Multiple sequence alignment - TraesCS6B01G023500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G023500 chr6B 100.000 2540 0 0 1 2540 14400250 14397711 0.000000e+00 4691
1 TraesCS6B01G023500 chr6B 86.780 1407 157 13 359 1745 13934114 13932717 0.000000e+00 1541
2 TraesCS6B01G023500 chr6B 86.525 1410 149 27 359 1743 14311093 14312486 0.000000e+00 1513
3 TraesCS6B01G023500 chr6B 85.316 1219 147 18 355 1548 54422302 54421091 0.000000e+00 1230
4 TraesCS6B01G023500 chr6B 84.347 1233 160 24 359 1568 14455061 14453839 0.000000e+00 1177
5 TraesCS6B01G023500 chr6B 83.225 1234 174 20 359 1567 39311043 39312268 0.000000e+00 1101
6 TraesCS6B01G023500 chr6B 76.433 1256 245 36 501 1725 27065859 27064624 1.280000e-177 632
7 TraesCS6B01G023500 chr6B 84.242 495 62 11 1744 2225 13932626 13932135 3.830000e-128 468
8 TraesCS6B01G023500 chr6B 83.434 495 68 10 1744 2225 14312579 14313072 4.980000e-122 448
9 TraesCS6B01G023500 chr6A 94.357 1914 89 10 327 2225 8170417 8172326 0.000000e+00 2918
10 TraesCS6B01G023500 chr6A 83.114 1214 178 15 355 1548 7977696 7978902 0.000000e+00 1081
11 TraesCS6B01G023500 chr6D 92.857 1918 104 13 327 2225 7885685 7887588 0.000000e+00 2752
12 TraesCS6B01G023500 chr6D 86.463 1507 158 30 331 1803 7961817 7963311 0.000000e+00 1611
13 TraesCS6B01G023500 chr6D 86.595 1201 142 12 359 1548 7678765 7679957 0.000000e+00 1308
14 TraesCS6B01G023500 chr6D 84.126 1241 159 20 355 1567 7651500 7652730 0.000000e+00 1166
15 TraesCS6B01G023500 chr4A 85.833 1200 135 21 359 1532 667425302 667426492 0.000000e+00 1242
16 TraesCS6B01G023500 chr4A 84.298 1210 158 21 359 1548 667380019 667381216 0.000000e+00 1153
17 TraesCS6B01G023500 chr4B 97.756 312 6 1 1 312 622481701 622482011 1.030000e-148 536
18 TraesCS6B01G023500 chr2B 93.558 326 12 5 2224 2540 1190975 1191300 6.360000e-131 477
19 TraesCS6B01G023500 chr2B 92.835 321 18 5 2224 2540 105501048 105501367 6.400000e-126 460
20 TraesCS6B01G023500 chr1B 93.438 320 16 4 2224 2540 670235843 670236160 1.060000e-128 470
21 TraesCS6B01G023500 chr1B 92.966 327 13 5 2224 2540 512732824 512733150 3.830000e-128 468
22 TraesCS6B01G023500 chr5B 92.923 325 15 4 2224 2540 703559953 703559629 1.380000e-127 466
23 TraesCS6B01G023500 chr5B 92.615 325 15 5 2224 2540 547353592 547353269 2.300000e-125 459
24 TraesCS6B01G023500 chr3B 92.683 328 17 4 2220 2540 619144527 619144200 1.380000e-127 466
25 TraesCS6B01G023500 chr3B 92.923 325 15 4 2224 2540 759724579 759724255 1.380000e-127 466
26 TraesCS6B01G023500 chr3B 93.125 320 15 4 2224 2540 775297718 775297403 1.780000e-126 462
27 TraesCS6B01G023500 chr2D 92.642 299 17 2 17 315 46820121 46820414 2.340000e-115 425


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G023500 chr6B 14397711 14400250 2539 True 4691.0 4691 100.0000 1 2540 1 chr6B.!!$R1 2539
1 TraesCS6B01G023500 chr6B 54421091 54422302 1211 True 1230.0 1230 85.3160 355 1548 1 chr6B.!!$R4 1193
2 TraesCS6B01G023500 chr6B 14453839 14455061 1222 True 1177.0 1177 84.3470 359 1568 1 chr6B.!!$R2 1209
3 TraesCS6B01G023500 chr6B 39311043 39312268 1225 False 1101.0 1101 83.2250 359 1567 1 chr6B.!!$F1 1208
4 TraesCS6B01G023500 chr6B 13932135 13934114 1979 True 1004.5 1541 85.5110 359 2225 2 chr6B.!!$R5 1866
5 TraesCS6B01G023500 chr6B 14311093 14313072 1979 False 980.5 1513 84.9795 359 2225 2 chr6B.!!$F2 1866
6 TraesCS6B01G023500 chr6B 27064624 27065859 1235 True 632.0 632 76.4330 501 1725 1 chr6B.!!$R3 1224
