Multiple sequence alignment - TraesCS6B01G027300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G027300 chr6B 100.000 3536 0 0 1 3536 16263464 16266999 0.000000e+00 6530.0
1 TraesCS6B01G027300 chr6B 94.674 751 32 1 2794 3536 15235993 15235243 0.000000e+00 1158.0
2 TraesCS6B01G027300 chr6B 95.402 261 12 0 1 261 15236246 15235986 1.960000e-112 416.0
3 TraesCS6B01G027300 chr6B 87.449 247 31 0 1 247 65211914 65211668 5.780000e-73 285.0
4 TraesCS6B01G027300 chr6B 77.193 114 22 4 105 217 169237151 169237261 2.950000e-06 63.9
5 TraesCS6B01G027300 chr5A 98.736 2532 23 7 262 2793 523078751 523081273 0.000000e+00 4490.0
6 TraesCS6B01G027300 chr5A 89.991 1109 59 21 261 1340 456679994 456678909 0.000000e+00 1386.0
7 TraesCS6B01G027300 chr5A 92.388 289 20 2 2505 2793 440977471 440977757 9.140000e-111 411.0
8 TraesCS6B01G027300 chr4A 98.355 1459 22 2 1336 2793 650658891 650660348 0.000000e+00 2560.0
9 TraesCS6B01G027300 chr4A 97.178 1453 38 3 1336 2788 19535360 19536809 0.000000e+00 2453.0
10 TraesCS6B01G027300 chr4A 93.627 1114 35 11 261 1340 650656841 650657952 0.000000e+00 1631.0
11 TraesCS6B01G027300 chr4A 95.893 560 22 1 781 1340 19533864 19534422 0.000000e+00 905.0
12 TraesCS6B01G027300 chr4A 88.476 538 28 14 262 773 19533358 19533887 1.390000e-173 619.0
13 TraesCS6B01G027300 chr1D 98.080 1458 26 2 1336 2793 27682898 27681443 0.000000e+00 2536.0
14 TraesCS6B01G027300 chr1D 96.556 784 22 3 557 1340 27684613 27683835 0.000000e+00 1293.0
15 TraesCS6B01G027300 chr1D 86.617 949 70 31 262 1191 467932718 467931808 0.000000e+00 996.0
16 TraesCS6B01G027300 chr1A 97.737 1458 30 2 1336 2793 537445872 537447326 0.000000e+00 2507.0
17 TraesCS6B01G027300 chr3A 97.668 1458 31 2 1336 2793 57561779 57563233 0.000000e+00 2501.0
18 TraesCS6B01G027300 chr3A 93.548 1116 36 8 259 1340 57559727 57560840 0.000000e+00 1629.0
19 TraesCS6B01G027300 chr3A 94.435 575 25 3 747 1321 714380590 714381157 0.000000e+00 878.0
20 TraesCS6B01G027300 chr3A 86.015 522 34 16 262 754 714379896 714380407 1.120000e-144 523.0
21 TraesCS6B01G027300 chr2B 97.188 1458 36 2 1336 2793 39938397 39939849 0.000000e+00 2460.0
22 TraesCS6B01G027300 chr2B 89.157 581 25 9 262 816 39937779 39938347 0.000000e+00 689.0
23 TraesCS6B01G027300 chr7D 92.238 992 71 6 1336 2325 566129982 566128995 0.000000e+00 1400.0
24 TraesCS6B01G027300 chr4D 84.609 1215 184 2 1336 2548 301347493 301346280 0.000000e+00 1205.0
25 TraesCS6B01G027300 chr3B 85.728 1016 95 24 260 1261 766065111 766066090 0.000000e+00 1027.0
26 TraesCS6B01G027300 chr3B 96.965 593 18 0 748 1340 750995513 750994921 0.000000e+00 996.0
27 TraesCS6B01G027300 chr3B 86.616 523 21 21 262 754 750996335 750995832 1.870000e-147 532.0
28 TraesCS6B01G027300 chr3B 100.000 30 0 0 1250 1279 766094368 766094397 4.930000e-04 56.5
29 TraesCS6B01G027300 chr7A 95.946 370 15 0 2424 2793 68224476 68224107 5.050000e-168 601.0
30 TraesCS6B01G027300 chrUn 82.828 693 87 16 2795 3456 101045161 101045852 3.040000e-165 592.0
31 TraesCS6B01G027300 chrUn 84.274 248 39 0 1 248 101044919 101045166 3.530000e-60 243.0
32 TraesCS6B01G027300 chr1B 78.882 322 30 26 262 552 15515408 15515722 2.170000e-42 183.0
33 TraesCS6B01G027300 chr6D 78.274 336 36 17 3237 3536 33994431 33994765 7.800000e-42 182.0
34 TraesCS6B01G027300 chr6A 82.895 76 8 3 104 177 577731919 577731991 2.950000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G027300 chr6B 16263464 16266999 3535 False 6530.000000 6530 100.0000 1 3536 1 chr6B.!!$F1 3535
1 TraesCS6B01G027300 chr6B 15235243 15236246 1003 True 787.000000 1158 95.0380 1 3536 2 chr6B.!!$R2 3535
2 TraesCS6B01G027300 chr5A 523078751 523081273 2522 False 4490.000000 4490 98.7360 262 2793 1 chr5A.!!$F2 2531
3 TraesCS6B01G027300 chr5A 456678909 456679994 1085 True 1386.000000 1386 89.9910 261 1340 1 chr5A.!!$R1 1079
4 TraesCS6B01G027300 chr4A 650656841 650660348 3507 False 2095.500000 2560 95.9910 261 2793 2 chr4A.!!$F2 2532
5 TraesCS6B01G027300 chr4A 19533358 19536809 3451 False 1325.666667 2453 93.8490 262 2788 3 chr4A.!!$F1 2526
6 TraesCS6B01G027300 chr1D 27681443 27684613 3170 True 1914.500000 2536 97.3180 557 2793 2 chr1D.!!$R2 2236
7 TraesCS6B01G027300 chr1D 467931808 467932718 910 True 996.000000 996 86.6170 262 1191 1 chr1D.!!$R1 929
8 TraesCS6B01G027300 chr1A 537445872 537447326 1454 False 2507.000000 2507 97.7370 1336 2793 1 chr1A.!!$F1 1457
9 TraesCS6B01G027300 chr3A 57559727 57563233 3506 False 2065.000000 2501 95.6080 259 2793 2 chr3A.!!$F1 2534
10 TraesCS6B01G027300 chr3A 714379896 714381157 1261 False 700.500000 878 90.2250 262 1321 2 chr3A.!!$F2 1059
11 TraesCS6B01G027300 chr2B 39937779 39939849 2070 False 1574.500000 2460 93.1725 262 2793 2 chr2B.!!$F1 2531
12 TraesCS6B01G027300 chr7D 566128995 566129982 987 True 1400.000000 1400 92.2380 1336 2325 1 chr7D.!!$R1 989
13 TraesCS6B01G027300 chr4D 301346280 301347493 1213 True 1205.000000 1205 84.6090 1336 2548 1 chr4D.!!$R1 1212
14 TraesCS6B01G027300 chr3B 766065111 766066090 979 False 1027.000000 1027 85.7280 260 1261 1 chr3B.!!$F1 1001
15 TraesCS6B01G027300 chr3B 750994921 750996335 1414 True 764.000000 996 91.7905 262 1340 2 chr3B.!!$R1 1078
16 TraesCS6B01G027300 chrUn 101044919 101045852 933 False 417.500000 592 83.5510 1 3456 2 chrUn.!!$F1 3455

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
826 1402 1.340893 CCCCAAAATTCCCAATTGGCC 60.341 52.381 19.75 0.0 41.8 5.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2806 4750 0.321919 GATGAGGAGGTGTTGCAGCA 60.322 55.0 0.0 0.0 33.95 4.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
139 140 3.225608 CTCCAAGGAGGGGTACGAT 57.774 57.895 8.28 0.00 38.51 3.73
201 202 2.450160 CAGGATTTTTATCCGCAACGC 58.550 47.619 0.00 0.00 45.27 4.84
826 1402 1.340893 CCCCAAAATTCCCAATTGGCC 60.341 52.381 19.75 0.00 41.80 5.36
1192 1779 4.028131 ACCTATAACATTCCGAGGTGTCA 58.972 43.478 0.00 0.00 39.09 3.58
1357 2887 4.082733 GGCATCCAAAGAAGTGGTTTCTAC 60.083 45.833 0.00 0.00 45.41 2.59
1981 3922 4.192317 GACCAAGGAGCATTACTTTCGAT 58.808 43.478 0.00 0.00 0.00 3.59
1984 3925 4.635765 CCAAGGAGCATTACTTTCGATTCA 59.364 41.667 0.00 0.00 0.00 2.57
2402 4345 7.048629 TGAAGATCATTAAAACAAGGTTGCA 57.951 32.000 0.00 0.00 0.00 4.08
2587 4530 6.872920 TGGTCAAATGGTATGGCTTATTTTC 58.127 36.000 0.00 0.00 0.00 2.29
2793 4737 1.172180 TTTTCAAGCTCCGCCACTGG 61.172 55.000 0.00 0.00 0.00 4.00
2794 4738 3.551496 TTCAAGCTCCGCCACTGGG 62.551 63.158 0.00 0.00 37.18 4.45
2819 4763 3.730761 CCGCTGCTGCAACACCTC 61.731 66.667 16.29 0.00 39.64 3.85
2820 4764 3.730761 CGCTGCTGCAACACCTCC 61.731 66.667 16.29 0.00 39.64 4.30
2821 4765 2.282040 GCTGCTGCAACACCTCCT 60.282 61.111 11.11 0.00 39.41 3.69
2822 4766 2.331132 GCTGCTGCAACACCTCCTC 61.331 63.158 11.11 0.00 39.41 3.71
2823 4767 1.071987 CTGCTGCAACACCTCCTCA 59.928 57.895 3.02 0.00 0.00 3.86
