AutoCloner

Multiple sequence alignment - TraesCS6B01G028300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS6B01G028300	chr6B	100.000	2636	0	0	1	2636	16995335	16997970	0.000000e+00	4868
1	TraesCS6B01G028300	chr6B	90.691	1461	107	10	469	1927	16628163	16629596	0.000000e+00	1917
2	TraesCS6B01G028300	chr6B	90.623	1461	108	10	469	1927	16683341	16684774	0.000000e+00	1912
3	TraesCS6B01G028300	chr6B	81.894	1077	177	11	560	1630	16547440	16546376	0.000000e+00	893
4	TraesCS6B01G028300	chr6B	85.298	721	63	13	1932	2636	16640934	16641627	0.000000e+00	704
5	TraesCS6B01G028300	chr6B	85.298	721	63	12	1932	2636	16697351	16698044	0.000000e+00	704
6	TraesCS6B01G028300	chr6B	82.435	501	54	15	2	468	248407014	248407514	8.780000e-110	407
7	TraesCS6B01G028300	chr6B	88.393	112	13	0	2242	2353	17217120	17217231	4.580000e-28	135
8	TraesCS6B01G028300	chr6B	85.965	114	12	3	2242	2353	17220797	17220908	4.610000e-23	119
9	TraesCS6B01G028300	chr6A	91.345	2126	170	7	519	2636	9946606	9948725	0.000000e+00	2894
10	TraesCS6B01G028300	chr6A	91.041	2132	171	10	519	2636	9855897	9858022	0.000000e+00	2861
11	TraesCS6B01G028300	chr6A	81.533	1083	180	13	555	1630	9519561	9520630	0.000000e+00	874
12	TraesCS6B01G028300	chr6A	85.263	475	58	11	2	468	377997836	377997366	1.840000e-131	479
13	TraesCS6B01G028300	chr6A	81.102	508	54	19	2	468	207389906	207390412	4.140000e-98	368
14	TraesCS6B01G028300	chr6D	89.647	2183	156	22	469	2636	9114027	9116154	0.000000e+00	2715
15	TraesCS6B01G028300	chr6D	82.413	1086	166	19	557	1630	9027231	9028303	0.000000e+00	924
16	TraesCS6B01G028300	chr6D	79.179	1047	190	17	593	1630	9215843	9216870	0.000000e+00	701
17	TraesCS6B01G028300	chr6D	86.929	482	47	11	2	468	266509038	266508558	6.460000e-146	527
18	TraesCS6B01G028300	chrUn	89.031	784	62	12	469	1252	359223459	359224218	0.000000e+00	950
19	TraesCS6B01G028300	chr1D	86.441	472	55	7	3	468	70625181	70624713	2.340000e-140	508
20	TraesCS6B01G028300	chr5D	86.510	467	41	14	2	449	282687495	282687958	6.550000e-136	494
21	TraesCS6B01G028300	chr2D	84.400	500	44	11	2	468	95177434	95177932	6.650000e-126	460
22	TraesCS6B01G028300	chr4B	84.067	477	58	17	2	466	616074637	616074167	6.690000e-121	444
23	TraesCS6B01G028300	chr2A	81.132	477	73	14	2	468	764652843	764652374	1.490000e-97	366
24	TraesCS6B01G028300	chr7B	79.749	479	82	11	2	468	399045258	399045733	1.510000e-87	333
25	TraesCS6B01G028300	chr4D	78.144	485	88	17	2	474	245209268	245209746	2.570000e-75	292