7 TraesCS6B01G023500 chr6A 8170417 8172326 1909 False 2918.0 2918 94.3570 327 2225 1 chr6A.!!$F2 1898
8 TraesCS6B01G023500 chr6A 7977696 7978902 1206 False 1081.0 1081 83.1140 355 1548 1 chr6A.!!$F1 1193
9 TraesCS6B01G023500 chr6D 7885685 7887588 1903 False 2752.0 2752 92.8570 327 2225 1 chr6D.!!$F3 1898
10 TraesCS6B01G023500 chr6D 7961817 7963311 1494 False 1611.0 1611 86.4630 331 1803 1 chr6D.!!$F4 1472
11 TraesCS6B01G023500 chr6D 7678765 7679957 1192 False 1308.0 1308 86.5950 359 1548 1 chr6D.!!$F2 1189
12 TraesCS6B01G023500 chr6D 7651500 7652730 1230 False 1166.0 1166 84.1260 355 1567 1 chr6D.!!$F1 1212
13 TraesCS6B01G023500 chr4A 667425302 667426492 1190 False 1242.0 1242 85.8330 359 1532 1 chr4A.!!$F2 1173
14 TraesCS6B01G023500 chr4A 667380019 667381216 1197 False 1153.0 1153 84.2980 359 1548 1 chr4A.!!$F1 1189

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
322 323 0.107165 GTAGTTGCTCCCCCACCATC 60.107 60.0 0.0 0.0 0.0 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2264 2549 0.099082 GTTCACGAACCGGCACAAAA 59.901 50.0 0.0 0.0 35.36 2.44 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
49 50 6.827586 AGTAGAAGCTACTAGGATATGTGC 57.172 41.667 5.37 0.00 0.00 4.57
50 51 6.307776 AGTAGAAGCTACTAGGATATGTGCA 58.692 40.000 5.37 0.00 0.00 4.57
51 52 6.951198 AGTAGAAGCTACTAGGATATGTGCAT 59.049 38.462 5.37 0.00 0.00 3.96
52 53 8.110271 AGTAGAAGCTACTAGGATATGTGCATA 58.890 37.037 5.37 0.00 0.00 3.14
53 54 7.164230 AGAAGCTACTAGGATATGTGCATAC 57.836 40.000 0.00 0.00 0.00 2.39
54 55 6.721668 AGAAGCTACTAGGATATGTGCATACA 59.278 38.462 0.00 0.00 41.89 2.29
55 56 6.522625 AGCTACTAGGATATGTGCATACAG 57.477 41.667 0.00 0.00 40.79 2.74
56 57 5.420421 AGCTACTAGGATATGTGCATACAGG 59.580 44.000 0.00 0.00 40.79 4.00
57 58 5.419155 GCTACTAGGATATGTGCATACAGGA 59.581 44.000 0.00 0.00 40.79 3.86
58 59 5.991933 ACTAGGATATGTGCATACAGGAG 57.008 43.478 0.00 0.00 40.79 3.69
59 60 4.774726 ACTAGGATATGTGCATACAGGAGG 59.225 45.833 0.00 0.00 40.79 4.30
60 61 2.304180 AGGATATGTGCATACAGGAGGC 59.696 50.000 0.00 0.00 40.79 4.70
61 62 2.038952 GGATATGTGCATACAGGAGGCA 59.961 50.000 0.00 0.00 44.07 4.75
66 67 2.042686 TGCATACAGGAGGCATCAAC 57.957 50.000 0.00 0.00 40.67 3.18
67 68 0.940126 GCATACAGGAGGCATCAACG 59.060 55.000 0.00 0.00 34.07 4.10
68 69 0.940126 CATACAGGAGGCATCAACGC 59.060 55.000 0.00 0.00 0.00 4.84
69 70 0.833287 ATACAGGAGGCATCAACGCT 59.167 50.000 0.00 0.00 0.00 5.07
70 71 0.108186 TACAGGAGGCATCAACGCTG 60.108 55.000 0.00 0.43 0.00 5.18
71 72 1.376424 CAGGAGGCATCAACGCTGT 60.376 57.895 0.00 0.00 0.00 4.40
72 73 1.376424 AGGAGGCATCAACGCTGTG 60.376 57.895 0.00 0.00 0.00 3.66
73 74 1.375908 GGAGGCATCAACGCTGTGA 60.376 57.895 0.00 0.00 0.00 3.58
74 75 1.364626 GGAGGCATCAACGCTGTGAG 61.365 60.000 0.00 0.00 0.00 3.51
75 76 1.364626 GAGGCATCAACGCTGTGAGG 61.365 60.000 0.00 0.00 32.50 3.86
76 77 1.375908 GGCATCAACGCTGTGAGGA 60.376 57.895 2.74 0.00 30.89 3.71
77 78 0.745845 GGCATCAACGCTGTGAGGAT 60.746 55.000 2.74 0.00 30.89 3.24
78 79 1.089920 GCATCAACGCTGTGAGGATT 58.910 50.000 2.74 0.00 30.89 3.01
79 80 1.470098 GCATCAACGCTGTGAGGATTT 59.530 47.619 2.74 0.00 30.89 2.17
80 81 2.730090 GCATCAACGCTGTGAGGATTTG 60.730 50.000 2.74 0.00 30.89 2.32
81 82 2.542020 TCAACGCTGTGAGGATTTGA 57.458 45.000 0.00 0.00 0.00 2.69
82 83 2.844946 TCAACGCTGTGAGGATTTGAA 58.155 42.857 0.00 0.00 0.00 2.69
83 84 3.210227 TCAACGCTGTGAGGATTTGAAA 58.790 40.909 0.00 0.00 0.00 2.69
