC	60.745	50.000	0.00	0.00	34.60	3.36
313	314	5.104318	AGGAGATAAATCAGGGACTCCAAAC	60.104	44.000	0.00	0.00	44.11	2.93
420	421	2.366590	AGACAGTGAACAGACAGCATCA	59.633	45.455	0.00	0.00	0.00	3.07
446	447	2.619931	TCAGAATCAGTCCCTGACCAA	58.380	47.619	0.00	0.00	43.63	3.67
447	448	2.303022	TCAGAATCAGTCCCTGACCAAC	59.697	50.000	0.00	0.00	43.63	3.77
726	744	0.390866	CAGCTAGCAGTGACACCTGG	60.391	60.000	18.83	0.00	32.92	4.45
820	842	3.117963	GTGACTAGCTCACCCTACTCCTA	60.118	52.174	11.99	0.00	43.35	2.94
885	909	6.006759	AGCTTTGTTGATTTGCTTCTACTC	57.993	37.500	0.00	0.00	0.00	2.59
935	974	8.335532	AGGAACTGATCGACAAATTAAAATGA	57.664	30.769	0.00	0.00	37.18	2.57
1015	1077	7.121611	TCCGATTCATTATGCGTATAGAGGTAA	59.878	37.037	0.00	0.00	0.00	2.85
1053	1115	4.647564	ATCACCTTTCATTCCACTCTGT	57.352	40.909	0.00	0.00	0.00	3.41
1141	1209	8.314751	TCTTTGGGTAAAATTTTGTTTGTCAGA	58.685	29.630	13.76	4.46	0.00	3.27
1160	1228	8.554835	TGTCAGAACGGTCATTGATTAATTAA	57.445	30.769	1.87	0.00	0.00	1.40
1368	1467	7.958025	GCATGCTCAGTTAGTAGAGTTAAAAAC	59.042	37.037	11.37	0.00	34.39	2.43
2039	2158	0.685660	GGAGGTTTCGTCTTGACCCT	59.314	55.000	0.00	0.00	33.89	4.34
2433	2558	3.689161	CGAGTCAACAATAATGCCTTCCA	59.311	43.478	0.00	0.00	0.00	3.53
3000	3164	2.432874	TCGGGAAATACCATCACACGAT	59.567	45.455	0.00	0.00	41.20	3.73
3216	3389	1.411651	GGATGCTACCTCACTCCCCC	61.412	65.000	0.00	0.00	0.00	5.40
3429	3629	1.480545	TCGCTTACAGATGCAAGGCTA	59.519	47.619	0.00	0.00	0.00	3.93
3476	3679	2.044123	AAATCCTTAAGAGGCTGCCG	57.956	50.000	13.96	0.00	43.21	5.69
3490	3693	1.734465	GCTGCCGTATTGATATCTGCC	59.266	52.381	3.98	0.00	0.00	4.85
3491	3694	2.871637	GCTGCCGTATTGATATCTGCCA	60.872	50.000	3.98	0.00	0.00	4.92
3492	3695	3.603532	CTGCCGTATTGATATCTGCCAT	58.396	45.455	3.98	0.00	0.00	4.40
3493	3696	3.337358	TGCCGTATTGATATCTGCCATG	58.663	45.455	3.98	0.00	0.00	3.66
3494	3697	2.096496	GCCGTATTGATATCTGCCATGC	59.904	50.000	3.98	0.00	0.00	4.06
3495	3698	3.337358	CCGTATTGATATCTGCCATGCA	58.663	45.455	3.98	0.00	36.92	3.96
3496	3699	3.125829	CCGTATTGATATCTGCCATGCAC	59.874	47.826	3.98	0.00	33.79	4.57
3497	3700	3.125829	CGTATTGATATCTGCCATGCACC	59.874	47.826	3.98	0.00	33.79	5.01
3498	3701	1.985473	TTGATATCTGCCATGCACCC	58.015	50.000	3.98	0.00	33.79	4.61
