Multiple sequence alignment - TraesCS6B01G028700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G028700 chr6B 100.000 3808 0 0 1 3808 17376249 17380056 0.000000e+00 7033.0
1 TraesCS6B01G028700 chr6B 91.188 1237 58 25 1 1204 17367169 17368387 0.000000e+00 1633.0
2 TraesCS6B01G028700 chr6B 83.422 187 24 6 453 639 17367460 17367639 2.350000e-37 167.0
3 TraesCS6B01G028700 chr6B 94.444 108 6 0 1474 1581 506128090 506127983 2.350000e-37 167.0
4 TraesCS6B01G028700 chr6B 92.593 108 8 0 1474 1581 204159244 204159137 5.090000e-34 156.0
5 TraesCS6B01G028700 chr6D 87.746 1322 91 33 206 1473 9345739 9347043 0.000000e+00 1478.0
6 TraesCS6B01G028700 chr6D 86.813 910 70 25 1581 2458 9347045 9347936 0.000000e+00 970.0
7 TraesCS6B01G028700 chr6D 88.026 760 43 17 2534 3261 9347999 9348742 0.000000e+00 856.0
8 TraesCS6B01G028700 chr6D 90.099 303 29 1 3507 3808 9349781 9350083 3.570000e-105 392.0
9 TraesCS6B01G028700 chr6D 86.486 185 18 2 1 180 9345560 9345742 3.000000e-46 196.0
10 TraesCS6B01G028700 chr6D 86.429 140 12 3 1880 2015 440540922 440540786 3.070000e-31 147.0
11 TraesCS6B01G028700 chr6D 96.078 51 2 0 2463 2513 9347974 9348024 2.440000e-12 84.2
12 TraesCS6B01G028700 chr6D 94.444 54 1 2 682 735 93529470 93529419 8.770000e-12 82.4
13 TraesCS6B01G028700 chr6A 82.140 1327 84 56 216 1477 11253025 11251787 0.000000e+00 996.0
14 TraesCS6B01G028700 chr6A 85.647 850 60 29 1653 2458 11251485 11250654 0.000000e+00 837.0
15 TraesCS6B01G028700 chr6A 86.111 648 50 18 2499 3123 11250643 11250013 0.000000e+00 662.0
16 TraesCS6B01G028700 chr6A 87.912 182 12 6 8 183 11253207 11253030 4.990000e-49 206.0
17 TraesCS6B01G028700 chr6A 91.045 67 6 0 1581 1647 11251579 11251513 1.460000e-14 91.6
18 TraesCS6B01G028700 chr7A 83.051 472 43 25 954 1399 100719482 100719942 9.920000e-106 394.0
19 TraesCS6B01G028700 chr7A 85.714 140 14 2 1880 2015 1171432 1171295 3.970000e-30 143.0
20 TraesCS6B01G028700 chr7A 94.231 52 1 2 692 742 513221084 513221034 1.130000e-10 78.7
21 TraesCS6B01G028700 chr7B 88.571 315 24 8 954 1267 53628669 53628972 4.650000e-99 372.0
22 TraesCS6B01G028700 chr7B 81.499 427 47 19 999 1399 331540263 331539843 4.750000e-84 322.0
23 TraesCS6B01G028700 chr7B 85.075 134 14 2 1886 2015 97117685 97117554 8.580000e-27 132.0
24 TraesCS6B01G028700 chr7D 81.992 472 39 30 954 1399 98619967 98620418 3.620000e-95 359.0
25 TraesCS6B01G028700 chr7D 93.578 109 6 1 1473 1581 60693480 60693373 1.090000e-35 161.0
26 TraesCS6B01G028700 chrUn 86.032 315 31 8 954 1267 265946235 265946537 3.670000e-85 326.0
27 TraesCS6B01G028700 chrUn 85.397 315 33 8 954 1267 433014765 433014463 7.940000e-82 315.0
28 TraesCS6B01G028700 chrUn 92.593 108 8 0 1474 1581 94181978 94181871 5.090000e-34 156.0
29 TraesCS6B01G028700 chr2B 80.879 455 50 20 971 1399 254787825 254787382 1.320000e-84 324.0
30 TraesCS6B01G028700 chr2B 86.014 143 14 3 1877 2015 21234716 21234856 8.520000e-32 148.0
31 TraesCS6B01G028700 chr1D 93.578 109 7 0 1473 1581 465596912 465596804 3.040000e-36 163.0
32 TraesCS6B01G028700 chr4D 92.661 109 8 0 1474 1582 494122896 494123004 1.420000e-34 158.0
33 TraesCS6B01G028700 chr5A 92.593 108 8 0 1474 1581 658993696 658993803 5.090000e-34 156.0
34 TraesCS6B01G028700 chr2A 92.593 108 8 0 1474 1581 449280031 449280138 5.090000e-34 156.0
35 TraesCS6B01G028700 chr5D 86.429 140 13 2 1880 2015 480164568 480164431 8.520000e-32 148.0
36 TraesCS6B01G028700 chr1A 88.000 125 11 3 1464 1586 518771135 518771013 1.100000e-30 145.0
37 TraesCS6B01G028700 chr1A 92.593 54 2 2 682 734 13348881 13348829 4.080000e-10 76.8
38 TraesCS6B01G028700 chr2D 85.075 134 14 2 1886 2015 586832484 586832615 8.580000e-27 132.0
39 TraesCS6B01G028700 chr2D 85.075 134 13 3 1886 2015 104540258 104540128 3.090000e-26 130.0
40 TraesCS6B01G028700 chr4A 94.340 53 3 0 1353 1405 724134385 724134333 8.770000e-12 82.4
41 TraesCS6B01G028700 chr3D 90.769 65 1 5 692 755 30004963 30005023 8.770000e-12 82.4
42 TraesCS6B01G028700 chr1B 94.444 54 1 2 682 734 17017366 17017418 8.770000e-12 82.4
43 TraesCS6B01G028700 chr1B 92.593 54 2 2 692 745 493871921 493871870 4.080000e-10 76.8
44 TraesCS6B01G028700 chr3A 87.879 66 6 2 683 747 8658438 8658374 4.080000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G028700 chr6B 17376249 17380056 3807 False 7033.00 7033 100.000 1 3808 1 chr6B.!!$F1 3807
1 TraesCS6B01G028700 chr6B 17367169 17368387 1218 False 900.00 1633 87.305 1 1204 2 chr6B.!!$F2 1203
2 TraesCS6B01G028700 chr6D 9345560 9350083 4523 False 662.70 1478 89.208 1 3808 6 chr6D.!!$F1 3807
3 TraesCS6B01G028700 chr6A 11250013 11253207 3194 True 558.52 996 86.571 8 3123 5 chr6A.!!$R1 3115

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
165 171 1.270947 TGACCCGGAAATTGCGTTAGT 60.271 47.619 0.73 0.2 0.0 2.24 F
1407 1495 0.246635 GCCGGTGAGTCTCTGCTTAA 59.753 55.000 1.90 0.0 0.0 1.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1436 1538 0.043566 CATCGATCTTCAAGTGCGCG 60.044 55.0 0.0 0.0 0.00 6.86 R
3278 3616 0.032540 CAGCAAAGGTGGGCTTTCAC 59.967 55.0 0.0 0.0 38.56 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
165 171 1.270947 TGACCCGGAAATTGCGTTAGT 60.271 47.619 0.73 0.20 0.00 2.24
169 175 2.226912 CCCGGAAATTGCGTTAGTTCAA 59.773 45.455 0.73 0.00 0.00 2.69
184 190 2.367567 AGTTCAAACGGCTCTTAGACCA 59.632 45.455 0.00 0.00 0.00 4.02
285 291 4.142534 CCTGATGGTATTTTGTGCAGTCAG 60.143 45.833 0.00 0.00 0.00 3.51
388 402 9.597170 AAATTTACTCCTCCGTAAAGTAATCTC 57.403 33.333 0.00 0.00 41.19 2.75
544 574 7.406104 ACTCTTAAAATTTACTCCCTCTGCAT 58.594 34.615 0.00 0.00 0.00 3.96
727 757 4.630069 ACGACACTTATTTTGGATCGGAAG 59.370 41.667 0.00 0.00 32.56 3.46
735 765 4.417426 TTTTGGATCGGAAGGGAGTATC 57.583 45.455 0.00 0.00 0.00 2.24
766 796 8.514136 TGCAAGGATTTAGTAAAATTTGTTCG 57.486 30.769 0.00 0.00 35.41 3.95
781 811 7.506296 AATTTGTTCGAAGTCAAAGTTGTTC 57.494 32.000 16.15 0.00 36.45 3.18
803 833 5.126396 CCAAAATTGGGACTGTTCTCTTC 57.874 43.478 4.18 0.00 44.70 2.87
804 834 4.829492 CCAAAATTGGGACTGTTCTCTTCT 59.171 41.667 4.18 0.00 44.70 2.85
805 835 5.048434 CCAAAATTGGGACTGTTCTCTTCTC 60.048 44.000 4.18 0.00 44.70 2.87
806 836 5.574970 AAATTGGGACTGTTCTCTTCTCT 57.425 39.130 0.00 0.00 0.00 3.10
807 837 5.574970 AATTGGGACTGTTCTCTTCTCTT 57.425 39.130 0.00 0.00 0.00 2.85
808 838 5.574970 ATTGGGACTGTTCTCTTCTCTTT 57.425 39.130 0.00 0.00 0.00 2.52
809 839 5.373812 TTGGGACTGTTCTCTTCTCTTTT 57.626 39.130 0.00 0.00 0.00 2.27
810 840 5.373812 TGGGACTGTTCTCTTCTCTTTTT 57.626 39.130 0.00 0.00 0.00 1.94
975 1040 3.062466 CTCCCGTCCACGCTCTCA 61.062 66.667 0.00 0.00 38.18 3.27
1307 1395 6.480524 TCCACACGAAATTAATCTCTTGTG 57.519 37.500 17.30 17.30 34.25 3.33
1405 1493 2.659610 GCCGGTGAGTCTCTGCTT 59.340 61.111 1.90 0.00 0.00 3.91
1406 1494 1.605058 GGCCGGTGAGTCTCTGCTTA 61.605 60.000 1.90 0.00 0.00 3.09
1407 1495 0.246635 GCCGGTGAGTCTCTGCTTAA 59.753 55.000 1.90 0.00 0.00 1.85
1409 1497 2.544685 CCGGTGAGTCTCTGCTTAATG 58.455 52.381 0.65 0.00 0.00 1.90