2824 4768 0.322277 CTGCTGCAACACCTCCTCAT 60.322 55.000 3.02 0.00 0.00 2.90
2825 4769 0.321919 TGCTGCAACACCTCCTCATC 60.322 55.000 0.00 0.00 0.00 2.92
2826 4770 0.321919 GCTGCAACACCTCCTCATCA 60.322 55.000 0.00 0.00 0.00 3.07
2827 4771 1.681166 GCTGCAACACCTCCTCATCAT 60.681 52.381 0.00 0.00 0.00 2.45
2828 4772 2.014857 CTGCAACACCTCCTCATCATG 58.985 52.381 0.00 0.00 0.00 3.07
2829 4773 1.352017 TGCAACACCTCCTCATCATGT 59.648 47.619 0.00 0.00 0.00 3.21
2830 4774 2.012673 GCAACACCTCCTCATCATGTC 58.987 52.381 0.00 0.00 0.00 3.06
2831 4775 2.274437 CAACACCTCCTCATCATGTCG 58.726 52.381 0.00 0.00 0.00 4.35
2832 4776 1.852633 ACACCTCCTCATCATGTCGA 58.147 50.000 0.00 0.00 0.00 4.20
2833 4777 2.392662 ACACCTCCTCATCATGTCGAT 58.607 47.619 0.00 0.00 33.27 3.59
2842 4786 3.841624 CATCATGTCGATGGTGTAACG 57.158 47.619 0.00 0.00 46.73 3.18
2843 4787 3.443976 CATCATGTCGATGGTGTAACGA 58.556 45.455 0.00 0.00 46.73 3.85
2844 4788 3.579335 TCATGTCGATGGTGTAACGAA 57.421 42.857 0.00 0.00 38.12 3.85
2845 4789 3.915536 TCATGTCGATGGTGTAACGAAA 58.084 40.909 0.00 0.00 38.12 3.46
2846 4790 3.676172 TCATGTCGATGGTGTAACGAAAC 59.324 43.478 0.00 0.00 38.12 2.78
2847 4791 3.095102 TGTCGATGGTGTAACGAAACA 57.905 42.857 0.00 0.00 38.12 2.83
2848 4792 3.655486 TGTCGATGGTGTAACGAAACAT 58.345 40.909 0.00 0.00 38.12 2.71
2849 4793 3.676172 TGTCGATGGTGTAACGAAACATC 59.324 43.478 0.00 0.00 38.12 3.06
2852 4796 4.240883 GATGGTGTAACGAAACATCGAC 57.759 45.455 5.11 0.00 38.12 4.20
2853 4797 3.095102 TGGTGTAACGAAACATCGACA 57.905 42.857 5.11 0.00 38.12 4.35
2854 4798 2.796031 TGGTGTAACGAAACATCGACAC 59.204 45.455 12.16 12.16 38.94 3.67
2855 4799 2.156310 GGTGTAACGAAACATCGACACC 59.844 50.000 19.59 19.59 46.19 4.16
2856 4800 2.156310 GTGTAACGAAACATCGACACCC 59.844 50.000 5.11 0.00 35.91 4.61
2857 4801 2.036217 TGTAACGAAACATCGACACCCT 59.964 45.455 5.11 0.00 36.85 4.34
2858 4802 1.508632 AACGAAACATCGACACCCTG 58.491 50.000 5.11 0.00 36.85 4.45
2859 4803 0.391597 ACGAAACATCGACACCCTGT 59.608 50.000 5.11 0.00 36.85 4.00
2860 4804 1.614903 ACGAAACATCGACACCCTGTA 59.385 47.619 5.11 0.00 36.85 2.74
2861 4805 1.990563 CGAAACATCGACACCCTGTAC 59.009 52.381 0.00 0.00 34.64 2.90
2862 4806 2.608506 CGAAACATCGACACCCTGTACA 60.609 50.000 0.00 0.00 34.64 2.90
2863 4807 2.743636 AACATCGACACCCTGTACAG 57.256 50.000 16.34 16.34 0.00 2.74
2864 4808 0.246635 ACATCGACACCCTGTACAGC 59.753 55.000 17.86 2.36 0.00 4.40
2865 4809 0.460284 CATCGACACCCTGTACAGCC 60.460 60.000 17.86 2.87 0.00 4.85
2866 4810 1.945354 ATCGACACCCTGTACAGCCG 61.945 60.000 17.86 11.55 0.00 5.52
2867 4811 2.632544 CGACACCCTGTACAGCCGA 61.633 63.158 17.86 0.00 0.00 5.54
2868 4812 1.215647 GACACCCTGTACAGCCGAG 59.784 63.158 17.86 10.17 0.00 4.63
2869 4813 2.227089 GACACCCTGTACAGCCGAGG 62.227 65.000 17.86 14.95 0.00 4.63
2870 4814 1.982395 CACCCTGTACAGCCGAGGA 60.982 63.158 17.86 0.00 0.00 3.71
2871 4815 1.229082 ACCCTGTACAGCCGAGGAA 60.229 57.895 17.86 0.00 0.00 3.36
2872 4816 1.218316 CCCTGTACAGCCGAGGAAC 59.782 63.158 17.86 0.00 0.00 3.62
2873 4817 1.218316 CCTGTACAGCCGAGGAACC 59.782 63.158 17.86 0.00 0.00 3.62
2874 4818 1.541310 CCTGTACAGCCGAGGAACCA 61.541 60.000 17.86 0.00 0.00 3.67
2875 4819 0.389948 CTGTACAGCCGAGGAACCAC 60.390 60.000 10.54 0.00 0.00 4.16
2876 4820 1.116536 TGTACAGCCGAGGAACCACA 61.117 55.000 0.00 0.00 0.00 4.17
2877 4821 0.249398 GTACAGCCGAGGAACCACAT 59.751 55.000 0.00 0.00 0.00 3.21
2878 4822 0.981183 TACAGCCGAGGAACCACATT 59.019 50.000 0.00 0.00 0.00 2.71
2879 4823 0.321653 ACAGCCGAGGAACCACATTC 60.322 55.000 0.00 0.00 36.48 2.67
2889 4833 2.369394 GAACCACATTCCATCTCCACC 58.631 52.381 0.00 0.00 0.00 4.61
2890 4834 1.673767 ACCACATTCCATCTCCACCT 58.326 50.000 0.00 0.00 0.00 4.00
2891 4835 1.561542 ACCACATTCCATCTCCACCTC 59.438 52.381 0.00 0.00 0.00 3.85
2892 4836 1.842562 CCACATTCCATCTCCACCTCT 59.157 52.381 0.00 0.00 0.00 3.69
2893 4837 2.240667 CCACATTCCATCTCCACCTCTT 59.759 50.000 0.00 0.00 0.00 2.85
2894 4838 3.276857 CACATTCCATCTCCACCTCTTG 58.723 50.000 0.00 0.00 0.00 3.02
2895 4839 2.295885 CATTCCATCTCCACCTCTTGC 58.704 52.381 0.00 0.00 0.00 4.01
2896 4840 0.250234 TTCCATCTCCACCTCTTGCG 59.750 55.000 0.00 0.00 0.00 4.85
2897 4841 1.817099 CCATCTCCACCTCTTGCGC 60.817 63.158 0.00 0.00 0.00 6.09
2898 4842 2.169789 CATCTCCACCTCTTGCGCG 61.170 63.158 0.00 0.00 0.00 6.86
2899 4843 2.351244 ATCTCCACCTCTTGCGCGA 61.351 57.895 12.10 0.00 0.00 5.87
2900 4844 1.680522 ATCTCCACCTCTTGCGCGAT 61.681 55.000 12.10 0.00 0.00 4.58
2901 4845 1.880340 CTCCACCTCTTGCGCGATC 60.880 63.158 12.10 0.00 0.00 3.69
2902 4846 3.257561 CCACCTCTTGCGCGATCG 61.258 66.667 12.10 11.69 39.07 3.69
2903 4847 2.202610 CACCTCTTGCGCGATCGA 60.203 61.111 21.57 0.06 38.10 3.59
2904 4848 2.103143 ACCTCTTGCGCGATCGAG 59.897 61.111 21.57 18.10 38.10 4.04
2905 4849 2.407428 ACCTCTTGCGCGATCGAGA 61.407 57.895 23.47 13.12 38.10 4.04
2906 4850 1.007964 CCTCTTGCGCGATCGAGAT 60.008 57.895 23.47 0.00 38.10 2.75
2907 4851 1.001240 CCTCTTGCGCGATCGAGATC 61.001 60.000 23.47 6.28 38.10 2.75
2908 4852 0.040514 CTCTTGCGCGATCGAGATCT 60.041 55.000 23.47 0.00 38.10 2.75
2909 4853 1.195674 CTCTTGCGCGATCGAGATCTA 59.804 52.381 23.47 3.81 38.10 1.98
2910 4854 1.195674 TCTTGCGCGATCGAGATCTAG 59.804 52.381 23.47 11.55 38.10 2.43
2911 4855 0.386100 TTGCGCGATCGAGATCTAGC 60.386 55.000 23.47 12.90 37.92 3.42
2912 4856 1.207848 GCGCGATCGAGATCTAGCA 59.792 57.895 23.47 0.00 37.61 3.49
2913 4857 0.792729 GCGCGATCGAGATCTAGCAG 60.793 60.000 23.47 10.25 37.61 4.24
2914 4858 0.515127 CGCGATCGAGATCTAGCAGT 59.485 55.000 21.57 0.00 38.10 4.40
2915 4859 1.727335 CGCGATCGAGATCTAGCAGTA 59.273 52.381 21.57 0.00 38.10 2.74
2916 4860 2.473212 CGCGATCGAGATCTAGCAGTAC 60.473 54.545 21.57 0.00 38.10 2.73
2917 4861 2.159626 GCGATCGAGATCTAGCAGTACC 60.160 54.545 21.57 0.00 35.72 3.34
2918 4862 3.067833 CGATCGAGATCTAGCAGTACCA 58.932 50.000 10.26 0.00 35.72 3.25
2919 4863 3.124466 CGATCGAGATCTAGCAGTACCAG 59.876 52.174 10.26 0.00 35.72 4.00
2920 4864 2.222886 TCGAGATCTAGCAGTACCAGC 58.777 52.381 0.00 0.00 0.00 4.85
2921 4865 1.268352 CGAGATCTAGCAGTACCAGCC 59.732 57.143 0.00 0.00 0.00 4.85
2922 4866 2.593026 GAGATCTAGCAGTACCAGCCT 58.407 52.381 0.00 0.00 0.00 4.58
2923 4867 3.757270 GAGATCTAGCAGTACCAGCCTA 58.243 50.000 0.00 0.00 0.00 3.93
2924 4868 3.756434 GAGATCTAGCAGTACCAGCCTAG 59.244 52.174 0.00 6.29 0.00 3.02
2925 4869 2.366640 TCTAGCAGTACCAGCCTAGG 57.633 55.000 3.67 3.67 0.00 3.02
2926 4870 0.676736 CTAGCAGTACCAGCCTAGGC 59.323 60.000 27.19 27.19 42.33 3.93
2936 4880 3.647367 GCCTAGGCTCCATCACCA 58.353 61.111 27.17 0.00 38.26 4.17
2937 4881 1.449353 GCCTAGGCTCCATCACCAG 59.551 63.158 27.17 0.00 38.26 4.00
2938 4882 1.449353 CCTAGGCTCCATCACCAGC 59.551 63.158 0.00 0.00 34.65 4.85
2939 4883 1.340399 CCTAGGCTCCATCACCAGCA 61.340 60.000 0.00 0.00 37.38 4.41
2940 4884 0.179062 CTAGGCTCCATCACCAGCAC 60.179 60.000 0.00 0.00 37.38 4.40
