AutoCloner

Multiple sequence alignment - TraesCS6B01G029200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS6B01G029200	chr6B	100.000	2909	0	0	1	2909	17532809	17535717	0.000000e+00	5373.0
1	TraesCS6B01G029200	chr6B	93.629	2747	139	15	169	2908	17704905	17702188	0.000000e+00	4071.0
2	TraesCS6B01G029200	chr6B	95.067	1500	70	2	741	2236	17685747	17687246	0.000000e+00	2357.0
3	TraesCS6B01G029200	chr6B	87.360	625	46	12	2291	2908	17687073	17687671	0.000000e+00	686.0
4	TraesCS6B01G029200	chr6B	77.778	504	101	9	1120	1617	17686326	17686824	1.690000e-77	300.0
5	TraesCS6B01G029200	chr6B	87.124	233	21	6	2040	2266	17702822	17702593	3.720000e-64	255.0
6	TraesCS6B01G029200	chr6B	86.957	230	21	6	2261	2487	17534848	17535071	1.730000e-62	250.0
7	TraesCS6B01G029200	chr6B	81.356	236	38	5	1582	1814	17703898	17703666	1.380000e-43	187.0
8	TraesCS6B01G029200	chr6D	92.975	2306	108	15	25	2297	9792505	9794789	0.000000e+00	3312.0
9	TraesCS6B01G029200	chr6D	93.124	2167	109	9	150	2297	9587057	9589202	0.000000e+00	3140.0
10	TraesCS6B01G029200	chr6D	87.983	233	18	5	2259	2487	9794529	9794755	1.720000e-67	267.0
11	TraesCS6B01G029200	chr6D	87.554	233	19	5	2259	2487	9588942	9589168	8.000000e-66	261.0
12	TraesCS6B01G029200	chr6D	97.727	132	3	0	25	156	9586903	9587034	8.110000e-56	228.0
13	TraesCS6B01G029200	chr6D	94.355	124	6	1	2786	2908	9795457	9795580	3.830000e-44	189.0
14	TraesCS6B01G029200	chr6D	97.468	79	2	0	2786	2864	9589867	9589945	5.060000e-28	135.0
15	TraesCS6B01G029200	chr6D	100.000	29	0	0	2231	2259	9589218	9589246	1.000000e-03	54.7
16	TraesCS6B01G029200	chr6A	91.981	2307	130	24	25	2297	10600158	10602443	0.000000e+00	3184.0
17	TraesCS6B01G029200	chr6A	92.797	2152	127	10	153	2297	10516618	10518748	0.000000e+00	3090.0
18	TraesCS6B01G029200	chr6A	92.644	2148	126	9	154	2297	10917764	10919883	0.000000e+00	3062.0
19	TraesCS6B01G029200	chr6A	92.526	2154	134	9	150	2297	10559177	10561309	0.000000e+00	3061.0
20	TraesCS6B01G029200	chr6A	87.607	234	18	6	2259	2487	10518487	10518714	8.000000e-66	261.0
21	TraesCS6B01G029200	chr6A	87.124	233	19	6	2260	2487	10602183	10602409	1.340000e-63	254.0
22	TraesCS6B01G029200	chr6A	86.266	233	21	8	2259	2487	10919624	10919849	2.900000e-60	243.0
23	TraesCS6B01G029200	chr6A	96.947	131	4	0	26	156	10516462	10516592	1.360000e-53	220.0
24	TraesCS6B01G029200	chr6A	96.183	131	5	0	26	156	10559024	10559154	6.310000e-52	215.0
25	TraesCS6B01G029200	chr6A	94.697	132	7	0	25	156	10917606	10917737	3.800000e-49	206.0