84 85 3.629855 TCAACGCTGTGAGGATTTGAAAA 59.370 39.130 0.00 0.00 0.00 2.29
85 86 4.278170 TCAACGCTGTGAGGATTTGAAAAT 59.722 37.500 0.00 0.00 0.00 1.82
86 87 4.853924 ACGCTGTGAGGATTTGAAAATT 57.146 36.364 0.00 0.00 0.00 1.82
87 88 5.957842 ACGCTGTGAGGATTTGAAAATTA 57.042 34.783 0.00 0.00 0.00 1.40
88 89 5.942872 ACGCTGTGAGGATTTGAAAATTAG 58.057 37.500 0.00 0.00 0.00 1.73
89 90 5.473504 ACGCTGTGAGGATTTGAAAATTAGT 59.526 36.000 0.00 0.00 0.00 2.24
90 91 6.024049 CGCTGTGAGGATTTGAAAATTAGTC 58.976 40.000 0.00 0.00 0.00 2.59
91 92 6.128172 CGCTGTGAGGATTTGAAAATTAGTCT 60.128 38.462 0.00 0.00 0.00 3.24
92 93 7.573843 CGCTGTGAGGATTTGAAAATTAGTCTT 60.574 37.037 0.00 0.00 0.00 3.01
93 94 8.730680 GCTGTGAGGATTTGAAAATTAGTCTTA 58.269 33.333 0.00 0.00 0.00 2.10
95 96 9.793259 TGTGAGGATTTGAAAATTAGTCTTACT 57.207 29.630 0.00 0.00 0.00 2.24
115 116 9.627123 TCTTACTTATTAGGGACAAAATGATGG 57.373 33.333 0.00 0.00 0.00 3.51
116 117 8.760980 TTACTTATTAGGGACAAAATGATGGG 57.239 34.615 0.00 0.00 0.00 4.00
117 118 6.980577 ACTTATTAGGGACAAAATGATGGGA 58.019 36.000 0.00 0.00 0.00 4.37
118 119 7.595488 ACTTATTAGGGACAAAATGATGGGAT 58.405 34.615 0.00 0.00 0.00 3.85
119 120 8.732854 ACTTATTAGGGACAAAATGATGGGATA 58.267 33.333 0.00 0.00 0.00 2.59
120 121 9.759473 CTTATTAGGGACAAAATGATGGGATAT 57.241 33.333 0.00 0.00 0.00 1.63
121 122 9.532494 TTATTAGGGACAAAATGATGGGATATG 57.468 33.333 0.00 0.00 0.00 1.78
122 123 5.668135 AGGGACAAAATGATGGGATATGA 57.332 39.130 0.00 0.00 0.00 2.15
123 124 5.638133 AGGGACAAAATGATGGGATATGAG 58.362 41.667 0.00 0.00 0.00 2.90
124 125 5.373555 AGGGACAAAATGATGGGATATGAGA 59.626 40.000 0.00 0.00 0.00 3.27
125 126 6.070656 GGGACAAAATGATGGGATATGAGAA 58.929 40.000 0.00 0.00 0.00 2.87
126 127 6.550854 GGGACAAAATGATGGGATATGAGAAA 59.449 38.462 0.00 0.00 0.00 2.52
127 128 7.255730 GGGACAAAATGATGGGATATGAGAAAG 60.256 40.741 0.00 0.00 0.00 2.62
128 129 7.255730 GGACAAAATGATGGGATATGAGAAAGG 60.256 40.741 0.00 0.00 0.00 3.11
129 130 7.128077 ACAAAATGATGGGATATGAGAAAGGT 58.872 34.615 0.00 0.00 0.00 3.50
130 131 7.069085 ACAAAATGATGGGATATGAGAAAGGTG 59.931 37.037 0.00 0.00 0.00 4.00
131 132 6.520021 AATGATGGGATATGAGAAAGGTGA 57.480 37.500 0.00 0.00 0.00 4.02
132 133 5.557576 TGATGGGATATGAGAAAGGTGAG 57.442 43.478 0.00 0.00 0.00 3.51
133 134 4.349048 TGATGGGATATGAGAAAGGTGAGG 59.651 45.833 0.00 0.00 0.00 3.86
134 135 3.736094 TGGGATATGAGAAAGGTGAGGT 58.264 45.455 0.00 0.00 0.00 3.85
135 136 3.455910 TGGGATATGAGAAAGGTGAGGTG 59.544 47.826 0.00 0.00 0.00 4.00
136 137 3.181450 GGGATATGAGAAAGGTGAGGTGG 60.181 52.174 0.00 0.00 0.00 4.61
137 138 3.711704 GGATATGAGAAAGGTGAGGTGGA 59.288 47.826 0.00 0.00 0.00 4.02
138 139 4.349342 GGATATGAGAAAGGTGAGGTGGAT 59.651 45.833 0.00 0.00 0.00 3.41
139 140 5.544176 GGATATGAGAAAGGTGAGGTGGATA 59.456 44.000 0.00 0.00 0.00 2.59
140 141 4.762289 ATGAGAAAGGTGAGGTGGATAC 57.238 45.455 0.00 0.00 0.00 2.24
141 142 3.791320 TGAGAAAGGTGAGGTGGATACT 58.209 45.455 0.00 0.00 37.61 2.12
142 143 3.515502 TGAGAAAGGTGAGGTGGATACTG 59.484 47.826 0.00 0.00 37.61 2.74
143 144 3.515901 GAGAAAGGTGAGGTGGATACTGT 59.484 47.826 0.00 0.00 37.61 3.55
144 145 4.684724 AGAAAGGTGAGGTGGATACTGTA 58.315 43.478 0.00 0.00 37.61 2.74
145 146 5.091552 AGAAAGGTGAGGTGGATACTGTAA 58.908 41.667 0.00 0.00 37.61 2.41
146 147 5.546499 AGAAAGGTGAGGTGGATACTGTAAA 59.454 40.000 0.00 0.00 37.61 2.01
147 148 5.836024 AAGGTGAGGTGGATACTGTAAAA 57.164 39.130 0.00 0.00 37.61 1.52
