Multiple sequence alignment - TraesCS6B01G028000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G028000 chr6B 100.000 3173 0 0 1 3173 16606960 16610132 0.000000e+00 5860.0
1 TraesCS6B01G028000 chr6B 88.860 1939 165 29 941 2847 16513219 16511300 0.000000e+00 2337.0
2 TraesCS6B01G028000 chr6B 100.000 430 0 0 2744 3173 16653023 16653452 0.000000e+00 795.0
3 TraesCS6B01G028000 chr6B 100.000 430 0 0 2744 3173 16664919 16665348 0.000000e+00 795.0
4 TraesCS6B01G028000 chr6B 78.531 1225 226 28 965 2179 15751037 15749840 0.000000e+00 771.0
5 TraesCS6B01G028000 chr6B 77.752 1299 250 25 1094 2377 14330545 14331819 0.000000e+00 761.0
6 TraesCS6B01G028000 chr6B 77.100 1393 261 33 993 2368 16543995 16542644 0.000000e+00 752.0
7 TraesCS6B01G028000 chr6B 93.705 413 23 3 3 415 48420613 48421022 1.620000e-172 616.0
8 TraesCS6B01G028000 chr6B 96.986 365 11 0 48 412 48420260 48420624 5.820000e-172 614.0
9 TraesCS6B01G028000 chr6B 93.674 411 25 1 3 413 48421805 48422214 5.820000e-172 614.0
10 TraesCS6B01G028000 chr6B 92.271 414 28 3 3 412 48421009 48421422 4.560000e-163 584.0
11 TraesCS6B01G028000 chr6B 91.304 414 31 5 3 416 48421411 48421819 7.690000e-156 560.0
12 TraesCS6B01G028000 chr6B 90.476 399 34 2 14 412 48417452 48417846 1.010000e-144 523.0
13 TraesCS6B01G028000 chr6B 92.055 365 28 1 48 412 48419833 48420196 2.180000e-141 512.0
14 TraesCS6B01G028000 chr6B 91.233 365 30 2 48 412 48419401 48419763 2.200000e-136 496.0
15 TraesCS6B01G028000 chr6B 90.710 366 32 2 48 412 48418964 48419328 1.320000e-133 486.0
16 TraesCS6B01G028000 chr6B 83.495 206 15 7 2849 3036 16510583 16510379 1.170000e-39 174.0
17 TraesCS6B01G028000 chr6B 95.238 84 2 2 3 85 48419752 48419834 7.140000e-27 132.0
18 TraesCS6B01G028000 chr6B 94.048 84 3 2 3 85 48418880 48418962 3.320000e-25 126.0
19 TraesCS6B01G028000 chr6B 94.048 84 3 2 3 85 48419317 48419399 3.320000e-25 126.0
20 TraesCS6B01G028000 chr6B 94.048 84 3 2 3 85 48420185 48420267 3.320000e-25 126.0
21 TraesCS6B01G028000 chr6B 100.000 28 0 0 2376 2403 670581825 670581798 6.000000e-03 52.8
22 TraesCS6B01G028000 chr6A 90.507 1854 111 25 1360 3173 9572345 9574173 0.000000e+00 2388.0
23 TraesCS6B01G028000 chr6A 78.798 1165 206 30 965 2117 9336005 9337140 0.000000e+00 745.0
24 TraesCS6B01G028000 chr6A 77.689 1255 219 49 997 2229 15940106 15938891 0.000000e+00 710.0
25 TraesCS6B01G028000 chr6A 86.879 503 37 17 888 1367 9571469 9571965 1.300000e-148 536.0
26 TraesCS6B01G028000 chr6D 90.795 1749 116 28 888 2601 9061839 9063577 0.000000e+00 2296.0
27 TraesCS6B01G028000 chr6D 78.537 1230 214 36 966 2179 8659853 8658658 0.000000e+00 763.0
28 TraesCS6B01G028000 chr6D 77.468 1185 220 36 967 2133 16775778 16774623 0.000000e+00 665.0
29 TraesCS6B01G028000 chr6D 76.494 1272 248 42 965 2210 14483659 14484905 0.000000e+00 645.0
30 TraesCS6B01G028000 chr6D 89.890 455 24 10 2627 3062 9063834 9064285 1.650000e-157 566.0
31 TraesCS6B01G028000 chr6D 100.000 38 0 0 2591 2628 9063703 9063740 1.580000e-08 71.3
32 TraesCS6B01G028000 chrUn 100.000 430 0 0 2744 3173 351893715 351893286 0.000000e+00 795.0
33 TraesCS6B01G028000 chr2B 78.084 1305 231 36 978 2259 709426193 709424921 0.000000e+00 774.0
34 TraesCS6B01G028000 chr5D 76.761 1235 251 31 984 2207 356636791 356638000 0.000000e+00 658.0
35 TraesCS6B01G028000 chr5A 76.113 1235 256 33 984 2207 456099908 456098702 7.520000e-171 610.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G028000 chr6B 16606960 16610132 3172 False 5860.000000 5860 100.000000 1 3173 1 chr6B.!!$F2 3172
1 TraesCS6B01G028000 chr6B 16510379 16513219 2840 True 1255.500000 2337 86.177500 941 3036 2 chr6B.!!$R4 2095
2 TraesCS6B01G028000 chr6B 15749840 15751037 1197 True 771.000000 771 78.531000 965 2179 1 chr6B.!!$R1 1214
3 TraesCS6B01G028000 chr6B 14330545 14331819 1274 False 761.000000 761 77.752000 1094 2377 1 chr6B.!!$F1 1283
4 TraesCS6B01G028000 chr6B 16542644 16543995 1351 True 752.000000 752 77.100000 993 2368 1 chr6B.!!$R2 1375
5 TraesCS6B01G028000 chr6B 48417452 48422214 4762 False 424.230769 616 93.061231 3 416 13 chr6B.!!$F5 413
6 TraesCS6B01G028000 chr6A 9571469 9574173 2704 False 1462.000000 2388 88.693000 888 3173 2 chr6A.!!$F2 2285
7 TraesCS6B01G028000 chr6A 9336005 9337140 1135 False 745.000000 745 78.798000 965 2117 1 chr6A.!!$F1 1152
8 TraesCS6B01G028000 chr6A 15938891 15940106 1215 True 710.000000 710 77.689000 997 2229 1 chr6A.!!$R1 1232
9 TraesCS6B01G028000 chr6D 9061839 9064285 2446 False 977.766667 2296 93.561667 888 3062 3 chr6D.!!$F2 2174
10 TraesCS6B01G028000 chr6D 8658658 8659853 1195 True 763.000000 763 78.537000 966 2179 1 chr6D.!!$R1 1213
11 TraesCS6B01G028000 chr6D 16774623 16775778 1155 True 665.000000 665 77.468000 967 2133 1 chr6D.!!$R2 1166
12 TraesCS6B01G028000 chr6D 14483659 14484905 1246 False 645.000000 645 76.494000 965 2210 1 chr6D.!!$F1 1245
13 TraesCS6B01G028000 chr2B 709424921 709426193 1272 True 774.000000 774 78.084000 978 2259 1 chr2B.!!$R1 1281
14 TraesCS6B01G028000 chr5D 356636791 356638000 1209 False 658.000000 658 76.761000 984 2207 1 chr5D.!!$F1 1223
15 TraesCS6B01G028000 chr5A 456098702 456099908 1206 True 610.000000 610 76.113000 984 2207 1 chr5A.!!$R1 1223

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
559 4513 0.038618 AAAGGGAATTGTTTCGCGCC 60.039 50.0 0.0 0.0 46.41 6.53 F
592 4546 0.108804 TCGACAAACGGGCTCAGATC 60.109 55.0 0.0 0.0 42.82 2.75 F
610 4564 0.109723 TCCGACAAACTGGGAAAGGG 59.890 55.0 0.0 0.0 0.00 3.95 F
611 4565 0.109723 CCGACAAACTGGGAAAGGGA 59.890 55.0 0.0 0.0 0.00 4.20 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1384 5775 0.391661 ATGAGCCGCTTGATGTCGTT 60.392 50.000 0.00 0.00 0.00 3.85 R
1843 6236 0.532573 TCCTTAGAACGCCTCAGCAG 59.467 55.000 0.00 0.00 39.83 4.24 R
2018 6411 1.229315 ATAGTAGTCCCGCTCGCGAG 61.229 60.000 31.37 31.37 42.83 5.03 R
2382 6800 3.755378 AGGCAATGCTTTCTTGTCTACTG 59.245 43.478 4.82 0.00 36.82 2.74 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
104 2866 9.483916 ACATAATGCACATGATTAATGATTTGG 57.516 29.630 15.24 0.00 38.72 3.28
249 3011 7.080099 CGTGATTGAAATGAATCAGAACTTGT 58.920 34.615 0.00 0.00 41.85 3.16
325 3087 3.311596 CGAAGGAGACGAAAAACCAGTTT 59.688 43.478 0.00 0.00 0.00 2.66
352 3114 0.761323 TGGTGGGAGGTGAGACGAAA 60.761 55.000 0.00 0.00 0.00 3.46
381 4335 3.324993 GGACGAACATAAACCGTACCAA 58.675 45.455 0.00 0.00 36.60 3.67
402 4356 5.338381 CCAAGCTACCAACTCCTTCATTAGA 60.338 44.000 0.00 0.00 0.00 2.10
438 4392 7.919313 ATATACAACGTGACACTATAAACCG 57.081 36.000 3.68 0.00 0.00 4.44
439 4393 4.241590 ACAACGTGACACTATAAACCGA 57.758 40.909 3.68 0.00 0.00 4.69
440 4394 4.813027 ACAACGTGACACTATAAACCGAT 58.187 39.130 3.68 0.00 0.00 4.18
441 4395 4.624024 ACAACGTGACACTATAAACCGATG 59.376 41.667 3.68 0.00 0.00 3.84
442 4396 4.707030 ACGTGACACTATAAACCGATGA 57.293 40.909 3.68 0.00 0.00 2.92
443 4397 4.669318 ACGTGACACTATAAACCGATGAG 58.331 43.478 3.68 0.00 0.00 2.90