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS6B01G028300	chr6B	16995335	16997970	2635	False	4868	4868	100.000	1	2636	1	chr6B.!!$F5	2635
1	TraesCS6B01G028300	chr6B	16628163	16629596	1433	False	1917	1917	90.691	469	1927	1	chr6B.!!$F1	1458
2	TraesCS6B01G028300	chr6B	16683341	16684774	1433	False	1912	1912	90.623	469	1927	1	chr6B.!!$F3	1458
3	TraesCS6B01G028300	chr6B	16546376	16547440	1064	True	893	893	81.894	560	1630	1	chr6B.!!$R1	1070
4	TraesCS6B01G028300	chr6B	16640934	16641627	693	False	704	704	85.298	1932	2636	1	chr6B.!!$F2	704
5	TraesCS6B01G028300	chr6B	16697351	16698044	693	False	704	704	85.298	1932	2636	1	chr6B.!!$F4	704
6	TraesCS6B01G028300	chr6B	248407014	248407514	500	False	407	407	82.435	2	468	1	chr6B.!!$F6	466
7	TraesCS6B01G028300	chr6A	9946606	9948725	2119	False	2894	2894	91.345	519	2636	1	chr6A.!!$F3	2117
8	TraesCS6B01G028300	chr6A	9855897	9858022	2125	False	2861	2861	91.041	519	2636	1	chr6A.!!$F2	2117
9	TraesCS6B01G028300	chr6A	9519561	9520630	1069	False	874	874	81.533	555	1630	1	chr6A.!!$F1	1075
10	TraesCS6B01G028300	chr6A	207389906	207390412	506	False	368	368	81.102	2	468	1	chr6A.!!$F4	466
11	TraesCS6B01G028300	chr6D	9114027	9116154	2127	False	2715	2715	89.647	469	2636	1	chr6D.!!$F2	2167
12	TraesCS6B01G028300	chr6D	9027231	9028303	1072	False	924	924	82.413	557	1630	1	chr6D.!!$F1	1073
13	TraesCS6B01G028300	chr6D	9215843	9216870	1027	False	701	701	79.179	593	1630	1	chr6D.!!$F3	1037
14	TraesCS6B01G028300	chrUn	359223459	359224218	759	False	950	950	89.031	469	1252	1	chrUn.!!$F1	783

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
219	252	0.853586	TGGGCCCCCTCTGGTATTTT	60.854	55.0	22.27	0.0	36.94	1.82	F
1209	1263	0.673985	CGGTGGCTATCCTGAATCGA	59.326	55.0	0.00	0.0	0.00	3.59	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1222	1276	0.470766	TTTAGTTGTGGCACCTCCGT	59.529	50.000	16.26	0.0	37.8	4.69	R
2380	2452	3.135712	ACCATCGGCCTAATTATGTGTGA	59.864	43.478	0.00	0.0	0.0	3.58	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
30	31	3.781307	CCCGGCGGAATCACTCCA	61.781	66.667	30.79	0.00	45.74	3.86
82	85	4.116328	CTCGAGACGGGCGCTTCA	62.116	66.667	6.58	0.00	0.00	3.02
87	90	4.467084	GACGGGCGCTTCATCCCA	62.467	66.667	7.64	0.00	42.75	4.37
101	104	2.840651	TCATCCCAAAAGTCCTCTCCTC	59.159	50.000	0.00	0.00	0.00	3.71
103	106	1.978580	TCCCAAAAGTCCTCTCCTCAC	59.021	52.381	0.00	0.00	0.00	3.51
104	107	1.003696	CCCAAAAGTCCTCTCCTCACC	59.996	57.143	0.00	0.00	0.00	4.02
146	152	3.848377	TCATATAGCAGAAGATGGGCCAT	59.152	43.478	21.39	21.39	0.00	4.40