2941 4885 1.960040 TAGGCTCCATCACCAGCACG 61.960 60.000 0.00 0.00 37.38 5.34
2942 4886 3.503363 GCTCCATCACCAGCACGC 61.503 66.667 0.00 0.00 35.56 5.34
2943 4887 2.821366 CTCCATCACCAGCACGCC 60.821 66.667 0.00 0.00 0.00 5.68
2944 4888 3.610619 CTCCATCACCAGCACGCCA 62.611 63.158 0.00 0.00 0.00 5.69
2945 4889 2.672651 CCATCACCAGCACGCCAA 60.673 61.111 0.00 0.00 0.00 4.52
2946 4890 2.693762 CCATCACCAGCACGCCAAG 61.694 63.158 0.00 0.00 0.00 3.61
2947 4891 2.360350 ATCACCAGCACGCCAAGG 60.360 61.111 0.00 0.00 0.00 3.61
2958 4902 4.547367 GCCAAGGCCGCCGATACT 62.547 66.667 3.05 0.00 34.56 2.12
2959 4903 2.588877 CCAAGGCCGCCGATACTG 60.589 66.667 3.05 0.00 0.00 2.74
2960 4904 2.588877 CAAGGCCGCCGATACTGG 60.589 66.667 3.05 0.00 0.00 4.00
2961 4905 2.762459 AAGGCCGCCGATACTGGA 60.762 61.111 3.05 0.00 0.00 3.86
2962 4906 2.363975 AAGGCCGCCGATACTGGAA 61.364 57.895 3.05 0.00 0.00 3.53
2963 4907 2.280186 GGCCGCCGATACTGGAAG 60.280 66.667 0.00 0.00 42.29 3.46
2964 4908 2.967615 GCCGCCGATACTGGAAGC 60.968 66.667 0.00 0.00 37.60 3.86
2965 4909 2.499205 CCGCCGATACTGGAAGCA 59.501 61.111 0.00 0.00 37.60 3.91
2966 4910 1.069765 CCGCCGATACTGGAAGCAT 59.930 57.895 0.00 0.00 37.60 3.79
2967 4911 0.946221 CCGCCGATACTGGAAGCATC 60.946 60.000 0.00 0.00 37.60 3.91
2968 4912 0.249447 CGCCGATACTGGAAGCATCA 60.249 55.000 0.00 0.00 36.49 3.07
2969 4913 1.221414 GCCGATACTGGAAGCATCAC 58.779 55.000 0.00 0.00 36.49 3.06
2970 4914 1.871080 CCGATACTGGAAGCATCACC 58.129 55.000 0.00 0.00 36.49 4.02
2971 4915 1.414181 CCGATACTGGAAGCATCACCT 59.586 52.381 0.00 0.00 36.49 4.00
2972 4916 2.477825 CGATACTGGAAGCATCACCTG 58.522 52.381 0.00 0.00 36.49 4.00
2973 4917 2.101415 CGATACTGGAAGCATCACCTGA 59.899 50.000 0.00 0.00 36.49 3.86
2974 4918 3.244009 CGATACTGGAAGCATCACCTGAT 60.244 47.826 0.00 0.00 36.49 2.90
2975 4919 2.706339 ACTGGAAGCATCACCTGATC 57.294 50.000 0.00 0.00 37.60 2.92
2976 4920 1.911357 ACTGGAAGCATCACCTGATCA 59.089 47.619 0.00 0.00 37.60 2.92
2977 4921 2.286872 CTGGAAGCATCACCTGATCAC 58.713 52.381 0.00 0.00 31.21 3.06
2978 4922 1.629861 TGGAAGCATCACCTGATCACA 59.370 47.619 0.00 0.00 31.21 3.58
2979 4923 2.012673 GGAAGCATCACCTGATCACAC 58.987 52.381 0.00 0.00 31.21 3.82
2980 4924 2.012673 GAAGCATCACCTGATCACACC 58.987 52.381 0.00 0.00 31.21 4.16
2981 4925 0.986527 AGCATCACCTGATCACACCA 59.013 50.000 0.00 0.00 31.21 4.17
2982 4926 1.089920 GCATCACCTGATCACACCAC 58.910 55.000 0.00 0.00 31.21 4.16
2983 4927 1.339438 GCATCACCTGATCACACCACT 60.339 52.381 0.00 0.00 31.21 4.00
2984 4928 2.625737 CATCACCTGATCACACCACTC 58.374 52.381 0.00 0.00 31.21 3.51
2985 4929 0.976641 TCACCTGATCACACCACTCC 59.023 55.000 0.00 0.00 0.00 3.85
2986 4930 0.390340 CACCTGATCACACCACTCCG 60.390 60.000 0.00 0.00 0.00 4.63
2987 4931 0.541998 ACCTGATCACACCACTCCGA 60.542 55.000 0.00 0.00 0.00 4.55
2988 4932 0.174389 CCTGATCACACCACTCCGAG 59.826 60.000 0.00 0.00 0.00 4.63
2989 4933 0.459237 CTGATCACACCACTCCGAGC 60.459 60.000 0.00 0.00 0.00 5.03
2990 4934 1.517257 GATCACACCACTCCGAGCG 60.517 63.158 0.00 0.00 0.00 5.03
2991 4935 2.890847 GATCACACCACTCCGAGCGG 62.891 65.000 1.74 1.74 0.00 5.52
2992 4936 4.742201 CACACCACTCCGAGCGGG 62.742 72.222 9.29 6.31 35.59 6.13
3008 4952 2.764128 GGCAGGGACCCAGATCGA 60.764 66.667 14.60 0.00 0.00 3.59
3009 4953 2.501610 GCAGGGACCCAGATCGAC 59.498 66.667 14.60 0.00 0.00 4.20
3010 4954 3.095347 GCAGGGACCCAGATCGACC 62.095 68.421 14.60 0.00 0.00 4.79
3011 4955 2.041819 AGGGACCCAGATCGACCC 60.042 66.667 14.60 0.00 40.71 4.46
3012 4956 3.162154 GGGACCCAGATCGACCCC 61.162 72.222 5.33 0.00 35.00 4.95
3013 4957 3.537874 GGACCCAGATCGACCCCG 61.538 72.222 0.00 0.00 37.07 5.73
3014 4958 3.537874 GACCCAGATCGACCCCGG 61.538 72.222 0.00 0.00 36.24 5.73
3015 4959 4.070265 ACCCAGATCGACCCCGGA 62.070 66.667 0.73 0.00 36.24 5.14
3016 4960 2.524394 CCCAGATCGACCCCGGAT 60.524 66.667 0.73 0.00 36.24 4.18
3017 4961 2.737180 CCAGATCGACCCCGGATG 59.263 66.667 0.73 0.00 36.24 3.51
3018 4962 2.737180 CAGATCGACCCCGGATGG 59.263 66.667 0.73 0.00 36.24 3.51
3019 4963 1.832608 CAGATCGACCCCGGATGGA 60.833 63.158 0.73 0.00 37.49 3.41
3020 4964 1.156330 AGATCGACCCCGGATGGAT 59.844 57.895 0.73 2.46 37.49 3.41
3021 4965 0.900647 AGATCGACCCCGGATGGATC 60.901 60.000 17.43 17.43 37.49 3.36
3022 4966 1.889530 GATCGACCCCGGATGGATCC 61.890 65.000 0.73 4.20 43.65 3.36
3035 4979 2.425143 TGGATCCAACTCCAATCAGC 57.575 50.000 13.46 0.00 42.36 4.26
3036 4980 1.634973 TGGATCCAACTCCAATCAGCA 59.365 47.619 13.46 0.00 42.36 4.41
3037 4981 2.019984 GGATCCAACTCCAATCAGCAC 58.980 52.381 6.95 0.00 35.24 4.40
3038 4982 2.019984 GATCCAACTCCAATCAGCACC 58.980 52.381 0.00 0.00 0.00 5.01
3039 4983 0.321564 TCCAACTCCAATCAGCACCG 60.322 55.000 0.00 0.00 0.00 4.94
3040 4984 1.503542 CAACTCCAATCAGCACCGC 59.496 57.895 0.00 0.00 0.00 5.68
3041 4985 1.675641 AACTCCAATCAGCACCGCC 60.676 57.895 0.00 0.00 0.00 6.13
3042 4986 3.197790 CTCCAATCAGCACCGCCG 61.198 66.667 0.00 0.00 0.00 6.46
3052 4996 4.481112 CACCGCCGCCAGCAATTC 62.481 66.667 0.00 0.00 44.04 2.17
3057 5001 4.794648 CCGCCAGCAATTCCCGGA 62.795 66.667 0.73 0.00 41.34 5.14
3058 5002 3.508840 CGCCAGCAATTCCCGGAC 61.509 66.667 0.73 0.00 0.00 4.79
3059 5003 3.140814 GCCAGCAATTCCCGGACC 61.141 66.667 0.73 0.00 0.00 4.46
3060 5004 2.824041 CCAGCAATTCCCGGACCG 60.824 66.667 6.99 6.99 0.00 4.79
3061 5005 2.046314 CAGCAATTCCCGGACCGT 60.046 61.111 13.94 0.00 0.00 4.83
3062 5006 1.219664 CAGCAATTCCCGGACCGTA 59.780 57.895 13.94 0.00 0.00 4.02
3063 5007 0.810031 CAGCAATTCCCGGACCGTAG 60.810 60.000 13.94 3.81 0.00 3.51
3064 5008 2.178235 GCAATTCCCGGACCGTAGC 61.178 63.158 13.94 3.58 0.00 3.58
3065 5009 1.523032 CAATTCCCGGACCGTAGCC 60.523 63.158 13.94 0.00 0.00 3.93
3066 5010 1.688187 AATTCCCGGACCGTAGCCT 60.688 57.895 13.94 0.00 0.00 4.58
3067 5011 1.683418 AATTCCCGGACCGTAGCCTC 61.683 60.000 13.94 0.00 0.00 4.70
3068 5012 4.828296 TCCCGGACCGTAGCCTCC 62.828 72.222 13.94 0.00 0.00 4.30
3092 5036 4.695231 CCGCTCCGACGACACGTT 62.695 66.667 0.00 0.00 41.37 3.99
3093 5037 3.164011 CGCTCCGACGACACGTTC 61.164 66.667 0.00 0.00 41.37 3.95
3094 5038 2.050714 GCTCCGACGACACGTTCA 60.051 61.111 0.00 0.00 41.37 3.18
3095 5039 2.362800 GCTCCGACGACACGTTCAC 61.363 63.158 0.00 0.00 41.37 3.18
3096 5040 1.728426 CTCCGACGACACGTTCACC 60.728 63.158 0.00 0.00 41.37 4.02
3097 5041 2.026445 CCGACGACACGTTCACCA 59.974 61.111 0.00 0.00 41.37 4.17
3098 5042 1.589461 CCGACGACACGTTCACCAA 60.589 57.895 0.00 0.00 41.37 3.67
3099 5043 0.942410 CCGACGACACGTTCACCAAT 60.942 55.000 0.00 0.00 41.37 3.16
3100 5044 0.160813 CGACGACACGTTCACCAATG 59.839 55.000 0.00 0.00 41.37 2.82
3101 5045 0.511221 GACGACACGTTCACCAATGG 59.489 55.000 0.00 0.00 41.37 3.16
3102 5046 0.105224 ACGACACGTTCACCAATGGA 59.895 50.000 6.16 0.00 36.35 3.41
3103 5047 0.511221 CGACACGTTCACCAATGGAC 59.489 55.000 6.16 0.00 0.00 4.02
3104 5048 0.872388 GACACGTTCACCAATGGACC 59.128 55.000 6.16 0.00 29.21 4.46