1436 1538 4.058817 CCCTGATTGATTAGTAAGGCGAC 58.941 47.826 0.00 0.00 0.00 5.19
1457 1560 1.394917 GCGCACTTGAAGATCGATGTT 59.605 47.619 7.63 7.63 0.00 2.71
1464 1567 3.317603 TGAAGATCGATGTTGCTGTGA 57.682 42.857 13.16 0.00 0.00 3.58
1473 1576 3.058708 CGATGTTGCTGTGATGTTCTTGT 60.059 43.478 0.00 0.00 0.00 3.16
1474 1577 4.152223 CGATGTTGCTGTGATGTTCTTGTA 59.848 41.667 0.00 0.00 0.00 2.41
1475 1578 4.811555 TGTTGCTGTGATGTTCTTGTAC 57.188 40.909 0.00 0.00 0.00 2.90
1476 1579 4.450976 TGTTGCTGTGATGTTCTTGTACT 58.549 39.130 0.00 0.00 0.00 2.73
1477 1580 4.511454 TGTTGCTGTGATGTTCTTGTACTC 59.489 41.667 0.00 0.00 0.00 2.59
1478 1581 3.664107 TGCTGTGATGTTCTTGTACTCC 58.336 45.455 0.00 0.00 0.00 3.85
1479 1582 3.003480 GCTGTGATGTTCTTGTACTCCC 58.997 50.000 0.00 0.00 0.00 4.30
1480 1583 3.307059 GCTGTGATGTTCTTGTACTCCCT 60.307 47.826 0.00 0.00 0.00 4.20
1481 1584 4.499183 CTGTGATGTTCTTGTACTCCCTC 58.501 47.826 0.00 0.00 0.00 4.30
1482 1585 3.260884 TGTGATGTTCTTGTACTCCCTCC 59.739 47.826 0.00 0.00 0.00 4.30
1484 1587 2.005370 TGTTCTTGTACTCCCTCCGT 57.995 50.000 0.00 0.00 0.00 4.69
1485 1588 2.322658 TGTTCTTGTACTCCCTCCGTT 58.677 47.619 0.00 0.00 0.00 4.44
1487 1590 2.297698 TCTTGTACTCCCTCCGTTCA 57.702 50.000 0.00 0.00 0.00 3.18
1490 1593 2.005370 TGTACTCCCTCCGTTCACTT 57.995 50.000 0.00 0.00 0.00 3.16
1491 1594 2.322658 TGTACTCCCTCCGTTCACTTT 58.677 47.619 0.00 0.00 0.00 2.66
1493 1596 3.896888 TGTACTCCCTCCGTTCACTTTTA 59.103 43.478 0.00 0.00 0.00 1.52
1494 1597 4.529377 TGTACTCCCTCCGTTCACTTTTAT 59.471 41.667 0.00 0.00 0.00 1.40
1495 1598 5.716228 TGTACTCCCTCCGTTCACTTTTATA 59.284 40.000 0.00 0.00 0.00 0.98
1496 1599 5.340439 ACTCCCTCCGTTCACTTTTATAG 57.660 43.478 0.00 0.00 0.00 1.31
1497 1600 4.776308 ACTCCCTCCGTTCACTTTTATAGT 59.224 41.667 0.00 0.00 37.68 2.12
1498 1601 5.247792 ACTCCCTCCGTTCACTTTTATAGTT 59.752 40.000 0.00 0.00 33.85 2.24
1499 1602 5.727434 TCCCTCCGTTCACTTTTATAGTTC 58.273 41.667 0.00 0.00 33.85 3.01
1500 1603 4.565564 CCCTCCGTTCACTTTTATAGTTCG 59.434 45.833 0.00 0.00 33.85 3.95
1502 1605 5.636543 CCTCCGTTCACTTTTATAGTTCGTT 59.363 40.000 0.00 0.00 33.85 3.85
1503 1606 6.146673 CCTCCGTTCACTTTTATAGTTCGTTT 59.853 38.462 0.00 0.00 33.85 3.60
1504 1607 7.109006 TCCGTTCACTTTTATAGTTCGTTTC 57.891 36.000 0.00 0.00 33.85 2.78
1505 1608 6.700960 TCCGTTCACTTTTATAGTTCGTTTCA 59.299 34.615 0.00 0.00 33.85 2.69
1508 1611 7.734726 CGTTCACTTTTATAGTTCGTTTCAGAC 59.265 37.037 0.00 0.00 33.85 3.51
1509 1612 8.545420 GTTCACTTTTATAGTTCGTTTCAGACA 58.455 33.333 0.00 0.00 33.85 3.41
1510 1613 8.651391 TCACTTTTATAGTTCGTTTCAGACAA 57.349 30.769 0.00 0.00 33.85 3.18
1511 1614 8.545420 TCACTTTTATAGTTCGTTTCAGACAAC 58.455 33.333 0.00 0.00 33.85 3.32
1512 1615 8.548721 CACTTTTATAGTTCGTTTCAGACAACT 58.451 33.333 0.00 0.00 33.85 3.16
1513 1616 8.548721 ACTTTTATAGTTCGTTTCAGACAACTG 58.451 33.333 0.00 0.00 38.52 3.16
1514 1617 4.992381 ATAGTTCGTTTCAGACAACTGC 57.008 40.909 0.00 0.00 43.17 4.40
1519 1622 2.802247 TCGTTTCAGACAACTGCAGATG 59.198 45.455 23.35 22.16 43.17 2.90
1520 1623 2.802247 CGTTTCAGACAACTGCAGATGA 59.198 45.455 28.46 16.16 43.17 2.92
1522 1625 2.090400 TCAGACAACTGCAGATGAGC 57.910 50.000 28.46 19.00 43.17 4.26
1523 1626 1.622312 TCAGACAACTGCAGATGAGCT 59.378 47.619 28.46 20.67 43.17 4.09
1525 1628 3.450096 TCAGACAACTGCAGATGAGCTAT 59.550 43.478 28.46 7.35 43.17 2.97
1526 1629 4.081254 TCAGACAACTGCAGATGAGCTATT 60.081 41.667 28.46 6.60 43.17 1.73
1527 1630 4.634883 CAGACAACTGCAGATGAGCTATTT 59.365 41.667 28.46 5.87 37.33 1.40
1529 1632 5.123502 AGACAACTGCAGATGAGCTATTTTG 59.876 40.000 28.46 16.09 34.99 2.44
1531 1634 3.349927 ACTGCAGATGAGCTATTTTGCA 58.650 40.909 23.35 11.58 37.34 4.08
1533 1636 2.424601 TGCAGATGAGCTATTTTGCACC 59.575 45.455 8.90 0.00 35.84 5.01
1534 1637 2.223665 GCAGATGAGCTATTTTGCACCC 60.224 50.000 6.14 0.00 32.85 4.61
1537 1640 2.584835 TGAGCTATTTTGCACCCTGT 57.415 45.000 0.00 0.00 34.99 4.00
1538 1641 2.436417 TGAGCTATTTTGCACCCTGTC 58.564 47.619 0.00 0.00 34.99 3.51
1539 1642 2.040278 TGAGCTATTTTGCACCCTGTCT 59.960 45.455 0.00 0.00 34.99 3.41
1540 1643 2.421424 GAGCTATTTTGCACCCTGTCTG 59.579 50.000 0.00 0.00 34.99 3.51
1541 1644 2.040278 AGCTATTTTGCACCCTGTCTGA 59.960 45.455 0.00 0.00 34.99 3.27
1542 1645 2.819608 GCTATTTTGCACCCTGTCTGAA 59.180 45.455 0.00 0.00 0.00 3.02
1543 1646 3.255642 GCTATTTTGCACCCTGTCTGAAA 59.744 43.478 0.00 0.00 0.00 2.69
1544 1647 4.082026 GCTATTTTGCACCCTGTCTGAAAT 60.082 41.667 0.00 0.00 0.00 2.17
1547 1650 1.896220 TGCACCCTGTCTGAAATGTC 58.104 50.000 0.00 0.00 0.00 3.06
1549 1652 2.158623 TGCACCCTGTCTGAAATGTCTT 60.159 45.455 0.00 0.00 0.00 3.01
1550 1653 2.485814 GCACCCTGTCTGAAATGTCTTC 59.514 50.000 0.00 0.00 0.00 2.87
1551 1654 3.743521 CACCCTGTCTGAAATGTCTTCA 58.256 45.455 0.00 0.00 0.00 3.02
1552 1655 4.136796 CACCCTGTCTGAAATGTCTTCAA 58.863 43.478 0.00 0.00 0.00 2.69
1553 1656 4.214971 CACCCTGTCTGAAATGTCTTCAAG 59.785 45.833 0.00 0.00 0.00 3.02
1554 1657 3.755378 CCCTGTCTGAAATGTCTTCAAGG 59.245 47.826 0.00 0.00 0.00 3.61
1555 1658 3.190118 CCTGTCTGAAATGTCTTCAAGGC 59.810 47.826 0.00 0.00 0.00 4.35
1556 1659 3.149196 TGTCTGAAATGTCTTCAAGGCC 58.851 45.455 0.00 0.00 0.00 5.19
1557 1660 3.181440 TGTCTGAAATGTCTTCAAGGCCT 60.181 43.478 0.00 0.00 0.00 5.19
1558 1661 3.823304 GTCTGAAATGTCTTCAAGGCCTT 59.177 43.478 13.78 13.78 0.00 4.35
1559 1662 5.003804 GTCTGAAATGTCTTCAAGGCCTTA 58.996 41.667 20.00 2.00 0.00 2.69
1560 1663 5.649831 GTCTGAAATGTCTTCAAGGCCTTAT 59.350 40.000 20.00 3.68 0.00 1.73
1561 1664 6.823689 GTCTGAAATGTCTTCAAGGCCTTATA 59.176 38.462 20.00 6.65 0.00 0.98
1562 1665 7.336931 GTCTGAAATGTCTTCAAGGCCTTATAA 59.663 37.037 20.00 14.54 0.00 0.98
1565 1668 8.522830 TGAAATGTCTTCAAGGCCTTATAAAAG 58.477 33.333 20.00 18.05 0.00 2.27
1566 1669 8.650143 AAATGTCTTCAAGGCCTTATAAAAGA 57.350 30.769 20.00 19.88 34.37 2.52
1567 1670 7.872113 ATGTCTTCAAGGCCTTATAAAAGAG 57.128 36.000 20.00 2.91 34.37 2.85
1568 1671 7.016153 TGTCTTCAAGGCCTTATAAAAGAGA 57.984 36.000 20.00 18.43 34.37 3.10
1569 1672 7.458397 TGTCTTCAAGGCCTTATAAAAGAGAA 58.542 34.615 20.00 13.53 34.37 2.87
1570 1673 7.390718 TGTCTTCAAGGCCTTATAAAAGAGAAC 59.609 37.037 20.00 13.04 34.37 3.01
1571 1674 7.390718 GTCTTCAAGGCCTTATAAAAGAGAACA 59.609 37.037 20.00 0.00 34.37 3.18
1572 1675 7.607991 TCTTCAAGGCCTTATAAAAGAGAACAG 59.392 37.037 20.00 4.66 34.37 3.16
1573 1676 7.016153 TCAAGGCCTTATAAAAGAGAACAGA 57.984 36.000 20.00 2.74 34.37 3.41
1574 1677 7.106239 TCAAGGCCTTATAAAAGAGAACAGAG 58.894 38.462 20.00 0.00 34.37 3.35
1575 1678 5.995446 AGGCCTTATAAAAGAGAACAGAGG 58.005 41.667 0.00 0.00 34.37 3.69
1577 1680 5.104485 GGCCTTATAAAAGAGAACAGAGGGA 60.104 44.000 0.00 0.00 34.37 4.20
1614 1820 4.451774 CCGTTAATTGGTAGTTTGGTCGAA 59.548 41.667 0.00 0.00 0.00 3.71
1636 1843 2.093658 TGTAAGAGATTCGCCAAGGTCC 60.094 50.000 0.00 0.00 0.00 4.46
1638 1845 1.153147 GAGATTCGCCAAGGTCCCC 60.153 63.158 0.00 0.00 0.00 4.81
1708 1949 4.626042 CACTAGTATCTGATTCTGGTGGC 58.374 47.826 23.72 0.00 36.17 5.01
1721 1962 2.647297 GTGGCTTGCAGCTTGTCC 59.353 61.111 7.85 0.00 41.99 4.02