26	TraesCS6B01G029200	chr6A	99.057	106	1	0	2803	2908	10920580	10920685	1.060000e-44	191.0
27	TraesCS6B01G029200	chr6A	97.468	79	2	0	2786	2864	10610183	10610261	5.060000e-28	135.0
28	TraesCS6B01G029200	chr6A	96.203	79	3	0	2786	2864	10519414	10519492	2.350000e-26	130.0
29	TraesCS6B01G029200	chr6A	96.203	79	3	0	2786	2864	10561977	10562055	2.350000e-26	130.0
30	TraesCS6B01G029200	chr6A	98.000	50	1	0	2860	2909	10911919	10911968	1.440000e-13	87.9

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS6B01G029200	chr6B	17532809	17535717	2908	False	2811.500000	5373	93.478500	1	2909	2	chr6B.!!$F1	2908
1	TraesCS6B01G029200	chr6B	17702188	17704905	2717	True	1504.333333	4071	87.369667	169	2908	3	chr6B.!!$R1	2739
2	TraesCS6B01G029200	chr6B	17685747	17687671	1924	False	1114.333333	2357	86.735000	741	2908	3	chr6B.!!$F2	2167
3	TraesCS6B01G029200	chr6D	9792505	9795580	3075	False	1256.000000	3312	91.771000	25	2908	3	chr6D.!!$F2	2883
4	TraesCS6B01G029200	chr6D	9586903	9589945	3042	False	763.740000	3140	95.174600	25	2864	5	chr6D.!!$F1	2839
5	TraesCS6B01G029200	chr6A	10600158	10602443	2285	False	1719.000000	3184	89.552500	25	2487	2	chr6A.!!$F5	2462
6	TraesCS6B01G029200	chr6A	10559024	10562055	3031	False	1135.333333	3061	94.970667	26	2864	3	chr6A.!!$F4	2838
7	TraesCS6B01G029200	chr6A	10917606	10920685	3079	False	925.500000	3062	93.166000	25	2908	4	chr6A.!!$F6	2883
8	TraesCS6B01G029200	chr6A	10516462	10519492	3030	False	925.250000	3090	93.388500	26	2864	4	chr6A.!!$F3	2838

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
381	413	0.950836	CGTGCTTCATCACCAACCAA	59.049	50.0	0.0	0.0	33.57	3.67	F
1549	1587	0.322975	AGCCACCACTGACTTAGCAG	59.677	55.0	0.0	0.0	41.63	4.24	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1554	1592	0.603707	TCTTACCAGCAGCAGTGTGC	60.604	55.0	8.97	8.97	45.46	4.57	R
2752	3162	0.301687	CAATCATCGAAAGGACGGCG	59.698	55.0	4.80	4.80	0.00	6.46	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
19	20	2.203470	TGTTCATTGCTGCATGGAGA	57.797	45.000	19.59	0.00	0.00	3.71
20	21	2.730382	TGTTCATTGCTGCATGGAGAT	58.270	42.857	19.59	0.00	0.00	2.75
21	22	3.093814	TGTTCATTGCTGCATGGAGATT	58.906	40.909	19.59	0.00	0.00	2.40
22	23	3.129813	TGTTCATTGCTGCATGGAGATTC	59.870	43.478	19.59	0.51	0.00	2.52
23	24	1.944709	TCATTGCTGCATGGAGATTCG	59.055	47.619	19.59	3.18	0.00	3.34
164	194	6.604795	CCATCTTGGTTGGATTCATCTAAGTT	59.395	38.462	7.76	0.00	36.26	2.66
166	196	5.945784	TCTTGGTTGGATTCATCTAAGTTGG	59.054	40.000	7.76	0.00	34.68	3.77
167	197	5.512942	TGGTTGGATTCATCTAAGTTGGA	57.487	39.130	0.00	0.00	0.00	3.53