3105 5049 0.882927 ACACGTTCACCAATGGACCG 60.883 55.000 6.16 4.72 29.21 4.79
3106 5050 1.964373 ACGTTCACCAATGGACCGC 60.964 57.895 6.16 0.00 29.21 5.68
3107 5051 1.963855 CGTTCACCAATGGACCGCA 60.964 57.895 6.16 0.00 29.21 5.69
3108 5052 1.305219 CGTTCACCAATGGACCGCAT 61.305 55.000 6.16 0.00 29.21 4.73
3109 5053 1.745232 GTTCACCAATGGACCGCATA 58.255 50.000 6.16 0.00 0.00 3.14
3110 5054 2.088423 GTTCACCAATGGACCGCATAA 58.912 47.619 6.16 0.00 0.00 1.90
3111 5055 1.745232 TCACCAATGGACCGCATAAC 58.255 50.000 6.16 0.00 0.00 1.89
3112 5056 1.003696 TCACCAATGGACCGCATAACA 59.996 47.619 6.16 0.00 0.00 2.41
3113 5057 1.401552 CACCAATGGACCGCATAACAG 59.598 52.381 6.16 0.00 0.00 3.16
3114 5058 0.381801 CCAATGGACCGCATAACAGC 59.618 55.000 0.00 0.00 0.00 4.40
3115 5059 0.381801 CAATGGACCGCATAACAGCC 59.618 55.000 0.00 0.00 0.00 4.85
3116 5060 0.034574 AATGGACCGCATAACAGCCA 60.035 50.000 0.00 0.00 0.00 4.75
3117 5061 0.464373 ATGGACCGCATAACAGCCAG 60.464 55.000 0.00 0.00 0.00 4.85
3118 5062 1.078426 GGACCGCATAACAGCCAGT 60.078 57.895 0.00 0.00 0.00 4.00
3119 5063 1.369091 GGACCGCATAACAGCCAGTG 61.369 60.000 0.00 0.00 0.00 3.66
3120 5064 1.982073 GACCGCATAACAGCCAGTGC 61.982 60.000 0.00 0.00 37.95 4.40
3121 5065 2.764314 CCGCATAACAGCCAGTGCC 61.764 63.158 0.00 0.00 38.69 5.01
3122 5066 2.764314 CGCATAACAGCCAGTGCCC 61.764 63.158 0.00 0.00 38.69 5.36
3123 5067 2.418083 GCATAACAGCCAGTGCCCC 61.418 63.158 0.00 0.00 38.69 5.80
3124 5068 2.114670 CATAACAGCCAGTGCCCCG 61.115 63.158 0.00 0.00 38.69 5.73
3125 5069 2.602676 ATAACAGCCAGTGCCCCGT 61.603 57.895 0.00 0.00 38.69 5.28
3126 5070 2.536997 ATAACAGCCAGTGCCCCGTC 62.537 60.000 0.00 0.00 38.69 4.79
3141 5085 4.470050 GTCGTCGCTCGCGCAAAG 62.470 66.667 8.75 5.15 39.67 2.77
3142 5086 4.994201 TCGTCGCTCGCGCAAAGT 62.994 61.111 8.75 0.00 39.67 2.66
3143 5087 4.470050 CGTCGCTCGCGCAAAGTC 62.470 66.667 8.75 0.00 39.59 3.01
3144 5088 3.403057 GTCGCTCGCGCAAAGTCA 61.403 61.111 8.75 0.00 39.59 3.41
3145 5089 3.403057 TCGCTCGCGCAAAGTCAC 61.403 61.111 8.75 0.00 39.59 3.67
3146 5090 4.430423 CGCTCGCGCAAAGTCACC 62.430 66.667 8.75 0.00 35.30 4.02
3147 5091 3.044305 GCTCGCGCAAAGTCACCT 61.044 61.111 8.75 0.00 35.78 4.00
3148 5092 1.736645 GCTCGCGCAAAGTCACCTA 60.737 57.895 8.75 0.00 35.78 3.08
3149 5093 1.687494 GCTCGCGCAAAGTCACCTAG 61.687 60.000 8.75 0.00 35.78 3.02
3150 5094 0.388649 CTCGCGCAAAGTCACCTAGT 60.389 55.000 8.75 0.00 0.00 2.57
3151 5095 0.388134 TCGCGCAAAGTCACCTAGTC 60.388 55.000 8.75 0.00 0.00 2.59
3152 5096 1.674611 CGCGCAAAGTCACCTAGTCG 61.675 60.000 8.75 0.00 0.00 4.18
3153 5097 0.388134 GCGCAAAGTCACCTAGTCGA 60.388 55.000 0.30 0.00 0.00 4.20
3154 5098 1.933500 GCGCAAAGTCACCTAGTCGAA 60.934 52.381 0.30 0.00 0.00 3.71
3155 5099 1.719780 CGCAAAGTCACCTAGTCGAAC 59.280 52.381 0.00 0.00 0.00 3.95
3156 5100 1.719780 GCAAAGTCACCTAGTCGAACG 59.280 52.381 0.00 0.00 0.00 3.95
3157 5101 1.719780 CAAAGTCACCTAGTCGAACGC 59.280 52.381 0.00 0.00 0.00 4.84
3158 5102 0.243095 AAGTCACCTAGTCGAACGCC 59.757 55.000 0.00 0.00 0.00 5.68
3159 5103 1.513586 GTCACCTAGTCGAACGCCG 60.514 63.158 0.00 0.00 40.25 6.46
3160 5104 2.879462 CACCTAGTCGAACGCCGC 60.879 66.667 0.00 0.00 38.37 6.53
3161 5105 3.060615 ACCTAGTCGAACGCCGCT 61.061 61.111 0.00 0.00 38.37 5.52
3162 5106 1.746615 ACCTAGTCGAACGCCGCTA 60.747 57.895 0.00 0.00 38.37 4.26
3163 5107 1.298190 CCTAGTCGAACGCCGCTAC 60.298 63.158 0.00 0.00 38.37 3.58
3164 5108 1.298190 CTAGTCGAACGCCGCTACC 60.298 63.158 0.00 0.00 38.37 3.18
3165 5109 2.659017 CTAGTCGAACGCCGCTACCC 62.659 65.000 0.00 0.00 38.37 3.69
3168 5112 4.867599 CGAACGCCGCTACCCCTC 62.868 72.222 0.00 0.00 0.00 4.30
3169 5113 3.459063 GAACGCCGCTACCCCTCT 61.459 66.667 0.00 0.00 0.00 3.69
3170 5114 3.718210 GAACGCCGCTACCCCTCTG 62.718 68.421 0.00 0.00 0.00 3.35
3173 5117 3.866582 GCCGCTACCCCTCTGCAT 61.867 66.667 0.00 0.00 0.00 3.96
3174 5118 2.507854 GCCGCTACCCCTCTGCATA 61.508 63.158 0.00 0.00 0.00 3.14
3175 5119 1.668294 CCGCTACCCCTCTGCATAG 59.332 63.158 0.00 0.00 0.00 2.23
3176 5120 1.005630 CGCTACCCCTCTGCATAGC 60.006 63.158 4.93 4.93 37.32 2.97
3177 5121 1.373059 GCTACCCCTCTGCATAGCC 59.627 63.158 3.80 0.00 35.10 3.93
3178 5122 2.062070 CTACCCCTCTGCATAGCCC 58.938 63.158 0.00 0.00 0.00 5.19
3179 5123 0.764369 CTACCCCTCTGCATAGCCCA 60.764 60.000 0.00 0.00 0.00 5.36
3180 5124 0.327095 TACCCCTCTGCATAGCCCAA 60.327 55.000 0.00 0.00 0.00 4.12
3181 5125 1.152881 CCCCTCTGCATAGCCCAAC 60.153 63.158 0.00 0.00 0.00 3.77
3182 5126 1.152881 CCCTCTGCATAGCCCAACC 60.153 63.158 0.00 0.00 0.00 3.77
3183 5127 1.609239 CCTCTGCATAGCCCAACCA 59.391 57.895 0.00 0.00 0.00 3.67
3184 5128 0.184451 CCTCTGCATAGCCCAACCAT 59.816 55.000 0.00 0.00 0.00 3.55
3185 5129 1.315690 CTCTGCATAGCCCAACCATG 58.684 55.000 0.00 0.00 0.00 3.66
3186 5130 0.625316 TCTGCATAGCCCAACCATGT 59.375 50.000 0.00 0.00 0.00 3.21
3193 5137 2.438434 CCCAACCATGTCGCCTCC 60.438 66.667 0.00 0.00 0.00 4.30
3210 5154 1.519455 CCCACATCGGCGTCTTCTC 60.519 63.158 6.85 0.00 0.00 2.87
3213 5157 0.863538 CACATCGGCGTCTTCTCGAG 60.864 60.000 5.93 5.93 36.34 4.04
3222 5166 0.248702 GTCTTCTCGAGGACCATCGC 60.249 60.000 13.56 0.00 42.43 4.58
3238 5182 4.021925 GCGCACCACCCTCTCCTT 62.022 66.667 0.30 0.00 0.00 3.36
3240 5184 1.672356 CGCACCACCCTCTCCTTTG 60.672 63.158 0.00 0.00 0.00 2.77
3275 5219 3.655810 CTCCACTGCTCCGTGCTCC 62.656 68.421 0.00 0.00 43.37 4.70
3289 5233 3.374402 CTCCCCTCGTCGTGCACT 61.374 66.667 16.19 0.00 0.00 4.40
3297 5241 3.649986 GTCGTGCACTGCCACACC 61.650 66.667 16.19 0.00 35.47 4.16
3299 5243 3.208383 CGTGCACTGCCACACCAA 61.208 61.111 16.19 0.00 35.47 3.67
3315 5259 1.550130 CCAAAGGACTCCCCACGCTA 61.550 60.000 0.00 0.00 37.41 4.26
3335 5279 2.358737 CACTTGACGCCACTCCCC 60.359 66.667 0.00 0.00 0.00 4.81
3365 5322 4.309950 GCGTCGAACCCACACCCT 62.310 66.667 0.00 0.00 0.00 4.34
3368 5325 1.666872 GTCGAACCCACACCCTTCG 60.667 63.158 0.00 0.00 38.49 3.79
3385 5342 2.342648 GTCTTTGACGGGCCGAGT 59.657 61.111 35.78 11.88 0.00 4.18
3420 5390 3.775654 ACTGGCCTAGGAGCACGC 61.776 66.667 14.75 0.00 0.00 5.34
3426 5396 2.718731 CTAGGAGCACGCGAGGAG 59.281 66.667 15.93 0.00 0.00 3.69
3430 5400 3.138798 GAGCACGCGAGGAGGGTA 61.139 66.667 15.93 0.00 44.78 3.69
3436 5406 0.683504 ACGCGAGGAGGGTATTGAGT 60.684 55.000 15.93 0.00 44.73 3.41
3437 5407 0.249073 CGCGAGGAGGGTATTGAGTG 60.249 60.000 0.00 0.00 0.00 3.51
3460 5430 4.717313 GGTTGCCCCTCCGGTGTC 62.717 72.222 0.00 0.00 0.00 3.67
3478 5448 3.880846 GCGGGCAAGAGCGGATTG 61.881 66.667 0.00 0.00 43.41 2.67
3479 5449 3.204827 CGGGCAAGAGCGGATTGG 61.205 66.667 0.00 0.00 43.41 3.16
3480 5450 2.830370 GGGCAAGAGCGGATTGGG 60.830 66.667 0.00 0.00 43.41 4.12
3481 5451 2.272146 GGCAAGAGCGGATTGGGA 59.728 61.111 0.00 0.00 43.41 4.37
3482 5452 1.821332 GGCAAGAGCGGATTGGGAG 60.821 63.158 0.00 0.00 43.41 4.30
3483 5453 1.221840 GCAAGAGCGGATTGGGAGA 59.778 57.895 1.67 0.00 0.00 3.71