3499	3702	0.250424	TGATATCTGCCATGCACCCG	60.250	55.000	3.98	0.00	33.79	5.28
3500	3703	1.580845	GATATCTGCCATGCACCCGC	61.581	60.000	0.00	0.00	33.79	6.13
3501	3704	3.772853	TATCTGCCATGCACCCGCC	62.773	63.158	0.00	0.00	37.32	6.13
3506	3709	2.510411	CCATGCACCCGCCAGATA	59.490	61.111	0.00	0.00	37.32	1.98
3507	3710	1.073722	CCATGCACCCGCCAGATAT	59.926	57.895	0.00	0.00	37.32	1.63
3508	3711	0.324614	CCATGCACCCGCCAGATATA	59.675	55.000	0.00	0.00	37.32	0.86
3509	3712	1.271325	CCATGCACCCGCCAGATATAA	60.271	52.381	0.00	0.00	37.32	0.98
3510	3713	2.503331	CATGCACCCGCCAGATATAAA	58.497	47.619	0.00	0.00	37.32	1.40
3511	3714	2.949177	TGCACCCGCCAGATATAAAT	57.051	45.000	0.00	0.00	37.32	1.40
3512	3715	2.778299	TGCACCCGCCAGATATAAATC	58.222	47.619	0.00	0.00	37.32	2.17
3513	3716	2.084546	GCACCCGCCAGATATAAATCC	58.915	52.381	0.00	0.00	31.98	3.01
3514	3717	2.290323	GCACCCGCCAGATATAAATCCT	60.290	50.000	0.00	0.00	31.98	3.24
3515	3718	3.810743	GCACCCGCCAGATATAAATCCTT	60.811	47.826	0.00	0.00	31.98	3.36
3516	3719	4.564821	GCACCCGCCAGATATAAATCCTTA	60.565	45.833	0.00	0.00	31.98	2.69
3517	3720	5.556915	CACCCGCCAGATATAAATCCTTAA	58.443	41.667	0.00	0.00	31.98	1.85
3518	3721	5.643777	CACCCGCCAGATATAAATCCTTAAG	59.356	44.000	0.00	0.00	31.98	1.85
3519	3722	5.546499	ACCCGCCAGATATAAATCCTTAAGA	59.454	40.000	3.36	0.00	31.98	2.10
3520	3723	6.109359	CCCGCCAGATATAAATCCTTAAGAG	58.891	44.000	3.36	0.00	31.98	2.85
3521	3724	6.109359	CCGCCAGATATAAATCCTTAAGAGG	58.891	44.000	3.36	0.00	45.02	3.69
3522	3725	5.582665	CGCCAGATATAAATCCTTAAGAGGC	59.417	44.000	3.36	0.00	43.21	4.70
3523	3726	6.575254	CGCCAGATATAAATCCTTAAGAGGCT	60.575	42.308	3.36	0.00	43.21	4.58
3524	3727	6.597280	GCCAGATATAAATCCTTAAGAGGCTG	59.403	42.308	3.36	0.00	43.21	4.85
3525	3728	6.597280	CCAGATATAAATCCTTAAGAGGCTGC	59.403	42.308	3.36	0.00	43.21	5.25
3526	3729	6.597280	CAGATATAAATCCTTAAGAGGCTGCC	59.403	42.308	11.65	11.65	43.21	4.85
3527	3730	2.044123	AAATCCTTAAGAGGCTGCCG	57.956	50.000	13.96	0.00	43.21	5.69
3528	3731	0.912486	AATCCTTAAGAGGCTGCCGT	59.088	50.000	13.96	5.40	43.21	5.68
3529	3732	1.789523	ATCCTTAAGAGGCTGCCGTA	58.210	50.000	13.96	4.35	43.21	4.02
3530	3733	1.789523	TCCTTAAGAGGCTGCCGTAT	58.210	50.000	13.96	5.71	43.21	3.06
3531	3734	2.116238	TCCTTAAGAGGCTGCCGTATT	58.884	47.619	13.96	11.70	43.21	1.89