444 4398 4.397103 ACGTGACACTATAAACCGATGAGA 59.603 41.667 3.68 0.00 0.00 3.27
445 4399 4.970611 CGTGACACTATAAACCGATGAGAG 59.029 45.833 3.68 0.00 0.00 3.20
446 4400 5.448768 CGTGACACTATAAACCGATGAGAGT 60.449 44.000 3.68 0.00 0.00 3.24
447 4401 6.238293 CGTGACACTATAAACCGATGAGAGTA 60.238 42.308 3.68 0.00 0.00 2.59
448 4402 7.478322 GTGACACTATAAACCGATGAGAGTAA 58.522 38.462 0.00 0.00 0.00 2.24
449 4403 7.972277 GTGACACTATAAACCGATGAGAGTAAA 59.028 37.037 0.00 0.00 0.00 2.01
450 4404 8.692710 TGACACTATAAACCGATGAGAGTAAAT 58.307 33.333 0.00 0.00 0.00 1.40
456 4410 6.657836 AAACCGATGAGAGTAAATAAACGG 57.342 37.500 0.00 0.00 42.78 4.44
457 4411 4.690122 ACCGATGAGAGTAAATAAACGGG 58.310 43.478 0.00 0.00 41.68 5.28
458 4412 4.056050 CCGATGAGAGTAAATAAACGGGG 58.944 47.826 0.00 0.00 35.24 5.73
459 4413 3.493503 CGATGAGAGTAAATAAACGGGGC 59.506 47.826 0.00 0.00 0.00 5.80
460 4414 4.704965 GATGAGAGTAAATAAACGGGGCT 58.295 43.478 0.00 0.00 0.00 5.19
461 4415 3.869065 TGAGAGTAAATAAACGGGGCTG 58.131 45.455 0.00 0.00 0.00 4.85
462 4416 3.203716 GAGAGTAAATAAACGGGGCTGG 58.796 50.000 0.00 0.00 0.00 4.85
463 4417 2.092592 AGAGTAAATAAACGGGGCTGGG 60.093 50.000 0.00 0.00 0.00 4.45
464 4418 1.064240 AGTAAATAAACGGGGCTGGGG 60.064 52.381 0.00 0.00 0.00 4.96
465 4419 1.001282 TAAATAAACGGGGCTGGGGT 58.999 50.000 0.00 0.00 0.00 4.95
466 4420 0.323999 AAATAAACGGGGCTGGGGTC 60.324 55.000 0.00 0.00 0.00 4.46
467 4421 2.546114 AATAAACGGGGCTGGGGTCG 62.546 60.000 0.00 0.00 0.00 4.79
483 4437 3.220447 TCGACCCGACCAATGAAAC 57.780 52.632 0.00 0.00 0.00 2.78
484 4438 0.393448 TCGACCCGACCAATGAAACA 59.607 50.000 0.00 0.00 0.00 2.83
485 4439 1.002659 TCGACCCGACCAATGAAACAT 59.997 47.619 0.00 0.00 0.00 2.71
486 4440 1.810151 CGACCCGACCAATGAAACATT 59.190 47.619 0.00 0.00 0.00 2.71
487 4441 3.004171 CGACCCGACCAATGAAACATTA 58.996 45.455 0.00 0.00 0.00 1.90
488 4442 3.437395 CGACCCGACCAATGAAACATTAA 59.563 43.478 0.00 0.00 0.00 1.40
489 4443 4.670735 CGACCCGACCAATGAAACATTAAC 60.671 45.833 0.00 0.00 0.00 2.01
490 4444 4.145807 ACCCGACCAATGAAACATTAACA 58.854 39.130 0.00 0.00 0.00 2.41
491 4445 4.022676 ACCCGACCAATGAAACATTAACAC 60.023 41.667 0.00 0.00 0.00 3.32
492 4446 4.217550 CCCGACCAATGAAACATTAACACT 59.782 41.667 0.00 0.00 0.00 3.55
493 4447 5.278758 CCCGACCAATGAAACATTAACACTT 60.279 40.000 0.00 0.00 0.00 3.16
494 4448 5.856455 CCGACCAATGAAACATTAACACTTC 59.144 40.000 0.00 0.00 0.00 3.01
495 4449 6.434596 CGACCAATGAAACATTAACACTTCA 58.565 36.000 0.00 0.00 32.67 3.02
496 4450 7.083858 CGACCAATGAAACATTAACACTTCAT 58.916 34.615 0.00 3.16 39.58 2.57
497 4451 8.233868 CGACCAATGAAACATTAACACTTCATA 58.766 33.333 7.71 0.00 37.49 2.15
498 4452 9.906660 GACCAATGAAACATTAACACTTCATAA 57.093 29.630 7.71 0.00 37.49 1.90
502 4456 9.959749 AATGAAACATTAACACTTCATAAACGT 57.040 25.926 7.71 0.00 37.49 3.99
503 4457 9.959749 ATGAAACATTAACACTTCATAAACGTT 57.040 25.926 0.00 0.00 36.88 3.99
504 4458 9.227490 TGAAACATTAACACTTCATAAACGTTG 57.773 29.630 0.00 0.00 0.00 4.10
505 4459 8.568732 AAACATTAACACTTCATAAACGTTGG 57.431 30.769 0.00 0.00 0.00 3.77
506 4460 6.674066 ACATTAACACTTCATAAACGTTGGG 58.326 36.000 0.00 0.00 0.00 4.12
507 4461 3.636282 AACACTTCATAAACGTTGGGC 57.364 42.857 0.00 0.00 0.00 5.36
509 4463 0.519961 ACTTCATAAACGTTGGGCGC 59.480 50.000 0.00 0.00 46.11 6.53
510 4464 0.179174 CTTCATAAACGTTGGGCGCC 60.179 55.000 21.18 21.18 46.11 6.53
511 4465 0.889638 TTCATAAACGTTGGGCGCCA 60.890 50.000 30.85 12.04 46.11 5.69
512 4466 0.678366 TCATAAACGTTGGGCGCCAT 60.678 50.000 30.85 7.38 46.11 4.40
513 4467 0.525242 CATAAACGTTGGGCGCCATG 60.525 55.000 30.85 16.90 46.11 3.66
514 4468 0.963355 ATAAACGTTGGGCGCCATGT 60.963 50.000 30.85 17.65 46.11 3.21
515 4469 1.173444 TAAACGTTGGGCGCCATGTT 61.173 50.000 30.85 22.63 46.11 2.71
516 4470 2.022240 AAACGTTGGGCGCCATGTTT 62.022 50.000 30.85 26.77 46.11 2.83
517 4471 1.173444 AACGTTGGGCGCCATGTTTA 61.173 50.000 30.85 3.52 46.11 2.01
518 4472 1.136565 CGTTGGGCGCCATGTTTAG 59.863 57.895 30.85 8.44 31.53 1.85
519 4473 1.153842 GTTGGGCGCCATGTTTAGC 60.154 57.895 30.85 8.62 31.53 3.09
524 4478 3.485110 CGCCATGTTTAGCGCTCA 58.515 55.556 16.34 6.43 46.50 4.26
525 4479 2.016961 CGCCATGTTTAGCGCTCAT 58.983 52.632 16.34 9.07 46.50 2.90
526 4480 0.378257 CGCCATGTTTAGCGCTCATT 59.622 50.000 16.34 0.00 46.50 2.57
527 4481 1.202177 CGCCATGTTTAGCGCTCATTT 60.202 47.619 16.34 0.00 46.50 2.32
528 4482 2.731968 CGCCATGTTTAGCGCTCATTTT 60.732 45.455 16.34 0.00 46.50 1.82
529 4483 2.854185 GCCATGTTTAGCGCTCATTTTC 59.146 45.455 16.34 0.21 0.00 2.29
530 4484 3.438360 CCATGTTTAGCGCTCATTTTCC 58.562 45.455 16.34 0.00 0.00 3.13
531 4485 3.129287 CCATGTTTAGCGCTCATTTTCCT 59.871 43.478 16.34 0.00 0.00 3.36
532 4486 4.380867 CCATGTTTAGCGCTCATTTTCCTT 60.381 41.667 16.34 0.00 0.00 3.36
533 4487 5.163663 CCATGTTTAGCGCTCATTTTCCTTA 60.164 40.000 16.34 0.00 0.00 2.69
534 4488 5.950758 TGTTTAGCGCTCATTTTCCTTAA 57.049 34.783 16.34 0.00 0.00 1.85
535 4489 5.695818 TGTTTAGCGCTCATTTTCCTTAAC 58.304 37.500 16.34 4.76 0.00 2.01
536 4490 5.472137 TGTTTAGCGCTCATTTTCCTTAACT 59.528 36.000 16.34 0.00 0.00 2.24
537 4491 5.545658 TTAGCGCTCATTTTCCTTAACTG 57.454 39.130 16.34 0.00 0.00 3.16
538 4492 2.749621 AGCGCTCATTTTCCTTAACTGG 59.250 45.455 2.64 0.00 0.00 4.00
539 4493 2.159379 GCGCTCATTTTCCTTAACTGGG 60.159 50.000 0.00 0.00 0.00 4.45
540 4494 3.343617 CGCTCATTTTCCTTAACTGGGA 58.656 45.455 0.00 0.00 0.00 4.37
541 4495 3.756434 CGCTCATTTTCCTTAACTGGGAA 59.244 43.478 0.00 0.00 40.61 3.97
542 4496 4.217550 CGCTCATTTTCCTTAACTGGGAAA 59.782 41.667 3.84 3.84 46.96 3.13
547 4501 4.817874 TTTCCTTAACTGGGAAAGGGAA 57.182 40.909 3.84 0.00 44.75 3.97
548 4502 5.348259 TTTCCTTAACTGGGAAAGGGAAT 57.652 39.130 3.84 0.00 44.75 3.01
549 4503 5.348259 TTCCTTAACTGGGAAAGGGAATT 57.652 39.130 1.52 0.00 42.20 2.17
550 4504 4.672899 TCCTTAACTGGGAAAGGGAATTG 58.327 43.478 1.52 0.00 42.20 2.32
551 4505 4.107311 TCCTTAACTGGGAAAGGGAATTGT 59.893 41.667 1.52 0.00 42.20 2.71
552 4506 4.838423 CCTTAACTGGGAAAGGGAATTGTT 59.162 41.667 0.00 0.00 38.91 2.83
553 4507 5.306937 CCTTAACTGGGAAAGGGAATTGTTT 59.693 40.000 0.00 0.00 38.91 2.83
554 4508 4.955811 AACTGGGAAAGGGAATTGTTTC 57.044 40.909 0.00 0.00 32.79 2.78
555 4509 2.890945 ACTGGGAAAGGGAATTGTTTCG 59.109 45.455 0.00 0.00 34.11 3.46
556 4510 1.616374 TGGGAAAGGGAATTGTTTCGC 59.384 47.619 11.66 11.66 42.79 4.70
557 4511 1.402325 GGGAAAGGGAATTGTTTCGCG 60.402 52.381 0.00 0.00 46.41 5.87
558 4512 1.336877 GAAAGGGAATTGTTTCGCGC 58.663 50.000 0.00 0.00 46.41 6.86
559 4513 0.038618 AAAGGGAATTGTTTCGCGCC 60.039 50.000 0.00 0.00 46.41 6.53
560 4514 2.195123 AAGGGAATTGTTTCGCGCCG 62.195 55.000 0.00 0.00 46.41 6.46
561 4515 2.559330 GGAATTGTTTCGCGCCGT 59.441 55.556 0.00 0.00 32.28 5.68
562 4516 1.511254 GGAATTGTTTCGCGCCGTC 60.511 57.895 0.00 0.00 32.28 4.79
563 4517 1.857426 GAATTGTTTCGCGCCGTCG 60.857 57.895 0.00 0.00 39.07 5.12