199	230	2.573869	CCGTGGCGTGAGTCTGAT	59.426	61.111	0.00	0.00	36.07	2.90
381	413	0.950836	CGTGCTTCATCACCAACCAA	59.049	50.000	0.00	0.00	33.57	3.67
544	576	1.078778	AATGCACCGCACGGATACA	60.079	52.632	17.40	10.68	43.04	2.29
630	662	1.278699	AGTACGACGAGAAGGACCTCT	59.721	52.381	0.00	0.00	0.00	3.69
652	684	2.743928	CTGGGCTGGAAGTCACGC	60.744	66.667	0.00	0.00	43.51	5.34
948	986	5.282055	TCACCTCTATGAATCATGTGTCC	57.718	43.478	5.91	0.00	0.00	4.02
1210	1248	3.672293	CTGAAAGCGCCACCACAT	58.328	55.556	2.29	0.00	0.00	3.21
1359	1397	1.515081	GTACTTTAGCCGCCACACAA	58.485	50.000	0.00	0.00	0.00	3.33
1537	1575	2.291540	CCCAATAGGAAAGAAGCCACCA	60.292	50.000	0.00	0.00	38.24	4.17
1538	1576	2.755103	CCAATAGGAAAGAAGCCACCAC	59.245	50.000	0.00	0.00	36.89	4.16
1539	1577	3.562176	CCAATAGGAAAGAAGCCACCACT	60.562	47.826	0.00	0.00	36.89	4.00
1540	1578	2.859165	TAGGAAAGAAGCCACCACTG	57.141	50.000	0.00	0.00	0.00	3.66
1541	1579	1.140312	AGGAAAGAAGCCACCACTGA	58.860	50.000	0.00	0.00	0.00	3.41
1542	1580	1.202818	AGGAAAGAAGCCACCACTGAC	60.203	52.381	0.00	0.00	0.00	3.51
1543	1581	1.202818	GGAAAGAAGCCACCACTGACT	60.203	52.381	0.00	0.00	0.00	3.41
1544	1582	2.576615	GAAAGAAGCCACCACTGACTT	58.423	47.619	0.00	0.00	0.00	3.01
1545	1583	3.496160	GGAAAGAAGCCACCACTGACTTA	60.496	47.826	0.00	0.00	0.00	2.24
1546	1584	3.409026	AAGAAGCCACCACTGACTTAG	57.591	47.619	0.00	0.00	0.00	2.18
1547	1585	1.002544	AGAAGCCACCACTGACTTAGC	59.997	52.381	0.00	0.00	0.00	3.09
1548	1586	0.764890	AAGCCACCACTGACTTAGCA	59.235	50.000	0.00	0.00	0.00	3.49
1549	1587	0.322975	AGCCACCACTGACTTAGCAG	59.677	55.000	0.00	0.00	41.63	4.24
1550	1588	1.301677	GCCACCACTGACTTAGCAGC	61.302	60.000	0.00	0.00	39.51	5.25
1551	1589	0.322975	CCACCACTGACTTAGCAGCT	59.677	55.000	0.00	0.00	39.51	4.24
1552	1590	1.550524	CCACCACTGACTTAGCAGCTA	59.449	52.381	0.00	0.00	39.51	3.32
1553	1591	2.169352	CCACCACTGACTTAGCAGCTAT	59.831	50.000	2.02	0.00	39.51	2.97
1554	1592	3.193263	CACCACTGACTTAGCAGCTATG	58.807	50.000	12.72	12.72	39.51	2.23
1650	1724	0.248843	GAGCTGCAGCCAAGTCTACT	59.751	55.000	34.39	13.33	43.38	2.57
2027	2101	4.550422	TGCATGCACGCTTTGTTTAAATA	58.450	34.783	18.46	0.00	0.00	1.40
2079	2153	9.434559	GTCTTGCTTGTTTTACTTTTAGTAGTG	57.565	33.333	0.00	0.00	31.47	2.74
2103	2178	4.275936	AGACACGCTTGACTTGCTTTAAAT	59.724	37.500	0.00	0.00	0.00	1.40
2196	2272	6.610741	TTTTTGTCATAATTTGGGTGCAAC	57.389	33.333	0.00	0.00	0.00	4.17
2279	2355	6.482835	CGGCGAATCATGTTTTAATGTCTTA	58.517	36.000	0.00	0.00	0.00	2.10