3532	3735	2.158957	TCCTTAAGAGGCTGCCGTATTG	60.159	50.000	13.96	3.51	43.21	1.90
3533	3736	2.158957	CCTTAAGAGGCTGCCGTATTGA	60.159	50.000	13.96	5.55	35.94	2.57
3534	3737	3.495100	CCTTAAGAGGCTGCCGTATTGAT	60.495	47.826	13.96	0.00	35.94	2.57
3535	3738	4.262463	CCTTAAGAGGCTGCCGTATTGATA	60.262	45.833	13.96	0.00	35.94	2.15
3536	3739	5.482908	CTTAAGAGGCTGCCGTATTGATAT	58.517	41.667	13.96	0.00	0.00	1.63
3537	3740	3.601443	AGAGGCTGCCGTATTGATATC	57.399	47.619	13.96	1.63	0.00	1.63
3538	3741	3.169099	AGAGGCTGCCGTATTGATATCT	58.831	45.455	13.96	4.20	0.00	1.98
3539	3742	3.056250	AGAGGCTGCCGTATTGATATCTG	60.056	47.826	13.96	0.00	0.00	2.90
3540	3743	1.734465	GGCTGCCGTATTGATATCTGC	59.266	52.381	1.35	0.00	0.00	4.26
3962	5804	1.665679	CATGGTGCATCAAGGTACGTC	59.334	52.381	2.42	0.00	0.00	4.34
4063	5905	0.604780	CTGGGACTGGACAACTGCAG	60.605	60.000	13.48	13.48	41.56	4.41
4077	5919	6.238374	GGACAACTGCAGCAACGTATATTAAT	60.238	38.462	15.27	0.00	0.00	1.40
4085	5927	6.420903	GCAGCAACGTATATTAATCACTCTGA	59.579	38.462	0.00	0.00	0.00	3.27
4160	6002	3.414700	GCTCGTCTTGGCCACACG	61.415	66.667	24.57	24.57	34.78	4.49
4218	6060	0.322648	TGCACTGTGGTGATCTCAGG	59.677	55.000	10.21	0.00	45.61	3.86

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
9	10	2.126189	GCTCCGTCGTGTGGGTAC	60.126	66.667	0.00	0.00	0.00	3.34
16	17	0.670546	ACAAAGGATGCTCCGTCGTG	60.671	55.000	0.00	0.00	42.75	4.35
39	40	2.028385	ACGATAATCTTGGCGGGGTATC	60.028	50.000	0.00	0.00	0.00	2.24
59	60	7.094549	TGACATGGTAAAAGTGTATGGCTTAAC	60.095	37.037	0.00	0.00	0.00	2.01
86	87	3.222603	AGTAAAGTTGGACCTTTGCTGG	58.777	45.455	3.92	0.00	43.07	4.85
110	111	2.997897	GTCCAGCCCCTCTGTCGT	60.998	66.667	0.00	0.00	41.25	4.34
111	112	3.775654	GGTCCAGCCCCTCTGTCG	61.776	72.222	0.00	0.00	41.25	4.35
150	151	4.171234	AGTGTTCTGAGGGGGATATATGG	58.829	47.826	0.00	0.00	0.00	2.74
165	166	6.582636	TGAGTTGAAGTGTCAATAGTGTTCT	58.417	36.000	0.00	0.00	45.38	3.01
207	208	5.124457	ACGAGTCCAGACTTACGCTAAATTA	59.876	40.000	1.08	0.00	42.66	1.40
247	248	1.439644	CCCCTAGAGCGACTTGAGC	59.560	63.158	0.00	0.00	0.00	4.26
300	301	2.299867	CAATTTGGGTTTGGAGTCCCTG	59.700	50.000	6.74	0.00	43.74	4.45
308	309	4.644498	AGAGCATTTCAATTTGGGTTTGG	58.356	39.130	0.00	0.00	0.00	3.28