181	188	1.918293	CCCACTCACCACTAGGGCA	60.918	63.158	0.00	0.00	42.05	5.36
219	252	0.853586	TGGGCCCCCTCTGGTATTTT	60.854	55.000	22.27	0.00	36.94	1.82
304	349	6.326064	AGTTGTGCAGAATAGGTATCTCTGAT	59.674	38.462	0.00	0.00	39.15	2.90
305	350	6.094193	TGTGCAGAATAGGTATCTCTGATG	57.906	41.667	2.57	0.00	39.15	3.07
328	373	6.539173	TGTAGCTTTTTCAGGTCCAGAATTA	58.461	36.000	0.00	0.00	34.13	1.40
342	387	1.815003	AGAATTACAGCTGCCAGCAAC	59.185	47.619	20.53	0.00	45.56	4.17
358	403	2.503356	AGCAACCTCCCTCTTCATGTAG	59.497	50.000	0.00	0.00	0.00	2.74
404	449	5.772521	AGACATTAGAATTGCACCACAAAC	58.227	37.500	0.00	0.00	42.86	2.93
415	460	9.248291	GAATTGCACCACAAACTATTATATTGG	57.752	33.333	0.00	0.00	42.86	3.16
474	520	3.281727	AAATGGACGTATCATGCACCT	57.718	42.857	4.87	0.00	0.00	4.00
478	524	4.415881	TGGACGTATCATGCACCTAATT	57.584	40.909	0.00	0.00	0.00	1.40
517	563	4.984161	GCCACCAATGATTAAAATCCATCG	59.016	41.667	0.41	0.00	34.50	3.84
590	637	8.652810	AATTTAGATGCAAATGAATTAGTGGC	57.347	30.769	0.00	0.00	0.00	5.01
591	638	7.408756	TTTAGATGCAAATGAATTAGTGGCT	57.591	32.000	0.00	0.00	0.00	4.75
730	777	4.809007	GCCTCTTCAGAGAAACCTTCCATT	60.809	45.833	5.33	0.00	44.74	3.16
904	952	4.420552	TGGTTCTATCCTCCTCATCCTAGT	59.579	45.833	0.00	0.00	0.00	2.57
937	986	4.591924	ACTATAAATCCACCCTACCTTCCG	59.408	45.833	0.00	0.00	0.00	4.30
977	1029	6.424812	CCAAACTAGCAATTTTCCTTCCTTTG	59.575	38.462	0.00	0.00	0.00	2.77
978	1030	5.139435	ACTAGCAATTTTCCTTCCTTTGC	57.861	39.130	0.00	0.00	42.21	3.68
1101	1155	0.911769	TGATGAAGAAGGCCGGTGAT	59.088	50.000	1.90	0.00	0.00	3.06
1182	1236	0.698238	CAGAGGTGTTCCCATCCCAA	59.302	55.000	0.00	0.00	34.66	4.12
1209	1263	0.673985	CGGTGGCTATCCTGAATCGA	59.326	55.000	0.00	0.00	0.00	3.59
1222	1276	4.124970	CCTGAATCGATTCAAGAGCATGA	58.875	43.478	33.76	13.84	45.26	3.07
1363	1417	1.214589	CTCTTGCACAAGGCCATGC	59.785	57.895	17.27	17.27	43.89	4.06
1372	1426	3.694058	AAGGCCATGCTCAGCGGAG	62.694	63.158	9.76	9.76	44.33	4.63
1389	1443	1.636003	GGAGACCTCCCAGGAAACATT	59.364	52.381	4.72	0.00	43.94	2.71
1391	1445	1.177401	GACCTCCCAGGAAACATTGC	58.823	55.000	0.00	0.00	37.67	3.56
1458	1512	3.134127	GGGGAGCGCACCATGAAC	61.134	66.667	25.48	7.35	37.60	3.18
1491	1545	1.175983	CGCCAGTTTACCAAGCCCAA	61.176	55.000	0.00	0.00	0.00	4.12
1585	1642	1.296392	CTTGACATGGCGAGGTCCA	59.704	57.895	8.09	0.00	40.97	4.02
1625	1682	4.758674	CCAGATCTACAATGGCCACAATAG	59.241	45.833	8.16	10.23	0.00	1.73
1732	1789	8.731591	ATTTGGAATGGCTAATAAGATGGATT	57.268	30.769	0.00	0.00	0.00	3.01