148 149 5.422214 AGGTGAGGTGGATACTGTAAAAG 57.578 43.478 0.00 0.00 37.61 2.27
149 150 4.844655 AGGTGAGGTGGATACTGTAAAAGT 59.155 41.667 0.00 0.00 43.40 2.66
150 151 5.309806 AGGTGAGGTGGATACTGTAAAAGTT 59.690 40.000 0.00 0.00 40.56 2.66
151 152 6.499350 AGGTGAGGTGGATACTGTAAAAGTTA 59.501 38.462 0.00 0.00 40.56 2.24
152 153 7.016858 AGGTGAGGTGGATACTGTAAAAGTTAA 59.983 37.037 0.00 0.00 40.56 2.01
153 154 7.662669 GGTGAGGTGGATACTGTAAAAGTTAAA 59.337 37.037 0.00 0.00 40.56 1.52
154 155 9.227777 GTGAGGTGGATACTGTAAAAGTTAAAT 57.772 33.333 0.00 0.00 40.56 1.40
155 156 9.802039 TGAGGTGGATACTGTAAAAGTTAAATT 57.198 29.630 0.00 0.00 40.56 1.82
170 171 8.879427 AAAGTTAAATTCTATGCCTAACCAGT 57.121 30.769 0.00 0.00 0.00 4.00
171 172 8.879427 AAGTTAAATTCTATGCCTAACCAGTT 57.121 30.769 0.00 0.00 0.00 3.16
172 173 8.879427 AGTTAAATTCTATGCCTAACCAGTTT 57.121 30.769 0.00 0.00 0.00 2.66
173 174 8.957466 AGTTAAATTCTATGCCTAACCAGTTTC 58.043 33.333 0.00 0.00 0.00 2.78
174 175 8.736244 GTTAAATTCTATGCCTAACCAGTTTCA 58.264 33.333 0.00 0.00 0.00 2.69
175 176 7.396540 AAATTCTATGCCTAACCAGTTTCAG 57.603 36.000 0.00 0.00 0.00 3.02
176 177 4.487714 TCTATGCCTAACCAGTTTCAGG 57.512 45.455 0.00 0.00 0.00 3.86
177 178 2.514458 ATGCCTAACCAGTTTCAGGG 57.486 50.000 2.36 0.00 0.00 4.45
178 179 0.404040 TGCCTAACCAGTTTCAGGGG 59.596 55.000 2.36 0.00 0.00 4.79
179 180 0.323451 GCCTAACCAGTTTCAGGGGG 60.323 60.000 2.36 0.00 0.00 5.40
210 211 8.779303 TCATAAAATGTATATTTAGTGGCGTGG 58.221 33.333 0.00 0.00 35.50 4.94
211 212 6.385649 AAAATGTATATTTAGTGGCGTGGG 57.614 37.500 0.00 0.00 35.50 4.61
212 213 3.478857 TGTATATTTAGTGGCGTGGGG 57.521 47.619 0.00 0.00 0.00 4.96
213 214 2.773087 TGTATATTTAGTGGCGTGGGGT 59.227 45.455 0.00 0.00 0.00 4.95
214 215 2.341846 ATATTTAGTGGCGTGGGGTG 57.658 50.000 0.00 0.00 0.00 4.61
215 216 1.277579 TATTTAGTGGCGTGGGGTGA 58.722 50.000 0.00 0.00 0.00 4.02
216 217 0.322187 ATTTAGTGGCGTGGGGTGAC 60.322 55.000 0.00 0.00 0.00 3.67
217 218 1.412453 TTTAGTGGCGTGGGGTGACT 61.412 55.000 0.00 0.00 0.00 3.41
218 219 1.823169 TTAGTGGCGTGGGGTGACTC 61.823 60.000 0.00 0.00 0.00 3.36
219 220 4.699522 GTGGCGTGGGGTGACTCC 62.700 72.222 0.00 0.00 0.00 3.85
221 222 3.717294 GGCGTGGGGTGACTCCAT 61.717 66.667 7.79 0.00 36.58 3.41
222 223 2.125106 GCGTGGGGTGACTCCATC 60.125 66.667 7.79 0.00 36.58 3.51
223 224 2.954684 GCGTGGGGTGACTCCATCA 61.955 63.158 7.79 0.00 36.58 3.07
224 225 1.676968 CGTGGGGTGACTCCATCAA 59.323 57.895 7.79 0.00 39.72 2.57
225 226 0.391661 CGTGGGGTGACTCCATCAAG 60.392 60.000 7.79 0.00 39.72 3.02
226 227 0.984230 GTGGGGTGACTCCATCAAGA 59.016 55.000 7.79 0.00 39.72 3.02
227 228 1.351017 GTGGGGTGACTCCATCAAGAA 59.649 52.381 7.79 0.00 39.72 2.52
228 229 2.025887 GTGGGGTGACTCCATCAAGAAT 60.026 50.000 7.79 0.00 39.72 2.40
229 230 2.239654 TGGGGTGACTCCATCAAGAATC 59.760 50.000 0.00 0.00 39.72 2.52
230 231 2.507471 GGGGTGACTCCATCAAGAATCT 59.493 50.000 0.00 0.00 39.72 2.40
231 232 3.539604 GGGTGACTCCATCAAGAATCTG 58.460 50.000 0.00 0.00 39.72 2.90
232 233 3.054802 GGGTGACTCCATCAAGAATCTGT 60.055 47.826 0.00 0.00 39.72 3.41
233 234 4.162320 GGGTGACTCCATCAAGAATCTGTA 59.838 45.833 0.00 0.00 39.72 2.74
234 235 5.112686 GGTGACTCCATCAAGAATCTGTAC 58.887 45.833 0.00 0.00 39.72 2.90
235 236 5.112686 GTGACTCCATCAAGAATCTGTACC 58.887 45.833 0.00 0.00 39.72 3.34
236 237 4.777366 TGACTCCATCAAGAATCTGTACCA 59.223 41.667 0.00 0.00 33.02 3.25