2362	2438	9.859692	CAATGATCGATGTATACATGCATTATC	57.140	33.333	22.93	15.83	36.57	1.75
2539	2619	5.140747	AGAACTTCAGCTTTCGTCATACT	57.859	39.130	0.00	0.00	0.00	2.12
2546	2626	1.324736	GCTTTCGTCATACTTCTGCCG	59.675	52.381	0.00	0.00	0.00	5.69
2641	2736	6.428771	CGATTCTACCTAAAAACCACCTCAAA	59.571	38.462	0.00	0.00	0.00	2.69
2648	2743	3.708563	AAAACCACCTCAAATGTCACG	57.291	42.857	0.00	0.00	0.00	4.35
2707	3117	0.247854	GCTCGGCGCTTCAGATTTTC	60.248	55.000	7.64	0.00	35.14	2.29
2708	3118	1.078709	CTCGGCGCTTCAGATTTTCA	58.921	50.000	7.64	0.00	0.00	2.69
2709	3119	1.061711	CTCGGCGCTTCAGATTTTCAG	59.938	52.381	7.64	0.00	0.00	3.02
2710	3120	0.522076	CGGCGCTTCAGATTTTCAGC	60.522	55.000	7.64	0.00	0.00	4.26
2711	3121	0.807496	GGCGCTTCAGATTTTCAGCT	59.193	50.000	7.64	0.00	0.00	4.24
2712	3122	1.200948	GGCGCTTCAGATTTTCAGCTT	59.799	47.619	7.64	0.00	0.00	3.74
2713	3123	2.513893	GCGCTTCAGATTTTCAGCTTC	58.486	47.619	0.00	0.00	0.00	3.86
2714	3124	2.095567	GCGCTTCAGATTTTCAGCTTCA	60.096	45.455	0.00	0.00	0.00	3.02
2715	3125	3.744987	CGCTTCAGATTTTCAGCTTCAG	58.255	45.455	0.00	0.00	0.00	3.02
2716	3126	3.434641	CGCTTCAGATTTTCAGCTTCAGA	59.565	43.478	0.00	0.00	0.00	3.27
2717	3127	4.094590	CGCTTCAGATTTTCAGCTTCAGAT	59.905	41.667	0.00	0.00	0.00	2.90
2718	3128	5.391736	CGCTTCAGATTTTCAGCTTCAGATT	60.392	40.000	0.00	0.00	0.00	2.40
2719	3129	6.388278	GCTTCAGATTTTCAGCTTCAGATTT	58.612	36.000	0.00	0.00	0.00	2.17
2720	3130	7.533426	GCTTCAGATTTTCAGCTTCAGATTTA	58.467	34.615	0.00	0.00	0.00	1.40
2721	3131	8.189460	GCTTCAGATTTTCAGCTTCAGATTTAT	58.811	33.333	0.00	0.00	0.00	1.40
2734	3144	6.183360	GCTTCAGATTTATTCCAGCAACTGAT	60.183	38.462	0.00	0.00	34.07	2.90
2752	3162	6.506500	ACTGATTGTCAAATTGAGTCATCC	57.493	37.500	0.00	0.00	0.00	3.51
2891	3329	5.940192	TGTCAACTCCATGTACAATCAAC	57.060	39.130	0.00	0.00	0.00	3.18
2908	3346	5.902613	ATCAACCAATCACAAATCACGAT	57.097	34.783	0.00	0.00	0.00	3.73

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
0	1	2.203470	TCTCCATGCAGCAATGAACA	57.797	45.000	0.00	0.00	0.00	3.18
1	2	3.703420	GAATCTCCATGCAGCAATGAAC	58.297	45.455	0.00	0.00	0.00	3.18
2	3	2.356695	CGAATCTCCATGCAGCAATGAA	59.643	45.455	0.00	0.00	0.00	2.57
3	4	1.944709	CGAATCTCCATGCAGCAATGA	59.055	47.619	0.00	0.00	0.00	2.57
4	5	1.001706	CCGAATCTCCATGCAGCAATG	60.002	52.381	0.00	0.00	0.00	2.82
5	6	1.315690	CCGAATCTCCATGCAGCAAT	58.684	50.000	0.00	0.00	0.00	3.56
6	7	0.749091	CCCGAATCTCCATGCAGCAA	60.749	55.000	0.00	0.00	0.00	3.91
7	8	1.153107	CCCGAATCTCCATGCAGCA	60.153	57.895	0.00	0.00	0.00	4.41