1722 1963 2.598394 TGGCTTGCAGCTTGTCCC 60.598 61.111 7.85 0.00 41.99 4.46
1724 1965 3.376918 GCTTGCAGCTTGTCCCCC 61.377 66.667 0.00 0.00 38.45 5.40
1729 1970 3.068881 CAGCTTGTCCCCCTCGAA 58.931 61.111 0.00 0.00 0.00 3.71
1749 1990 7.432252 CCTCGAATTAATTTGGTTATGCTTGAC 59.568 37.037 14.26 0.00 0.00 3.18
1761 2002 2.488204 TGCTTGACCATTCCGATTCA 57.512 45.000 0.00 0.00 0.00 2.57
1851 2119 6.955364 AGTTTAGGGCTTTAGGTAAGGTAAG 58.045 40.000 0.00 0.00 34.26 2.34
1899 2167 5.195185 TGATGTGGATATGCAATGTGACTT 58.805 37.500 0.00 0.00 0.00 3.01
1917 2185 3.262420 ACTTACAATTCCTAGCTGTGCG 58.738 45.455 0.00 0.00 0.00 5.34
1958 2230 0.034896 GTGTATGGTATCCTGGGGCG 59.965 60.000 0.00 0.00 0.00 6.13
2021 2293 4.186241 ACAACACAAAAACTAGTACGCG 57.814 40.909 3.53 3.53 0.00 6.01
2030 2302 2.608467 ACTAGTACGCGTGACAGTTC 57.392 50.000 24.59 3.41 0.00 3.01
2037 2309 0.874175 CGCGTGACAGTTCAACCAGA 60.874 55.000 0.00 0.00 31.90 3.86
2068 2340 5.238432 TGGATGCATGAATTACAATCGGTAC 59.762 40.000 2.46 0.00 0.00 3.34
2086 2358 4.088648 GGTACGATTTTCAACATCGCAAG 58.911 43.478 5.84 0.00 46.17 4.01
2332 2609 0.670162 ATGTTCAGTGCTGTGCCAAC 59.330 50.000 0.00 0.00 0.00 3.77
2340 2617 3.057386 CAGTGCTGTGCCAACATATTCAA 60.057 43.478 0.00 0.00 35.22 2.69
2372 2649 2.024369 CCCCAGTTACCCCAAGCTATTT 60.024 50.000 0.00 0.00 0.00 1.40
2380 2657 7.010771 AGTTACCCCAAGCTATTTTCTTTTCT 58.989 34.615 0.00 0.00 0.00 2.52
2425 2702 7.093552 CCTGAATACCAGATAGATAGAAGGTGG 60.094 44.444 0.00 0.00 45.78 4.61
2484 2794 0.617820 ACCGGGTCAGAAGGCATACT 60.618 55.000 6.32 0.00 0.00 2.12
2513 2823 2.890311 CCAAACCATGTAGAAACCTGCA 59.110 45.455 0.00 0.00 0.00 4.41
2527 2837 3.492102 ACCTGCAACACACATAGAACT 57.508 42.857 0.00 0.00 0.00 3.01
2529 2839 4.968259 ACCTGCAACACACATAGAACTTA 58.032 39.130 0.00 0.00 0.00 2.24
2532 2842 5.337219 TGCAACACACATAGAACTTAACG 57.663 39.130 0.00 0.00 0.00 3.18
2534 2844 5.137403 GCAACACACATAGAACTTAACGTG 58.863 41.667 0.00 0.00 0.00 4.49
2535 2845 5.277154 GCAACACACATAGAACTTAACGTGT 60.277 40.000 0.00 0.00 38.07 4.49
2536 2846 6.711579 CAACACACATAGAACTTAACGTGTT 58.288 36.000 0.00 0.00 44.66 3.32
2537 2847 6.520792 ACACACATAGAACTTAACGTGTTC 57.479 37.500 8.74 8.74 42.77 3.18
2538 2848 5.464389 ACACACATAGAACTTAACGTGTTCC 59.536 40.000 12.21 0.00 43.28 3.62
2539 2849 4.992951 ACACATAGAACTTAACGTGTTCCC 59.007 41.667 12.21 0.00 43.28 3.97
2540 2850 4.992319 CACATAGAACTTAACGTGTTCCCA 59.008 41.667 12.21 3.50 43.28 4.37
2541 2851 5.467399 CACATAGAACTTAACGTGTTCCCAA 59.533 40.000 12.21 1.75 43.28 4.12
2542 2852 6.017770 CACATAGAACTTAACGTGTTCCCAAA 60.018 38.462 12.21 0.00 43.28 3.28
2543 2853 4.888038 AGAACTTAACGTGTTCCCAAAC 57.112 40.909 12.21 0.00 43.28 2.93
2544 2854 3.628942 AGAACTTAACGTGTTCCCAAACC 59.371 43.478 12.21 0.00 43.28 3.27
2545 2855 3.286329 ACTTAACGTGTTCCCAAACCT 57.714 42.857 0.00 0.00 34.28 3.50
2546 2856 3.623703 ACTTAACGTGTTCCCAAACCTT 58.376 40.909 0.00 0.00 34.28 3.50
2547 2857 3.379057 ACTTAACGTGTTCCCAAACCTTG 59.621 43.478 0.00 0.00 34.28 3.61
2548 2858 1.842052 AACGTGTTCCCAAACCTTGT 58.158 45.000 0.00 0.00 34.28 3.16
2549 2859 2.713863 ACGTGTTCCCAAACCTTGTA 57.286 45.000 0.00 0.00 34.28 2.41
2550 2860 2.567985 ACGTGTTCCCAAACCTTGTAG 58.432 47.619 0.00 0.00 34.28 2.74
2551 2861 2.171027 ACGTGTTCCCAAACCTTGTAGA 59.829 45.455 0.00 0.00 34.28 2.59
2552 2862 3.207778 CGTGTTCCCAAACCTTGTAGAA 58.792 45.455 0.00 0.00 34.28 2.10
2553 2863 3.628487 CGTGTTCCCAAACCTTGTAGAAA 59.372 43.478 0.00 0.00 34.28 2.52
2554 2864 4.496840 CGTGTTCCCAAACCTTGTAGAAAC 60.497 45.833 0.00 0.00 34.28 2.78
2555 2865 3.955551 TGTTCCCAAACCTTGTAGAAACC 59.044 43.478 0.00 0.00 34.28 3.27
2556 2866 4.212716 GTTCCCAAACCTTGTAGAAACCT 58.787 43.478 0.00 0.00 0.00 3.50
2557 2867 5.104024 TGTTCCCAAACCTTGTAGAAACCTA 60.104 40.000 0.00 0.00 34.28 3.08
2558 2868 4.976864 TCCCAAACCTTGTAGAAACCTAC 58.023 43.478 0.00 0.00 37.59 3.18
2559 2869 4.077108 CCCAAACCTTGTAGAAACCTACC 58.923 47.826 0.00 0.00 36.54 3.18
2560 2870 4.446600 CCCAAACCTTGTAGAAACCTACCA 60.447 45.833 0.00 0.00 36.54 3.25
2561 2871 4.517832 CCAAACCTTGTAGAAACCTACCAC 59.482 45.833 0.00 0.00 36.54 4.16
2562 2872 5.127491 CAAACCTTGTAGAAACCTACCACA 58.873 41.667 0.00 0.00 36.54 4.17
2563 2873 4.347360 ACCTTGTAGAAACCTACCACAC 57.653 45.455 0.00 0.00 36.54 3.82
2564 2874 3.712733 ACCTTGTAGAAACCTACCACACA 59.287 43.478 0.00 0.00 36.54 3.72
2565 2875 4.062991 CCTTGTAGAAACCTACCACACAC 58.937 47.826 0.00 0.00 36.54 3.82
2566 2876 3.374220 TGTAGAAACCTACCACACACG 57.626 47.619 0.00 0.00 36.54 4.49
2567 2877 2.694628 TGTAGAAACCTACCACACACGT 59.305 45.455 0.00 0.00 36.54 4.49
2577 2887 4.022935 CCTACCACACACGTAGACACTTAA 60.023 45.833 0.00 0.00 36.14 1.85
2579 2889 2.722629 CCACACACGTAGACACTTAACG 59.277 50.000 0.00 0.00 42.17 3.18
2588 2898 5.149273 CGTAGACACTTAACGTAGCTGAAA 58.851 41.667 0.00 0.00 32.16 2.69
2589 2899 5.798934 CGTAGACACTTAACGTAGCTGAAAT 59.201 40.000 0.00 0.00 32.16 2.17
2647 2957 4.102367 GGGATTCCTCACTTTAGCTGATCT 59.898 45.833 2.01 0.00 0.00 2.75
2648 2958 5.305644 GGGATTCCTCACTTTAGCTGATCTA 59.694 44.000 2.01 0.00 0.00 1.98
2758 3068 1.927895 CAGAAGACGGTGCAGGATAC 58.072 55.000 0.00 0.00 0.00 2.24
2817 3133 3.120477 CGCCACTGCTTAATTCGTTACAA 60.120 43.478 0.00 0.00 34.43 2.41
2836 3152 7.465173 GTTACAAGCTAGAACATTTAGAAGGC 58.535 38.462 0.00 0.00 0.00 4.35
2845 3161 2.250188 CATTTAGAAGGCGGCAAAACG 58.750 47.619 13.08 0.00 0.00 3.60
2885 3201 1.406447 GTCGAACTGTTCAGACGGTC 58.594 55.000 19.56 0.00 44.55 4.79
2902 3218 4.598257 CGGTTGATCTGCCGTCTT 57.402 55.556 16.68 0.00 42.73 3.01
2961 3289 0.254747 CATAGTTGAAAGGGCCCCGA 59.745 55.000 21.43 0.00 0.00 5.14
3001 3335 4.260132 CGCTGTCTTGCTAAAGATGATGTC 60.260 45.833 0.00 0.00 44.18 3.06
3008 3342 1.781429 CTAAAGATGATGTCGCCGTCG 59.219 52.381 0.00 0.00 0.00 5.12
3058 3396 2.160221 GCAATGCCGCGTTTCCATG 61.160 57.895 4.92 0.00 0.00 3.66
3099 3437 1.472480 CTCGGCATTAGTTTGGTTGGG 59.528 52.381 0.00 0.00 0.00 4.12
3104 3442 1.899142 CATTAGTTTGGTTGGGGTGGG 59.101 52.381 0.00 0.00 0.00 4.61
3123 3461 6.095021 GGGTGGGTCTCATGTAATAAAAGTTC 59.905 42.308 0.00 0.00 0.00 3.01
3126 3464 8.398665 GTGGGTCTCATGTAATAAAAGTTCATC 58.601 37.037 0.00 0.00 0.00 2.92
3136 3474 6.521151 AATAAAAGTTCATCCTTGCTCTGG 57.479 37.500 0.00 0.00 0.00 3.86
3137 3475 3.515602 AAAGTTCATCCTTGCTCTGGT 57.484 42.857 0.00 0.00 0.00 4.00
3138 3476 3.515602 AAGTTCATCCTTGCTCTGGTT 57.484 42.857 0.00 0.00 0.00 3.67
3139 3477 3.064900 AGTTCATCCTTGCTCTGGTTC 57.935 47.619 0.00 0.00 0.00 3.62
3140 3478 2.641815 AGTTCATCCTTGCTCTGGTTCT 59.358 45.455 0.00 0.00 0.00 3.01
3141 3479 3.073650 AGTTCATCCTTGCTCTGGTTCTT 59.926 43.478 0.00 0.00 0.00 2.52
3142 3480 3.795688 TCATCCTTGCTCTGGTTCTTT 57.204 42.857 0.00 0.00 0.00 2.52
3143 3481 4.104383 TCATCCTTGCTCTGGTTCTTTT 57.896 40.909 0.00 0.00 0.00 2.27
3144 3482 4.473444 TCATCCTTGCTCTGGTTCTTTTT 58.527 39.130 0.00 0.00 0.00 1.94
3185 3523 4.152647 TCTTGCTCTGTTAAGACTCTGGA 58.847 43.478 0.00 0.00 0.00 3.86
3206 3544 6.668645 TGGAACAGGGTAGCAATTAACATAT 58.331 36.000 0.00 0.00 0.00 1.78