3484 5454 0.813210 GCAAGAGCGGATTGGGAGAG 60.813 60.000 1.67 0.00 0.00 3.20
3485 5455 0.826715 CAAGAGCGGATTGGGAGAGA 59.173 55.000 0.00 0.00 0.00 3.10
3486 5456 1.118838 AAGAGCGGATTGGGAGAGAG 58.881 55.000 0.00 0.00 0.00 3.20
3487 5457 0.260230 AGAGCGGATTGGGAGAGAGA 59.740 55.000 0.00 0.00 0.00 3.10
3488 5458 1.133199 AGAGCGGATTGGGAGAGAGAT 60.133 52.381 0.00 0.00 0.00 2.75
3489 5459 1.000731 GAGCGGATTGGGAGAGAGATG 59.999 57.143 0.00 0.00 0.00 2.90
3490 5460 0.034616 GCGGATTGGGAGAGAGATGG 59.965 60.000 0.00 0.00 0.00 3.51
3491 5461 0.683973 CGGATTGGGAGAGAGATGGG 59.316 60.000 0.00 0.00 0.00 4.00
3492 5462 1.759201 CGGATTGGGAGAGAGATGGGA 60.759 57.143 0.00 0.00 0.00 4.37
3493 5463 2.412591 GGATTGGGAGAGAGATGGGAA 58.587 52.381 0.00 0.00 0.00 3.97
3494 5464 2.780010 GGATTGGGAGAGAGATGGGAAA 59.220 50.000 0.00 0.00 0.00 3.13
3495 5465 3.181446 GGATTGGGAGAGAGATGGGAAAG 60.181 52.174 0.00 0.00 0.00 2.62
3496 5466 1.885049 TGGGAGAGAGATGGGAAAGG 58.115 55.000 0.00 0.00 0.00 3.11
3497 5467 1.135960 GGGAGAGAGATGGGAAAGGG 58.864 60.000 0.00 0.00 0.00 3.95
3498 5468 1.135960 GGAGAGAGATGGGAAAGGGG 58.864 60.000 0.00 0.00 0.00 4.79
3499 5469 1.626631 GGAGAGAGATGGGAAAGGGGT 60.627 57.143 0.00 0.00 0.00 4.95
3500 5470 2.200955 GAGAGAGATGGGAAAGGGGTT 58.799 52.381 0.00 0.00 0.00 4.11
3501 5471 1.918957 AGAGAGATGGGAAAGGGGTTG 59.081 52.381 0.00 0.00 0.00 3.77
3502 5472 1.916181 GAGAGATGGGAAAGGGGTTGA 59.084 52.381 0.00 0.00 0.00 3.18
3503 5473 2.511637 GAGAGATGGGAAAGGGGTTGAT 59.488 50.000 0.00 0.00 0.00 2.57
3504 5474 2.929043 AGAGATGGGAAAGGGGTTGATT 59.071 45.455 0.00 0.00 0.00 2.57
3505 5475 3.337909 AGAGATGGGAAAGGGGTTGATTT 59.662 43.478 0.00 0.00 0.00 2.17
3506 5476 4.096681 GAGATGGGAAAGGGGTTGATTTT 58.903 43.478 0.00 0.00 0.00 1.82
3507 5477 4.502415 AGATGGGAAAGGGGTTGATTTTT 58.498 39.130 0.00 0.00 0.00 1.94
3508 5478 4.286808 AGATGGGAAAGGGGTTGATTTTTG 59.713 41.667 0.00 0.00 0.00 2.44
3509 5479 3.658725 TGGGAAAGGGGTTGATTTTTGA 58.341 40.909 0.00 0.00 0.00 2.69
3510 5480 3.389656 TGGGAAAGGGGTTGATTTTTGAC 59.610 43.478 0.00 0.00 0.00 3.18
3511 5481 3.244422 GGGAAAGGGGTTGATTTTTGACC 60.244 47.826 0.00 0.00 0.00 4.02
3512 5482 3.389656 GGAAAGGGGTTGATTTTTGACCA 59.610 43.478 0.00 0.00 35.11 4.02
3513 5483 4.503123 GGAAAGGGGTTGATTTTTGACCAG 60.503 45.833 0.00 0.00 35.11 4.00
3514 5484 3.328535 AGGGGTTGATTTTTGACCAGT 57.671 42.857 0.00 0.00 35.11 4.00
3515 5485 3.230976 AGGGGTTGATTTTTGACCAGTC 58.769 45.455 0.00 0.00 35.11 3.51
3516 5486 2.962421 GGGGTTGATTTTTGACCAGTCA 59.038 45.455 0.00 0.00 37.91 3.41
3517 5487 3.386402 GGGGTTGATTTTTGACCAGTCAA 59.614 43.478 9.12 9.12 46.72 3.18
3529 5499 6.546428 TTGACCAGTCAACCCAAATTAAAA 57.454 33.333 9.12 0.00 43.90 1.52
3530 5500 6.739331 TGACCAGTCAACCCAAATTAAAAT 57.261 33.333 0.00 0.00 36.53 1.82
3531 5501 6.754193 TGACCAGTCAACCCAAATTAAAATC 58.246 36.000 0.00 0.00 36.53 2.17
3532 5502 6.325028 TGACCAGTCAACCCAAATTAAAATCA 59.675 34.615 0.00 0.00 36.53 2.57
3533 5503 7.016072 TGACCAGTCAACCCAAATTAAAATCAT 59.984 33.333 0.00 0.00 36.53 2.45
3534 5504 7.160726 ACCAGTCAACCCAAATTAAAATCATG 58.839 34.615 0.00 0.00 0.00 3.07
3535 5505 7.016072 ACCAGTCAACCCAAATTAAAATCATGA 59.984 33.333 0.00 0.00 0.00 3.07
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 43 2.745884 TTGCGGAACCAGCGATGG 60.746 61.111 20.26 20.26 37.44 3.51
53 54 0.109723 AAGCCTAGGTTTGTTGCGGA 59.890 50.000 10.47 0.00 0.00 5.54
55 56 2.393764 CAAAAGCCTAGGTTTGTTGCG 58.606 47.619 12.10 0.00 33.41 4.85
156 157 3.414136 TTCGGTTGGTGCTGGCAGT 62.414 57.895 17.16 0.00 0.00 4.40
158 159 2.410322 ATCTTCGGTTGGTGCTGGCA 62.410 55.000 0.00 0.00 0.00 4.92
201 202 3.643595 ATGGGTGGGATGTGTGCGG 62.644 63.158 0.00 0.00 0.00 5.69
826 1402 8.706936 CCAGTATGATCTTCAGTGAAATATTCG 58.293 37.037 7.06 0.00 39.69 3.34
1192 1779 0.603975 GGGTCTCGCTGCAAGAACTT 60.604 55.000 5.51 0.00 34.07 2.66
1357 2887 5.067023 AGCAGTTTTTGGAAGACTTGAGAAG 59.933 40.000 0.00 0.00 0.00 2.85
1981 3922 8.243426 GTCCAGTGTTGCATAGAATATTTTGAA 58.757 33.333 0.00 0.00 0.00 2.69
1984 3925 7.394359 AGTGTCCAGTGTTGCATAGAATATTTT 59.606 33.333 0.00 0.00 0.00 1.82
2402 4345 6.725364 AGAAAGTCATCCTCCATTGTATTGT 58.275 36.000 0.00 0.00 0.00 2.71
2587 4530 9.706691 ATTTGACCATATATACTACTCCAAACG 57.293 33.333 0.00 0.00 0.00 3.60
2802 4746 3.730761 GAGGTGTTGCAGCAGCGG 61.731 66.667 24.05 0.00 46.23 5.52
2803 4747 3.730761 GGAGGTGTTGCAGCAGCG 61.731 66.667 24.05 0.00 46.23 5.18
2804 4748 2.282040 AGGAGGTGTTGCAGCAGC 60.282 61.111 23.20 23.20 42.57 5.25
2805 4749 0.322277 ATGAGGAGGTGTTGCAGCAG 60.322 55.000 2.40 0.00 33.95 4.24
2806 4750 0.321919 GATGAGGAGGTGTTGCAGCA 60.322 55.000 0.00 0.00 33.95 4.41
2807 4751 0.321919 TGATGAGGAGGTGTTGCAGC 60.322 55.000 0.00 0.00 0.00 5.25
2808 4752 2.014857 CATGATGAGGAGGTGTTGCAG 58.985 52.381 0.00 0.00 0.00 4.41
2809 4753 1.352017 ACATGATGAGGAGGTGTTGCA 59.648 47.619 0.00 0.00 0.00 4.08
2810 4754 2.012673 GACATGATGAGGAGGTGTTGC 58.987 52.381 0.00 0.00 0.00 4.17
2811 4755 2.094026 TCGACATGATGAGGAGGTGTTG 60.094 50.000 0.00 0.00 0.00 3.33
2812 4756 2.179427 TCGACATGATGAGGAGGTGTT 58.821 47.619 0.00 0.00 0.00 3.32
2813 4757 1.852633 TCGACATGATGAGGAGGTGT 58.147 50.000 0.00 0.00 0.00 4.16
2823 4767 3.793797 TCGTTACACCATCGACATGAT 57.206 42.857 0.00 0.00 38.01 2.45
2824 4768 3.579335 TTCGTTACACCATCGACATGA 57.421 42.857 0.00 0.00 33.38 3.07
2825 4769 3.430556 TGTTTCGTTACACCATCGACATG 59.569 43.478 0.00 0.00 33.38 3.21
2826 4770 3.655486 TGTTTCGTTACACCATCGACAT 58.345 40.909 0.00 0.00 33.38 3.06
2827 4771 3.095102 TGTTTCGTTACACCATCGACA 57.905 42.857 0.00 0.00 33.38 4.35
2828 4772 4.240883 GATGTTTCGTTACACCATCGAC 57.759 45.455 0.00 0.00 33.38 4.20
2830 4774 3.283878 CGATGTTTCGTTACACCATCG 57.716 47.619 6.02 6.02 45.76 3.84
2831 4775 3.676172 TGTCGATGTTTCGTTACACCATC 59.324 43.478 0.00 0.00 45.65 3.51
2832 4776 3.430895 GTGTCGATGTTTCGTTACACCAT 59.569 43.478 8.37 0.00 42.62 3.55
2833 4777 2.796031 GTGTCGATGTTTCGTTACACCA 59.204 45.455 8.37 0.00 42.62 4.17
2834 4778 3.429061 GTGTCGATGTTTCGTTACACC 57.571 47.619 8.37 0.00 42.62 4.16
2835 4779 2.156310 GGGTGTCGATGTTTCGTTACAC 59.844 50.000 10.22 10.22 45.30 2.90
2836 4780 2.036217 AGGGTGTCGATGTTTCGTTACA 59.964 45.455 0.00 0.00 45.65 2.41
2837 4781 2.410730 CAGGGTGTCGATGTTTCGTTAC 59.589 50.000 0.00 0.00 45.65 2.50
2838 4782 2.036217 ACAGGGTGTCGATGTTTCGTTA 59.964 45.455 0.00 0.00 45.65 3.18
2839 4783 1.202604 ACAGGGTGTCGATGTTTCGTT 60.203 47.619 0.00 0.00 45.65 3.85
2840 4784 0.391597 ACAGGGTGTCGATGTTTCGT 59.608 50.000 0.00 0.00 45.65 3.85
2841 4785 1.990563 GTACAGGGTGTCGATGTTTCG 59.009 52.381 0.00 0.00 46.87 3.46
2842 4786 2.993899 CTGTACAGGGTGTCGATGTTTC 59.006 50.000 15.49 0.00 0.00 2.78
2843 4787 2.870435 GCTGTACAGGGTGTCGATGTTT 60.870 50.000 23.95 0.00 0.00 2.83
2844 4788 1.337823 GCTGTACAGGGTGTCGATGTT 60.338 52.381 23.95 0.00 0.00 2.71
2845 4789 0.246635 GCTGTACAGGGTGTCGATGT 59.753 55.000 23.95 0.00 0.00 3.06