313	314	5.276270	CGATGTAGAGCATTTCAATTTGGG	58.724	41.667	0.00	0.00	38.06	4.12
420	421	2.761809	AGGGACTGATTCTGATGCTCT	58.238	47.619	0.00	0.00	37.18	4.09
726	744	5.279384	TCGATAAAAGCCAAGTAGATCGTC	58.721	41.667	0.00	0.00	36.84	4.20
903	927	2.890945	TGTCGATCAGTTCCTGACTTCA	59.109	45.455	0.00	0.00	43.63	3.02
1015	1077	6.655078	AGGTGATTTTTGTAAGTGCAGAAT	57.345	33.333	0.00	0.00	0.00	2.40
1160	1228	7.224753	GTCGTGTGTATACCATCATTCAAGAAT	59.775	37.037	0.00	0.00	0.00	2.40
1169	1237	7.766738	ACATAAATTGTCGTGTGTATACCATCA	59.233	33.333	0.00	0.00	30.89	3.07
1368	1467	4.978186	CATTCTCATGCACAACTAACTGG	58.022	43.478	0.00	0.00	0.00	4.00
1455	1558	9.342308	TGAGAATCAGTCAAAACTTCAAACTAT	57.658	29.630	0.00	0.00	42.56	2.12
1495	1598	2.223112	GCTTTGATATCCTGCGTGTGTG	60.223	50.000	0.00	0.00	0.00	3.82
2433	2558	2.296471	CGGTAGACCTTGACAAGTGAGT	59.704	50.000	14.03	4.98	0.00	3.41
3000	3164	3.538591	CTCCAGATAAGCTTGTCATGCA	58.461	45.455	23.17	6.15	0.00	3.96
3216	3389	2.548904	GCAGCCTAGCAAGATGATTCTG	59.451	50.000	0.00	0.00	30.72	3.02
3429	3629	2.169978	GGCGGGATAAAGTGACCTAAGT	59.830	50.000	0.00	0.00	0.00	2.24
3476	3679	3.441572	GGGTGCATGGCAGATATCAATAC	59.558	47.826	5.32	0.00	40.08	1.89
3490	3693	2.183478	TTATATCTGGCGGGTGCATG	57.817	50.000	0.00	0.00	45.35	4.06
3491	3694	2.949177	TTTATATCTGGCGGGTGCAT	57.051	45.000	0.00	0.00	45.35	3.96
3492	3695	2.552155	GGATTTATATCTGGCGGGTGCA	60.552	50.000	0.00	0.00	45.35	4.57
3493	3696	2.084546	GGATTTATATCTGGCGGGTGC	58.915	52.381	0.00	0.00	41.71	5.01
3494	3697	3.703001	AGGATTTATATCTGGCGGGTG	57.297	47.619	0.00	0.00	0.00	4.61
3495	3698	5.546499	TCTTAAGGATTTATATCTGGCGGGT	59.454	40.000	1.85	0.00	0.00	5.28
3496	3699	6.049955	TCTTAAGGATTTATATCTGGCGGG	57.950	41.667	1.85	0.00	0.00	6.13
3497	3700	6.109359	CCTCTTAAGGATTTATATCTGGCGG	58.891	44.000	1.85	0.00	46.67	6.13
3498	3701	5.582665	GCCTCTTAAGGATTTATATCTGGCG	59.417	44.000	1.85	0.00	46.67	5.69
3499	3702	6.597280	CAGCCTCTTAAGGATTTATATCTGGC	59.403	42.308	1.85	0.00	46.67	4.85
3500	3703	6.597280	GCAGCCTCTTAAGGATTTATATCTGG	59.403	42.308	1.85	0.00	46.67	3.86
3501	3704	6.597280	GGCAGCCTCTTAAGGATTTATATCTG	59.403	42.308	3.29	0.00	46.67	2.90
3502	3705	6.575254	CGGCAGCCTCTTAAGGATTTATATCT	60.575	42.308	10.54	0.00	46.67	1.98