237 238 5.426509 TGACTCCATCAAGAATCTGTACCAT 59.573 40.000 0.00 0.00 33.02 3.55
238 239 6.070021 TGACTCCATCAAGAATCTGTACCATT 60.070 38.462 0.00 0.00 33.02 3.16
239 240 6.352516 ACTCCATCAAGAATCTGTACCATTC 58.647 40.000 6.55 6.55 0.00 2.67
240 241 6.070021 ACTCCATCAAGAATCTGTACCATTCA 60.070 38.462 14.13 0.00 33.34 2.57
241 242 6.903516 TCCATCAAGAATCTGTACCATTCAT 58.096 36.000 14.13 3.08 33.34 2.57
242 243 6.769341 TCCATCAAGAATCTGTACCATTCATG 59.231 38.462 14.13 12.59 33.34 3.07
243 244 6.544931 CCATCAAGAATCTGTACCATTCATGT 59.455 38.462 14.13 4.47 32.95 3.21
244 245 7.067859 CCATCAAGAATCTGTACCATTCATGTT 59.932 37.037 14.13 7.22 32.95 2.71
245 246 7.615582 TCAAGAATCTGTACCATTCATGTTC 57.384 36.000 14.13 0.00 32.95 3.18
246 247 6.313658 TCAAGAATCTGTACCATTCATGTTCG 59.686 38.462 14.13 0.00 32.95 3.95
247 248 5.977635 AGAATCTGTACCATTCATGTTCGA 58.022 37.500 14.13 0.00 33.34 3.71
248 249 6.586344 AGAATCTGTACCATTCATGTTCGAT 58.414 36.000 14.13 0.00 33.34 3.59
249 250 7.050377 AGAATCTGTACCATTCATGTTCGATT 58.950 34.615 14.13 0.00 33.34 3.34
250 251 6.851222 ATCTGTACCATTCATGTTCGATTC 57.149 37.500 0.00 0.00 0.00 2.52
251 252 4.803613 TCTGTACCATTCATGTTCGATTCG 59.196 41.667 0.00 0.00 0.00 3.34
252 253 4.749976 TGTACCATTCATGTTCGATTCGA 58.250 39.130 4.29 4.29 0.00 3.71
253 254 5.356426 TGTACCATTCATGTTCGATTCGAT 58.644 37.500 9.96 0.00 35.23 3.59
254 255 4.801147 ACCATTCATGTTCGATTCGATG 57.199 40.909 9.96 5.73 35.23 3.84
255 256 3.561310 ACCATTCATGTTCGATTCGATGG 59.439 43.478 16.92 16.92 35.23 3.51
256 257 3.548587 CATTCATGTTCGATTCGATGGC 58.451 45.455 9.96 4.46 35.23 4.40
257 258 1.581934 TCATGTTCGATTCGATGGCC 58.418 50.000 9.96 0.00 35.23 5.36
258 259 0.588252 CATGTTCGATTCGATGGCCC 59.412 55.000 9.96 0.00 35.23 5.80
259 260 0.180171 ATGTTCGATTCGATGGCCCA 59.820 50.000 9.96 2.97 35.23 5.36
260 261 0.461870 TGTTCGATTCGATGGCCCAG 60.462 55.000 9.96 0.00 35.23 4.45
261 262 0.179084 GTTCGATTCGATGGCCCAGA 60.179 55.000 9.96 0.00 35.23 3.86
262 263 0.758734 TTCGATTCGATGGCCCAGAT 59.241 50.000 9.96 0.00 35.23 2.90
263 264 0.758734 TCGATTCGATGGCCCAGATT 59.241 50.000 4.29 0.00 0.00 2.40
264 265 1.967779 TCGATTCGATGGCCCAGATTA 59.032 47.619 4.29 0.00 0.00 1.75
265 266 2.029020 TCGATTCGATGGCCCAGATTAG 60.029 50.000 4.29 0.00 0.00 1.73
266 267 2.289072 CGATTCGATGGCCCAGATTAGT 60.289 50.000 0.00 0.00 0.00 2.24
267 268 3.744660 GATTCGATGGCCCAGATTAGTT 58.255 45.455 0.00 0.00 0.00 2.24
268 269 3.644966 TTCGATGGCCCAGATTAGTTT 57.355 42.857 0.00 0.00 0.00 2.66
269 270 3.644966 TCGATGGCCCAGATTAGTTTT 57.355 42.857 0.00 0.00 0.00 2.43
270 271 3.963129 TCGATGGCCCAGATTAGTTTTT 58.037 40.909 0.00 0.00 0.00 1.94
310 311 8.812329 CACAAGTCTAGATTCTATTGTAGTTGC 58.188 37.037 9.66 0.00 30.23 4.17
311 312 8.754080 ACAAGTCTAGATTCTATTGTAGTTGCT 58.246 33.333 8.67 0.00 0.00 3.91
312 313 9.243637 CAAGTCTAGATTCTATTGTAGTTGCTC 57.756 37.037 0.00 0.00 0.00 4.26
313 314 7.947282 AGTCTAGATTCTATTGTAGTTGCTCC 58.053 38.462 0.00 0.00 0.00 4.70
314 315 7.014808 AGTCTAGATTCTATTGTAGTTGCTCCC 59.985 40.741 0.00 0.00 0.00 4.30
315 316 5.297569 AGATTCTATTGTAGTTGCTCCCC 57.702 43.478 0.00 0.00 0.00 4.81
316 317 3.926058 TTCTATTGTAGTTGCTCCCCC 57.074 47.619 0.00 0.00 0.00 5.40
317 318 2.840511 TCTATTGTAGTTGCTCCCCCA 58.159 47.619 0.00 0.00 0.00 4.96
318 319 2.504175 TCTATTGTAGTTGCTCCCCCAC 59.496 50.000 0.00 0.00 0.00 4.61
319 320 0.331616 ATTGTAGTTGCTCCCCCACC 59.668 55.000 0.00 0.00 0.00 4.61
320 321 1.063070 TTGTAGTTGCTCCCCCACCA 61.063 55.000 0.00 0.00 0.00 4.17