3207 3545 7.807198 TGGAACAGGGTAGCAATTAACATATA 58.193 34.615 0.00 0.00 0.00 0.86
3208 3546 7.717875 TGGAACAGGGTAGCAATTAACATATAC 59.282 37.037 0.00 0.00 0.00 1.47
3209 3547 7.174426 GGAACAGGGTAGCAATTAACATATACC 59.826 40.741 0.00 0.00 33.44 2.73
3261 3599 3.116300 CGATTACCAGAAGTGATCCACG 58.884 50.000 0.00 0.00 38.04 4.94
3263 3601 3.868757 TTACCAGAAGTGATCCACGAG 57.131 47.619 0.00 0.00 39.64 4.18
3265 3603 1.273606 ACCAGAAGTGATCCACGAGTG 59.726 52.381 0.00 0.00 39.64 3.51
3267 3605 2.289072 CCAGAAGTGATCCACGAGTGTT 60.289 50.000 2.36 0.00 39.64 3.32
3268 3606 3.393800 CAGAAGTGATCCACGAGTGTTT 58.606 45.455 2.36 0.00 39.64 2.83
3271 3609 3.753294 AGTGATCCACGAGTGTTTCTT 57.247 42.857 2.36 0.00 39.64 2.52
3272 3610 3.654414 AGTGATCCACGAGTGTTTCTTC 58.346 45.455 2.36 0.00 39.64 2.87
3273 3611 3.322254 AGTGATCCACGAGTGTTTCTTCT 59.678 43.478 2.36 0.81 39.64 2.85
3274 3612 3.430218 GTGATCCACGAGTGTTTCTTCTG 59.570 47.826 2.36 0.00 0.00 3.02
3275 3613 2.526304 TCCACGAGTGTTTCTTCTGG 57.474 50.000 2.36 0.00 0.00 3.86
3276 3614 2.036387 TCCACGAGTGTTTCTTCTGGA 58.964 47.619 2.36 0.00 32.83 3.86
3277 3615 2.632996 TCCACGAGTGTTTCTTCTGGAT 59.367 45.455 2.36 0.00 31.33 3.41
3278 3616 2.738846 CCACGAGTGTTTCTTCTGGATG 59.261 50.000 2.36 0.00 0.00 3.51
3279 3617 3.393800 CACGAGTGTTTCTTCTGGATGT 58.606 45.455 0.00 0.00 0.00 3.06
3280 3618 3.185188 CACGAGTGTTTCTTCTGGATGTG 59.815 47.826 0.00 0.00 0.00 3.21
3282 3620 4.058124 CGAGTGTTTCTTCTGGATGTGAA 58.942 43.478 0.00 0.00 0.00 3.18
3283 3621 4.511454 CGAGTGTTTCTTCTGGATGTGAAA 59.489 41.667 0.00 0.00 0.00 2.69
3285 3623 4.276926 AGTGTTTCTTCTGGATGTGAAAGC 59.723 41.667 0.00 0.00 0.00 3.51
3286 3624 3.569701 TGTTTCTTCTGGATGTGAAAGCC 59.430 43.478 0.00 0.00 33.66 4.35
3287 3625 2.496899 TCTTCTGGATGTGAAAGCCC 57.503 50.000 0.00 0.00 31.11 5.19
3288 3626 1.704628 TCTTCTGGATGTGAAAGCCCA 59.295 47.619 0.00 0.00 31.11 5.36
3290 3628 0.038166 TCTGGATGTGAAAGCCCACC 59.962 55.000 0.00 0.00 36.26 4.61
3291 3629 0.038744 CTGGATGTGAAAGCCCACCT 59.961 55.000 0.00 0.00 36.26 4.00
3292 3630 0.482446 TGGATGTGAAAGCCCACCTT 59.518 50.000 0.00 0.00 36.26 3.50
3295 3633 0.681175 ATGTGAAAGCCCACCTTTGC 59.319 50.000 0.00 0.00 43.64 3.68
3296 3634 0.396974 TGTGAAAGCCCACCTTTGCT 60.397 50.000 0.00 0.00 43.64 3.91
3297 3635 0.032540 GTGAAAGCCCACCTTTGCTG 59.967 55.000 0.00 0.00 43.64 4.41
3298 3636 1.005748 GAAAGCCCACCTTTGCTGC 60.006 57.895 0.00 0.00 43.64 5.25
3299 3637 1.747325 GAAAGCCCACCTTTGCTGCA 61.747 55.000 0.00 0.00 43.64 4.41
3300 3638 1.751349 AAAGCCCACCTTTGCTGCAG 61.751 55.000 10.11 10.11 42.07 4.41
3301 3639 2.598394 GCCCACCTTTGCTGCAGA 60.598 61.111 20.43 0.00 0.00 4.26
3302 3640 2.924105 GCCCACCTTTGCTGCAGAC 61.924 63.158 20.43 9.67 0.00 3.51
3303 3641 2.270986 CCCACCTTTGCTGCAGACC 61.271 63.158 20.43 0.12 0.00 3.85
3305 3643 0.896940 CCACCTTTGCTGCAGACCAT 60.897 55.000 20.43 0.00 0.00 3.55
3306 3644 0.963962 CACCTTTGCTGCAGACCATT 59.036 50.000 20.43 0.00 0.00 3.16
3307 3645 1.342174 CACCTTTGCTGCAGACCATTT 59.658 47.619 20.43 0.00 0.00 2.32
3308 3646 1.342174 ACCTTTGCTGCAGACCATTTG 59.658 47.619 20.43 1.10 0.00 2.32
3312 3650 0.315886 TGCTGCAGACCATTTGCTTG 59.684 50.000 20.43 0.00 42.02 4.01
3324 3662 4.244862 CCATTTGCTTGGTTCACCATAAC 58.755 43.478 0.00 0.00 46.97 1.89
3334 3672 3.252458 GGTTCACCATAACCGGATATTGC 59.748 47.826 9.46 0.00 39.62 3.56
3335 3673 3.134574 TCACCATAACCGGATATTGCC 57.865 47.619 9.46 0.00 0.00 4.52
3337 3675 1.271163 ACCATAACCGGATATTGCCCG 60.271 52.381 9.46 0.00 46.10 6.13
3338 3676 1.271163 CCATAACCGGATATTGCCCGT 60.271 52.381 9.46 0.00 45.14 5.28
3342 3680 2.713863 ACCGGATATTGCCCGTAAAA 57.286 45.000 9.46 0.00 45.14 1.52
3343 3681 2.291365 ACCGGATATTGCCCGTAAAAC 58.709 47.619 9.46 0.00 45.14 2.43
3344 3682 2.092807 ACCGGATATTGCCCGTAAAACT 60.093 45.455 9.46 0.00 45.14 2.66
3345 3683 3.134442 ACCGGATATTGCCCGTAAAACTA 59.866 43.478 9.46 0.00 45.14 2.24
3347 3685 4.575645 CCGGATATTGCCCGTAAAACTAAA 59.424 41.667 0.00 0.00 45.14 1.85
3348 3686 5.239963 CCGGATATTGCCCGTAAAACTAAAT 59.760 40.000 0.00 0.00 45.14 1.40
3349 3687 6.427547 CCGGATATTGCCCGTAAAACTAAATA 59.572 38.462 0.00 0.00 45.14 1.40
3350 3688 7.120138 CCGGATATTGCCCGTAAAACTAAATAT 59.880 37.037 0.00 0.00 45.14 1.28
3351 3689 9.153721 CGGATATTGCCCGTAAAACTAAATATA 57.846 33.333 0.00 0.00 41.91 0.86
3379 3717 7.545362 AGTTCATAGTACAATTCATGTGAGC 57.455 36.000 0.00 0.00 43.77 4.26
3380 3718 7.334090 AGTTCATAGTACAATTCATGTGAGCT 58.666 34.615 0.00 0.00 43.77 4.09
3381 3719 7.826252 AGTTCATAGTACAATTCATGTGAGCTT 59.174 33.333 0.00 0.00 43.77 3.74
3383 3721 7.977904 TCATAGTACAATTCATGTGAGCTTTG 58.022 34.615 0.00 0.00 43.77 2.77
3384 3722 5.633830 AGTACAATTCATGTGAGCTTTGG 57.366 39.130 0.00 0.00 43.77 3.28
3385 3723 5.072741 AGTACAATTCATGTGAGCTTTGGT 58.927 37.500 0.00 0.00 43.77 3.67
3386 3724 4.247267 ACAATTCATGTGAGCTTTGGTG 57.753 40.909 0.00 0.00 41.93 4.17
3388 3726 4.341806 ACAATTCATGTGAGCTTTGGTGAA 59.658 37.500 7.64 7.64 41.93 3.18
3389 3727 4.778534 ATTCATGTGAGCTTTGGTGAAG 57.221 40.909 10.07 0.00 38.45 3.02
3391 3729 3.819368 TCATGTGAGCTTTGGTGAAGAA 58.181 40.909 0.00 0.00 37.57 2.52
3392 3730 3.565482 TCATGTGAGCTTTGGTGAAGAAC 59.435 43.478 0.00 0.00 37.57 3.01
3400 3738 3.905249 GGTGAAGAACCCATCGCC 58.095 61.111 0.00 0.00 44.02 5.54
3401 3739 1.299976 GGTGAAGAACCCATCGCCT 59.700 57.895 0.00 0.00 44.02 5.52
3404 3742 1.200020 GTGAAGAACCCATCGCCTTTG 59.800 52.381 0.00 0.00 0.00 2.77
3405 3743 1.073125 TGAAGAACCCATCGCCTTTGA 59.927 47.619 0.00 0.00 0.00 2.69
3406 3744 2.290896 TGAAGAACCCATCGCCTTTGAT 60.291 45.455 0.00 0.00 0.00 2.57
3407 3745 3.054728 TGAAGAACCCATCGCCTTTGATA 60.055 43.478 0.00 0.00 0.00 2.15
3408 3746 3.864789 AGAACCCATCGCCTTTGATAT 57.135 42.857 0.00 0.00 0.00 1.63
3409 3747 3.744660 AGAACCCATCGCCTTTGATATC 58.255 45.455 0.00 0.00 0.00 1.63
3410 3748 2.568623 ACCCATCGCCTTTGATATCC 57.431 50.000 0.00 0.00 0.00 2.59
3411 3749 1.073923 ACCCATCGCCTTTGATATCCC 59.926 52.381 0.00 0.00 0.00 3.85
3414 3752 2.554032 CCATCGCCTTTGATATCCCAAC 59.446 50.000 0.00 0.00 0.00 3.77
3417 3755 1.676006 CGCCTTTGATATCCCAACCAC 59.324 52.381 0.00 0.00 0.00 4.16
3418 3756 2.031870 GCCTTTGATATCCCAACCACC 58.968 52.381 0.00 0.00 0.00 4.61
3419 3757 2.666317 CCTTTGATATCCCAACCACCC 58.334 52.381 0.00 0.00 0.00 4.61
3420 3758 2.244769 CCTTTGATATCCCAACCACCCT 59.755 50.000 0.00 0.00 0.00 4.34
3421 3759 3.309848 CCTTTGATATCCCAACCACCCTT 60.310 47.826 0.00 0.00 0.00 3.95
3422 3760 3.662759 TTGATATCCCAACCACCCTTC 57.337 47.619 0.00 0.00 0.00 3.46
3423 3761 2.567862 TGATATCCCAACCACCCTTCA 58.432 47.619 0.00 0.00 0.00 3.02
3424 3762 2.922955 TGATATCCCAACCACCCTTCAA 59.077 45.455 0.00 0.00 0.00 2.69
3426 3764 0.856982 ATCCCAACCACCCTTCAACA 59.143 50.000 0.00 0.00 0.00 3.33
3427 3765 0.106419 TCCCAACCACCCTTCAACAC 60.106 55.000 0.00 0.00 0.00 3.32
3429 3767 1.452145 CCAACCACCCTTCAACACGG 61.452 60.000 0.00 0.00 0.00 4.94
3430 3768 1.826487 AACCACCCTTCAACACGGC 60.826 57.895 0.00 0.00 0.00 5.68
3431 3769 2.113139 CCACCCTTCAACACGGCT 59.887 61.111 0.00 0.00 0.00 5.52