573 4527 4.891727 CGCCGTCGCTAGCCCATT 62.892 66.667 9.66 0.00 0.00 3.16
574 4528 2.967615 GCCGTCGCTAGCCCATTC 60.968 66.667 9.66 0.00 0.00 2.67
575 4529 2.658593 CCGTCGCTAGCCCATTCG 60.659 66.667 9.66 6.88 0.00 3.34
576 4530 2.411701 CGTCGCTAGCCCATTCGA 59.588 61.111 9.66 0.00 0.00 3.71
577 4531 1.944676 CGTCGCTAGCCCATTCGAC 60.945 63.158 9.66 8.54 45.30 4.20
578 4532 3.610976 TCGCTAGCCCATTCGACA 58.389 55.556 9.66 0.00 0.00 4.35
579 4533 1.894512 TCGCTAGCCCATTCGACAA 59.105 52.632 9.66 0.00 0.00 3.18
580 4534 0.248012 TCGCTAGCCCATTCGACAAA 59.752 50.000 9.66 0.00 0.00 2.83
581 4535 0.373716 CGCTAGCCCATTCGACAAAC 59.626 55.000 9.66 0.00 0.00 2.93
582 4536 0.373716 GCTAGCCCATTCGACAAACG 59.626 55.000 2.29 0.00 44.09 3.60
583 4537 1.006832 CTAGCCCATTCGACAAACGG 58.993 55.000 0.00 0.00 42.82 4.44
584 4538 0.391927 TAGCCCATTCGACAAACGGG 60.392 55.000 0.00 0.00 42.82 5.28
585 4539 2.874751 CCCATTCGACAAACGGGC 59.125 61.111 0.00 0.00 42.82 6.13
586 4540 1.674322 CCCATTCGACAAACGGGCT 60.674 57.895 0.00 0.00 42.82 5.19
587 4541 1.644786 CCCATTCGACAAACGGGCTC 61.645 60.000 0.00 0.00 42.82 4.70
588 4542 0.953471 CCATTCGACAAACGGGCTCA 60.953 55.000 0.00 0.00 42.82 4.26
589 4543 0.443869 CATTCGACAAACGGGCTCAG 59.556 55.000 0.00 0.00 42.82 3.35
590 4544 0.320374 ATTCGACAAACGGGCTCAGA 59.680 50.000 0.00 0.00 42.82 3.27
591 4545 0.320374 TTCGACAAACGGGCTCAGAT 59.680 50.000 0.00 0.00 42.82 2.90
592 4546 0.108804 TCGACAAACGGGCTCAGATC 60.109 55.000 0.00 0.00 42.82 2.75
593 4547 1.084370 CGACAAACGGGCTCAGATCC 61.084 60.000 0.00 0.00 38.46 3.36
600 4554 2.768834 GGGCTCAGATCCGACAAAC 58.231 57.895 0.00 0.00 0.00 2.93
601 4555 0.250513 GGGCTCAGATCCGACAAACT 59.749 55.000 0.00 0.00 0.00 2.66
602 4556 1.363744 GGCTCAGATCCGACAAACTG 58.636 55.000 0.00 0.00 0.00 3.16
603 4557 1.363744 GCTCAGATCCGACAAACTGG 58.636 55.000 0.00 0.00 0.00 4.00
604 4558 2.009042 GCTCAGATCCGACAAACTGGG 61.009 57.143 0.00 0.00 34.42 4.45
605 4559 1.550524 CTCAGATCCGACAAACTGGGA 59.449 52.381 0.00 0.00 33.26 4.37
606 4560 1.974957 TCAGATCCGACAAACTGGGAA 59.025 47.619 0.00 0.00 32.71 3.97
607 4561 2.370519 TCAGATCCGACAAACTGGGAAA 59.629 45.455 0.00 0.00 32.71 3.13
608 4562 2.744202 CAGATCCGACAAACTGGGAAAG 59.256 50.000 0.00 0.00 32.71 2.62
609 4563 2.084546 GATCCGACAAACTGGGAAAGG 58.915 52.381 0.00 0.00 32.71 3.11
610 4564 0.109723 TCCGACAAACTGGGAAAGGG 59.890 55.000 0.00 0.00 0.00 3.95
611 4565 0.109723 CCGACAAACTGGGAAAGGGA 59.890 55.000 0.00 0.00 0.00 4.20
612 4566 1.477923 CCGACAAACTGGGAAAGGGAA 60.478 52.381 0.00 0.00 0.00 3.97
613 4567 2.303175 CGACAAACTGGGAAAGGGAAA 58.697 47.619 0.00 0.00 0.00 3.13
614 4568 2.034179 CGACAAACTGGGAAAGGGAAAC 59.966 50.000 0.00 0.00 0.00 2.78
615 4569 3.296854 GACAAACTGGGAAAGGGAAACT 58.703 45.455 0.00 0.00 0.00 2.66
616 4570 3.031013 ACAAACTGGGAAAGGGAAACTG 58.969 45.455 0.00 0.00 0.00 3.16
617 4571 1.704641 AACTGGGAAAGGGAAACTGC 58.295 50.000 0.00 0.00 0.00 4.40
618 4572 0.853530 ACTGGGAAAGGGAAACTGCT 59.146 50.000 0.00 0.00 0.00 4.24
619 4573 1.217942 ACTGGGAAAGGGAAACTGCTT 59.782 47.619 0.00 0.00 0.00 3.91
620 4574 1.615392 CTGGGAAAGGGAAACTGCTTG 59.385 52.381 0.00 0.00 0.00 4.01
621 4575 0.318441 GGGAAAGGGAAACTGCTTGC 59.682 55.000 0.00 0.00 0.00 4.01
622 4576 1.039856 GGAAAGGGAAACTGCTTGCA 58.960 50.000 0.00 0.00 0.00 4.08
623 4577 1.000171 GGAAAGGGAAACTGCTTGCAG 60.000 52.381 19.62 19.62 0.00 4.41
624 4578 1.683385 GAAAGGGAAACTGCTTGCAGT 59.317 47.619 20.95 20.95 36.92 4.40
625 4579 1.780503 AAGGGAAACTGCTTGCAGTT 58.219 45.000 28.63 28.63 46.26 3.16
637 4591 2.474266 GCAGTTTGCGCGATCGAA 59.526 55.556 21.57 0.60 38.10 3.71
638 4592 1.154488 GCAGTTTGCGCGATCGAAA 60.154 52.632 21.57 7.89 38.10 3.46
639 4593 1.388475 GCAGTTTGCGCGATCGAAAC 61.388 55.000 21.57 19.48 38.10 2.78
640 4594 0.110867 CAGTTTGCGCGATCGAAACA 60.111 50.000 24.23 14.73 37.75 2.83
641 4595 0.163788 AGTTTGCGCGATCGAAACAG 59.836 50.000 24.23 10.65 37.75 3.16
642 4596 0.110823 GTTTGCGCGATCGAAACAGT 60.111 50.000 21.57 0.00 36.58 3.55
643 4597 0.110867 TTTGCGCGATCGAAACAGTG 60.111 50.000 21.57 0.00 38.10 3.66
644 4598 2.276058 GCGCGATCGAAACAGTGC 60.276 61.111 21.57 2.18 38.10 4.40
645 4599 2.730672 GCGCGATCGAAACAGTGCT 61.731 57.895 21.57 0.00 38.10 4.40
646 4600 1.410737 GCGCGATCGAAACAGTGCTA 61.411 55.000 21.57 0.00 38.10 3.49
647 4601 0.567968 CGCGATCGAAACAGTGCTAG 59.432 55.000 21.57 0.00 38.10 3.42
648 4602 1.794076 CGCGATCGAAACAGTGCTAGA 60.794 52.381 21.57 0.00 38.10 2.43
649 4603 2.464865 GCGATCGAAACAGTGCTAGAT 58.535 47.619 21.57 0.00 0.00 1.98
650 4604 2.860735 GCGATCGAAACAGTGCTAGATT 59.139 45.455 21.57 0.00 0.00 2.40
651 4605 3.307242 GCGATCGAAACAGTGCTAGATTT 59.693 43.478 21.57 0.00 0.00 2.17
652 4606 4.503007 GCGATCGAAACAGTGCTAGATTTA 59.497 41.667 21.57 0.00 0.00 1.40
653 4607 5.554696 GCGATCGAAACAGTGCTAGATTTAC 60.555 44.000 21.57 0.00 0.00 2.01
654 4608 5.744345 CGATCGAAACAGTGCTAGATTTACT 59.256 40.000 10.26 0.00 0.00 2.24
655 4609 6.910972 CGATCGAAACAGTGCTAGATTTACTA 59.089 38.462 10.26 0.00 0.00 1.82
656 4610 7.096966 CGATCGAAACAGTGCTAGATTTACTAC 60.097 40.741 10.26 0.00 0.00 2.73
657 4611 7.154435 TCGAAACAGTGCTAGATTTACTACT 57.846 36.000 0.00 0.00 0.00 2.57
658 4612 7.600065 TCGAAACAGTGCTAGATTTACTACTT 58.400 34.615 0.00 0.00 0.00 2.24
659 4613 7.541091 TCGAAACAGTGCTAGATTTACTACTTG 59.459 37.037 0.00 0.00 0.00 3.16
660 4614 7.328737 CGAAACAGTGCTAGATTTACTACTTGT 59.671 37.037 0.00 0.00 0.00 3.16
661 4615 7.891183 AACAGTGCTAGATTTACTACTTGTG 57.109 36.000 0.00 0.00 0.00 3.33
662 4616 6.398918 ACAGTGCTAGATTTACTACTTGTGG 58.601 40.000 0.00 0.00 0.00 4.17
663 4617 6.014499 ACAGTGCTAGATTTACTACTTGTGGT 60.014 38.462 0.00 0.00 0.00 4.16
664 4618 6.531948 CAGTGCTAGATTTACTACTTGTGGTC 59.468 42.308 0.00 0.00 0.00 4.02
665 4619 5.515626 GTGCTAGATTTACTACTTGTGGTCG 59.484 44.000 0.00 0.00 0.00 4.79
666 4620 5.041940 GCTAGATTTACTACTTGTGGTCGG 58.958 45.833 0.00 0.00 0.00 4.79
667 4621 4.467198 AGATTTACTACTTGTGGTCGGG 57.533 45.455 0.00 0.00 0.00 5.14
668 4622 2.460757 TTTACTACTTGTGGTCGGGC 57.539 50.000 0.00 0.00 0.00 6.13
669 4623 0.244450 TTACTACTTGTGGTCGGGCG 59.756 55.000 0.00 0.00 0.00 6.13
670 4624 1.597797 TACTACTTGTGGTCGGGCGG 61.598 60.000 0.00 0.00 0.00 6.13
671 4625 2.918802 TACTTGTGGTCGGGCGGT 60.919 61.111 0.00 0.00 0.00 5.68
672 4626 1.597797 CTACTTGTGGTCGGGCGGTA 61.598 60.000 0.00 0.00 0.00 4.02
673 4627 0.971959 TACTTGTGGTCGGGCGGTAT 60.972 55.000 0.00 0.00 0.00 2.73
674 4628 1.813753 CTTGTGGTCGGGCGGTATG 60.814 63.158 0.00 0.00 0.00 2.39
675 4629 3.961838 TTGTGGTCGGGCGGTATGC 62.962 63.158 0.00 0.00 45.38 3.14
676 4630 4.157120 GTGGTCGGGCGGTATGCT 62.157 66.667 0.00 0.00 45.43 3.79
677 4631 3.395702 TGGTCGGGCGGTATGCTT 61.396 61.111 0.00 0.00 45.43 3.91
678 4632 2.124860 GGTCGGGCGGTATGCTTT 60.125 61.111 0.00 0.00 45.43 3.51
679 4633 1.747745 GGTCGGGCGGTATGCTTTT 60.748 57.895 0.00 0.00 45.43 2.27
680 4634 1.310216 GGTCGGGCGGTATGCTTTTT 61.310 55.000 0.00 0.00 45.43 1.94