3503	3706	5.582665	CGGCAGCCTCTTAAGGATTTATATC	59.417	44.000	10.54	0.00	46.67	1.63
3504	3707	5.013183	ACGGCAGCCTCTTAAGGATTTATAT	59.987	40.000	10.54	0.00	46.67	0.86
3505	3708	4.347000	ACGGCAGCCTCTTAAGGATTTATA	59.653	41.667	10.54	0.00	46.67	0.98
3506	3709	3.136626	ACGGCAGCCTCTTAAGGATTTAT	59.863	43.478	10.54	0.00	46.67	1.40
3507	3710	2.504175	ACGGCAGCCTCTTAAGGATTTA	59.496	45.455	10.54	0.00	46.67	1.40
3508	3711	1.282157	ACGGCAGCCTCTTAAGGATTT	59.718	47.619	10.54	0.00	46.67	2.17
3509	3712	0.912486	ACGGCAGCCTCTTAAGGATT	59.088	50.000	10.54	0.00	46.67	3.01
3510	3713	1.789523	TACGGCAGCCTCTTAAGGAT	58.210	50.000	10.54	0.00	46.67	3.24
3511	3714	1.789523	ATACGGCAGCCTCTTAAGGA	58.210	50.000	10.54	0.00	46.67	3.36
3512	3715	2.158957	TCAATACGGCAGCCTCTTAAGG	60.159	50.000	10.54	0.00	46.44	2.69
3513	3716	3.179443	TCAATACGGCAGCCTCTTAAG	57.821	47.619	10.54	0.00	0.00	1.85
3514	3717	3.838244	ATCAATACGGCAGCCTCTTAA	57.162	42.857	10.54	0.00	0.00	1.85
3515	3718	4.772624	AGATATCAATACGGCAGCCTCTTA	59.227	41.667	10.54	0.00	0.00	2.10
3516	3719	3.580458	AGATATCAATACGGCAGCCTCTT	59.420	43.478	10.54	0.00	0.00	2.85
3517	3720	3.056250	CAGATATCAATACGGCAGCCTCT	60.056	47.826	10.54	0.00	0.00	3.69
3518	3721	3.257393	CAGATATCAATACGGCAGCCTC	58.743	50.000	10.54	0.00	0.00	4.70
3519	3722	2.613977	GCAGATATCAATACGGCAGCCT	60.614	50.000	10.54	0.00	0.00	4.58
3520	3723	1.734465	GCAGATATCAATACGGCAGCC	59.266	52.381	0.00	0.00	0.00	4.85
3521	3724	1.734465	GGCAGATATCAATACGGCAGC	59.266	52.381	5.32	0.00	0.00	5.25
3522	3725	3.044235	TGGCAGATATCAATACGGCAG	57.956	47.619	5.32	0.00	0.00	4.85
3523	3726	3.337358	CATGGCAGATATCAATACGGCA	58.663	45.455	5.32	6.65	0.00	5.69
3524	3727	2.096496	GCATGGCAGATATCAATACGGC	59.904	50.000	5.32	1.15	0.00	5.68
3525	3728	3.337358	TGCATGGCAGATATCAATACGG	58.663	45.455	5.32	0.00	33.32	4.02
3538	3741	0.109153	ACAAGAGTGTCTGCATGGCA	59.891	50.000	0.00	0.00	36.92	4.92
3539	3742	1.068748	CAACAAGAGTGTCTGCATGGC	60.069	52.381	0.00	0.00	36.80	4.40
3540	3743	1.538512	CCAACAAGAGTGTCTGCATGG	59.461	52.381	0.00	0.00	36.80	3.66
4099	5941	2.357154	GGTCCAGGTGCAAGAATACCAT	60.357	50.000	0.00	0.00	39.46	3.55
4183	6025	3.055530	CAGTGCACTATCTCAAGGGTCTT	60.056	47.826	21.20	0.00	0.00	3.01

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.