3433 3771 1.654220 CACCCTTCAACACGGCTTG 59.346 57.895 0.00 0.00 0.00 4.01
3435 3773 0.818040 ACCCTTCAACACGGCTTGAC 60.818 55.000 0.00 0.00 29.62 3.18
3436 3774 0.535102 CCCTTCAACACGGCTTGACT 60.535 55.000 0.00 0.00 29.62 3.41
3437 3775 0.588252 CCTTCAACACGGCTTGACTG 59.412 55.000 0.00 0.00 29.62 3.51
3438 3776 0.040958 CTTCAACACGGCTTGACTGC 60.041 55.000 0.00 0.00 29.62 4.40
3439 3777 0.463654 TTCAACACGGCTTGACTGCT 60.464 50.000 0.00 0.00 29.62 4.24
3440 3778 0.463654 TCAACACGGCTTGACTGCTT 60.464 50.000 0.00 0.00 0.00 3.91
3441 3779 0.040958 CAACACGGCTTGACTGCTTC 60.041 55.000 0.00 0.00 0.00 3.86
3442 3780 1.498865 AACACGGCTTGACTGCTTCG 61.499 55.000 0.00 0.00 0.00 3.79
3443 3781 3.044305 ACGGCTTGACTGCTTCGC 61.044 61.111 0.00 0.00 0.00 4.70
3444 3782 2.740055 CGGCTTGACTGCTTCGCT 60.740 61.111 0.00 0.00 0.00 4.93
3446 3784 0.807667 CGGCTTGACTGCTTCGCTAT 60.808 55.000 0.00 0.00 0.00 2.97
3447 3785 0.654683 GGCTTGACTGCTTCGCTATG 59.345 55.000 0.00 0.00 0.00 2.23
3448 3786 1.363744 GCTTGACTGCTTCGCTATGT 58.636 50.000 0.00 0.00 0.00 2.29
3450 3788 2.537625 GCTTGACTGCTTCGCTATGTAG 59.462 50.000 0.00 0.00 0.00 2.74
3469 4536 1.480954 AGGCATGAACTGGTACCTACG 59.519 52.381 14.36 4.20 0.00 3.51
3482 4549 6.537660 ACTGGTACCTACGCATTTTTCTTATC 59.462 38.462 14.36 0.00 0.00 1.75
3483 4550 5.818857 TGGTACCTACGCATTTTTCTTATCC 59.181 40.000 14.36 0.00 0.00 2.59
3485 4552 7.147689 TGGTACCTACGCATTTTTCTTATCCTA 60.148 37.037 14.36 0.00 0.00 2.94
3490 4557 7.913821 CCTACGCATTTTTCTTATCCTAAAACC 59.086 37.037 0.00 0.00 0.00 3.27
3529 4661 2.444140 CCACCCCTCGGACCTAGG 60.444 72.222 7.41 7.41 0.00 3.02
3570 4702 2.043652 CCATGGCCCAGGGTTGAG 60.044 66.667 6.18 0.00 29.93 3.02
3580 4712 2.743928 GGGTTGAGTCAGCTGCCG 60.744 66.667 9.47 0.00 0.00 5.69
3582 4714 3.782244 GTTGAGTCAGCTGCCGCG 61.782 66.667 9.47 0.00 42.32 6.46
3587 4719 3.634072 GTCAGCTGCCGCGCTATG 61.634 66.667 9.47 0.00 42.32 2.23
3593 4725 0.384725 GCTGCCGCGCTATGTTATTG 60.385 55.000 5.56 0.00 0.00 1.90
3608 4740 2.282701 TATTGTACGCCACGAAGGAC 57.717 50.000 2.86 0.00 41.22 3.85
3610 4742 3.177249 GTACGCCACGAAGGACGC 61.177 66.667 2.86 0.00 46.94 5.19
3631 4763 4.578871 GCAGGGGCAAATATGTTCTTTTT 58.421 39.130 0.00 0.00 40.72 1.94
3641 4773 7.657354 GCAAATATGTTCTTTTTCCCAGAGTTT 59.343 33.333 0.00 0.00 0.00 2.66
3652 4784 9.631452 CTTTTTCCCAGAGTTTCTATTTTGATC 57.369 33.333 0.00 0.00 0.00 2.92
3708 4840 3.027170 CTGAACGCCACACATCGGC 62.027 63.158 0.00 0.00 46.62 5.54
3715 4847 4.402528 CACACATCGGCGGGGGAA 62.403 66.667 7.21 0.00 0.00 3.97
3727 4859 1.035385 CGGGGGAAAGGTGTATTGCC 61.035 60.000 0.00 0.00 37.53 4.52
3740 4872 2.948979 TGTATTGCCCCGACATCATTTC 59.051 45.455 0.00 0.00 0.00 2.17
3741 4873 2.142356 ATTGCCCCGACATCATTTCA 57.858 45.000 0.00 0.00 0.00 2.69
3754 4886 1.165270 CATTTCAGGGTGTCGGGAAC 58.835 55.000 0.00 0.00 0.00 3.62
3769 4901 0.883370 GGAACTGACCGTGTCCAACC 60.883 60.000 2.23 0.00 0.00 3.77
3779 4911 1.762858 TGTCCAACCGTCACTCCCA 60.763 57.895 0.00 0.00 0.00 4.37
3781 4913 2.032071 CCAACCGTCACTCCCACC 59.968 66.667 0.00 0.00 0.00 4.61
3792 4924 0.466739 ACTCCCACCGTCCCAAAAAC 60.467 55.000 0.00 0.00 0.00 2.43
3805 4937 5.105513 CGTCCCAAAAACAAGGCCTATTAAT 60.106 40.000 5.16 0.00 0.00 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
165 171 2.367567 ACTGGTCTAAGAGCCGTTTGAA 59.632 45.455 0.00 0.00 0.00 2.69
169 175 0.608640 CCACTGGTCTAAGAGCCGTT 59.391 55.000 0.00 0.00 0.00 4.44
686 716 4.701171 TGTCGTGGTTTTAGTTCAACCTTT 59.299 37.500 3.60 0.00 43.75 3.11
727 757 7.530426 AAATCCTTGCATAAATGATACTCCC 57.470 36.000 0.00 0.00 0.00 4.30
1267 1347 1.685517 TGGATGAGCGAGAAGGATGAG 59.314 52.381 0.00 0.00 0.00 2.90
1307 1395 4.455877 CACAACAAAGTTAGGGAGATGGAC 59.544 45.833 0.00 0.00 0.00 4.02
1436 1538 0.043566 CATCGATCTTCAAGTGCGCG 60.044 55.000 0.00 0.00 0.00 6.86
1457 1560 3.557054 GGGAGTACAAGAACATCACAGCA 60.557 47.826 0.00 0.00 0.00 4.41
1464 1567 2.537143 ACGGAGGGAGTACAAGAACAT 58.463 47.619 0.00 0.00 0.00 2.71
1473 1576 5.954150 ACTATAAAAGTGAACGGAGGGAGTA 59.046 40.000 0.00 0.00 36.93 2.59
1474 1577 4.776308 ACTATAAAAGTGAACGGAGGGAGT 59.224 41.667 0.00 0.00 36.93 3.85
1475 1578 5.340439 ACTATAAAAGTGAACGGAGGGAG 57.660 43.478 0.00 0.00 36.93 4.30
1476 1579 5.622914 CGAACTATAAAAGTGAACGGAGGGA 60.623 44.000 0.00 0.00 38.88 4.20
1477 1580 4.565564 CGAACTATAAAAGTGAACGGAGGG 59.434 45.833 0.00 0.00 38.88 4.30
1478 1581 5.166398 ACGAACTATAAAAGTGAACGGAGG 58.834 41.667 0.00 0.00 38.88 4.30
1479 1582 6.701432 AACGAACTATAAAAGTGAACGGAG 57.299 37.500 0.00 0.00 38.88 4.63
1480 1583 6.700960 TGAAACGAACTATAAAAGTGAACGGA 59.299 34.615 0.00 0.00 38.88 4.69
1481 1584 6.879962 TGAAACGAACTATAAAAGTGAACGG 58.120 36.000 0.00 0.00 38.88 4.44
1482 1585 7.734726 GTCTGAAACGAACTATAAAAGTGAACG 59.265 37.037 0.00 0.00 38.88 3.95
1484 1587 8.651391 TGTCTGAAACGAACTATAAAAGTGAA 57.349 30.769 0.00 0.00 38.88 3.18
1485 1588 8.545420 GTTGTCTGAAACGAACTATAAAAGTGA 58.455 33.333 0.00 0.00 38.88 3.41
1487 1590 8.548721 CAGTTGTCTGAAACGAACTATAAAAGT 58.451 33.333 0.00 0.00 43.76 2.66
1490 1593 6.480651 TGCAGTTGTCTGAAACGAACTATAAA 59.519 34.615 0.00 0.00 43.76 1.40
1491 1594 5.986741 TGCAGTTGTCTGAAACGAACTATAA 59.013 36.000 0.00 0.00 43.76 0.98
1493 1596 4.377021 TGCAGTTGTCTGAAACGAACTAT 58.623 39.130 0.00 0.00 43.76 2.12
1494 1597 3.787785 TGCAGTTGTCTGAAACGAACTA 58.212 40.909 0.00 0.00 43.76 2.24
1495 1598 2.609459 CTGCAGTTGTCTGAAACGAACT 59.391 45.455 5.25 0.00 43.76 3.01
1496 1599 2.607635 TCTGCAGTTGTCTGAAACGAAC 59.392 45.455 14.67 0.00 43.76 3.95
1497 1600 2.899976 TCTGCAGTTGTCTGAAACGAA 58.100 42.857 14.67 0.00 43.76 3.85
1498 1601 2.595124 TCTGCAGTTGTCTGAAACGA 57.405 45.000 14.67 0.00 43.76 3.85
1499 1602 2.802247 TCATCTGCAGTTGTCTGAAACG 59.198 45.455 21.24 0.00 43.76 3.60
1500 1603 3.364764 GCTCATCTGCAGTTGTCTGAAAC 60.365 47.826 21.24 7.09 43.76 2.78
1502 1605 2.038164 AGCTCATCTGCAGTTGTCTGAA 59.962 45.455 21.24 4.23 43.76 3.02
1503 1606 1.622312 AGCTCATCTGCAGTTGTCTGA 59.378 47.619 21.24 12.81 43.76 3.27
1504 1607 2.096220 AGCTCATCTGCAGTTGTCTG 57.904 50.000 21.24 14.49 43.87 3.51
1505 1608 4.484537 AATAGCTCATCTGCAGTTGTCT 57.515 40.909 21.24 19.80 34.99 3.41
1508 1611 4.103357 GCAAAATAGCTCATCTGCAGTTG 58.897 43.478 17.14 17.14 34.99 3.16
1509 1612 3.760151 TGCAAAATAGCTCATCTGCAGTT 59.240 39.130 14.67 1.65 35.02 3.16
1510 1613 3.128242 GTGCAAAATAGCTCATCTGCAGT 59.872 43.478 14.67 0.00 40.22 4.40
1511 1614 3.488721 GGTGCAAAATAGCTCATCTGCAG 60.489 47.826 7.63 7.63 40.22 4.41
1512 1615 2.424601 GGTGCAAAATAGCTCATCTGCA 59.575 45.455 8.83 8.83 37.46 4.41
1513 1616 2.223665 GGGTGCAAAATAGCTCATCTGC 60.224 50.000 0.00 0.00 34.99 4.26
1514 1617 3.066342 CAGGGTGCAAAATAGCTCATCTG 59.934 47.826 0.00 0.00 34.99 2.90
1519 1622 2.421424 CAGACAGGGTGCAAAATAGCTC 59.579 50.000 0.00 0.00 34.99 4.09
1520 1623 2.040278 TCAGACAGGGTGCAAAATAGCT 59.960 45.455 0.00 0.00 34.99 3.32
1522 1625 5.047802 ACATTTCAGACAGGGTGCAAAATAG 60.048 40.000 0.00 0.00 0.00 1.73
1523 1626 4.832266 ACATTTCAGACAGGGTGCAAAATA 59.168 37.500 0.00 0.00 0.00 1.40