8	9	2.550101	GCCCGAATCTCCATGCAGC	61.550	63.158	0.00	0.00	0.00	5.25
9	10	0.536687	ATGCCCGAATCTCCATGCAG	60.537	55.000	0.00	0.00	31.53	4.41
10	11	0.106569	AATGCCCGAATCTCCATGCA	60.107	50.000	0.00	0.00	0.00	3.96
11	12	0.313043	CAATGCCCGAATCTCCATGC	59.687	55.000	0.00	0.00	0.00	4.06
12	13	0.313043	GCAATGCCCGAATCTCCATG	59.687	55.000	0.00	0.00	0.00	3.66
13	14	0.184451	AGCAATGCCCGAATCTCCAT	59.816	50.000	0.00	0.00	0.00	3.41
14	15	0.836606	TAGCAATGCCCGAATCTCCA	59.163	50.000	0.00	0.00	0.00	3.86
15	16	1.517242	CTAGCAATGCCCGAATCTCC	58.483	55.000	0.00	0.00	0.00	3.71
16	17	1.517242	CCTAGCAATGCCCGAATCTC	58.483	55.000	0.00	0.00	0.00	2.75
17	18	0.109342	CCCTAGCAATGCCCGAATCT	59.891	55.000	0.00	0.00	0.00	2.40
18	19	1.518903	GCCCTAGCAATGCCCGAATC	61.519	60.000	0.00	0.00	39.53	2.52
19	20	1.529244	GCCCTAGCAATGCCCGAAT	60.529	57.895	0.00	0.00	39.53	3.34
20	21	2.124320	GCCCTAGCAATGCCCGAA	60.124	61.111	0.00	0.00	39.53	4.30
21	22	4.545706	CGCCCTAGCAATGCCCGA	62.546	66.667	0.00	0.00	39.83	5.14
22	23	4.856801	ACGCCCTAGCAATGCCCG	62.857	66.667	0.00	0.00	39.83	6.13
23	24	3.211963	CACGCCCTAGCAATGCCC	61.212	66.667	0.00	0.00	39.83	5.36
164	194	2.661399	GCAGCAGAGTGAGCTCCA	59.339	61.111	12.15	0.00	41.14	3.86
166	196	2.125188	GGGCAGCAGAGTGAGCTC	60.125	66.667	6.82	6.82	41.14	4.09
167	197	4.079850	CGGGCAGCAGAGTGAGCT	62.080	66.667	0.00	0.00	44.62	4.09
195	226	5.464722	CCATGACTCGGATTCAAAGTATCAG	59.535	44.000	1.98	0.00	0.00	2.90
199	230	3.531538	GCCATGACTCGGATTCAAAGTA	58.468	45.455	1.98	0.00	0.00	2.24
381	413	1.414181	CCATGACGGCTTAGGATGACT	59.586	52.381	0.00	0.00	0.00	3.41
544	576	3.514777	CACGACTGTAGGTGCATGT	57.485	52.632	0.00	0.00	0.00	3.21
630	662	1.059584	TGACTTCCAGCCCAGACCAA	61.060	55.000	0.00	0.00	0.00	3.67
652	684	5.416083	TCGAGATTGTTGTAGGTACCATTG	58.584	41.667	15.94	0.00	0.00	2.82
895	933	7.718334	TTTATAGAGACAATGTGAGGTCAGA	57.282	36.000	0.00	0.00	36.50	3.27
948	986	1.750778	CGGAGGATTTGAAATGGTGGG	59.249	52.381	0.00	0.00	0.00	4.61
1359	1397	2.628657	GGACTTCTCGGTGGTAGCATAT	59.371	50.000	0.00	0.00	0.00	1.78
1451	1489	5.741425	CACCATACTTTAATGCATCGTCAG	58.259	41.667	0.00	0.00	0.00	3.51
1554	1592	0.603707	TCTTACCAGCAGCAGTGTGC	60.604	55.000	8.97	8.97	45.46	4.57
1555	1593	1.736126	CATCTTACCAGCAGCAGTGTG	59.264	52.381	0.00	0.00	0.00	3.82
1556	1594	1.625315	TCATCTTACCAGCAGCAGTGT	59.375	47.619	0.00	0.00	0.00	3.55
1557	1595	2.391616	TCATCTTACCAGCAGCAGTG	57.608	50.000	0.00	0.00	0.00	3.66
2027	2101	9.835389	CATTAAAACATGATTGGTAATGGGAAT	57.165	29.630	0.00	0.00	30.45	3.01