717 4671 8.327941 TGAAGTCATCACAGATAAAAAGGAAG 57.672 34.615 0.00 0.00 31.50 3.46
718 4672 8.156820 TGAAGTCATCACAGATAAAAAGGAAGA 58.843 33.333 0.00 0.00 31.50 2.87
719 4673 9.171877 GAAGTCATCACAGATAAAAAGGAAGAT 57.828 33.333 0.00 0.00 0.00 2.40
726 4680 9.520515 TCACAGATAAAAAGGAAGATAAAAGCT 57.479 29.630 0.00 0.00 0.00 3.74
727 4681 9.780413 CACAGATAAAAAGGAAGATAAAAGCTC 57.220 33.333 0.00 0.00 0.00 4.09
728 4682 9.520515 ACAGATAAAAAGGAAGATAAAAGCTCA 57.479 29.630 0.00 0.00 0.00 4.26
730 4684 9.746457 AGATAAAAAGGAAGATAAAAGCTCAGT 57.254 29.630 0.00 0.00 0.00 3.41
734 4688 8.691661 AAAAGGAAGATAAAAGCTCAGTTACA 57.308 30.769 0.00 0.00 0.00 2.41
735 4689 8.870075 AAAGGAAGATAAAAGCTCAGTTACAT 57.130 30.769 0.00 0.00 0.00 2.29
736 4690 9.959721 AAAGGAAGATAAAAGCTCAGTTACATA 57.040 29.630 0.00 0.00 0.00 2.29
745 4699 8.635765 AAAAGCTCAGTTACATATTTTGGAGA 57.364 30.769 0.00 0.00 0.00 3.71
746 4700 7.617041 AAGCTCAGTTACATATTTTGGAGAC 57.383 36.000 0.00 0.00 0.00 3.36
747 4701 6.711277 AGCTCAGTTACATATTTTGGAGACA 58.289 36.000 0.00 0.00 39.83 3.41
786 4740 9.832445 TTGAGAGTAGTGAAAAGTTCAATTACT 57.168 29.630 12.58 12.58 42.15 2.24
787 4741 9.832445 TGAGAGTAGTGAAAAGTTCAATTACTT 57.168 29.630 13.38 0.00 42.15 2.24
809 4763 8.122472 ACTTTGAGAAGAAAAAGAAAACTCCA 57.878 30.769 2.38 0.00 36.96 3.86
810 4764 8.029522 ACTTTGAGAAGAAAAAGAAAACTCCAC 58.970 33.333 2.38 0.00 36.96 4.02
811 4765 7.703058 TTGAGAAGAAAAAGAAAACTCCACT 57.297 32.000 0.00 0.00 0.00 4.00
812 4766 7.088589 TGAGAAGAAAAAGAAAACTCCACTG 57.911 36.000 0.00 0.00 0.00 3.66
813 4767 6.659242 TGAGAAGAAAAAGAAAACTCCACTGT 59.341 34.615 0.00 0.00 0.00 3.55
814 4768 7.827236 TGAGAAGAAAAAGAAAACTCCACTGTA 59.173 33.333 0.00 0.00 0.00 2.74
815 4769 8.575649 AGAAGAAAAAGAAAACTCCACTGTAA 57.424 30.769 0.00 0.00 0.00 2.41
816 4770 9.020731 AGAAGAAAAAGAAAACTCCACTGTAAA 57.979 29.630 0.00 0.00 0.00 2.01
817 4771 8.981724 AAGAAAAAGAAAACTCCACTGTAAAC 57.018 30.769 0.00 0.00 0.00 2.01
818 4772 8.349568 AGAAAAAGAAAACTCCACTGTAAACT 57.650 30.769 0.00 0.00 0.00 2.66
819 4773 8.459635 AGAAAAAGAAAACTCCACTGTAAACTC 58.540 33.333 0.00 0.00 0.00 3.01
820 4774 7.939784 AAAAGAAAACTCCACTGTAAACTCT 57.060 32.000 0.00 0.00 0.00 3.24
821 4775 7.939784 AAAGAAAACTCCACTGTAAACTCTT 57.060 32.000 0.00 0.00 0.00 2.85
822 4776 7.555306 AAGAAAACTCCACTGTAAACTCTTC 57.445 36.000 0.00 0.00 0.00 2.87
823 4777 6.650120 AGAAAACTCCACTGTAAACTCTTCA 58.350 36.000 0.00 0.00 0.00 3.02
824 4778 6.539103 AGAAAACTCCACTGTAAACTCTTCAC 59.461 38.462 0.00 0.00 0.00 3.18
825 4779 5.615925 AACTCCACTGTAAACTCTTCACT 57.384 39.130 0.00 0.00 0.00 3.41
826 4780 4.950050 ACTCCACTGTAAACTCTTCACTG 58.050 43.478 0.00 0.00 0.00 3.66
827 4781 4.406003 ACTCCACTGTAAACTCTTCACTGT 59.594 41.667 0.00 0.00 0.00 3.55
828 4782 5.597182 ACTCCACTGTAAACTCTTCACTGTA 59.403 40.000 0.00 0.00 0.00 2.74
829 4783 5.839621 TCCACTGTAAACTCTTCACTGTAC 58.160 41.667 0.00 0.00 0.00 2.90
830 4784 4.680110 CCACTGTAAACTCTTCACTGTACG 59.320 45.833 0.00 0.00 0.00 3.67
831 4785 5.506815 CCACTGTAAACTCTTCACTGTACGA 60.507 44.000 0.00 0.00 0.00 3.43
832 4786 5.625721 CACTGTAAACTCTTCACTGTACGAG 59.374 44.000 0.00 0.00 0.00 4.18
833 4787 5.298777 ACTGTAAACTCTTCACTGTACGAGT 59.701 40.000 0.00 0.00 38.29 4.18
834 4788 6.140303 TGTAAACTCTTCACTGTACGAGTT 57.860 37.500 10.74 10.74 45.64 3.01
835 4789 5.975344 TGTAAACTCTTCACTGTACGAGTTG 59.025 40.000 14.91 0.00 43.65 3.16
836 4790 3.014604 ACTCTTCACTGTACGAGTTGC 57.985 47.619 0.00 0.00 33.21 4.17
837 4791 2.623889 ACTCTTCACTGTACGAGTTGCT 59.376 45.455 0.00 0.00 33.21 3.91
838 4792 2.983136 CTCTTCACTGTACGAGTTGCTG 59.017 50.000 0.00 0.00 29.75 4.41
839 4793 1.457303 CTTCACTGTACGAGTTGCTGC 59.543 52.381 0.00 0.00 29.75 5.25
840 4794 0.387565 TCACTGTACGAGTTGCTGCA 59.612 50.000 0.00 0.00 29.75 4.41
841 4795 0.786581 CACTGTACGAGTTGCTGCAG 59.213 55.000 10.11 10.11 29.75 4.41
842 4796 0.946221 ACTGTACGAGTTGCTGCAGC 60.946 55.000 31.89 31.89 42.50 5.25
843 4797 1.630244 CTGTACGAGTTGCTGCAGCC 61.630 60.000 34.64 20.80 41.18 4.85
844 4798 2.047274 TACGAGTTGCTGCAGCCC 60.047 61.111 34.64 24.52 41.18 5.19
845 4799 2.878089 TACGAGTTGCTGCAGCCCA 61.878 57.895 34.64 19.56 41.18 5.36
846 4800 2.786539 TACGAGTTGCTGCAGCCCAG 62.787 60.000 34.64 22.33 44.67 4.45
869 4823 4.247380 CCGAGCCCAGCCCATCTC 62.247 72.222 0.00 0.00 0.00 2.75
870 4824 3.473647 CGAGCCCAGCCCATCTCA 61.474 66.667 0.00 0.00 0.00 3.27
871 4825 2.815945 CGAGCCCAGCCCATCTCAT 61.816 63.158 0.00 0.00 0.00 2.90
872 4826 1.072852 GAGCCCAGCCCATCTCATC 59.927 63.158 0.00 0.00 0.00 2.92
873 4827 2.281345 GCCCAGCCCATCTCATCG 60.281 66.667 0.00 0.00 0.00 3.84
874 4828 3.112205 GCCCAGCCCATCTCATCGT 62.112 63.158 0.00 0.00 0.00 3.73
875 4829 1.070445 CCCAGCCCATCTCATCGTC 59.930 63.158 0.00 0.00 0.00 4.20
876 4830 1.689243 CCCAGCCCATCTCATCGTCA 61.689 60.000 0.00 0.00 0.00 4.35
877 4831 0.249784 CCAGCCCATCTCATCGTCAG 60.250 60.000 0.00 0.00 0.00 3.51
878 4832 0.749049 CAGCCCATCTCATCGTCAGA 59.251 55.000 0.00 0.00 0.00 3.27
879 4833 0.749649 AGCCCATCTCATCGTCAGAC 59.250 55.000 0.00 0.00 0.00 3.51
880 4834 0.596083 GCCCATCTCATCGTCAGACG 60.596 60.000 17.33 17.33 44.19 4.18
888 4842 3.166421 TCGTCAGACGAGCGAGAC 58.834 61.111 21.92 1.35 46.73 3.36
889 4843 1.374378 TCGTCAGACGAGCGAGACT 60.374 57.895 21.92 0.00 46.73 3.24
890 4844 1.225881 CGTCAGACGAGCGAGACTG 60.226 63.158 18.63 7.38 46.05 3.51
891 4845 1.627550 CGTCAGACGAGCGAGACTGA 61.628 60.000 18.63 11.04 46.05 3.41
892 4846 2.163603 TCAGACGAGCGAGACTGAC 58.836 57.895 11.04 0.00 35.01 3.51
893 4847 0.602905 TCAGACGAGCGAGACTGACA 60.603 55.000 11.04 0.00 35.01 3.58
894 4848 0.238553 CAGACGAGCGAGACTGACAA 59.761 55.000 7.81 0.00 32.90 3.18
928 4882 1.191489 TCAGCATCCAGGTCGAACCA 61.191 55.000 0.00 0.00 41.95 3.67
938 4892 3.980583 GTCGAACCAGACCACTTCA 57.019 52.632 0.00 0.00 35.22 3.02
939 4893 1.499049 GTCGAACCAGACCACTTCAC 58.501 55.000 0.00 0.00 35.22 3.18
941 4895 0.602905 CGAACCAGACCACTTCACCC 60.603 60.000 0.00 0.00 0.00 4.61
942 4896 0.472471 GAACCAGACCACTTCACCCA 59.528 55.000 0.00 0.00 0.00 4.51
943 4897 1.073923 GAACCAGACCACTTCACCCAT 59.926 52.381 0.00 0.00 0.00 4.00
944 4898 0.693049 ACCAGACCACTTCACCCATC 59.307 55.000 0.00 0.00 0.00 3.51
945 4899 0.987294 CCAGACCACTTCACCCATCT 59.013 55.000 0.00 0.00 0.00 2.90
946 4900 1.065854 CCAGACCACTTCACCCATCTC 60.066 57.143 0.00 0.00 0.00 2.75
947 4901 1.065854 CAGACCACTTCACCCATCTCC 60.066 57.143 0.00 0.00 0.00 3.71
950 4904 0.543749 CCACTTCACCCATCTCCTCC 59.456 60.000 0.00 0.00 0.00 4.30
954 4929 0.547471 TTCACCCATCTCCTCCAGCA 60.547 55.000 0.00 0.00 0.00 4.41
956 4931 1.229625 ACCCATCTCCTCCAGCACA 60.230 57.895 0.00 0.00 0.00 4.57
1029 5009 2.415010 CGTAGCTGCATCCTCGCT 59.585 61.111 1.02 2.73 37.77 4.93
1043 5026 1.604947 CCTCGCTCGTATCCTCTCGTA 60.605 57.143 0.00 0.00 0.00 3.43
1080 5069 2.187946 GCCTCCATCCACCGACTG 59.812 66.667 0.00 0.00 0.00 3.51
1257 5261 3.453679 GTCCGCTCCTTCCTCGCT 61.454 66.667 0.00 0.00 0.00 4.93