1734	1791	5.477984	TGGAATGGCTAATAAGATGGATTGC	59.522	40.000	0.00	0.00	0.00	3.56
1744	1801	3.589951	AGATGGATTGCTTACCTGCAT	57.410	42.857	0.00	0.00	42.96	3.96
1745	1802	3.907221	AGATGGATTGCTTACCTGCATT	58.093	40.909	0.00	0.00	42.96	3.56
1746	1803	4.284178	AGATGGATTGCTTACCTGCATTT	58.716	39.130	0.00	0.00	42.96	2.32
1747	1804	4.713321	AGATGGATTGCTTACCTGCATTTT	59.287	37.500	0.00	0.00	42.96	1.82
1748	1805	4.888326	TGGATTGCTTACCTGCATTTTT	57.112	36.364	0.00	0.00	42.96	1.94
1816	1875	5.635700	GGTCTCAGTGTTGCTCTTTTAGTAG	59.364	44.000	0.00	0.00	0.00	2.57
1819	1878	6.265649	TCTCAGTGTTGCTCTTTTAGTAGAGT	59.734	38.462	0.00	0.00	42.93	3.24
1900	1959	3.692593	AGTTAGTTGCAACGTTGAGGTTT	59.307	39.130	31.62	13.96	33.50	3.27
1927	1986	8.379457	ACCTACTCTTTATGTCAACTTGTTTC	57.621	34.615	0.00	0.00	0.00	2.78
1928	1987	7.990886	ACCTACTCTTTATGTCAACTTGTTTCA	59.009	33.333	0.00	0.00	0.00	2.69
1994	2053	5.361285	AGCGATCCAACTATGAAGAGTTACT	59.639	40.000	0.00	0.00	37.57	2.24
2010	2069	2.586258	TACTTCTCGGCTTCTGCATC	57.414	50.000	0.00	0.00	41.91	3.91
2175	2241	2.663196	GCCTCTACACCCGCAACT	59.337	61.111	0.00	0.00	0.00	3.16
2318	2390	2.171448	ACTCTATTGGGTGCATCCTGTC	59.829	50.000	18.94	0.00	36.25	3.51
2328	2400	2.877168	GTGCATCCTGTCATGGAAGATC	59.123	50.000	0.00	0.00	39.85	2.75
2371	2443	6.491745	TGCCACTACTTTGAAAATGAATGGTA	59.508	34.615	0.00	0.00	0.00	3.25
2373	2445	7.702348	GCCACTACTTTGAAAATGAATGGTATC	59.298	37.037	0.00	0.00	0.00	2.24
2433	2505	5.794687	ATTCGTTCATTTCACTGCGATAA	57.205	34.783	0.00	0.00	0.00	1.75
2455	2527	5.536497	ATTTCTAGGGAGGTGGTCAAAAT	57.464	39.130	0.00	0.00	0.00	1.82
2462	2534	2.827921	GGAGGTGGTCAAAATCAGCAAT	59.172	45.455	0.00	0.00	34.23	3.56
2522	2594	9.265901	CTTTAGACTGACTGAATGGGTATTATG	57.734	37.037	0.00	0.00	0.00	1.90
2524	2596	7.060383	AGACTGACTGAATGGGTATTATGAG	57.940	40.000	0.00	0.00	0.00	2.90
2560	2642	4.087892	CCCCACTCAGCCTGTCCG	62.088	72.222	0.00	0.00	0.00	4.79

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
30	31	4.065110	GCACTTTTGCTCTCCGGT	57.935	55.556	0.00	0.00	46.17	5.28
82	85	2.573915	GTGAGGAGAGGACTTTTGGGAT	59.426	50.000	0.00	0.00	0.00	3.85
87	90	4.413851	AGAAAAGGTGAGGAGAGGACTTTT	59.586	41.667	0.00	0.00	39.86	2.27
101	104	2.094026	GCCATTTGCCCTAGAAAAGGTG	60.094	50.000	0.00	0.00	44.90	4.00
103	106	2.460669	AGCCATTTGCCCTAGAAAAGG	58.539	47.619	0.00	0.00	46.09	3.11
104	107	3.511146	TGAAGCCATTTGCCCTAGAAAAG	59.489	43.478	0.00	0.00	42.71	2.27
168	175	3.702048	GGCGTGCCCTAGTGGTGA	61.702	66.667	0.00	0.00	36.04	4.02