321 322 0.844661 TGTAGTTGCTCCCCCACCAT 60.845 55.000 0.00 0.00 0.00 3.55
322 323 0.107165 GTAGTTGCTCCCCCACCATC 60.107 60.000 0.00 0.00 0.00 3.51
323 324 1.622607 TAGTTGCTCCCCCACCATCG 61.623 60.000 0.00 0.00 0.00 3.84
324 325 3.727258 TTGCTCCCCCACCATCGG 61.727 66.667 0.00 0.00 0.00 4.18
325 326 4.731853 TGCTCCCCCACCATCGGA 62.732 66.667 0.00 0.00 0.00 4.55
326 327 3.866582 GCTCCCCCACCATCGGAG 61.867 72.222 0.00 0.00 45.12 4.63
327 328 3.164269 CTCCCCCACCATCGGAGG 61.164 72.222 0.00 0.00 39.69 4.30
328 329 3.690206 TCCCCCACCATCGGAGGA 61.690 66.667 0.00 0.00 35.40 3.71
329 330 3.164269 CCCCCACCATCGGAGGAG 61.164 72.222 0.00 0.00 35.40 3.69
435 466 3.429372 ATCTCCTCTCCGCCGCTCT 62.429 63.158 0.00 0.00 0.00 4.09
459 490 2.295143 TCCTTCTACCACCCTACTCCT 58.705 52.381 0.00 0.00 0.00 3.69
473 508 1.377690 ACTCCTCTCTCTCTCCACCA 58.622 55.000 0.00 0.00 0.00 4.17
979 1038 2.483538 GGTGCTTGTGAAATTGCCAAGT 60.484 45.455 13.21 0.00 38.24 3.16
1069 1128 0.262580 AGGTATAGGTGTGCCCCGTA 59.737 55.000 0.00 0.00 34.57 4.02
1084 1143 1.560923 CCGTAGCTCTGGAATGTTCG 58.439 55.000 0.00 0.00 0.00 3.95
1089 1148 1.648467 GCTCTGGAATGTTCGGGCAC 61.648 60.000 0.00 0.00 0.00 5.01
1092 1151 3.810896 GGAATGTTCGGGCACGCC 61.811 66.667 1.67 0.00 40.69 5.68
1134 1193 0.459489 GCGAGGAGAAGATCACTGCT 59.541 55.000 12.15 12.15 38.66 4.24
1269 1328 3.702045 CCGACTTCCTTATCTCTGAGGTT 59.298 47.826 4.59 0.00 34.57 3.50
1438 1497 5.551305 TGAGACTGAGAAGGTTTTCATGA 57.449 39.130 0.00 0.00 35.70 3.07
1493 1552 2.094494 CACACCTCGCTGAAGACTATGT 60.094 50.000 0.00 0.00 0.00 2.29
1536 1595 2.731976 GCCGGCTAGATTCAGATTTACG 59.268 50.000 22.15 0.00 0.00 3.18
1571 1630 5.087323 TGGGCTATGAAAATTGGTAAACCA 58.913 37.500 0.00 0.00 45.94 3.67
1599 1658 4.259770 CGGTGCAACAAAGTTTTCATTGTC 60.260 41.667 0.98 1.45 40.19 3.18
1896 2177 2.918345 GCGATGTTGGCTTGCACCA 61.918 57.895 0.00 0.00 38.16 4.17
1912 2193 4.172346 CAATGGCATTGGTGTGCG 57.828 55.556 28.45 4.79 45.97 5.34
1921 2202 2.443260 ATTGGTGTGCGCCGTGACTA 62.443 55.000 4.18 0.00 0.00 2.59
2024 2306 1.800805 CGTTCAGGTTGAGTGATGCT 58.199 50.000 0.00 0.00 0.00 3.79
2053 2335 6.465084 GTGAGTATTCCTGTGTCTAAGGTTT 58.535 40.000 0.00 0.00 36.14 3.27
2070 2352 3.454082 AGGTTTTGATTTTGTTGAGGGCA 59.546 39.130 0.00 0.00 0.00 5.36
2231 2516 9.502091 AGTTTCTTATGACAATTAACTAGTGCA 57.498 29.630 0.00 0.00 0.00 4.57
2232 2517 9.760660 GTTTCTTATGACAATTAACTAGTGCAG 57.239 33.333 0.00 0.00 0.00 4.41
2233 2518 9.719355 TTTCTTATGACAATTAACTAGTGCAGA 57.281 29.630 0.00 0.00 0.00 4.26
2234 2519 9.719355 TTCTTATGACAATTAACTAGTGCAGAA 57.281 29.630 0.00 0.00 0.00 3.02
2235 2520 9.151471 TCTTATGACAATTAACTAGTGCAGAAC 57.849 33.333 0.00 0.00 0.00 3.01
2236 2521 9.155975 CTTATGACAATTAACTAGTGCAGAACT 57.844 33.333 0.00 0.00 43.40 3.01
2237 2522 6.785488 TGACAATTAACTAGTGCAGAACTG 57.215 37.500 0.00 0.00 40.26 3.16
2238 2523 5.700832 TGACAATTAACTAGTGCAGAACTGG 59.299 40.000 0.00 0.00 42.86 4.00
2239 2524 4.455877 ACAATTAACTAGTGCAGAACTGGC 59.544 41.667 0.00 0.00 40.95 4.85
2240 2525 2.762535 TAACTAGTGCAGAACTGGCC 57.237 50.000 0.00 0.00 40.95 5.36
2241 2526 1.059913 AACTAGTGCAGAACTGGCCT 58.940 50.000 3.32 0.00 40.95 5.19
2242 2527 1.059913 ACTAGTGCAGAACTGGCCTT 58.940 50.000 3.32 0.00 40.95 4.35
2243 2528 1.421646 ACTAGTGCAGAACTGGCCTTT 59.578 47.619 3.32 0.00 40.95 3.11
2244 2529 2.158608 ACTAGTGCAGAACTGGCCTTTT 60.159 45.455 3.32 0.00 40.95 2.27