1525 1628 3.030291 ACATTTCAGACAGGGTGCAAAA 58.970 40.909 0.00 0.00 0.00 2.44
1526 1629 2.622942 GACATTTCAGACAGGGTGCAAA 59.377 45.455 0.00 0.00 0.00 3.68
1527 1630 2.158623 AGACATTTCAGACAGGGTGCAA 60.159 45.455 0.00 0.00 0.00 4.08
1529 1632 2.191128 AGACATTTCAGACAGGGTGC 57.809 50.000 0.00 0.00 0.00 5.01
1531 1634 4.392940 CTTGAAGACATTTCAGACAGGGT 58.607 43.478 0.00 0.00 0.00 4.34
1533 1636 3.190118 GCCTTGAAGACATTTCAGACAGG 59.810 47.826 0.00 3.03 30.77 4.00
1534 1637 3.190118 GGCCTTGAAGACATTTCAGACAG 59.810 47.826 0.00 0.00 0.00 3.51
1537 1640 3.795688 AGGCCTTGAAGACATTTCAGA 57.204 42.857 0.00 0.00 0.00 3.27
1538 1641 7.630242 TTATAAGGCCTTGAAGACATTTCAG 57.370 36.000 28.77 0.00 0.00 3.02
1539 1642 8.415950 TTTTATAAGGCCTTGAAGACATTTCA 57.584 30.769 28.77 3.15 0.00 2.69
1540 1643 8.739972 TCTTTTATAAGGCCTTGAAGACATTTC 58.260 33.333 28.77 0.00 32.02 2.17
1541 1644 8.650143 TCTTTTATAAGGCCTTGAAGACATTT 57.350 30.769 28.77 0.00 32.02 2.32
1542 1645 8.109634 TCTCTTTTATAAGGCCTTGAAGACATT 58.890 33.333 28.77 0.00 32.02 2.71
1543 1646 7.633789 TCTCTTTTATAAGGCCTTGAAGACAT 58.366 34.615 28.77 14.50 32.02 3.06
1544 1647 7.016153 TCTCTTTTATAAGGCCTTGAAGACA 57.984 36.000 28.77 15.13 32.02 3.41
1547 1650 7.607991 TCTGTTCTCTTTTATAAGGCCTTGAAG 59.392 37.037 28.77 22.59 32.02 3.02
1549 1652 7.016153 TCTGTTCTCTTTTATAAGGCCTTGA 57.984 36.000 28.77 14.14 32.02 3.02
1550 1653 6.317391 CCTCTGTTCTCTTTTATAAGGCCTTG 59.683 42.308 28.77 10.18 32.02 3.61
1551 1654 6.418946 CCTCTGTTCTCTTTTATAAGGCCTT 58.581 40.000 24.18 24.18 32.02 4.35
1552 1655 5.104318 CCCTCTGTTCTCTTTTATAAGGCCT 60.104 44.000 0.00 0.00 32.02 5.19
1553 1656 5.104485 TCCCTCTGTTCTCTTTTATAAGGCC 60.104 44.000 0.00 0.00 32.02 5.19
1554 1657 5.990668 TCCCTCTGTTCTCTTTTATAAGGC 58.009 41.667 0.00 0.00 32.02 4.35
1555 1658 7.189079 ACTCCCTCTGTTCTCTTTTATAAGG 57.811 40.000 0.00 0.00 32.02 2.69
1556 1659 9.757227 CATACTCCCTCTGTTCTCTTTTATAAG 57.243 37.037 0.00 0.00 0.00 1.73
1557 1660 9.488762 TCATACTCCCTCTGTTCTCTTTTATAA 57.511 33.333 0.00 0.00 0.00 0.98
1558 1661 9.488762 TTCATACTCCCTCTGTTCTCTTTTATA 57.511 33.333 0.00 0.00 0.00 0.98
1559 1662 7.979786 TCATACTCCCTCTGTTCTCTTTTAT 57.020 36.000 0.00 0.00 0.00 1.40
1560 1663 7.792364 TTCATACTCCCTCTGTTCTCTTTTA 57.208 36.000 0.00 0.00 0.00 1.52
1561 1664 6.688073 TTCATACTCCCTCTGTTCTCTTTT 57.312 37.500 0.00 0.00 0.00 2.27
1562 1665 6.441924 TCATTCATACTCCCTCTGTTCTCTTT 59.558 38.462 0.00 0.00 0.00 2.52
1565 1668 5.860941 TCATTCATACTCCCTCTGTTCTC 57.139 43.478 0.00 0.00 0.00 2.87
1566 1669 5.454471 GCATCATTCATACTCCCTCTGTTCT 60.454 44.000 0.00 0.00 0.00 3.01
1567 1670 4.754114 GCATCATTCATACTCCCTCTGTTC 59.246 45.833 0.00 0.00 0.00 3.18
1568 1671 4.445448 GGCATCATTCATACTCCCTCTGTT 60.445 45.833 0.00 0.00 0.00 3.16
1569 1672 3.072184 GGCATCATTCATACTCCCTCTGT 59.928 47.826 0.00 0.00 0.00 3.41
1570 1673 3.558746 GGGCATCATTCATACTCCCTCTG 60.559 52.174 0.00 0.00 0.00 3.35
1571 1674 2.641815 GGGCATCATTCATACTCCCTCT 59.358 50.000 0.00 0.00 0.00 3.69
1572 1675 2.613977 CGGGCATCATTCATACTCCCTC 60.614 54.545 0.00 0.00 0.00 4.30
1573 1676 1.349026 CGGGCATCATTCATACTCCCT 59.651 52.381 0.00 0.00 0.00 4.20
1574 1677 1.072331 ACGGGCATCATTCATACTCCC 59.928 52.381 0.00 0.00 0.00 4.30
1575 1678 2.550830 ACGGGCATCATTCATACTCC 57.449 50.000 0.00 0.00 0.00 3.85
1577 1680 5.241506 CCAATTAACGGGCATCATTCATACT 59.758 40.000 0.00 0.00 0.00 2.12
1614 1820 3.432326 GGACCTTGGCGAATCTCTTACAT 60.432 47.826 0.00 0.00 0.00 2.29
1636 1843 2.194201 AAGTGTACAATTCCACCGGG 57.806 50.000 6.32 0.00 31.88 5.73
1638 1845 3.938963 AGCATAAGTGTACAATTCCACCG 59.061 43.478 12.49 0.00 31.88 4.94
1667 1897 0.946528 GCACACAACTGCACAGATCA 59.053 50.000 4.31 0.00 37.11 2.92
1668 1898 0.946528 TGCACACAACTGCACAGATC 59.053 50.000 4.31 0.00 42.36 2.75
1708 1949 1.676967 GAGGGGGACAAGCTGCAAG 60.677 63.158 1.02 0.00 0.00 4.01
1721 1962 5.301805 AGCATAACCAAATTAATTCGAGGGG 59.698 40.000 14.91 9.05 0.00 4.79
1722 1963 6.391227 AGCATAACCAAATTAATTCGAGGG 57.609 37.500 14.91 10.88 0.00 4.30
1724 1965 7.432252 GGTCAAGCATAACCAAATTAATTCGAG 59.568 37.037 0.10 0.00 35.53 4.04
1749 1990 2.401583 TGTCACCTGAATCGGAATGG 57.598 50.000 0.00 0.00 0.00 3.16
1899 2167 3.446161 AGTACGCACAGCTAGGAATTGTA 59.554 43.478 0.00 0.00 0.00 2.41
1917 2185 6.873076 ACACTACAGTCTACACTCTACAGTAC 59.127 42.308 0.00 0.00 0.00 2.73
1958 2230 5.404946 TGCTACTTGGTAAGACATTACGAC 58.595 41.667 0.00 0.00 41.94 4.34
2021 2293 6.863126 CCATTAAAATCTGGTTGAACTGTCAC 59.137 38.462 0.00 0.00 31.90 3.67
2030 2302 6.575267 TCATGCATCCATTAAAATCTGGTTG 58.425 36.000 0.00 1.15 35.99 3.77
2086 2358 6.259550 AGTTACTTGTCAGGAATGATTTGC 57.740 37.500 0.00 0.00 0.00 3.68
2197 2469 1.795286 GAAAGAGAGGCACACAAGACG 59.205 52.381 0.00 0.00 0.00 4.18
2201 2473 5.129634 TGTTAATGAAAGAGAGGCACACAA 58.870 37.500 0.00 0.00 0.00 3.33
2203 2475 5.392380 CCATGTTAATGAAAGAGAGGCACAC 60.392 44.000 0.00 0.00 35.67 3.82
2295 2572 6.503524 TGAACATAAAAACAGAGCAAACCTC 58.496 36.000 0.00 0.00 41.07 3.85
2297 2574 6.198966 CACTGAACATAAAAACAGAGCAAACC 59.801 38.462 0.00 0.00 34.88 3.27
2309 2586 2.954989 TGGCACAGCACTGAACATAAAA 59.045 40.909 4.31 0.00 0.00 1.52
2311 2588 2.268762 TGGCACAGCACTGAACATAA 57.731 45.000 4.31 0.00 0.00 1.90
2312 2589 1.879380 GTTGGCACAGCACTGAACATA 59.121 47.619 4.31 0.00 42.39 2.29
2332 2609 3.872771 GGGGCAGCAAACAATTGAATATG 59.127 43.478 13.59 6.34 38.94 1.78
2340 2617 1.618343 GTAACTGGGGCAGCAAACAAT 59.382 47.619 0.00 0.00 34.37 2.71
2397 2674 8.679725 ACCTTCTATCTATCTGGTATTCAGGTA 58.320 37.037 0.00 0.00 43.53 3.08
2398 2675 7.453126 CACCTTCTATCTATCTGGTATTCAGGT 59.547 40.741 0.00 0.00 43.53 4.00
2399 2676 7.093552 CCACCTTCTATCTATCTGGTATTCAGG 60.094 44.444 0.00 0.00 43.53 3.86
2400 2677 7.453126 ACCACCTTCTATCTATCTGGTATTCAG 59.547 40.741 0.00 0.00 44.68 3.02
2401 2678 7.306013 ACCACCTTCTATCTATCTGGTATTCA 58.694 38.462 0.00 0.00 0.00 2.57
2402 2679 7.784470 ACCACCTTCTATCTATCTGGTATTC 57.216 40.000 0.00 0.00 0.00 1.75
2403 2680 9.845214 AATACCACCTTCTATCTATCTGGTATT 57.155 33.333 11.65 11.65 43.72 1.89
2425 2702 6.699575 ACATGATCAAAGGGCAGTTAATAC 57.300 37.500 0.00 0.00 0.00 1.89
2458 2735 2.173519 CCTTCTGACCCGGTAAGTGTA 58.826 52.381 0.00 0.00 0.00 2.90
2459 2736 0.974383 CCTTCTGACCCGGTAAGTGT 59.026 55.000 0.00 0.00 0.00 3.55
2460 2737 0.391263 GCCTTCTGACCCGGTAAGTG 60.391 60.000 0.00 0.00 0.00 3.16
2461 2738 0.834687 TGCCTTCTGACCCGGTAAGT 60.835 55.000 0.00 0.00 0.00 2.24
2462 2739 0.541863 ATGCCTTCTGACCCGGTAAG 59.458 55.000 0.00 0.00 0.00 2.34
2465 2742 0.617820 AGTATGCCTTCTGACCCGGT 60.618 55.000 0.00 0.00 0.00 5.28
2467 2744 0.824109 TGAGTATGCCTTCTGACCCG 59.176 55.000 0.00 0.00 0.00 5.28
2484 2794 4.649267 TCTACATGGTTTGGGAACATGA 57.351 40.909 10.72 0.00 42.32 3.07
2513 2823 6.913873 AACACGTTAAGTTCTATGTGTGTT 57.086 33.333 13.60 8.88 42.11 3.32
2527 2837 3.354467 ACAAGGTTTGGGAACACGTTAA 58.646 40.909 0.00 0.00 42.67 2.01
2529 2839 1.842052 ACAAGGTTTGGGAACACGTT 58.158 45.000 0.00 0.00 42.67 3.99