2079	2153	1.221414	AAGCAAGTCAAGCGTGTCTC	58.779	50.000	0.00	0.00	37.01	3.36
2196	2272	3.193056	TGTGTATTGGATGTGTGCATTGG	59.807	43.478	0.00	0.00	35.07	3.16
2226	2302	3.997021	GGAGCCATAATACATTGACTCGG	59.003	47.826	0.00	0.00	0.00	4.63
2298	2374	6.971184	GCAAGTCAAGCGTATCTTACTACTAA	59.029	38.462	0.00	0.00	32.74	2.24
2333	2409	5.644636	TGCATGTATACATCGATCATTGCAT	59.355	36.000	15.60	0.00	33.61	3.96
2334	2410	4.996122	TGCATGTATACATCGATCATTGCA	59.004	37.500	15.60	16.99	33.61	4.08
2335	2411	5.535043	TGCATGTATACATCGATCATTGC	57.465	39.130	15.60	14.73	33.61	3.56
2450	2527	3.873952	GAGCCATAACACATTGACTCCTC	59.126	47.826	0.00	0.00	0.00	3.71
2473	2550	3.002791	CGTATATCATTGCCGCTCCATT	58.997	45.455	0.00	0.00	0.00	3.16
2513	2592	5.560966	TGACGAAAGCTGAAGTTCTTTTT	57.439	34.783	4.17	2.44	33.14	1.94
2539	2619	1.079405	GGTCGGATGAACGGCAGAA	60.079	57.895	0.00	0.00	40.90	3.02
2546	2626	1.153349	GCAGGGAGGTCGGATGAAC	60.153	63.158	0.00	0.00	0.00	3.18
2589	2681	4.142071	GGGAGAAAAATCAAAGATGGGAGC	60.142	45.833	0.00	0.00	0.00	4.70
2707	3117	5.125097	AGTTGCTGGAATAAATCTGAAGCTG	59.875	40.000	0.00	0.00	33.18	4.24
2708	3118	5.125097	CAGTTGCTGGAATAAATCTGAAGCT	59.875	40.000	0.00	0.00	33.18	3.74
2709	3119	5.124457	TCAGTTGCTGGAATAAATCTGAAGC	59.876	40.000	0.00	0.00	32.85	3.86
2710	3120	6.748333	TCAGTTGCTGGAATAAATCTGAAG	57.252	37.500	0.00	0.00	31.51	3.02
2711	3121	7.177216	ACAATCAGTTGCTGGAATAAATCTGAA	59.823	33.333	3.91	0.00	38.96	3.02
2712	3122	6.660521	ACAATCAGTTGCTGGAATAAATCTGA	59.339	34.615	2.57	2.57	38.96	3.27
2713	3123	6.860080	ACAATCAGTTGCTGGAATAAATCTG	58.140	36.000	0.00	0.00	38.96	2.90
2714	3124	6.660521	TGACAATCAGTTGCTGGAATAAATCT	59.339	34.615	0.00	0.00	38.96	2.40
2715	3125	6.855836	TGACAATCAGTTGCTGGAATAAATC	58.144	36.000	0.00	0.00	38.96	2.17
2716	3126	6.839124	TGACAATCAGTTGCTGGAATAAAT	57.161	33.333	0.00	0.00	38.96	1.40
2717	3127	6.647334	TTGACAATCAGTTGCTGGAATAAA	57.353	33.333	0.00	0.00	38.96	1.40
2718	3128	6.647334	TTTGACAATCAGTTGCTGGAATAA	57.353	33.333	0.00	0.00	38.96	1.40
2719	3129	6.839124	ATTTGACAATCAGTTGCTGGAATA	57.161	33.333	0.00	0.00	38.96	1.75
2720	3130	5.733620	ATTTGACAATCAGTTGCTGGAAT	57.266	34.783	0.00	0.00	38.96	3.01
2721	3131	5.068855	TCAATTTGACAATCAGTTGCTGGAA	59.931	36.000	0.00	0.00	38.96	3.53
2734	3144	2.487762	GGCGGATGACTCAATTTGACAA	59.512	45.455	0.00	0.00	0.00	3.18
2752	3162	0.301687	CAATCATCGAAAGGACGGCG	59.698	55.000	4.80	4.80	0.00	6.46
2797	3234	7.232534	AGACAAGAAAATATAACTTTGTGGCCA	59.767	33.333	0.00	0.00	0.00	5.36

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.