1337 5341 2.185350 CGCCAGCGTGGAGAAGAT 59.815 61.111 3.35 0.00 39.92 2.40
1385 5776 3.515286 CCTCGGCCTCTCGCGTAA 61.515 66.667 5.77 0.00 38.94 3.18
1560 5951 0.679960 TCGAGAGGACGATCAAGCCA 60.680 55.000 0.00 0.00 37.37 4.75
1843 6236 0.178068 TTTGTCTAGGGCTCCATCGC 59.822 55.000 0.00 0.00 0.00 4.58
1929 6322 2.614481 GGAACCGGAGTACATTGCTCAA 60.614 50.000 9.46 0.00 34.83 3.02
2025 6418 0.319383 ATGGATTGCTAGCTCGCGAG 60.319 55.000 31.37 31.37 0.00 5.03
2382 6800 2.854522 CCCCGAGGTGTTGTCATTC 58.145 57.895 0.00 0.00 0.00 2.67
2498 6916 4.529897 AGCAATAGAATTGTCCTGCATCA 58.470 39.130 10.32 0.00 0.00 3.07
2540 6958 1.243902 TGGTTTCCGTTCATTCCAGC 58.756 50.000 0.00 0.00 0.00 4.85
2557 6975 4.074970 TCCAGCTTCTCTGTTTCCATTTC 58.925 43.478 0.00 0.00 41.25 2.17
2559 6977 4.077822 CAGCTTCTCTGTTTCCATTTCCT 58.922 43.478 0.00 0.00 38.02 3.36
2575 6993 6.482973 TCCATTTCCTTTTCATTGTCTTTTGC 59.517 34.615 0.00 0.00 0.00 3.68
2586 7004 2.096248 TGTCTTTTGCTTTCCACCGTT 58.904 42.857 0.00 0.00 0.00 4.44
2587 7005 2.159310 TGTCTTTTGCTTTCCACCGTTG 60.159 45.455 0.00 0.00 0.00 4.10
2588 7006 2.096248 TCTTTTGCTTTCCACCGTTGT 58.904 42.857 0.00 0.00 0.00 3.32
2589 7007 3.065648 GTCTTTTGCTTTCCACCGTTGTA 59.934 43.478 0.00 0.00 0.00 2.41
2731 7381 8.372459 TCCTGTAACTGAATTTTACTTCTGCTA 58.628 33.333 1.39 0.00 31.74 3.49
2732 7382 9.167311 CCTGTAACTGAATTTTACTTCTGCTAT 57.833 33.333 1.39 0.00 31.74 2.97
2734 7384 8.946085 TGTAACTGAATTTTACTTCTGCTATGG 58.054 33.333 1.39 0.00 31.74 2.74
2742 7392 9.914131 AATTTTACTTCTGCTATGGAAACTTTC 57.086 29.630 0.00 0.00 0.00 2.62
2830 7480 9.965824 AAACTAAACCAATAAAAGTGACATGAG 57.034 29.630 0.00 0.00 0.00 2.90
2925 8290 6.289064 AGAGAACAGTTTGGTTGGTAACTAG 58.711 40.000 0.00 0.00 33.49 2.57
2954 8444 0.798159 TTGTGCATTGCGAGCTACAG 59.202 50.000 3.84 0.00 0.00 2.74
2970 8460 0.108585 ACAGCAGGTCAACGGTTCAT 59.891 50.000 0.00 0.00 0.00 2.57
2972 8462 2.224426 ACAGCAGGTCAACGGTTCATTA 60.224 45.455 0.00 0.00 0.00 1.90
2973 8463 2.159627 CAGCAGGTCAACGGTTCATTAC 59.840 50.000 0.00 0.00 0.00 1.89
2974 8464 2.038557 AGCAGGTCAACGGTTCATTACT 59.961 45.455 0.00 0.00 0.00 2.24
2993 8501 8.522003 TCATTACTTGATGCTTGCTATGAAAAA 58.478 29.630 0.00 0.00 0.00 1.94
3086 8595 1.599576 GCTGGGTGGGAGAACTCTC 59.400 63.158 0.00 0.00 42.14 3.20
3098 8607 4.569015 GGGAGAACTCTCTAGTCCTCTGTT 60.569 50.000 6.68 0.00 42.48 3.16
3100 8609 3.761752 AGAACTCTCTAGTCCTCTGTTGC 59.238 47.826 0.00 0.00 33.75 4.17
3102 8611 1.754226 CTCTCTAGTCCTCTGTTGCCC 59.246 57.143 0.00 0.00 0.00 5.36
3135 8644 5.165961 TCTCTAGAAGTTGGGGTTCAATG 57.834 43.478 0.00 0.00 37.73 2.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
249 3011 3.799366 TCTTGTTCCGTGCTTACTTTGA 58.201 40.909 0.00 0.00 0.00 2.69
295 3057 5.676532 TTTTCGTCTCCTTCGCATTAAAA 57.323 34.783 0.00 0.00 0.00 1.52
381 4335 5.983540 CTTCTAATGAAGGAGTTGGTAGCT 58.016 41.667 0.00 0.00 44.33 3.32
412 4366 9.616634 CGGTTTATAGTGTCACGTTGTATATAT 57.383 33.333 0.00 0.00 0.00 0.86
413 4367 8.835439 TCGGTTTATAGTGTCACGTTGTATATA 58.165 33.333 0.00 0.00 0.00 0.86
414 4368 7.706159 TCGGTTTATAGTGTCACGTTGTATAT 58.294 34.615 0.00 0.00 0.00 0.86
415 4369 7.082700 TCGGTTTATAGTGTCACGTTGTATA 57.917 36.000 0.00 0.00 0.00 1.47
417 4371 5.369685 TCGGTTTATAGTGTCACGTTGTA 57.630 39.130 0.00 0.00 0.00 2.41
420 4374 5.063180 TCATCGGTTTATAGTGTCACGTT 57.937 39.130 0.00 0.00 0.00 3.99
421 4375 4.397103 TCTCATCGGTTTATAGTGTCACGT 59.603 41.667 0.00 0.00 0.00 4.49
422 4376 4.916870 TCTCATCGGTTTATAGTGTCACG 58.083 43.478 0.00 0.00 0.00 4.35
423 4377 5.892568 ACTCTCATCGGTTTATAGTGTCAC 58.107 41.667 0.00 0.00 0.00 3.67
424 4378 7.634671 TTACTCTCATCGGTTTATAGTGTCA 57.365 36.000 0.00 0.00 0.00 3.58
430 4384 9.467258 CCGTTTATTTACTCTCATCGGTTTATA 57.533 33.333 0.00 0.00 0.00 0.98
432 4386 6.757947 CCCGTTTATTTACTCTCATCGGTTTA 59.242 38.462 0.00 0.00 34.70 2.01
433 4387 5.583457 CCCGTTTATTTACTCTCATCGGTTT 59.417 40.000 0.00 0.00 34.70 3.27
434 4388 5.114081 CCCGTTTATTTACTCTCATCGGTT 58.886 41.667 0.00 0.00 34.70 4.44
435 4389 4.442472 CCCCGTTTATTTACTCTCATCGGT 60.442 45.833 0.00 0.00 34.70 4.69
436 4390 4.056050 CCCCGTTTATTTACTCTCATCGG 58.944 47.826 0.00 0.00 36.00 4.18
437 4391 3.493503 GCCCCGTTTATTTACTCTCATCG 59.506 47.826 0.00 0.00 0.00 3.84
438 4392 4.511826 CAGCCCCGTTTATTTACTCTCATC 59.488 45.833 0.00 0.00 0.00 2.92
439 4393 4.451900 CAGCCCCGTTTATTTACTCTCAT 58.548 43.478 0.00 0.00 0.00 2.90
440 4394 3.370103 CCAGCCCCGTTTATTTACTCTCA 60.370 47.826 0.00 0.00 0.00 3.27
441 4395 3.203716 CCAGCCCCGTTTATTTACTCTC 58.796 50.000 0.00 0.00 0.00 3.20
442 4396 2.092592 CCCAGCCCCGTTTATTTACTCT 60.093 50.000 0.00 0.00 0.00 3.24
443 4397 2.294979 CCCAGCCCCGTTTATTTACTC 58.705 52.381 0.00 0.00 0.00 2.59
444 4398 1.064240 CCCCAGCCCCGTTTATTTACT 60.064 52.381 0.00 0.00 0.00 2.24
445 4399 1.341285 ACCCCAGCCCCGTTTATTTAC 60.341 52.381 0.00 0.00 0.00 2.01
446 4400 1.001282 ACCCCAGCCCCGTTTATTTA 58.999 50.000 0.00 0.00 0.00 1.40
447 4401 0.323999 GACCCCAGCCCCGTTTATTT 60.324 55.000 0.00 0.00 0.00 1.40
448 4402 1.305287 GACCCCAGCCCCGTTTATT 59.695 57.895 0.00 0.00 0.00 1.40
449 4403 3.004090 GACCCCAGCCCCGTTTAT 58.996 61.111 0.00 0.00 0.00 1.40
450 4404 3.708544 CGACCCCAGCCCCGTTTA 61.709 66.667 0.00 0.00 0.00 2.01
465 4419 0.393448 TGTTTCATTGGTCGGGTCGA 59.607 50.000 0.00 0.00 0.00 4.20
466 4420 1.448985 ATGTTTCATTGGTCGGGTCG 58.551 50.000 0.00 0.00 0.00 4.79
467 4421 4.216687 TGTTAATGTTTCATTGGTCGGGTC 59.783 41.667 5.40 0.00 0.00 4.46
468 4422 4.022676 GTGTTAATGTTTCATTGGTCGGGT 60.023 41.667 5.40 0.00 0.00 5.28
469 4423 4.217550 AGTGTTAATGTTTCATTGGTCGGG 59.782 41.667 5.40 0.00 0.00 5.14
470 4424 5.371115 AGTGTTAATGTTTCATTGGTCGG 57.629 39.130 5.40 0.00 0.00 4.79
471 4425 6.434596 TGAAGTGTTAATGTTTCATTGGTCG 58.565 36.000 5.40 0.00 0.00 4.79
472 4426 9.906660 TTATGAAGTGTTAATGTTTCATTGGTC 57.093 29.630 13.14 0.00 39.96 4.02
476 4430 9.959749 ACGTTTATGAAGTGTTAATGTTTCATT 57.040 25.926 13.14 0.80 39.96 2.57
477 4431 9.959749 AACGTTTATGAAGTGTTAATGTTTCAT 57.040 25.926 0.00 12.73 41.61 2.57
478 4432 9.227490 CAACGTTTATGAAGTGTTAATGTTTCA 57.773 29.630 0.00 2.37 34.42 2.69
479 4433 8.687301 CCAACGTTTATGAAGTGTTAATGTTTC 58.313 33.333 0.00 0.00 0.00 2.78
480 4434 7.650104 CCCAACGTTTATGAAGTGTTAATGTTT 59.350 33.333 0.00 0.00 0.00 2.83
481 4435 7.142680 CCCAACGTTTATGAAGTGTTAATGTT 58.857 34.615 0.00 0.00 0.00 2.71
482 4436 6.674066 CCCAACGTTTATGAAGTGTTAATGT 58.326 36.000 0.00 0.00 0.00 2.71
483 4437 5.571357 GCCCAACGTTTATGAAGTGTTAATG 59.429 40.000 0.00 0.00 0.00 1.90
484 4438 5.618195 CGCCCAACGTTTATGAAGTGTTAAT 60.618 40.000 0.00 0.00 36.87 1.40
485 4439 4.319622 CGCCCAACGTTTATGAAGTGTTAA 60.320 41.667 0.00 0.00 36.87 2.01
486 4440 3.186817 CGCCCAACGTTTATGAAGTGTTA 59.813 43.478 0.00 0.00 36.87 2.41
487 4441 2.031508 CGCCCAACGTTTATGAAGTGTT 60.032 45.455 0.00 0.00 36.87 3.32
488 4442 1.533731 CGCCCAACGTTTATGAAGTGT 59.466 47.619 0.00 0.00 36.87 3.55