2532 2842 4.202080 GGTTTCTACAAGGTTTGGGAACAC 60.202 45.833 0.00 0.00 42.67 3.32
2534 2844 4.212716 AGGTTTCTACAAGGTTTGGGAAC 58.787 43.478 0.00 0.00 34.96 3.62
2535 2845 4.529716 AGGTTTCTACAAGGTTTGGGAA 57.470 40.909 0.00 0.00 34.12 3.97
2536 2846 4.202493 GGTAGGTTTCTACAAGGTTTGGGA 60.202 45.833 5.99 0.00 45.76 4.37
2537 2847 4.077108 GGTAGGTTTCTACAAGGTTTGGG 58.923 47.826 5.99 0.00 45.76 4.12
2538 2848 4.517832 GTGGTAGGTTTCTACAAGGTTTGG 59.482 45.833 5.99 0.00 45.76 3.28
2539 2849 5.008316 GTGTGGTAGGTTTCTACAAGGTTTG 59.992 44.000 5.99 0.00 45.76 2.93
2540 2850 5.128205 GTGTGGTAGGTTTCTACAAGGTTT 58.872 41.667 5.99 0.00 45.76 3.27
2541 2851 4.164604 TGTGTGGTAGGTTTCTACAAGGTT 59.835 41.667 5.99 0.00 45.76 3.50
2542 2852 3.712733 TGTGTGGTAGGTTTCTACAAGGT 59.287 43.478 5.99 0.00 45.76 3.50
2543 2853 4.062991 GTGTGTGGTAGGTTTCTACAAGG 58.937 47.826 5.99 0.00 45.76 3.61
2544 2854 3.739300 CGTGTGTGGTAGGTTTCTACAAG 59.261 47.826 5.99 0.00 45.76 3.16
2545 2855 3.132646 ACGTGTGTGGTAGGTTTCTACAA 59.867 43.478 5.99 0.00 45.76 2.41
2546 2856 2.694628 ACGTGTGTGGTAGGTTTCTACA 59.305 45.455 5.99 0.00 45.76 2.74
2547 2857 3.375782 ACGTGTGTGGTAGGTTTCTAC 57.624 47.619 0.00 0.00 43.82 2.59
2548 2858 4.216257 GTCTACGTGTGTGGTAGGTTTCTA 59.784 45.833 0.00 0.00 38.29 2.10
2549 2859 3.005155 GTCTACGTGTGTGGTAGGTTTCT 59.995 47.826 0.00 0.00 38.29 2.52
2550 2860 3.243501 TGTCTACGTGTGTGGTAGGTTTC 60.244 47.826 0.00 0.00 38.29 2.78
2551 2861 2.694628 TGTCTACGTGTGTGGTAGGTTT 59.305 45.455 0.00 0.00 38.29 3.27
2552 2862 2.035066 GTGTCTACGTGTGTGGTAGGTT 59.965 50.000 0.00 0.00 38.29 3.50
2553 2863 1.610522 GTGTCTACGTGTGTGGTAGGT 59.389 52.381 0.00 0.00 38.29 3.08
2554 2864 1.884579 AGTGTCTACGTGTGTGGTAGG 59.115 52.381 0.00 0.00 38.29 3.18
2555 2865 3.637998 AAGTGTCTACGTGTGTGGTAG 57.362 47.619 0.00 0.00 38.94 3.18
2556 2866 4.554526 CGTTAAGTGTCTACGTGTGTGGTA 60.555 45.833 0.00 0.00 0.00 3.25
2557 2867 3.709987 GTTAAGTGTCTACGTGTGTGGT 58.290 45.455 0.00 0.00 0.00 4.16
2558 2868 2.722629 CGTTAAGTGTCTACGTGTGTGG 59.277 50.000 0.00 0.00 0.00 4.17
2559 2869 3.365832 ACGTTAAGTGTCTACGTGTGTG 58.634 45.455 0.00 0.00 45.67 3.82
2560 2870 3.698029 ACGTTAAGTGTCTACGTGTGT 57.302 42.857 0.00 0.00 45.67 3.72
2561 2871 3.601211 GCTACGTTAAGTGTCTACGTGTG 59.399 47.826 9.47 4.23 46.66 3.82
2562 2872 3.499918 AGCTACGTTAAGTGTCTACGTGT 59.500 43.478 9.47 0.00 46.66 4.49
2563 2873 3.844657 CAGCTACGTTAAGTGTCTACGTG 59.155 47.826 9.47 2.04 46.66 4.49
2565 2875 4.332186 TCAGCTACGTTAAGTGTCTACG 57.668 45.455 0.00 0.00 40.85 3.51
2566 2876 7.967303 ACTATTTCAGCTACGTTAAGTGTCTAC 59.033 37.037 0.00 0.00 0.00 2.59
2567 2877 8.048534 ACTATTTCAGCTACGTTAAGTGTCTA 57.951 34.615 0.00 0.00 0.00 2.59
2577 2887 4.970662 TCGGTTACTATTTCAGCTACGT 57.029 40.909 0.00 0.00 0.00 3.57
2579 2889 6.270815 TGACATCGGTTACTATTTCAGCTAC 58.729 40.000 0.00 0.00 0.00 3.58
2583 2893 5.902681 TCCTGACATCGGTTACTATTTCAG 58.097 41.667 7.13 7.13 32.26 3.02
2588 2898 9.490379 GAAAATAATCCTGACATCGGTTACTAT 57.510 33.333 0.00 0.00 0.00 2.12
2589 2899 8.479689 TGAAAATAATCCTGACATCGGTTACTA 58.520 33.333 0.00 0.00 0.00 1.82
2647 2957 4.635765 GCACACCTGCAAGAGAAACATATA 59.364 41.667 0.00 0.00 43.62 0.86
2648 2958 3.441572 GCACACCTGCAAGAGAAACATAT 59.558 43.478 0.00 0.00 43.62 1.78
2675 2985 1.519898 TTTTATCGGAGCGTCGGCC 60.520 57.895 0.00 0.00 41.24 6.13
2678 2988 1.846782 CTGAGTTTTATCGGAGCGTCG 59.153 52.381 0.00 0.00 0.00 5.12
2817 3133 3.798202 CCGCCTTCTAAATGTTCTAGCT 58.202 45.455 0.00 0.00 0.00 3.32
2836 3152 0.938713 TACAGGAACACGTTTTGCCG 59.061 50.000 2.05 0.00 0.00 5.69
2845 3161 2.260481 GCTACGCTTCTACAGGAACAC 58.740 52.381 0.00 0.00 0.00 3.32
2868 3184 1.002250 CCGACCGTCTGAACAGTTCG 61.002 60.000 8.80 4.11 0.00 3.95
2898 3214 6.231211 TGGAAACTATGAAAGAGTGGAAGAC 58.769 40.000 0.00 0.00 0.00 3.01
2902 3218 4.943705 GCATGGAAACTATGAAAGAGTGGA 59.056 41.667 0.00 0.00 0.00 4.02
2961 3289 2.699768 CGTGGCGGACATGGCAATT 61.700 57.895 0.00 0.00 46.76 2.32
2982 3310 3.001736 GGCGACATCATCTTTAGCAAGAC 59.998 47.826 0.00 0.00 42.05 3.01
3001 3335 1.749153 AACAAATGTTTTCGACGGCG 58.251 45.000 2.87 2.87 33.93 6.46
3030 3368 1.321148 CGCGGCATTGCAAAAATGTAG 59.679 47.619 11.39 0.00 34.15 2.74
3058 3396 0.784778 CGACGCACTTGTTCCTTCTC 59.215 55.000 0.00 0.00 0.00 2.87
3083 3421 1.275010 CCACCCCAACCAAACTAATGC 59.725 52.381 0.00 0.00 0.00 3.56
3099 3437 6.657541 TGAACTTTTATTACATGAGACCCACC 59.342 38.462 0.00 0.00 0.00 4.61
3104 3442 9.994432 CAAGGATGAACTTTTATTACATGAGAC 57.006 33.333 0.00 0.00 0.00 3.36
3123 3461 4.861102 AAAAAGAACCAGAGCAAGGATG 57.139 40.909 0.00 0.00 0.00 3.51
3185 3523 6.708949 CGGTATATGTTAATTGCTACCCTGTT 59.291 38.462 0.00 0.00 0.00 3.16
3206 3544 2.677836 GCATGAAGAAACAGATGCGGTA 59.322 45.455 0.00 0.00 0.00 4.02
3207 3545 1.470098 GCATGAAGAAACAGATGCGGT 59.530 47.619 0.00 0.00 0.00 5.68
3208 3546 1.469703 TGCATGAAGAAACAGATGCGG 59.530 47.619 0.00 0.00 37.80 5.69
3209 3547 2.161012 AGTGCATGAAGAAACAGATGCG 59.839 45.455 0.00 0.00 37.80 4.73
3248 3586 3.322254 AGAAACACTCGTGGATCACTTCT 59.678 43.478 1.77 0.00 34.19 2.85
3261 3599 5.561725 GCTTTCACATCCAGAAGAAACACTC 60.562 44.000 0.00 0.00 0.00 3.51
3263 3601 4.540824 GCTTTCACATCCAGAAGAAACAC 58.459 43.478 0.00 0.00 0.00 3.32
3265 3603 3.057245 GGGCTTTCACATCCAGAAGAAAC 60.057 47.826 0.00 0.00 0.00 2.78
3267 3605 2.108075 TGGGCTTTCACATCCAGAAGAA 59.892 45.455 0.00 0.00 0.00 2.52
3268 3606 1.704628 TGGGCTTTCACATCCAGAAGA 59.295 47.619 0.00 0.00 0.00 2.87
3271 3609 0.038166 GGTGGGCTTTCACATCCAGA 59.962 55.000 7.45 0.00 39.27 3.86
3272 3610 0.038744 AGGTGGGCTTTCACATCCAG 59.961 55.000 7.45 0.00 39.27 3.86
3273 3611 0.482446 AAGGTGGGCTTTCACATCCA 59.518 50.000 7.45 0.00 39.27 3.41
3274 3612 1.273327 CAAAGGTGGGCTTTCACATCC 59.727 52.381 7.45 0.00 39.27 3.51
3275 3613 1.337167 GCAAAGGTGGGCTTTCACATC 60.337 52.381 7.45 0.00 39.27 3.06
3276 3614 0.681175 GCAAAGGTGGGCTTTCACAT 59.319 50.000 7.45 0.00 39.27 3.21
3277 3615 0.396974 AGCAAAGGTGGGCTTTCACA 60.397 50.000 7.45 0.00 36.92 3.58
3278 3616 0.032540 CAGCAAAGGTGGGCTTTCAC 59.967 55.000 0.00 0.00 38.56 3.18
3279 3617 1.747325 GCAGCAAAGGTGGGCTTTCA 61.747 55.000 0.00 0.00 38.56 2.69
3280 3618 1.005748 GCAGCAAAGGTGGGCTTTC 60.006 57.895 0.00 0.00 38.56 2.62
3282 3620 2.123338 TGCAGCAAAGGTGGGCTT 60.123 55.556 0.00 0.00 38.56 4.35
3283 3621 2.599578 CTGCAGCAAAGGTGGGCT 60.600 61.111 0.00 0.00 42.06 5.19
3285 3623 2.270986 GGTCTGCAGCAAAGGTGGG 61.271 63.158 9.47 0.00 0.00 4.61
3286 3624 0.896940 ATGGTCTGCAGCAAAGGTGG 60.897 55.000 9.47 0.00 32.53 4.61
3287 3625 0.963962 AATGGTCTGCAGCAAAGGTG 59.036 50.000 9.47 0.00 32.53 4.00
3288 3626 1.342174 CAAATGGTCTGCAGCAAAGGT 59.658 47.619 9.47 0.00 32.53 3.50
3290 3628 1.000506 AGCAAATGGTCTGCAGCAAAG 59.999 47.619 9.47 0.00 42.48 2.77
3291 3629 1.042229 AGCAAATGGTCTGCAGCAAA 58.958 45.000 9.47 0.00 42.48 3.68
3292 3630 1.042229 AAGCAAATGGTCTGCAGCAA 58.958 45.000 9.47 0.00 42.48 3.91
3295 3633 3.806591 CCAAGCAAATGGTCTGCAG 57.193 52.632 7.63 7.63 42.48 4.41
3312 3650 3.252458 GCAATATCCGGTTATGGTGAACC 59.748 47.826 0.00 0.00 44.72 3.62