2245 2530 1.035139 AGTGCAGAACTGGCCTTTTG 58.965 50.000 3.32 0.00 37.88 2.44
2246 2531 0.746659 GTGCAGAACTGGCCTTTTGT 59.253 50.000 3.32 0.00 0.00 2.83
2247 2532 0.746063 TGCAGAACTGGCCTTTTGTG 59.254 50.000 3.32 6.99 0.00 3.33
2248 2533 0.598419 GCAGAACTGGCCTTTTGTGC 60.598 55.000 18.69 18.69 35.18 4.57
2254 2539 2.818841 GGCCTTTTGTGCCGGTTT 59.181 55.556 1.90 0.00 39.48 3.27
2255 2540 1.594021 GGCCTTTTGTGCCGGTTTG 60.594 57.895 1.90 0.00 39.48 2.93
2256 2541 1.142965 GCCTTTTGTGCCGGTTTGT 59.857 52.632 1.90 0.00 0.00 2.83
2257 2542 1.151172 GCCTTTTGTGCCGGTTTGTG 61.151 55.000 1.90 0.00 0.00 3.33
2258 2543 0.457851 CCTTTTGTGCCGGTTTGTGA 59.542 50.000 1.90 0.00 0.00 3.58
2259 2544 1.134965 CCTTTTGTGCCGGTTTGTGAA 60.135 47.619 1.90 0.00 0.00 3.18
2260 2545 2.192624 CTTTTGTGCCGGTTTGTGAAG 58.807 47.619 1.90 0.00 0.00 3.02
2261 2546 0.457851 TTTGTGCCGGTTTGTGAAGG 59.542 50.000 1.90 0.00 0.00 3.46
2264 2549 2.597510 GCCGGTTTGTGAAGGCCT 60.598 61.111 0.00 0.00 43.54 5.19
2265 2550 2.200337 GCCGGTTTGTGAAGGCCTT 61.200 57.895 20.65 20.65 43.54 4.35
2266 2551 1.744320 GCCGGTTTGTGAAGGCCTTT 61.744 55.000 21.54 2.85 43.54 3.11
2267 2552 0.750249 CCGGTTTGTGAAGGCCTTTT 59.250 50.000 21.54 0.00 0.00 2.27
2268 2553 1.537990 CCGGTTTGTGAAGGCCTTTTG 60.538 52.381 21.54 3.58 0.00 2.44
2269 2554 1.136110 CGGTTTGTGAAGGCCTTTTGT 59.864 47.619 21.54 0.00 0.00 2.83
2270 2555 2.549926 GGTTTGTGAAGGCCTTTTGTG 58.450 47.619 21.54 0.00 0.00 3.33
2271 2556 1.933181 GTTTGTGAAGGCCTTTTGTGC 59.067 47.619 21.54 6.83 0.00 4.57
2277 2562 2.338620 GGCCTTTTGTGCCGGTTC 59.661 61.111 1.90 0.00 39.48 3.62
2278 2563 2.050442 GCCTTTTGTGCCGGTTCG 60.050 61.111 1.90 0.00 0.00 3.95
2279 2564 2.841160 GCCTTTTGTGCCGGTTCGT 61.841 57.895 1.90 0.00 0.00 3.85
2280 2565 1.008995 CCTTTTGTGCCGGTTCGTG 60.009 57.895 1.90 0.00 0.00 4.35
2281 2566 1.440938 CCTTTTGTGCCGGTTCGTGA 61.441 55.000 1.90 0.00 0.00 4.35
2282 2567 0.378962 CTTTTGTGCCGGTTCGTGAA 59.621 50.000 1.90 0.00 0.00 3.18
2283 2568 0.099082 TTTTGTGCCGGTTCGTGAAC 59.901 50.000 1.90 4.15 40.45 3.18
2291 2576 4.659480 GTTCGTGAACCGGCACTA 57.341 55.556 0.00 0.00 36.65 2.74
2292 2577 2.903284 GTTCGTGAACCGGCACTAA 58.097 52.632 0.00 0.00 36.65 2.24
2293 2578 1.219646 GTTCGTGAACCGGCACTAAA 58.780 50.000 0.00 0.00 36.65 1.85
2294 2579 1.193874 GTTCGTGAACCGGCACTAAAG 59.806 52.381 0.00 0.00 36.65 1.85
2295 2580 0.675083 TCGTGAACCGGCACTAAAGA 59.325 50.000 0.00 0.00 36.65 2.52
2296 2581 1.068474 CGTGAACCGGCACTAAAGAG 58.932 55.000 0.00 0.00 36.65 2.85
2297 2582 1.604693 CGTGAACCGGCACTAAAGAGT 60.605 52.381 0.00 0.00 36.65 3.24
2298 2583 5.942396 TCGTGAACCGGCACTAAAGAGTG 62.942 52.174 0.00 0.61 44.98 3.51
2310 2595 4.500452 ACTAAAGAGTGGGGACTAAAGGT 58.500 43.478 0.00 0.00 33.41 3.50
2311 2596 4.531339 ACTAAAGAGTGGGGACTAAAGGTC 59.469 45.833 0.00 0.00 38.17 3.85
2332 2617 0.176449 CCCCCTTTAGTACCGGTTCG 59.824 60.000 15.04 0.00 0.00 3.95
2333 2618 0.897621 CCCCTTTAGTACCGGTTCGT 59.102 55.000 15.04 0.00 0.00 3.85
2334 2619 1.134995 CCCCTTTAGTACCGGTTCGTC 60.135 57.143 15.04 1.07 0.00 4.20
2335 2620 1.545582 CCCTTTAGTACCGGTTCGTCA 59.454 52.381 15.04 0.00 0.00 4.35
2336 2621 2.416431 CCCTTTAGTACCGGTTCGTCAG 60.416 54.545 15.04 6.01 0.00 3.51
2337 2622 2.489329 CCTTTAGTACCGGTTCGTCAGA 59.511 50.000 15.04 0.00 0.00 3.27
2338 2623 3.057315 CCTTTAGTACCGGTTCGTCAGAA 60.057 47.826 15.04 0.19 0.00 3.02
2348 2633 2.074547 TTCGTCAGAACCGGCTAAAG 57.925 50.000 0.00 0.00 0.00 1.85