2846 4790 0.460284 GGCTGTACAGGGTGTCGATG 60.460 60.000 23.95 0.00 0.00 3.84
2847 4791 1.898154 GGCTGTACAGGGTGTCGAT 59.102 57.895 23.95 0.00 0.00 3.59
2848 4792 2.632544 CGGCTGTACAGGGTGTCGA 61.633 63.158 23.95 0.00 0.00 4.20
2849 4793 2.126071 CGGCTGTACAGGGTGTCG 60.126 66.667 23.95 8.71 0.00 4.35
2850 4794 1.215647 CTCGGCTGTACAGGGTGTC 59.784 63.158 23.95 6.93 0.00 3.67
2851 4795 2.283529 CCTCGGCTGTACAGGGTGT 61.284 63.158 23.95 0.00 0.00 4.16
2852 4796 1.541310 TTCCTCGGCTGTACAGGGTG 61.541 60.000 23.95 0.00 0.00 4.61
2853 4797 1.229082 TTCCTCGGCTGTACAGGGT 60.229 57.895 23.95 0.00 0.00 4.34
2854 4798 1.218316 GTTCCTCGGCTGTACAGGG 59.782 63.158 23.95 16.02 0.00 4.45
2855 4799 1.218316 GGTTCCTCGGCTGTACAGG 59.782 63.158 23.95 8.35 0.00 4.00
2856 4800 0.389948 GTGGTTCCTCGGCTGTACAG 60.390 60.000 18.93 18.93 0.00 2.74
2857 4801 1.116536 TGTGGTTCCTCGGCTGTACA 61.117 55.000 0.00 0.00 0.00 2.90
2858 4802 0.249398 ATGTGGTTCCTCGGCTGTAC 59.751 55.000 0.00 0.00 0.00 2.90
2859 4803 0.981183 AATGTGGTTCCTCGGCTGTA 59.019 50.000 0.00 0.00 0.00 2.74
2860 4804 0.321653 GAATGTGGTTCCTCGGCTGT 60.322 55.000 0.00 0.00 0.00 4.40
2861 4805 2.471255 GAATGTGGTTCCTCGGCTG 58.529 57.895 0.00 0.00 0.00 4.85
2869 4813 2.025887 AGGTGGAGATGGAATGTGGTTC 60.026 50.000 0.00 0.00 36.04 3.62
2870 4814 1.995542 AGGTGGAGATGGAATGTGGTT 59.004 47.619 0.00 0.00 0.00 3.67
2871 4815 1.561542 GAGGTGGAGATGGAATGTGGT 59.438 52.381 0.00 0.00 0.00 4.16
2872 4816 1.842562 AGAGGTGGAGATGGAATGTGG 59.157 52.381 0.00 0.00 0.00 4.17
2873 4817 3.276857 CAAGAGGTGGAGATGGAATGTG 58.723 50.000 0.00 0.00 0.00 3.21
2874 4818 2.356535 GCAAGAGGTGGAGATGGAATGT 60.357 50.000 0.00 0.00 0.00 2.71
2875 4819 2.295885 GCAAGAGGTGGAGATGGAATG 58.704 52.381 0.00 0.00 0.00 2.67
2876 4820 1.134280 CGCAAGAGGTGGAGATGGAAT 60.134 52.381 0.00 0.00 43.02 3.01
2877 4821 0.250234 CGCAAGAGGTGGAGATGGAA 59.750 55.000 0.00 0.00 43.02 3.53
2878 4822 1.900351 CGCAAGAGGTGGAGATGGA 59.100 57.895 0.00 0.00 43.02 3.41
2879 4823 1.817099 GCGCAAGAGGTGGAGATGG 60.817 63.158 0.30 0.00 43.02 3.51
2880 4824 2.169789 CGCGCAAGAGGTGGAGATG 61.170 63.158 8.75 0.00 43.02 2.90
2881 4825 1.680522 ATCGCGCAAGAGGTGGAGAT 61.681 55.000 8.75 0.00 43.02 2.75
2882 4826 2.284798 GATCGCGCAAGAGGTGGAGA 62.285 60.000 8.75 0.00 43.02 3.71
2883 4827 1.880340 GATCGCGCAAGAGGTGGAG 60.880 63.158 8.75 0.00 43.02 3.86
2884 4828 2.184322 GATCGCGCAAGAGGTGGA 59.816 61.111 8.75 0.00 43.02 4.02
2885 4829 3.257561 CGATCGCGCAAGAGGTGG 61.258 66.667 8.75 0.00 43.02 4.61
2886 4830 2.202610 TCGATCGCGCAAGAGGTG 60.203 61.111 11.09 0.00 43.02 4.00
2887 4831 1.729470 ATCTCGATCGCGCAAGAGGT 61.729 55.000 11.09 12.63 43.02 3.85
2888 4832 1.001240 GATCTCGATCGCGCAAGAGG 61.001 60.000 11.09 0.00 43.02 3.69
2889 4833 0.040514 AGATCTCGATCGCGCAAGAG 60.041 55.000 11.09 15.13 42.48 2.85
2890 4834 1.195674 CTAGATCTCGATCGCGCAAGA 59.804 52.381 11.09 8.54 42.48 3.02
2891 4835 1.601091 CTAGATCTCGATCGCGCAAG 58.399 55.000 11.09 2.33 42.48 4.01
2892 4836 0.386100 GCTAGATCTCGATCGCGCAA 60.386 55.000 11.09 0.00 42.48 4.85
2893 4837 1.207848 GCTAGATCTCGATCGCGCA 59.792 57.895 11.09 0.00 42.48 6.09
2894 4838 0.792729 CTGCTAGATCTCGATCGCGC 60.793 60.000 11.09 0.00 42.48 6.86
2895 4839 0.515127 ACTGCTAGATCTCGATCGCG 59.485 55.000 11.09 3.99 42.48 5.87
2896 4840 2.159626 GGTACTGCTAGATCTCGATCGC 60.160 54.545 11.09 0.00 42.48 4.58
2897 4841 3.067833 TGGTACTGCTAGATCTCGATCG 58.932 50.000 9.36 9.36 42.48 3.69
2898 4842 4.678509 CTGGTACTGCTAGATCTCGATC 57.321 50.000 0.00 0.00 38.09 3.69
2919 4863 1.449353 CTGGTGATGGAGCCTAGGC 59.551 63.158 27.19 27.19 42.33 3.93
2920 4864 1.340399 TGCTGGTGATGGAGCCTAGG 61.340 60.000 3.67 3.67 34.04 3.02
2921 4865 0.179062 GTGCTGGTGATGGAGCCTAG 60.179 60.000 0.00 0.00 34.04 3.02
2922 4866 1.907739 GTGCTGGTGATGGAGCCTA 59.092 57.895 0.00 0.00 34.04 3.93
2923 4867 2.673523 GTGCTGGTGATGGAGCCT 59.326 61.111 0.00 0.00 34.04 4.58
2924 4868 2.821366 CGTGCTGGTGATGGAGCC 60.821 66.667 0.00 0.00 34.04 4.70
2925 4869 3.503363 GCGTGCTGGTGATGGAGC 61.503 66.667 0.00 0.00 35.65 4.70
2926 4870 2.821366 GGCGTGCTGGTGATGGAG 60.821 66.667 0.00 0.00 0.00 3.86
2927 4871 3.189376 TTGGCGTGCTGGTGATGGA 62.189 57.895 0.00 0.00 0.00 3.41
2928 4872 2.672651 TTGGCGTGCTGGTGATGG 60.673 61.111 0.00 0.00 0.00 3.51
2929 4873 2.693762 CCTTGGCGTGCTGGTGATG 61.694 63.158 0.00 0.00 0.00 3.07
2930 4874 2.360350 CCTTGGCGTGCTGGTGAT 60.360 61.111 0.00 0.00 0.00 3.06
2941 4885 4.547367 AGTATCGGCGGCCTTGGC 62.547 66.667 18.34 2.49 0.00 4.52
2942 4886 2.588877 CAGTATCGGCGGCCTTGG 60.589 66.667 18.34 1.23 0.00 3.61
2943 4887 2.587322 TTCCAGTATCGGCGGCCTTG 62.587 60.000 18.34 2.05 0.00 3.61
2944 4888 2.311688 CTTCCAGTATCGGCGGCCTT 62.312 60.000 18.34 7.02 0.00 4.35
2945 4889 2.762459 TTCCAGTATCGGCGGCCT 60.762 61.111 18.34 1.06 0.00 5.19
2946 4890 2.280186 CTTCCAGTATCGGCGGCC 60.280 66.667 9.54 9.54 0.00 6.13
2947 4891 2.967615 GCTTCCAGTATCGGCGGC 60.968 66.667 7.21 0.00 0.00 6.53
2948 4892 0.946221 GATGCTTCCAGTATCGGCGG 60.946 60.000 7.21 0.00 28.12 6.13
2949 4893 0.249447 TGATGCTTCCAGTATCGGCG 60.249 55.000 0.00 0.00 39.74 6.46
2950 4894 1.221414 GTGATGCTTCCAGTATCGGC 58.779 55.000 0.00 0.00 39.74 5.54
2951 4895 1.414181 AGGTGATGCTTCCAGTATCGG 59.586 52.381 0.00 0.00 39.74 4.18
2952 4896 2.101415 TCAGGTGATGCTTCCAGTATCG 59.899 50.000 0.00 0.00 39.74 2.92
2953 4897 3.827008 TCAGGTGATGCTTCCAGTATC 57.173 47.619 0.00 0.00 37.76 2.24
2954 4898 3.713248 TGATCAGGTGATGCTTCCAGTAT 59.287 43.478 0.00 0.00 34.37 2.12
2955 4899 3.106827 TGATCAGGTGATGCTTCCAGTA 58.893 45.455 0.00 0.00 34.37 2.74
2956 4900 1.911357 TGATCAGGTGATGCTTCCAGT 59.089 47.619 0.00 0.00 34.37 4.00
2957 4901 2.286872 GTGATCAGGTGATGCTTCCAG 58.713 52.381 0.00 0.00 34.37 3.86
2958 4902 1.629861 TGTGATCAGGTGATGCTTCCA 59.370 47.619 0.00 0.00 34.37 3.53
2959 4903 2.012673 GTGTGATCAGGTGATGCTTCC 58.987 52.381 0.00 0.00 34.37 3.46
2960 4904 2.012673 GGTGTGATCAGGTGATGCTTC 58.987 52.381 0.00 0.00 34.37 3.86
2961 4905 1.352017 TGGTGTGATCAGGTGATGCTT 59.648 47.619 0.00 0.00 34.37 3.91
2962 4906 0.986527 TGGTGTGATCAGGTGATGCT 59.013 50.000 0.00 0.00 34.37 3.79
2963 4907 1.089920 GTGGTGTGATCAGGTGATGC 58.910 55.000 0.00 0.00 34.37 3.91
2964 4908 2.625737 GAGTGGTGTGATCAGGTGATG 58.374 52.381 0.00 0.00 34.37 3.07
2965 4909 1.556911 GGAGTGGTGTGATCAGGTGAT 59.443 52.381 0.00 0.00 37.51 3.06
2966 4910 0.976641 GGAGTGGTGTGATCAGGTGA 59.023 55.000 0.00 0.00 0.00 4.02
2967 4911 0.390340 CGGAGTGGTGTGATCAGGTG 60.390 60.000 0.00 0.00 0.00 4.00
2968 4912 0.541998 TCGGAGTGGTGTGATCAGGT 60.542 55.000 0.00 0.00 0.00 4.00
2969 4913 0.174389 CTCGGAGTGGTGTGATCAGG 59.826 60.000 0.00 0.00 0.00 3.86
2970 4914 0.459237 GCTCGGAGTGGTGTGATCAG 60.459 60.000 6.90 0.00 0.00 2.90
2971 4915 1.591703 GCTCGGAGTGGTGTGATCA 59.408 57.895 6.90 0.00 0.00 2.92
2972 4916 1.517257 CGCTCGGAGTGGTGTGATC 60.517 63.158 10.71 0.00 0.00 2.92