489 4443 1.727857 GCGCCCAACGTTTATGAAGTG 60.728 52.381 0.00 0.00 46.11 3.16
490 4444 0.519961 GCGCCCAACGTTTATGAAGT 59.480 50.000 0.00 0.00 46.11 3.01
491 4445 0.179174 GGCGCCCAACGTTTATGAAG 60.179 55.000 18.11 0.00 46.11 3.02
492 4446 0.889638 TGGCGCCCAACGTTTATGAA 60.890 50.000 26.77 0.00 46.11 2.57
493 4447 0.678366 ATGGCGCCCAACGTTTATGA 60.678 50.000 26.77 0.00 46.11 2.15
494 4448 0.525242 CATGGCGCCCAACGTTTATG 60.525 55.000 26.77 14.46 46.11 1.90
495 4449 0.963355 ACATGGCGCCCAACGTTTAT 60.963 50.000 26.77 4.61 46.11 1.40
496 4450 1.173444 AACATGGCGCCCAACGTTTA 61.173 50.000 26.77 1.65 46.11 2.01
497 4451 2.022240 AAACATGGCGCCCAACGTTT 62.022 50.000 26.77 22.74 46.11 3.60
498 4452 1.173444 TAAACATGGCGCCCAACGTT 61.173 50.000 26.77 18.23 46.11 3.99
499 4453 1.582610 CTAAACATGGCGCCCAACGT 61.583 55.000 26.77 12.83 46.11 3.99
501 4455 1.153842 GCTAAACATGGCGCCCAAC 60.154 57.895 26.77 0.00 36.95 3.77
502 4456 2.695759 CGCTAAACATGGCGCCCAA 61.696 57.895 26.77 6.41 44.64 4.12
503 4457 3.130819 CGCTAAACATGGCGCCCA 61.131 61.111 26.77 12.96 44.64 5.36
508 4462 2.566952 AAATGAGCGCTAAACATGGC 57.433 45.000 11.50 0.00 0.00 4.40
509 4463 3.129287 AGGAAAATGAGCGCTAAACATGG 59.871 43.478 11.50 0.00 0.00 3.66
510 4464 4.361451 AGGAAAATGAGCGCTAAACATG 57.639 40.909 11.50 0.00 0.00 3.21
511 4465 6.151144 AGTTAAGGAAAATGAGCGCTAAACAT 59.849 34.615 11.50 7.16 0.00 2.71
512 4466 5.472137 AGTTAAGGAAAATGAGCGCTAAACA 59.528 36.000 11.50 4.38 0.00 2.83
513 4467 5.795441 CAGTTAAGGAAAATGAGCGCTAAAC 59.205 40.000 11.50 0.00 35.13 2.01
514 4468 5.106317 CCAGTTAAGGAAAATGAGCGCTAAA 60.106 40.000 11.50 1.11 35.13 1.85
515 4469 4.394920 CCAGTTAAGGAAAATGAGCGCTAA 59.605 41.667 11.50 1.72 35.13 3.09
516 4470 3.938963 CCAGTTAAGGAAAATGAGCGCTA 59.061 43.478 11.50 0.00 35.13 4.26
517 4471 2.749621 CCAGTTAAGGAAAATGAGCGCT 59.250 45.455 11.27 11.27 35.13 5.92
518 4472 2.159379 CCCAGTTAAGGAAAATGAGCGC 60.159 50.000 0.00 0.00 35.13 5.92
519 4473 3.343617 TCCCAGTTAAGGAAAATGAGCG 58.656 45.455 0.00 0.00 35.13 5.03
527 4481 5.083821 CAATTCCCTTTCCCAGTTAAGGAA 58.916 41.667 0.00 0.00 42.90 3.36
528 4482 4.107311 ACAATTCCCTTTCCCAGTTAAGGA 59.893 41.667 0.00 0.00 42.90 3.36
529 4483 4.416516 ACAATTCCCTTTCCCAGTTAAGG 58.583 43.478 0.00 0.00 40.50 2.69
530 4484 6.419484 AAACAATTCCCTTTCCCAGTTAAG 57.581 37.500 0.00 0.00 0.00 1.85
531 4485 5.010213 CGAAACAATTCCCTTTCCCAGTTAA 59.990 40.000 0.00 0.00 31.52 2.01
532 4486 4.521256 CGAAACAATTCCCTTTCCCAGTTA 59.479 41.667 0.00 0.00 31.52 2.24
533 4487 3.320826 CGAAACAATTCCCTTTCCCAGTT 59.679 43.478 0.00 0.00 31.52 3.16
534 4488 2.890945 CGAAACAATTCCCTTTCCCAGT 59.109 45.455 0.00 0.00 31.52 4.00
535 4489 2.352715 GCGAAACAATTCCCTTTCCCAG 60.353 50.000 0.00 0.00 31.52 4.45
536 4490 1.616374 GCGAAACAATTCCCTTTCCCA 59.384 47.619 0.00 0.00 31.52 4.37
537 4491 1.402325 CGCGAAACAATTCCCTTTCCC 60.402 52.381 0.00 0.00 31.52 3.97
538 4492 1.977188 CGCGAAACAATTCCCTTTCC 58.023 50.000 0.00 0.00 31.52 3.13
539 4493 1.336877 GCGCGAAACAATTCCCTTTC 58.663 50.000 12.10 0.00 31.52 2.62
540 4494 0.038618 GGCGCGAAACAATTCCCTTT 60.039 50.000 12.10 0.00 31.52 3.11
541 4495 1.584495 GGCGCGAAACAATTCCCTT 59.416 52.632 12.10 0.00 31.52 3.95
542 4496 2.686816 CGGCGCGAAACAATTCCCT 61.687 57.895 12.10 0.00 31.52 4.20
543 4497 2.202427 CGGCGCGAAACAATTCCC 60.202 61.111 12.10 0.00 31.52 3.97
544 4498 1.511254 GACGGCGCGAAACAATTCC 60.511 57.895 12.10 0.00 31.52 3.01
545 4499 1.857426 CGACGGCGCGAAACAATTC 60.857 57.895 12.10 0.00 0.00 2.17
546 4500 2.172419 CGACGGCGCGAAACAATT 59.828 55.556 12.10 0.00 0.00 2.32
556 4510 4.891727 AATGGGCTAGCGACGGCG 62.892 66.667 6.12 6.12 46.35 6.46
557 4511 2.967615 GAATGGGCTAGCGACGGC 60.968 66.667 9.00 0.00 40.37 5.68
558 4512 2.658593 CGAATGGGCTAGCGACGG 60.659 66.667 9.00 0.00 0.00 4.79
559 4513 1.944676 GTCGAATGGGCTAGCGACG 60.945 63.158 9.00 9.57 42.71 5.12
560 4514 4.014065 GTCGAATGGGCTAGCGAC 57.986 61.111 9.00 11.86 44.83 5.19
561 4515 0.248012 TTTGTCGAATGGGCTAGCGA 59.752 50.000 9.00 0.00 0.00 4.93
562 4516 0.373716 GTTTGTCGAATGGGCTAGCG 59.626 55.000 9.00 0.00 0.00 4.26
563 4517 0.373716 CGTTTGTCGAATGGGCTAGC 59.626 55.000 6.04 6.04 42.86 3.42
564 4518 1.006832 CCGTTTGTCGAATGGGCTAG 58.993 55.000 3.30 0.00 40.21 3.42
565 4519 3.146783 CCGTTTGTCGAATGGGCTA 57.853 52.632 3.30 0.00 40.21 3.93
566 4520 3.981308 CCGTTTGTCGAATGGGCT 58.019 55.556 3.30 0.00 40.21 5.19
569 4523 0.953471 TGAGCCCGTTTGTCGAATGG 60.953 55.000 4.21 4.21 43.01 3.16
570 4524 0.443869 CTGAGCCCGTTTGTCGAATG 59.556 55.000 0.00 0.00 42.86 2.67
571 4525 0.320374 TCTGAGCCCGTTTGTCGAAT 59.680 50.000 0.00 0.00 42.86 3.34
572 4526 0.320374 ATCTGAGCCCGTTTGTCGAA 59.680 50.000 0.00 0.00 42.86 3.71
573 4527 0.108804 GATCTGAGCCCGTTTGTCGA 60.109 55.000 0.00 0.00 42.86 4.20
574 4528 1.084370 GGATCTGAGCCCGTTTGTCG 61.084 60.000 0.00 0.00 39.52 4.35
575 4529 1.084370 CGGATCTGAGCCCGTTTGTC 61.084 60.000 6.34 0.00 40.78 3.18
576 4530 1.079127 CGGATCTGAGCCCGTTTGT 60.079 57.895 6.34 0.00 40.78 2.83
577 4531 1.084370 GTCGGATCTGAGCCCGTTTG 61.084 60.000 17.09 0.25 45.48 2.93
578 4532 1.218316 GTCGGATCTGAGCCCGTTT 59.782 57.895 17.09 0.00 45.48 3.60
579 4533 1.541310 TTGTCGGATCTGAGCCCGTT 61.541 55.000 17.09 0.00 45.48 4.44
580 4534 1.541310 TTTGTCGGATCTGAGCCCGT 61.541 55.000 17.09 0.00 45.48 5.28
581 4535 1.084370 GTTTGTCGGATCTGAGCCCG 61.084 60.000 3.91 10.36 46.57 6.13
582 4536 0.250513 AGTTTGTCGGATCTGAGCCC 59.749 55.000 3.91 0.00 0.00 5.19
583 4537 1.363744 CAGTTTGTCGGATCTGAGCC 58.636 55.000 3.91 0.82 0.00 4.70
584 4538 1.363744 CCAGTTTGTCGGATCTGAGC 58.636 55.000 3.91 0.93 0.00 4.26
585 4539 1.550524 TCCCAGTTTGTCGGATCTGAG 59.449 52.381 3.91 0.00 0.00 3.35
586 4540 1.639722 TCCCAGTTTGTCGGATCTGA 58.360 50.000 0.00 0.00 0.00 3.27
587 4541 2.472695 TTCCCAGTTTGTCGGATCTG 57.527 50.000 0.00 0.00 0.00 2.90
588 4542 2.290323 CCTTTCCCAGTTTGTCGGATCT 60.290 50.000 0.00 0.00 0.00 2.75
589 4543 2.084546 CCTTTCCCAGTTTGTCGGATC 58.915 52.381 0.00 0.00 0.00 3.36
590 4544 1.271926 CCCTTTCCCAGTTTGTCGGAT 60.272 52.381 0.00 0.00 0.00 4.18
591 4545 0.109723 CCCTTTCCCAGTTTGTCGGA 59.890 55.000 0.00 0.00 0.00 4.55
592 4546 0.109723 TCCCTTTCCCAGTTTGTCGG 59.890 55.000 0.00 0.00 0.00 4.79
593 4547 1.975660 TTCCCTTTCCCAGTTTGTCG 58.024 50.000 0.00 0.00 0.00 4.35
594 4548 3.068165 CAGTTTCCCTTTCCCAGTTTGTC 59.932 47.826 0.00 0.00 0.00 3.18
595 4549 3.031013 CAGTTTCCCTTTCCCAGTTTGT 58.969 45.455 0.00 0.00 0.00 2.83
596 4550 2.224042 GCAGTTTCCCTTTCCCAGTTTG 60.224 50.000 0.00 0.00 0.00 2.93
597 4551 2.039418 GCAGTTTCCCTTTCCCAGTTT 58.961 47.619 0.00 0.00 0.00 2.66
598 4552 1.217942 AGCAGTTTCCCTTTCCCAGTT 59.782 47.619 0.00 0.00 0.00 3.16
599 4553 0.853530 AGCAGTTTCCCTTTCCCAGT 59.146 50.000 0.00 0.00 0.00 4.00
600 4554 1.615392 CAAGCAGTTTCCCTTTCCCAG 59.385 52.381 0.00 0.00 0.00 4.45
601 4555 1.703411 CAAGCAGTTTCCCTTTCCCA 58.297 50.000 0.00 0.00 0.00 4.37