3314 3652 3.482436 GGCAATATCCGGTTATGGTGAA 58.518 45.455 0.00 0.00 0.00 3.18
3315 3653 2.224670 GGGCAATATCCGGTTATGGTGA 60.225 50.000 0.00 0.00 0.00 4.02
3316 3654 2.159382 GGGCAATATCCGGTTATGGTG 58.841 52.381 0.00 0.48 0.00 4.17
3317 3655 1.271163 CGGGCAATATCCGGTTATGGT 60.271 52.381 0.00 0.00 43.45 3.55
3318 3656 1.448985 CGGGCAATATCCGGTTATGG 58.551 55.000 0.00 1.30 43.45 2.74
3353 3691 8.454106 GCTCACATGAATTGTACTATGAACTTT 58.546 33.333 0.00 0.00 36.57 2.66
3354 3692 7.826252 AGCTCACATGAATTGTACTATGAACTT 59.174 33.333 0.00 0.00 36.57 2.66
3355 3693 7.334090 AGCTCACATGAATTGTACTATGAACT 58.666 34.615 0.00 0.00 36.57 3.01
3356 3694 7.545362 AGCTCACATGAATTGTACTATGAAC 57.455 36.000 0.00 0.00 36.57 3.18
3357 3695 8.453320 CAAAGCTCACATGAATTGTACTATGAA 58.547 33.333 0.00 0.00 36.57 2.57
3358 3696 7.066163 CCAAAGCTCACATGAATTGTACTATGA 59.934 37.037 0.00 0.00 36.57 2.15
3359 3697 7.148188 ACCAAAGCTCACATGAATTGTACTATG 60.148 37.037 0.00 0.00 36.57 2.23
3361 3699 6.149308 CACCAAAGCTCACATGAATTGTACTA 59.851 38.462 0.00 0.00 36.57 1.82
3362 3700 5.048504 CACCAAAGCTCACATGAATTGTACT 60.049 40.000 0.00 0.00 36.57 2.73
3363 3701 5.048782 TCACCAAAGCTCACATGAATTGTAC 60.049 40.000 0.00 0.00 36.57 2.90
3364 3702 5.069318 TCACCAAAGCTCACATGAATTGTA 58.931 37.500 0.00 0.00 36.57 2.41
3366 3704 4.508461 TCACCAAAGCTCACATGAATTG 57.492 40.909 0.00 0.00 0.00 2.32
3367 3705 4.828939 TCTTCACCAAAGCTCACATGAATT 59.171 37.500 0.00 0.00 34.76 2.17
3369 3707 3.819368 TCTTCACCAAAGCTCACATGAA 58.181 40.909 0.00 0.00 34.76 2.57
3371 3709 3.304928 GGTTCTTCACCAAAGCTCACATG 60.305 47.826 0.00 0.00 46.42 3.21
3373 3711 2.297701 GGTTCTTCACCAAAGCTCACA 58.702 47.619 0.00 0.00 46.42 3.58
3383 3721 0.322546 AAGGCGATGGGTTCTTCACC 60.323 55.000 0.00 0.00 46.46 4.02
3384 3722 1.200020 CAAAGGCGATGGGTTCTTCAC 59.800 52.381 0.00 0.00 0.00 3.18
3385 3723 1.073125 TCAAAGGCGATGGGTTCTTCA 59.927 47.619 0.00 0.00 0.00 3.02
3386 3724 1.821216 TCAAAGGCGATGGGTTCTTC 58.179 50.000 0.00 0.00 0.00 2.87
3388 3726 3.496870 GGATATCAAAGGCGATGGGTTCT 60.497 47.826 4.83 0.00 0.00 3.01
3389 3727 2.814336 GGATATCAAAGGCGATGGGTTC 59.186 50.000 4.83 0.00 0.00 3.62
3391 3729 1.073923 GGGATATCAAAGGCGATGGGT 59.926 52.381 4.83 0.00 0.00 4.51
3392 3730 1.073763 TGGGATATCAAAGGCGATGGG 59.926 52.381 4.83 0.00 0.00 4.00
3393 3731 2.554032 GTTGGGATATCAAAGGCGATGG 59.446 50.000 4.83 0.00 0.00 3.51
3394 3732 2.554032 GGTTGGGATATCAAAGGCGATG 59.446 50.000 4.83 0.00 0.00 3.84
3396 3734 1.562008 TGGTTGGGATATCAAAGGCGA 59.438 47.619 4.83 0.00 0.00 5.54
3398 3736 2.031870 GGTGGTTGGGATATCAAAGGC 58.968 52.381 4.83 0.00 0.00 4.35
3399 3737 2.244769 AGGGTGGTTGGGATATCAAAGG 59.755 50.000 4.83 0.00 0.00 3.11
3400 3738 3.669939 AGGGTGGTTGGGATATCAAAG 57.330 47.619 4.83 0.00 0.00 2.77
3401 3739 3.335183 TGAAGGGTGGTTGGGATATCAAA 59.665 43.478 4.83 0.00 0.00 2.69
3404 3742 3.288092 GTTGAAGGGTGGTTGGGATATC 58.712 50.000 0.00 0.00 0.00 1.63
3405 3743 2.652348 TGTTGAAGGGTGGTTGGGATAT 59.348 45.455 0.00 0.00 0.00 1.63
3406 3744 2.066592 TGTTGAAGGGTGGTTGGGATA 58.933 47.619 0.00 0.00 0.00 2.59
3407 3745 0.856982 TGTTGAAGGGTGGTTGGGAT 59.143 50.000 0.00 0.00 0.00 3.85
3408 3746 0.106419 GTGTTGAAGGGTGGTTGGGA 60.106 55.000 0.00 0.00 0.00 4.37
3409 3747 1.452145 CGTGTTGAAGGGTGGTTGGG 61.452 60.000 0.00 0.00 0.00 4.12
3410 3748 1.452145 CCGTGTTGAAGGGTGGTTGG 61.452 60.000 0.00 0.00 0.00 3.77
3411 3749 2.029743 CCGTGTTGAAGGGTGGTTG 58.970 57.895 0.00 0.00 0.00 3.77
3414 3752 1.528309 AAGCCGTGTTGAAGGGTGG 60.528 57.895 0.00 0.00 38.38 4.61
3417 3755 0.535102 AGTCAAGCCGTGTTGAAGGG 60.535 55.000 0.00 0.00 38.17 3.95
3418 3756 0.588252 CAGTCAAGCCGTGTTGAAGG 59.412 55.000 0.00 0.00 38.17 3.46
3419 3757 0.040958 GCAGTCAAGCCGTGTTGAAG 60.041 55.000 0.00 0.00 38.17 3.02
3420 3758 0.463654 AGCAGTCAAGCCGTGTTGAA 60.464 50.000 0.00 0.00 38.17 2.69
3421 3759 0.463654 AAGCAGTCAAGCCGTGTTGA 60.464 50.000 0.00 0.00 33.95 3.18
3422 3760 0.040958 GAAGCAGTCAAGCCGTGTTG 60.041 55.000 0.00 0.00 34.23 3.33
3423 3761 1.498865 CGAAGCAGTCAAGCCGTGTT 61.499 55.000 0.00 0.00 34.23 3.32
3424 3762 1.956170 CGAAGCAGTCAAGCCGTGT 60.956 57.895 0.00 0.00 34.23 4.49
3437 3775 2.154854 TCATGCCTACATAGCGAAGC 57.845 50.000 0.00 0.00 46.18 3.86
3438 3776 3.492383 CAGTTCATGCCTACATAGCGAAG 59.508 47.826 0.00 0.00 33.67 3.79
3439 3777 3.457234 CAGTTCATGCCTACATAGCGAA 58.543 45.455 0.00 0.00 33.67 4.70
3440 3778 2.224042 CCAGTTCATGCCTACATAGCGA 60.224 50.000 0.00 0.00 33.67 4.93
3441 3779 2.138320 CCAGTTCATGCCTACATAGCG 58.862 52.381 0.00 0.00 33.67 4.26
3442 3780 3.199880 ACCAGTTCATGCCTACATAGC 57.800 47.619 0.00 0.00 33.67 2.97
3443 3781 4.345257 AGGTACCAGTTCATGCCTACATAG 59.655 45.833 15.94 0.00 33.67 2.23
3444 3782 4.295201 AGGTACCAGTTCATGCCTACATA 58.705 43.478 15.94 0.00 33.67 2.29
3446 3784 2.546899 AGGTACCAGTTCATGCCTACA 58.453 47.619 15.94 0.00 0.00 2.74
3447 3785 3.490419 CGTAGGTACCAGTTCATGCCTAC 60.490 52.174 15.94 10.30 42.80 3.18
3448 3786 2.691526 CGTAGGTACCAGTTCATGCCTA 59.308 50.000 15.94 0.00 0.00 3.93
3450 3788 1.935933 CGTAGGTACCAGTTCATGCC 58.064 55.000 15.94 0.00 0.00 4.40
3485 4552 7.121611 CCCGATGGTTACTAACTAATTGGTTTT 59.878 37.037 12.75 3.43 32.00 2.43
3490 4557 4.514066 GGCCCGATGGTTACTAACTAATTG 59.486 45.833 0.00 0.00 0.00 2.32
3521 4653 0.675837 GCCGGACAAAACCTAGGTCC 60.676 60.000 16.64 10.78 46.01 4.46
3522 4654 1.017701 CGCCGGACAAAACCTAGGTC 61.018 60.000 16.64 1.36 0.00 3.85
3529 4661 1.322040 CAACAAAACGCCGGACAAAAC 59.678 47.619 5.05 0.00 0.00 2.43
3561 4693 1.673665 GGCAGCTGACTCAACCCTG 60.674 63.158 20.43 0.00 0.00 4.45
3580 4712 1.862201 TGGCGTACAATAACATAGCGC 59.138 47.619 0.00 0.00 42.20 5.92
3582 4714 3.117794 TCGTGGCGTACAATAACATAGC 58.882 45.455 0.00 0.00 0.00 2.97
3587 4719 2.346545 GTCCTTCGTGGCGTACAATAAC 59.653 50.000 0.00 0.00 35.26 1.89
3593 4725 3.177249 GCGTCCTTCGTGGCGTAC 61.177 66.667 12.14 0.00 42.13 3.67
3608 4740 1.392589 AGAACATATTTGCCCCTGCG 58.607 50.000 0.00 0.00 41.78 5.18
3610 4742 5.178061 GGAAAAAGAACATATTTGCCCCTG 58.822 41.667 0.00 0.00 29.23 4.45
3631 4763 8.380742 AGTAGATCAAAATAGAAACTCTGGGA 57.619 34.615 0.00 0.00 0.00 4.37
3708 4840 1.035385 GGCAATACACCTTTCCCCCG 61.035 60.000 0.00 0.00 0.00 5.73
3710 4842 0.686441 GGGGCAATACACCTTTCCCC 60.686 60.000 0.00 0.00 45.65 4.81
3715 4847 0.623723 ATGTCGGGGCAATACACCTT 59.376 50.000 0.00 0.00 0.00 3.50
3727 4859 1.340017 ACACCCTGAAATGATGTCGGG 60.340 52.381 3.29 3.29 40.71 5.14
3740 4872 1.004918 GTCAGTTCCCGACACCCTG 60.005 63.158 0.00 0.00 33.43 4.45
3741 4873 2.214920 GGTCAGTTCCCGACACCCT 61.215 63.158 0.00 0.00 34.97 4.34
3754 4886 2.420043 ACGGTTGGACACGGTCAG 59.580 61.111 6.41 0.00 33.80 3.51
3762 4894 1.301479 GTGGGAGTGACGGTTGGAC 60.301 63.158 0.00 0.00 0.00 4.02
3769 4901 4.065281 GGGACGGTGGGAGTGACG 62.065 72.222 0.00 0.00 0.00 4.35
3779 4911 1.396607 GGCCTTGTTTTTGGGACGGT 61.397 55.000 0.00 0.00 0.00 4.83
3781 4913 1.611519 TAGGCCTTGTTTTTGGGACG 58.388 50.000 12.58 0.00 32.47 4.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.