2973 4917 2.573869 CGCTCGGAGTGGTGTGAT 59.426 61.111 10.71 0.00 0.00 3.06
2974 4918 3.680786 CCGCTCGGAGTGGTGTGA 61.681 66.667 25.93 0.00 40.92 3.58
2975 4919 4.742201 CCCGCTCGGAGTGGTGTG 62.742 72.222 30.09 15.42 44.26 3.82
2991 4935 2.764128 TCGATCTGGGTCCCTGCC 60.764 66.667 10.00 3.45 0.00 4.85
2992 4936 2.501610 GTCGATCTGGGTCCCTGC 59.498 66.667 10.00 0.00 0.00 4.85
2993 4937 2.435693 GGGTCGATCTGGGTCCCTG 61.436 68.421 10.00 9.21 35.63 4.45
2994 4938 2.041819 GGGTCGATCTGGGTCCCT 60.042 66.667 10.00 0.00 35.63 4.20
2995 4939 3.162154 GGGGTCGATCTGGGTCCC 61.162 72.222 0.00 0.00 37.59 4.46
2996 4940 3.537874 CGGGGTCGATCTGGGTCC 61.538 72.222 0.00 0.00 39.00 4.46
2997 4941 3.537874 CCGGGGTCGATCTGGGTC 61.538 72.222 0.00 0.00 39.00 4.46
2998 4942 3.390671 ATCCGGGGTCGATCTGGGT 62.391 63.158 0.00 6.64 39.00 4.51
2999 4943 2.524394 ATCCGGGGTCGATCTGGG 60.524 66.667 0.00 7.74 39.00 4.45
3000 4944 2.737180 CATCCGGGGTCGATCTGG 59.263 66.667 0.00 9.54 39.00 3.86
3001 4945 1.188219 ATCCATCCGGGGTCGATCTG 61.188 60.000 0.00 0.00 39.00 2.90
3002 4946 0.900647 GATCCATCCGGGGTCGATCT 60.901 60.000 7.56 0.00 36.96 2.75
3003 4947 1.592223 GATCCATCCGGGGTCGATC 59.408 63.158 0.00 0.00 36.96 3.69
3004 4948 3.793060 GATCCATCCGGGGTCGAT 58.207 61.111 0.00 0.00 36.96 3.59
3017 4961 2.019984 GTGCTGATTGGAGTTGGATCC 58.980 52.381 4.20 4.20 40.03 3.36
3018 4962 2.019984 GGTGCTGATTGGAGTTGGATC 58.980 52.381 0.00 0.00 0.00 3.36
3019 4963 1.679944 CGGTGCTGATTGGAGTTGGAT 60.680 52.381 0.00 0.00 0.00 3.41
3020 4964 0.321564 CGGTGCTGATTGGAGTTGGA 60.322 55.000 0.00 0.00 0.00 3.53
3021 4965 1.926511 GCGGTGCTGATTGGAGTTGG 61.927 60.000 0.00 0.00 0.00 3.77
3022 4966 1.503542 GCGGTGCTGATTGGAGTTG 59.496 57.895 0.00 0.00 0.00 3.16
3023 4967 1.675641 GGCGGTGCTGATTGGAGTT 60.676 57.895 0.00 0.00 0.00 3.01
3024 4968 2.045926 GGCGGTGCTGATTGGAGT 60.046 61.111 0.00 0.00 0.00 3.85
3025 4969 3.197790 CGGCGGTGCTGATTGGAG 61.198 66.667 0.00 0.00 37.02 3.86
3035 4979 4.481112 GAATTGCTGGCGGCGGTG 62.481 66.667 20.06 5.87 45.43 4.94
3040 4984 4.794648 TCCGGGAATTGCTGGCGG 62.795 66.667 19.55 12.78 0.00 6.13
3041 4985 3.508840 GTCCGGGAATTGCTGGCG 61.509 66.667 19.55 3.58 0.00 5.69
3042 4986 3.140814 GGTCCGGGAATTGCTGGC 61.141 66.667 19.55 13.99 0.00 4.85
3043 4987 2.246761 TACGGTCCGGGAATTGCTGG 62.247 60.000 18.38 18.38 0.00 4.85
3044 4988 0.810031 CTACGGTCCGGGAATTGCTG 60.810 60.000 17.28 0.00 0.00 4.41
3045 4989 1.520666 CTACGGTCCGGGAATTGCT 59.479 57.895 17.28 0.00 0.00 3.91
3046 4990 2.178235 GCTACGGTCCGGGAATTGC 61.178 63.158 17.28 3.19 0.00 3.56
3047 4991 1.523032 GGCTACGGTCCGGGAATTG 60.523 63.158 17.28 0.00 0.00 2.32
3048 4992 1.683418 GAGGCTACGGTCCGGGAATT 61.683 60.000 17.28 0.00 0.00 2.17
3049 4993 2.042230 AGGCTACGGTCCGGGAAT 60.042 61.111 17.28 0.00 0.00 3.01
3050 4994 2.757099 GAGGCTACGGTCCGGGAA 60.757 66.667 17.28 0.00 0.00 3.97
3051 4995 4.828296 GGAGGCTACGGTCCGGGA 62.828 72.222 17.28 1.74 0.00 5.14
3075 5019 4.695231 AACGTGTCGTCGGAGCGG 62.695 66.667 0.00 0.00 39.99 5.52
3076 5020 3.164011 GAACGTGTCGTCGGAGCG 61.164 66.667 0.00 0.00 39.99 5.03
3077 5021 2.050714 TGAACGTGTCGTCGGAGC 60.051 61.111 0.00 0.00 39.99 4.70
3078 5022 1.728426 GGTGAACGTGTCGTCGGAG 60.728 63.158 0.00 0.00 39.99 4.63
3079 5023 2.002509 TTGGTGAACGTGTCGTCGGA 62.003 55.000 0.00 0.00 39.99 4.55
3080 5024 0.942410 ATTGGTGAACGTGTCGTCGG 60.942 55.000 0.00 0.00 39.99 4.79
3081 5025 0.160813 CATTGGTGAACGTGTCGTCG 59.839 55.000 0.00 0.00 39.99 5.12
3082 5026 0.511221 CCATTGGTGAACGTGTCGTC 59.489 55.000 0.00 0.00 39.99 4.20
3083 5027 0.105224 TCCATTGGTGAACGTGTCGT 59.895 50.000 1.86 0.00 43.97 4.34
3084 5028 0.511221 GTCCATTGGTGAACGTGTCG 59.489 55.000 1.86 0.00 0.00 4.35
3085 5029 0.872388 GGTCCATTGGTGAACGTGTC 59.128 55.000 1.86 0.00 0.00 3.67
3086 5030 0.882927 CGGTCCATTGGTGAACGTGT 60.883 55.000 1.86 0.00 38.11 4.49
3087 5031 1.866237 CGGTCCATTGGTGAACGTG 59.134 57.895 1.86 0.00 38.11 4.49
3088 5032 1.964373 GCGGTCCATTGGTGAACGT 60.964 57.895 1.86 0.00 44.54 3.99
3089 5033 1.305219 ATGCGGTCCATTGGTGAACG 61.305 55.000 1.86 0.00 45.46 3.95
3090 5034 1.745232 TATGCGGTCCATTGGTGAAC 58.255 50.000 1.86 0.00 35.34 3.18
3091 5035 2.088423 GTTATGCGGTCCATTGGTGAA 58.912 47.619 1.86 0.00 35.34 3.18
3092 5036 1.003696 TGTTATGCGGTCCATTGGTGA 59.996 47.619 1.86 0.00 35.34 4.02
3093 5037 1.401552 CTGTTATGCGGTCCATTGGTG 59.598 52.381 1.86 0.00 35.34 4.17
3094 5038 1.750193 CTGTTATGCGGTCCATTGGT 58.250 50.000 1.86 0.00 35.34 3.67
3095 5039 0.381801 GCTGTTATGCGGTCCATTGG 59.618 55.000 0.00 0.00 35.34 3.16
3096 5040 0.381801 GGCTGTTATGCGGTCCATTG 59.618 55.000 0.00 0.00 35.34 2.82
3097 5041 0.034574 TGGCTGTTATGCGGTCCATT 60.035 50.000 0.00 0.00 35.34 3.16
3098 5042 0.464373 CTGGCTGTTATGCGGTCCAT 60.464 55.000 0.00 0.00 37.97 3.41
3099 5043 1.078497 CTGGCTGTTATGCGGTCCA 60.078 57.895 0.00 0.00 0.00 4.02
3100 5044 1.078426 ACTGGCTGTTATGCGGTCC 60.078 57.895 0.00 0.00 0.00 4.46
3101 5045 1.982073 GCACTGGCTGTTATGCGGTC 61.982 60.000 0.00 0.00 36.96 4.79
3102 5046 2.040544 GCACTGGCTGTTATGCGGT 61.041 57.895 0.00 0.00 36.96 5.68
3103 5047 2.764314 GGCACTGGCTGTTATGCGG 61.764 63.158 0.00 0.00 39.02 5.69
3104 5048 2.764314 GGGCACTGGCTGTTATGCG 61.764 63.158 2.14 0.00 39.02 4.73
3105 5049 2.418083 GGGGCACTGGCTGTTATGC 61.418 63.158 2.14 0.00 40.87 3.14
3106 5050 2.114670 CGGGGCACTGGCTGTTATG 61.115 63.158 2.14 0.00 40.87 1.90
3107 5051 2.272146 CGGGGCACTGGCTGTTAT 59.728 61.111 2.14 0.00 40.87 1.89
3108 5052 3.246112 ACGGGGCACTGGCTGTTA 61.246 61.111 0.00 0.00 40.87 2.41
3109 5053 4.643387 GACGGGGCACTGGCTGTT 62.643 66.667 0.00 0.00 40.87 3.16
3131 5075 0.388649 ACTAGGTGACTTTGCGCGAG 60.389 55.000 12.10 5.92 43.67 5.03
3132 5076 0.388134 GACTAGGTGACTTTGCGCGA 60.388 55.000 12.10 0.00 43.67 5.87
3133 5077 1.674611 CGACTAGGTGACTTTGCGCG 61.675 60.000 0.00 0.00 43.67 6.86
3134 5078 0.388134 TCGACTAGGTGACTTTGCGC 60.388 55.000 0.00 0.00 43.67 6.09
3135 5079 1.719780 GTTCGACTAGGTGACTTTGCG 59.280 52.381 0.00 0.00 43.67 4.85
3136 5080 1.719780 CGTTCGACTAGGTGACTTTGC 59.280 52.381 0.00 0.00 43.67 3.68
3137 5081 1.719780 GCGTTCGACTAGGTGACTTTG 59.280 52.381 0.00 0.00 43.67 2.77
3138 5082 1.336609 GGCGTTCGACTAGGTGACTTT 60.337 52.381 0.00 0.00 43.67 2.66
3139 5083 0.243095 GGCGTTCGACTAGGTGACTT 59.757 55.000 0.00 0.00 43.67 3.01
3140 5084 1.919956 CGGCGTTCGACTAGGTGACT 61.920 60.000 0.00 0.00 43.05 3.41
3141 5085 1.513586 CGGCGTTCGACTAGGTGAC 60.514 63.158 0.00 0.00 42.43 3.67
3142 5086 2.872557 CGGCGTTCGACTAGGTGA 59.127 61.111 0.00 0.00 42.43 4.02
3143 5087 1.985447 TAGCGGCGTTCGACTAGGTG 61.985 60.000 9.37 0.00 42.43 4.00
3144 5088 1.746615 TAGCGGCGTTCGACTAGGT 60.747 57.895 9.37 0.00 42.43 3.08
3145 5089 1.298190 GTAGCGGCGTTCGACTAGG 60.298 63.158 9.37 0.00 42.43 3.02
3146 5090 1.298190 GGTAGCGGCGTTCGACTAG 60.298 63.158 9.37 0.00 42.43 2.57
3147 5091 2.764314 GGGTAGCGGCGTTCGACTA 61.764 63.158 9.37 0.00 42.43 2.59