169	176	3.665675	GAGGCGTGCCCTAGTGGTG	62.666	68.421	7.39	0.00	46.60	4.17
170	177	3.391382	GAGGCGTGCCCTAGTGGT	61.391	66.667	7.39	0.00	46.60	4.16
254	299	8.114331	TCAACATGAGCTGAAATTTTACAGAT	57.886	30.769	10.29	4.49	36.38	2.90
275	320	6.109359	AGATACCTATTCTGCACAACTCAAC	58.891	40.000	0.00	0.00	0.00	3.18
277	322	5.658634	AGAGATACCTATTCTGCACAACTCA	59.341	40.000	0.00	0.00	0.00	3.41
304	349	4.431416	TTCTGGACCTGAAAAAGCTACA	57.569	40.909	11.12	0.00	0.00	2.74
305	350	5.966742	AATTCTGGACCTGAAAAAGCTAC	57.033	39.130	16.75	0.00	0.00	3.58
328	373	2.282040	GAGGTTGCTGGCAGCTGT	60.282	61.111	36.50	19.98	42.97	4.40
342	387	4.502950	GCAAGATCTACATGAAGAGGGAGG	60.503	50.000	0.00	0.00	0.00	4.30
358	403	9.553418	GTCTTTTCTCTCTTAATTTGCAAGATC	57.447	33.333	0.00	0.00	31.82	2.75
439	485	6.629128	ACGTCCATTTTGCATCATATTTTCA	58.371	32.000	0.00	0.00	0.00	2.69
445	491	6.568271	GCATGATACGTCCATTTTGCATCATA	60.568	38.462	0.00	0.00	32.05	2.15
474	520	4.020307	TGGCATGCATAGAGGATCGAATTA	60.020	41.667	21.36	0.00	42.67	1.40
478	524	1.001293	GTGGCATGCATAGAGGATCGA	59.999	52.381	21.36	0.00	42.67	3.59
517	563	1.369625	CCGTCCTTGACTTGCATACC	58.630	55.000	0.00	0.00	0.00	2.73
574	621	4.365723	CCATCAGCCACTAATTCATTTGC	58.634	43.478	0.00	0.00	0.00	3.68
584	631	1.131638	GATCACCCCATCAGCCACTA	58.868	55.000	0.00	0.00	0.00	2.74
590	637	8.874744	ATTCAAAATATAGATCACCCCATCAG	57.125	34.615	0.00	0.00	0.00	2.90
678	725	7.786030	TGCATCTTATTACTAGGATATGCCTC	58.214	38.462	0.00	0.00	46.97	4.70
730	777	2.605818	CGTCAATCGCGGGAGAAAATAA	59.394	45.455	6.13	0.00	0.00	1.40
831	879	2.412870	GCCAAACTTAATTGTGCCCAC	58.587	47.619	0.00	0.00	0.00	4.61
860	908	5.082251	CATGTCGATGGAGGATATGACAT	57.918	43.478	0.14	0.14	45.15	3.06
904	952	3.322828	GTGGATTTATAGTGGCGGACCTA	59.677	47.826	0.00	0.00	36.63	3.08
937	986	1.002792	GTTTGGGTGAGTCGAAAGCAC	60.003	52.381	5.31	5.31	0.00	4.40
977	1029	2.685388	GTCAGCTAAGGGGAAAATCTGC	59.315	50.000	0.00	0.00	0.00	4.26
978	1030	3.955471	TGTCAGCTAAGGGGAAAATCTG	58.045	45.455	0.00	0.00	0.00	2.90
1101	1155	2.043551	TTGCACAAGGTGGCCACA	60.044	55.556	35.78	12.24	33.64	4.17
1209	1263	1.556911	ACCTCCGTCATGCTCTTGAAT	59.443	47.619	0.00	0.00	0.00	2.57
1222	1276	0.470766	TTTAGTTGTGGCACCTCCGT	59.529	50.000	16.26	0.00	37.80	4.69
1372	1426	1.177401	GCAATGTTTCCTGGGAGGTC	58.823	55.000	0.00	0.00	36.53	3.85
1389	1443	1.672030	CATGGTTGTGAGCTCCGCA	60.672	57.895	12.15	7.65	0.00	5.69
1391	1445	2.401766	GCCATGGTTGTGAGCTCCG	61.402	63.158	14.67	0.00	0.00	4.63