602 4556 0.318441 GCAAGCAGTTTCCCTTTCCC 59.682 55.000 0.00 0.00 0.00 3.97
603 4557 1.000171 CTGCAAGCAGTTTCCCTTTCC 60.000 52.381 13.72 0.00 39.10 3.13
604 4558 2.428888 CTGCAAGCAGTTTCCCTTTC 57.571 50.000 13.72 0.00 39.10 2.62
614 4568 2.791396 ATCGCGCAAACTGCAAGCAG 62.791 55.000 19.74 19.74 45.36 4.24
615 4569 2.784957 GATCGCGCAAACTGCAAGCA 62.785 55.000 8.75 0.00 45.36 3.91
616 4570 2.126734 ATCGCGCAAACTGCAAGC 60.127 55.556 8.75 0.00 45.36 4.01
617 4571 1.860423 CGATCGCGCAAACTGCAAG 60.860 57.895 8.75 0.00 45.36 4.01
618 4572 1.836510 TTCGATCGCGCAAACTGCAA 61.837 50.000 11.09 0.00 45.36 4.08
619 4573 1.836510 TTTCGATCGCGCAAACTGCA 61.837 50.000 11.09 0.00 45.36 4.41
620 4574 1.154488 TTTCGATCGCGCAAACTGC 60.154 52.632 11.09 0.00 40.69 4.40
621 4575 0.110867 TGTTTCGATCGCGCAAACTG 60.111 50.000 23.23 0.00 37.86 3.16
622 4576 0.163788 CTGTTTCGATCGCGCAAACT 59.836 50.000 23.23 0.00 37.86 2.66
623 4577 0.110823 ACTGTTTCGATCGCGCAAAC 60.111 50.000 18.76 18.76 37.69 2.93
624 4578 0.110867 CACTGTTTCGATCGCGCAAA 60.111 50.000 11.09 3.07 37.46 3.68
625 4579 1.491127 CACTGTTTCGATCGCGCAA 59.509 52.632 11.09 0.00 37.46 4.85
626 4580 3.010585 GCACTGTTTCGATCGCGCA 62.011 57.895 11.09 7.99 37.46 6.09
627 4581 1.410737 TAGCACTGTTTCGATCGCGC 61.411 55.000 11.09 0.00 37.46 6.86
628 4582 0.567968 CTAGCACTGTTTCGATCGCG 59.432 55.000 11.09 0.00 39.35 5.87
629 4583 1.909376 TCTAGCACTGTTTCGATCGC 58.091 50.000 11.09 0.00 0.00 4.58
630 4584 5.744345 AGTAAATCTAGCACTGTTTCGATCG 59.256 40.000 9.36 9.36 0.00 3.69
631 4585 7.916450 AGTAGTAAATCTAGCACTGTTTCGATC 59.084 37.037 0.00 0.00 0.00 3.69
632 4586 7.773149 AGTAGTAAATCTAGCACTGTTTCGAT 58.227 34.615 0.00 0.00 0.00 3.59
633 4587 7.154435 AGTAGTAAATCTAGCACTGTTTCGA 57.846 36.000 0.00 0.00 0.00 3.71
634 4588 7.328737 ACAAGTAGTAAATCTAGCACTGTTTCG 59.671 37.037 0.00 0.00 0.00 3.46
635 4589 8.436200 CACAAGTAGTAAATCTAGCACTGTTTC 58.564 37.037 0.00 0.00 0.00 2.78
636 4590 7.387948 CCACAAGTAGTAAATCTAGCACTGTTT 59.612 37.037 0.00 0.00 0.00 2.83
637 4591 6.874134 CCACAAGTAGTAAATCTAGCACTGTT 59.126 38.462 0.00 0.00 0.00 3.16
638 4592 6.014499 ACCACAAGTAGTAAATCTAGCACTGT 60.014 38.462 0.00 0.00 0.00 3.55
639 4593 6.398918 ACCACAAGTAGTAAATCTAGCACTG 58.601 40.000 0.00 0.00 0.00 3.66
640 4594 6.607004 ACCACAAGTAGTAAATCTAGCACT 57.393 37.500 0.00 0.00 0.00 4.40
641 4595 5.515626 CGACCACAAGTAGTAAATCTAGCAC 59.484 44.000 0.00 0.00 0.00 4.40
642 4596 5.393787 CCGACCACAAGTAGTAAATCTAGCA 60.394 44.000 0.00 0.00 0.00 3.49
643 4597 5.041940 CCGACCACAAGTAGTAAATCTAGC 58.958 45.833 0.00 0.00 0.00 3.42
644 4598 5.589192 CCCGACCACAAGTAGTAAATCTAG 58.411 45.833 0.00 0.00 0.00 2.43
645 4599 4.142093 GCCCGACCACAAGTAGTAAATCTA 60.142 45.833 0.00 0.00 0.00 1.98
646 4600 3.369157 GCCCGACCACAAGTAGTAAATCT 60.369 47.826 0.00 0.00 0.00 2.40
647 4601 2.934553 GCCCGACCACAAGTAGTAAATC 59.065 50.000 0.00 0.00 0.00 2.17
648 4602 2.675889 CGCCCGACCACAAGTAGTAAAT 60.676 50.000 0.00 0.00 0.00 1.40
649 4603 1.337074 CGCCCGACCACAAGTAGTAAA 60.337 52.381 0.00 0.00 0.00 2.01
650 4604 0.244450 CGCCCGACCACAAGTAGTAA 59.756 55.000 0.00 0.00 0.00 2.24
651 4605 1.597797 CCGCCCGACCACAAGTAGTA 61.598 60.000 0.00 0.00 0.00 1.82
652 4606 2.654877 CGCCCGACCACAAGTAGT 59.345 61.111 0.00 0.00 0.00 2.73
653 4607 1.597797 TACCGCCCGACCACAAGTAG 61.598 60.000 0.00 0.00 0.00 2.57
654 4608 0.971959 ATACCGCCCGACCACAAGTA 60.972 55.000 0.00 0.00 0.00 2.24
655 4609 2.288025 ATACCGCCCGACCACAAGT 61.288 57.895 0.00 0.00 0.00 3.16
656 4610 1.813753 CATACCGCCCGACCACAAG 60.814 63.158 0.00 0.00 0.00 3.16
657 4611 2.266372 CATACCGCCCGACCACAA 59.734 61.111 0.00 0.00 0.00 3.33
658 4612 4.460683 GCATACCGCCCGACCACA 62.461 66.667 0.00 0.00 32.94 4.17
659 4613 3.675619 AAGCATACCGCCCGACCAC 62.676 63.158 0.00 0.00 44.04 4.16
660 4614 2.472414 AAAAGCATACCGCCCGACCA 62.472 55.000 0.00 0.00 44.04 4.02
661 4615 1.310216 AAAAAGCATACCGCCCGACC 61.310 55.000 0.00 0.00 44.04 4.79
662 4616 2.177044 AAAAAGCATACCGCCCGAC 58.823 52.632 0.00 0.00 44.04 4.79
663 4617 4.726334 AAAAAGCATACCGCCCGA 57.274 50.000 0.00 0.00 44.04 5.14
692 4646 8.156820 TCTTCCTTTTTATCTGTGATGACTTCA 58.843 33.333 0.00 0.00 0.00 3.02
693 4647 8.553459 TCTTCCTTTTTATCTGTGATGACTTC 57.447 34.615 0.00 0.00 0.00 3.01
700 4654 9.520515 AGCTTTTATCTTCCTTTTTATCTGTGA 57.479 29.630 0.00 0.00 0.00 3.58
701 4655 9.780413 GAGCTTTTATCTTCCTTTTTATCTGTG 57.220 33.333 0.00 0.00 0.00 3.66
702 4656 9.520515 TGAGCTTTTATCTTCCTTTTTATCTGT 57.479 29.630 0.00 0.00 0.00 3.41
704 4658 9.746457 ACTGAGCTTTTATCTTCCTTTTTATCT 57.254 29.630 0.00 0.00 0.00 1.98
708 4662 9.131791 TGTAACTGAGCTTTTATCTTCCTTTTT 57.868 29.630 0.00 0.00 0.00 1.94
709 4663 8.691661 TGTAACTGAGCTTTTATCTTCCTTTT 57.308 30.769 0.00 0.00 0.00 2.27
710 4664 8.870075 ATGTAACTGAGCTTTTATCTTCCTTT 57.130 30.769 0.00 0.00 0.00 3.11
719 4673 9.733556 TCTCCAAAATATGTAACTGAGCTTTTA 57.266 29.630 0.00 0.00 0.00 1.52
720 4674 8.515414 GTCTCCAAAATATGTAACTGAGCTTTT 58.485 33.333 0.00 0.00 0.00 2.27
721 4675 7.665559 TGTCTCCAAAATATGTAACTGAGCTTT 59.334 33.333 0.00 0.00 0.00 3.51
722 4676 7.168219 TGTCTCCAAAATATGTAACTGAGCTT 58.832 34.615 0.00 0.00 0.00 3.74
723 4677 6.711277 TGTCTCCAAAATATGTAACTGAGCT 58.289 36.000 0.00 0.00 0.00 4.09
724 4678 6.985188 TGTCTCCAAAATATGTAACTGAGC 57.015 37.500 0.00 0.00 0.00 4.26
760 4714 9.832445 AGTAATTGAACTTTTCACTACTCTCAA 57.168 29.630 0.00 0.00 39.87 3.02
761 4715 9.832445 AAGTAATTGAACTTTTCACTACTCTCA 57.168 29.630 9.00 0.00 39.87 3.27
783 4737 9.238368 TGGAGTTTTCTTTTTCTTCTCAAAGTA 57.762 29.630 0.00 0.00 33.95 2.24
786 4740 8.028938 CAGTGGAGTTTTCTTTTTCTTCTCAAA 58.971 33.333 0.00 0.00 0.00 2.69
787 4741 7.176690 ACAGTGGAGTTTTCTTTTTCTTCTCAA 59.823 33.333 0.00 0.00 0.00 3.02
791 4745 9.073368 GTTTACAGTGGAGTTTTCTTTTTCTTC 57.927 33.333 0.00 0.00 0.00 2.87
794 4748 8.459635 AGAGTTTACAGTGGAGTTTTCTTTTTC 58.540 33.333 0.00 0.00 0.00 2.29
797 4751 7.610305 TGAAGAGTTTACAGTGGAGTTTTCTTT 59.390 33.333 0.00 0.00 0.00 2.52
800 4754 6.539103 AGTGAAGAGTTTACAGTGGAGTTTTC 59.461 38.462 0.00 0.00 0.00 2.29
804 4758 4.406003 ACAGTGAAGAGTTTACAGTGGAGT 59.594 41.667 0.00 0.00 38.70 3.85
805 4759 4.950050 ACAGTGAAGAGTTTACAGTGGAG 58.050 43.478 0.00 0.00 38.70 3.86
806 4760 5.506815 CGTACAGTGAAGAGTTTACAGTGGA 60.507 44.000 0.00 0.00 38.70 4.02
808 4762 5.516996 TCGTACAGTGAAGAGTTTACAGTG 58.483 41.667 0.00 0.00 39.79 3.66
809 4763 5.298777 ACTCGTACAGTGAAGAGTTTACAGT 59.701 40.000 11.88 0.00 40.64 3.55
810 4764 5.759963 ACTCGTACAGTGAAGAGTTTACAG 58.240 41.667 11.88 1.03 40.64 2.74
811 4765 5.762825 ACTCGTACAGTGAAGAGTTTACA 57.237 39.130 11.88 0.00 40.64 2.41
816 4770 2.623889 AGCAACTCGTACAGTGAAGAGT 59.376 45.455 11.88 11.88 44.81 3.24
817 4771 2.983136 CAGCAACTCGTACAGTGAAGAG 59.017 50.000 0.00 4.98 34.56 2.85
818 4772 2.862530 GCAGCAACTCGTACAGTGAAGA 60.863 50.000 0.00 0.00 34.56 2.87
819 4773 1.457303 GCAGCAACTCGTACAGTGAAG 59.543 52.381 0.00 0.00 34.56 3.02