3148 5092 4.125695 GGGTAGCGGCGTTCGACT 62.126 66.667 9.37 0.00 42.43 4.18
3151 5095 4.867599 GAGGGGTAGCGGCGTTCG 62.868 72.222 9.37 0.00 42.76 3.95
3152 5096 3.459063 AGAGGGGTAGCGGCGTTC 61.459 66.667 9.37 0.00 0.00 3.95
3153 5097 3.771160 CAGAGGGGTAGCGGCGTT 61.771 66.667 9.37 4.68 0.00 4.84
3156 5100 2.441822 CTATGCAGAGGGGTAGCGGC 62.442 65.000 0.00 0.00 0.00 6.53
3157 5101 1.668294 CTATGCAGAGGGGTAGCGG 59.332 63.158 0.00 0.00 0.00 5.52
3158 5102 1.005630 GCTATGCAGAGGGGTAGCG 60.006 63.158 10.92 0.00 31.39 4.26
3159 5103 1.373059 GGCTATGCAGAGGGGTAGC 59.627 63.158 10.92 8.31 38.98 3.58
3160 5104 0.764369 TGGGCTATGCAGAGGGGTAG 60.764 60.000 10.92 0.00 0.00 3.18
3161 5105 0.327095 TTGGGCTATGCAGAGGGGTA 60.327 55.000 10.92 0.00 0.00 3.69
3162 5106 1.619363 TTGGGCTATGCAGAGGGGT 60.619 57.895 10.92 0.00 0.00 4.95
3163 5107 1.152881 GTTGGGCTATGCAGAGGGG 60.153 63.158 10.92 0.00 0.00 4.79
3164 5108 1.152881 GGTTGGGCTATGCAGAGGG 60.153 63.158 10.92 0.00 0.00 4.30
3165 5109 0.184451 ATGGTTGGGCTATGCAGAGG 59.816 55.000 10.92 0.00 0.00 3.69
3166 5110 1.315690 CATGGTTGGGCTATGCAGAG 58.684 55.000 3.34 3.34 0.00 3.35
3167 5111 0.625316 ACATGGTTGGGCTATGCAGA 59.375 50.000 0.00 0.00 39.36 4.26
3168 5112 1.027357 GACATGGTTGGGCTATGCAG 58.973 55.000 0.00 0.00 39.36 4.41
3169 5113 0.747644 CGACATGGTTGGGCTATGCA 60.748 55.000 0.00 0.00 39.36 3.96
3170 5114 2.024918 CGACATGGTTGGGCTATGC 58.975 57.895 0.00 0.00 39.36 3.14
3171 5115 1.447317 GGCGACATGGTTGGGCTATG 61.447 60.000 0.00 0.00 41.23 2.23
3172 5116 1.152963 GGCGACATGGTTGGGCTAT 60.153 57.895 0.00 0.00 0.00 2.97
3173 5117 2.252072 GAGGCGACATGGTTGGGCTA 62.252 60.000 0.00 0.00 35.23 3.93
3174 5118 3.628646 GAGGCGACATGGTTGGGCT 62.629 63.158 0.00 0.18 38.07 5.19
3175 5119 3.134127 GAGGCGACATGGTTGGGC 61.134 66.667 0.00 0.00 0.00 5.36
3176 5120 2.438434 GGAGGCGACATGGTTGGG 60.438 66.667 0.00 0.00 0.00 4.12
3177 5121 2.438434 GGGAGGCGACATGGTTGG 60.438 66.667 0.00 0.00 0.00 3.77
3178 5122 2.040544 GTGGGAGGCGACATGGTTG 61.041 63.158 0.00 0.00 0.00 3.77
3179 5123 1.852157 ATGTGGGAGGCGACATGGTT 61.852 55.000 0.00 0.00 31.47 3.67
3180 5124 2.257409 GATGTGGGAGGCGACATGGT 62.257 60.000 0.00 0.00 32.85 3.55
3181 5125 1.524621 GATGTGGGAGGCGACATGG 60.525 63.158 0.00 0.00 32.85 3.66
3182 5126 1.884464 CGATGTGGGAGGCGACATG 60.884 63.158 0.00 0.00 32.85 3.21
3183 5127 2.501128 CGATGTGGGAGGCGACAT 59.499 61.111 0.00 0.00 35.46 3.06
3184 5128 3.770040 CCGATGTGGGAGGCGACA 61.770 66.667 0.00 0.00 0.00 4.35
3193 5137 1.874019 CGAGAAGACGCCGATGTGG 60.874 63.158 0.00 0.00 42.50 4.17
3222 5166 1.672356 CAAAGGAGAGGGTGGTGCG 60.672 63.158 0.00 0.00 0.00 5.34
3238 5182 1.213678 AGCATGATTGGGAGCTAGCAA 59.786 47.619 18.83 2.12 35.19 3.91
3240 5184 1.521580 GAGCATGATTGGGAGCTAGC 58.478 55.000 6.62 6.62 37.48 3.42
3278 5222 4.214327 TGTGGCAGTGCACGACGA 62.214 61.111 18.61 1.65 0.00 4.20
3289 5233 1.150536 GGAGTCCTTTGGTGTGGCA 59.849 57.895 0.41 0.00 0.00 4.92
3297 5241 0.391263 GTAGCGTGGGGAGTCCTTTG 60.391 60.000 9.58 0.00 36.20 2.77
3299 5243 1.988406 GGTAGCGTGGGGAGTCCTT 60.988 63.158 9.58 0.00 36.20 3.36
3315 5259 2.426023 GAGTGGCGTCAAGTGGGT 59.574 61.111 0.00 0.00 0.00 4.51
3368 5325 2.027625 CACTCGGCCCGTCAAAGAC 61.028 63.158 1.63 0.00 0.00 3.01
3403 5373 3.775654 GCGTGCTCCTAGGCCAGT 61.776 66.667 5.01 0.00 0.00 4.00
3407 5377 4.577246 CCTCGCGTGCTCCTAGGC 62.577 72.222 5.77 0.00 0.00 3.93
3420 5390 0.105039 GCCACTCAATACCCTCCTCG 59.895 60.000 0.00 0.00 0.00 4.63
3426 5396 1.508256 ACCCTAGCCACTCAATACCC 58.492 55.000 0.00 0.00 0.00 3.69
3430 5400 3.577389 GCAACCCTAGCCACTCAAT 57.423 52.632 0.00 0.00 0.00 2.57
3461 5431 3.880846 CAATCCGCTCTTGCCCGC 61.881 66.667 0.00 0.00 35.36 6.13
3462 5432 3.204827 CCAATCCGCTCTTGCCCG 61.205 66.667 0.00 0.00 35.36 6.13
3463 5433 2.830370 CCCAATCCGCTCTTGCCC 60.830 66.667 0.00 0.00 35.36 5.36
3464 5434 1.821332 CTCCCAATCCGCTCTTGCC 60.821 63.158 0.00 0.00 35.36 4.52
3465 5435 0.813210 CTCTCCCAATCCGCTCTTGC 60.813 60.000 0.00 0.00 0.00 4.01
3466 5436 0.826715 TCTCTCCCAATCCGCTCTTG 59.173 55.000 0.00 0.00 0.00 3.02
3467 5437 1.118838 CTCTCTCCCAATCCGCTCTT 58.881 55.000 0.00 0.00 0.00 2.85
3468 5438 0.260230 TCTCTCTCCCAATCCGCTCT 59.740 55.000 0.00 0.00 0.00 4.09
3469 5439 1.000731 CATCTCTCTCCCAATCCGCTC 59.999 57.143 0.00 0.00 0.00 5.03
3470 5440 1.047002 CATCTCTCTCCCAATCCGCT 58.953 55.000 0.00 0.00 0.00 5.52
3471 5441 0.034616 CCATCTCTCTCCCAATCCGC 59.965 60.000 0.00 0.00 0.00 5.54
3472 5442 0.683973 CCCATCTCTCTCCCAATCCG 59.316 60.000 0.00 0.00 0.00 4.18
3473 5443 2.109229 TCCCATCTCTCTCCCAATCC 57.891 55.000 0.00 0.00 0.00 3.01
3474 5444 3.181446 CCTTTCCCATCTCTCTCCCAATC 60.181 52.174 0.00 0.00 0.00 2.67
3475 5445 2.782341 CCTTTCCCATCTCTCTCCCAAT 59.218 50.000 0.00 0.00 0.00 3.16
3476 5446 2.200081 CCTTTCCCATCTCTCTCCCAA 58.800 52.381 0.00 0.00 0.00 4.12
3477 5447 1.626350 CCCTTTCCCATCTCTCTCCCA 60.626 57.143 0.00 0.00 0.00 4.37
3478 5448 1.135960 CCCTTTCCCATCTCTCTCCC 58.864 60.000 0.00 0.00 0.00 4.30
3479 5449 1.135960 CCCCTTTCCCATCTCTCTCC 58.864 60.000 0.00 0.00 0.00 3.71
3480 5450 1.886422 ACCCCTTTCCCATCTCTCTC 58.114 55.000 0.00 0.00 0.00 3.20
3481 5451 1.918957 CAACCCCTTTCCCATCTCTCT 59.081 52.381 0.00 0.00 0.00 3.10
3482 5452 1.916181 TCAACCCCTTTCCCATCTCTC 59.084 52.381 0.00 0.00 0.00 3.20
3483 5453 2.059756 TCAACCCCTTTCCCATCTCT 57.940 50.000 0.00 0.00 0.00 3.10
3484 5454 3.388552 AATCAACCCCTTTCCCATCTC 57.611 47.619 0.00 0.00 0.00 2.75
3485 5455 3.852858 AAATCAACCCCTTTCCCATCT 57.147 42.857 0.00 0.00 0.00 2.90
3486 5456 4.285775 TCAAAAATCAACCCCTTTCCCATC 59.714 41.667 0.00 0.00 0.00 3.51
3487 5457 4.041567 GTCAAAAATCAACCCCTTTCCCAT 59.958 41.667 0.00 0.00 0.00 4.00
3488 5458 3.389656 GTCAAAAATCAACCCCTTTCCCA 59.610 43.478 0.00 0.00 0.00 4.37
3489 5459 3.244422 GGTCAAAAATCAACCCCTTTCCC 60.244 47.826 0.00 0.00 0.00 3.97
3490 5460 3.389656 TGGTCAAAAATCAACCCCTTTCC 59.610 43.478 0.00 0.00 31.78 3.13
3491 5461 4.100963 ACTGGTCAAAAATCAACCCCTTTC 59.899 41.667 0.00 0.00 31.78 2.62
3492 5462 4.037222 ACTGGTCAAAAATCAACCCCTTT 58.963 39.130 0.00 0.00 31.78 3.11
3493 5463 3.641436 GACTGGTCAAAAATCAACCCCTT 59.359 43.478 0.00 0.00 31.78 3.95
3494 5464 3.230976 GACTGGTCAAAAATCAACCCCT 58.769 45.455 0.00 0.00 31.78 4.79
3495 5465 2.962421 TGACTGGTCAAAAATCAACCCC 59.038 45.455 0.51 0.00 36.53 4.95
3496 5466 4.664150 TTGACTGGTCAAAAATCAACCC 57.336 40.909 12.94 0.00 45.56 4.11
3506 5476 6.546428 TTTTAATTTGGGTTGACTGGTCAA 57.454 33.333 11.53 11.53 46.27 3.18
3507 5477 6.325028 TGATTTTAATTTGGGTTGACTGGTCA 59.675 34.615 0.00 0.00 37.91 4.02
3508 5478 6.754193 TGATTTTAATTTGGGTTGACTGGTC 58.246 36.000 0.00 0.00 0.00 4.02
3509 5479 6.739331 TGATTTTAATTTGGGTTGACTGGT 57.261 33.333 0.00 0.00 0.00 4.00
3510 5480 7.385267 TCATGATTTTAATTTGGGTTGACTGG 58.615 34.615 0.00 0.00 0.00 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.