1454	1508	0.676466	CGGCTGCCCACTTATGTTCA	60.676	55.000	14.12	0.00	0.00	3.18
1491	1545	1.153168	GCCGGTGACATATGGTGCT	60.153	57.895	7.80	0.00	0.00	4.40
1558	1615	0.685458	GCCATGTCAAGCCATCCCTT	60.685	55.000	0.00	0.00	0.00	3.95
1585	1642	3.254617	GGTGTCGGGGTCCCCTTT	61.255	66.667	25.34	0.00	42.67	3.11
1625	1682	7.963532	TCCCTTCTTACATATTCATAGACCAC	58.036	38.462	0.00	0.00	0.00	4.16
1707	1764	8.591072	CAATCCATCTTATTAGCCATTCCAAAT	58.409	33.333	0.00	0.00	0.00	2.32
1747	1804	9.613428	ACGATTGTCATCTATCCATCTTAAAAA	57.387	29.630	0.00	0.00	0.00	1.94
1748	1805	9.261180	GACGATTGTCATCTATCCATCTTAAAA	57.739	33.333	8.31	0.00	44.82	1.52
1749	1806	8.818141	GACGATTGTCATCTATCCATCTTAAA	57.182	34.615	8.31	0.00	44.82	1.52
1769	1828	7.050377	ACCAAATGTCTCATCTTATTGACGAT	58.950	34.615	0.00	0.00	32.64	3.73
1816	1875	9.659830	AACAATAACAACGACTAAAATTGACTC	57.340	29.630	0.00	0.00	0.00	3.36
1900	1959	9.841295	AAACAAGTTGACATAAAGAGTAGGTAA	57.159	29.630	10.54	0.00	0.00	2.85
1994	2053	1.811266	GCGATGCAGAAGCCGAGAA	60.811	57.895	0.00	0.00	41.13	2.87
2041	2100	4.521639	TGCTCTCGTTTTCCTACAACTCTA	59.478	41.667	0.00	0.00	0.00	2.43
2043	2102	3.429207	GTGCTCTCGTTTTCCTACAACTC	59.571	47.826	0.00	0.00	0.00	3.01
2175	2241	3.766591	TGCTTGTGAAACTTTCCCAAGAA	59.233	39.130	23.31	14.53	44.59	2.52
2207	2273	9.166173	ACTTGATTAATGATGAAACTGATCGAA	57.834	29.630	0.00	0.00	0.00	3.71
2212	2278	7.174413	TGGGACTTGATTAATGATGAAACTGA	58.826	34.615	0.00	0.00	0.00	3.41
2318	2390	6.882678	TGCATTCATATACCAGATCTTCCATG	59.117	38.462	0.00	0.00	0.00	3.66
2328	2400	3.884693	TGGCAACTGCATTCATATACCAG	59.115	43.478	3.76	0.00	44.36	4.00
2371	2443	7.491682	GGCCTAATTATGTGTGAACAAATGAT	58.508	34.615	0.00	0.00	0.00	2.45
2373	2445	5.743398	CGGCCTAATTATGTGTGAACAAATG	59.257	40.000	0.00	0.00	0.00	2.32
2380	2452	3.135712	ACCATCGGCCTAATTATGTGTGA	59.864	43.478	0.00	0.00	0.00	3.58
2413	2485	5.794687	AATTATCGCAGTGAAATGAACGA	57.205	34.783	0.00	0.00	0.00	3.85
2414	2486	6.250819	AGAAATTATCGCAGTGAAATGAACG	58.749	36.000	0.00	0.00	0.00	3.95
2433	2505	5.015178	TGATTTTGACCACCTCCCTAGAAAT	59.985	40.000	0.00	0.00	0.00	2.17
2455	2527	3.252215	CCTTCCACGTTTGTTATTGCTGA	59.748	43.478	0.00	0.00	0.00	4.26
2462	2534	3.383092	ACGCCTTCCACGTTTGTTA	57.617	47.368	0.00	0.00	41.93	2.41
2490	2562	6.226787	CCATTCAGTCAGTCTAAAGTTCAGT	58.773	40.000	0.00	0.00	0.00	3.41
2500	2572	6.613271	ACTCATAATACCCATTCAGTCAGTCT	59.387	38.462	0.00	0.00	0.00	3.24
2543	2617	4.087892	CGGACAGGCTGAGTGGGG	62.088	72.222	23.66	0.00	0.00	4.96

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.