820 4774 1.202475 TGCAGCAACTCGTACAGTGAA 60.202 47.619 0.00 0.00 34.56 3.18
821 4775 0.387565 TGCAGCAACTCGTACAGTGA 59.612 50.000 0.00 0.00 34.56 3.41
822 4776 0.786581 CTGCAGCAACTCGTACAGTG 59.213 55.000 0.00 0.00 34.56 3.66
823 4777 0.946221 GCTGCAGCAACTCGTACAGT 60.946 55.000 33.36 0.00 41.59 3.55
824 4778 1.630244 GGCTGCAGCAACTCGTACAG 61.630 60.000 37.63 0.00 44.36 2.74
825 4779 1.667830 GGCTGCAGCAACTCGTACA 60.668 57.895 37.63 0.00 44.36 2.90
826 4780 2.391389 GGGCTGCAGCAACTCGTAC 61.391 63.158 37.63 18.74 44.36 3.67
827 4781 2.047274 GGGCTGCAGCAACTCGTA 60.047 61.111 37.63 0.00 44.36 3.43
828 4782 4.254709 TGGGCTGCAGCAACTCGT 62.255 61.111 37.63 0.00 44.36 4.18
829 4783 3.429141 CTGGGCTGCAGCAACTCG 61.429 66.667 37.63 20.42 44.36 4.18
830 4784 3.745803 GCTGGGCTGCAGCAACTC 61.746 66.667 37.63 23.46 44.49 3.01
852 4806 4.247380 GAGATGGGCTGGGCTCGG 62.247 72.222 0.00 0.00 0.00 4.63
853 4807 2.728443 GATGAGATGGGCTGGGCTCG 62.728 65.000 0.00 0.00 0.00 5.03
854 4808 1.072852 GATGAGATGGGCTGGGCTC 59.927 63.158 0.00 0.00 0.00 4.70
855 4809 2.815945 CGATGAGATGGGCTGGGCT 61.816 63.158 0.00 0.00 0.00 5.19
856 4810 2.281345 CGATGAGATGGGCTGGGC 60.281 66.667 0.00 0.00 0.00 5.36
857 4811 1.070445 GACGATGAGATGGGCTGGG 59.930 63.158 0.00 0.00 0.00 4.45
858 4812 0.249784 CTGACGATGAGATGGGCTGG 60.250 60.000 0.00 0.00 0.00 4.85
859 4813 0.749049 TCTGACGATGAGATGGGCTG 59.251 55.000 0.00 0.00 0.00 4.85
860 4814 0.749649 GTCTGACGATGAGATGGGCT 59.250 55.000 0.00 0.00 0.00 5.19
861 4815 0.596083 CGTCTGACGATGAGATGGGC 60.596 60.000 24.86 0.00 46.05 5.36
862 4816 1.025041 TCGTCTGACGATGAGATGGG 58.975 55.000 27.26 0.00 46.73 4.00
872 4826 1.225881 CAGTCTCGCTCGTCTGACG 60.226 63.158 23.33 23.33 44.19 4.35
873 4827 0.179210 GTCAGTCTCGCTCGTCTGAC 60.179 60.000 18.99 18.99 45.86 3.51
874 4828 0.602905 TGTCAGTCTCGCTCGTCTGA 60.603 55.000 9.07 9.07 35.06 3.27
875 4829 0.238553 TTGTCAGTCTCGCTCGTCTG 59.761 55.000 0.00 0.00 0.00 3.51
876 4830 0.519519 CTTGTCAGTCTCGCTCGTCT 59.480 55.000 0.00 0.00 0.00 4.18
877 4831 0.238817 ACTTGTCAGTCTCGCTCGTC 59.761 55.000 0.00 0.00 0.00 4.20
878 4832 0.039978 CACTTGTCAGTCTCGCTCGT 60.040 55.000 0.00 0.00 0.00 4.18
879 4833 0.730834 CCACTTGTCAGTCTCGCTCG 60.731 60.000 0.00 0.00 0.00 5.03
880 4834 0.389166 CCCACTTGTCAGTCTCGCTC 60.389 60.000 0.00 0.00 0.00 5.03
881 4835 1.668294 CCCACTTGTCAGTCTCGCT 59.332 57.895 0.00 0.00 0.00 4.93
882 4836 1.374758 CCCCACTTGTCAGTCTCGC 60.375 63.158 0.00 0.00 0.00 5.03
883 4837 0.038159 GACCCCACTTGTCAGTCTCG 60.038 60.000 0.00 0.00 32.91 4.04
884 4838 1.048601 TGACCCCACTTGTCAGTCTC 58.951 55.000 0.00 0.00 37.80 3.36
885 4839 0.759346 GTGACCCCACTTGTCAGTCT 59.241 55.000 0.00 0.00 42.99 3.24
886 4840 3.307379 GTGACCCCACTTGTCAGTC 57.693 57.895 0.00 0.00 42.99 3.51
928 4882 1.203364 AGGAGATGGGTGAAGTGGTCT 60.203 52.381 0.00 0.00 0.00 3.85
938 4892 0.842030 TTGTGCTGGAGGAGATGGGT 60.842 55.000 0.00 0.00 0.00 4.51
939 4893 0.107312 CTTGTGCTGGAGGAGATGGG 60.107 60.000 0.00 0.00 0.00 4.00
941 4895 0.747283 GGCTTGTGCTGGAGGAGATG 60.747 60.000 0.00 0.00 39.59 2.90
942 4896 1.606531 GGCTTGTGCTGGAGGAGAT 59.393 57.895 0.00 0.00 39.59 2.75
943 4897 2.596851 GGGCTTGTGCTGGAGGAGA 61.597 63.158 0.00 0.00 39.59 3.71
944 4898 2.045536 GGGCTTGTGCTGGAGGAG 60.046 66.667 0.00 0.00 39.59 3.69
945 4899 2.129555 GAAGGGCTTGTGCTGGAGGA 62.130 60.000 0.00 0.00 39.59 3.71
946 4900 1.676967 GAAGGGCTTGTGCTGGAGG 60.677 63.158 0.00 0.00 39.59 4.30
947 4901 1.676967 GGAAGGGCTTGTGCTGGAG 60.677 63.158 0.00 0.00 39.59 3.86
950 4904 3.741476 GCGGAAGGGCTTGTGCTG 61.741 66.667 0.00 0.00 39.59 4.41
1005 4985 4.899239 ATGCAGCTACGGAGGCGC 62.899 66.667 0.00 0.00 34.52 6.53
1029 5009 1.071385 GAGGGGTACGAGAGGATACGA 59.929 57.143 0.00 0.00 46.39 3.43
1061 5050 4.530857 GTCGGTGGATGGAGGCGG 62.531 72.222 0.00 0.00 0.00 6.13
1063 5052 2.187946 CAGTCGGTGGATGGAGGC 59.812 66.667 0.00 0.00 0.00 4.70
1068 5057 1.142748 GGAGAGCAGTCGGTGGATG 59.857 63.158 0.00 0.00 0.00 3.51
1069 5058 2.418910 CGGAGAGCAGTCGGTGGAT 61.419 63.158 0.00 0.00 0.00 3.41
1196 5200 2.610859 GGTGGGAGAGCTTGGGGA 60.611 66.667 0.00 0.00 0.00 4.81
1337 5341 3.751246 CGACGTTACGGGCCAGGA 61.751 66.667 10.20 0.00 0.00 3.86
1384 5775 0.391661 ATGAGCCGCTTGATGTCGTT 60.392 50.000 0.00 0.00 0.00 3.85
1385 5776 0.807667 GATGAGCCGCTTGATGTCGT 60.808 55.000 0.00 0.00 0.00 4.34
1550 5941 1.225745 GCGACGTTTGGCTTGATCG 60.226 57.895 0.00 0.00 0.00 3.69
1560 5951 4.961511 TGCAGGAGCGCGACGTTT 62.962 61.111 12.10 0.00 46.23 3.60
1665 6056 2.572095 CTTCGGCGCACTCCACCATA 62.572 60.000 10.83 0.00 0.00 2.74
1782 6174 2.135933 GACCACCTGAACGTCTTCTTG 58.864 52.381 0.00 0.00 0.00 3.02
1843 6236 0.532573 TCCTTAGAACGCCTCAGCAG 59.467 55.000 0.00 0.00 39.83 4.24
2018 6411 1.229315 ATAGTAGTCCCGCTCGCGAG 61.229 60.000 31.37 31.37 42.83 5.03
2025 6418 4.501071 TGAAAACTGAATAGTAGTCCCGC 58.499 43.478 0.00 0.00 35.69 6.13
2382 6800 3.755378 AGGCAATGCTTTCTTGTCTACTG 59.245 43.478 4.82 0.00 36.82 2.74
2440 6858 5.046159 TCCTATACGGAAGTTGGAAACACAT 60.046 40.000 0.00 0.00 46.40 3.21
2509 6927 7.114866 TGAACGGAAACCATACTGATATACA 57.885 36.000 0.00 0.00 0.00 2.29
2557 6975 5.816777 TGGAAAGCAAAAGACAATGAAAAGG 59.183 36.000 0.00 0.00 0.00 3.11
2559 6977 5.584251 GGTGGAAAGCAAAAGACAATGAAAA 59.416 36.000 0.00 0.00 0.00 2.29
2575 6993 3.875134 ACTGAACTTACAACGGTGGAAAG 59.125 43.478 4.97 10.85 0.00 2.62
2647 7296 6.933514 AGGGAAAGAAATCAAAAGGCATAA 57.066 33.333 0.00 0.00 0.00 1.90
2774 7424 7.994334 TGATCAATGACAGATGTAAATGATGGA 59.006 33.333 5.73 0.00 0.00 3.41
2817 7467 7.047891 TGACAAGACTAACTCATGTCACTTTT 58.952 34.615 4.68 0.00 39.75 2.27
2820 7470 5.791336 TGACAAGACTAACTCATGTCACT 57.209 39.130 4.68 0.00 39.75 3.41
2830 7480 6.533367 TGTTTGGCAAAAATGACAAGACTAAC 59.467 34.615 15.29 0.00 38.16 2.34
2954 8444 2.423577 AGTAATGAACCGTTGACCTGC 58.576 47.619 0.00 0.00 0.00 4.85
2970 8460 7.809331 CAGTTTTTCATAGCAAGCATCAAGTAA 59.191 33.333 0.00 0.00 0.00 2.24
2972 8462 6.154445 CAGTTTTTCATAGCAAGCATCAAGT 58.846 36.000 0.00 0.00 0.00 3.16
2973 8463 6.154445 ACAGTTTTTCATAGCAAGCATCAAG 58.846 36.000 0.00 0.00 0.00 3.02
2974 8464 6.088016 ACAGTTTTTCATAGCAAGCATCAA 57.912 33.333 0.00 0.00 0.00 2.57
3086 8595 1.153549 GCGGGCAACAGAGGACTAG 60.154 63.158 0.00 0.00 39.74 2.57
3113 8622 4.019321 CCATTGAACCCCAACTTCTAGAGA 60.019 45.833 0.00 0.00 37.63 3.10
3114 8623 4.265073 CCATTGAACCCCAACTTCTAGAG 58.735 47.826 0.00 0.00 37.63 2.43
3115 8624 3.010138 CCCATTGAACCCCAACTTCTAGA 59.990 47.826 0.00 0.00 37.63 2.43
3116 8625 3.010138 TCCCATTGAACCCCAACTTCTAG 59.990 47.826 0.00 0.00 37.63 2.43
3117 8626 2.990284 TCCCATTGAACCCCAACTTCTA 59.010 45.455 0.00 0.00 37.63 2.10
3121 8630 1.158007 ACTCCCATTGAACCCCAACT 58.842 50.000 0.00 0.00 37.63 3.16
3127 8636 0.991920 TCCCTCACTCCCATTGAACC 59.008 55.000 0.00 0.00 0.00 3.62
3135 8644 1.545651 CCAGTTGTTTCCCTCACTCCC 60.546 57.143 0.00 0.00 0.00 4.30


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.