2349 2634 0.963962 TCGTCAGAACCGGCTAAAGT 59.036 50.000 0.00 0.00 0.00 2.66
2350 2635 1.068474 CGTCAGAACCGGCTAAAGTG 58.932 55.000 0.00 0.00 0.00 3.16
2351 2636 0.796927 GTCAGAACCGGCTAAAGTGC 59.203 55.000 0.00 0.00 0.00 4.40
2359 2644 4.058797 GCTAAAGTGCCACCACGT 57.941 55.556 0.00 0.00 46.62 4.49
2360 2645 1.574428 GCTAAAGTGCCACCACGTG 59.426 57.895 9.08 9.08 46.62 4.49
2383 2668 4.684134 AGCCAGGCCCGTTTGCAT 62.684 61.111 8.22 0.00 0.00 3.96
2384 2669 4.440127 GCCAGGCCCGTTTGCATG 62.440 66.667 0.00 0.00 42.38 4.06
2385 2670 2.990967 CCAGGCCCGTTTGCATGT 60.991 61.111 0.00 0.00 41.22 3.21
2386 2671 1.677300 CCAGGCCCGTTTGCATGTA 60.677 57.895 0.00 0.00 41.22 2.29
2387 2672 1.656818 CCAGGCCCGTTTGCATGTAG 61.657 60.000 0.00 0.00 41.22 2.74
2388 2673 1.378514 AGGCCCGTTTGCATGTAGG 60.379 57.895 0.00 0.00 0.00 3.18
2389 2674 2.414785 GGCCCGTTTGCATGTAGGG 61.415 63.158 11.38 11.38 44.72 3.53
2390 2675 3.196648 CCCGTTTGCATGTAGGGC 58.803 61.111 4.46 0.00 35.09 5.19
2391 2676 1.677300 CCCGTTTGCATGTAGGGCA 60.677 57.895 4.46 0.00 40.00 5.36
2392 2677 1.037030 CCCGTTTGCATGTAGGGCAT 61.037 55.000 4.46 0.00 41.58 4.40
2393 2678 0.817013 CCGTTTGCATGTAGGGCATT 59.183 50.000 0.00 0.00 41.58 3.56
2394 2679 2.020720 CCGTTTGCATGTAGGGCATTA 58.979 47.619 0.00 0.00 41.58 1.90
2395 2680 2.033299 CCGTTTGCATGTAGGGCATTAG 59.967 50.000 0.00 0.00 41.58 1.73
2396 2681 2.682856 CGTTTGCATGTAGGGCATTAGT 59.317 45.455 0.00 0.00 41.58 2.24
2397 2682 3.874543 CGTTTGCATGTAGGGCATTAGTA 59.125 43.478 0.00 0.00 41.58 1.82
2398 2683 4.260620 CGTTTGCATGTAGGGCATTAGTAC 60.261 45.833 0.00 0.00 41.58 2.73
2399 2684 3.485463 TGCATGTAGGGCATTAGTACC 57.515 47.619 0.00 0.00 36.11 3.34
2400 2685 2.224185 TGCATGTAGGGCATTAGTACCG 60.224 50.000 0.00 0.00 36.11 4.02
2401 2686 2.870435 GCATGTAGGGCATTAGTACCGG 60.870 54.545 0.00 0.00 35.19 5.28
2402 2687 2.163810 TGTAGGGCATTAGTACCGGT 57.836 50.000 13.98 13.98 0.00 5.28
2403 2688 2.469952 TGTAGGGCATTAGTACCGGTT 58.530 47.619 15.04 0.00 0.00 4.44
2404 2689 2.168936 TGTAGGGCATTAGTACCGGTTG 59.831 50.000 15.04 5.42 0.00 3.77
2405 2690 0.544697 AGGGCATTAGTACCGGTTGG 59.455 55.000 15.04 0.00 42.84 3.77
2432 2717 3.822167 ACCAACCGGTACTAAATGTTTGG 59.178 43.478 8.00 10.60 46.71 3.28
2433 2718 3.191791 CCAACCGGTACTAAATGTTTGGG 59.808 47.826 8.00 0.00 31.35 4.12
2434 2719 3.793819 ACCGGTACTAAATGTTTGGGT 57.206 42.857 4.49 0.00 0.00 4.51
2435 2720 3.414269 ACCGGTACTAAATGTTTGGGTG 58.586 45.455 4.49 0.00 0.00 4.61
2436 2721 3.181441 ACCGGTACTAAATGTTTGGGTGT 60.181 43.478 4.49 0.00 0.00 4.16
2437 2722 3.822167 CCGGTACTAAATGTTTGGGTGTT 59.178 43.478 0.00 0.00 0.00 3.32
2438 2723 4.278919 CCGGTACTAAATGTTTGGGTGTTT 59.721 41.667 0.00 0.00 0.00 2.83
2439 2724 5.221283 CCGGTACTAAATGTTTGGGTGTTTT 60.221 40.000 0.00 0.00 0.00 2.43
2440 2725 6.274579 CGGTACTAAATGTTTGGGTGTTTTT 58.725 36.000 0.00 0.00 0.00 1.94
2520 2805 9.349713 TGAGTTGTTAAATCATTAGGTGAAAGT 57.650 29.630 0.00 0.00 40.97 2.66
2523 2808 9.836076 GTTGTTAAATCATTAGGTGAAAGTACC 57.164 33.333 0.00 0.00 40.97 3.34
2524 2809 8.259049 TGTTAAATCATTAGGTGAAAGTACCG 57.741 34.615 0.00 0.00 45.56 4.02
2525 2810 5.813080 AAATCATTAGGTGAAAGTACCGC 57.187 39.130 0.00 0.00 45.56 5.68
2526 2811 2.883574 TCATTAGGTGAAAGTACCGCG 58.116 47.619 0.00 0.00 45.56 6.46
2527 2812 1.931172 CATTAGGTGAAAGTACCGCGG 59.069 52.381 26.86 26.86 45.56 6.46
2528 2813 1.255882 TTAGGTGAAAGTACCGCGGA 58.744 50.000 35.90 13.31 45.56 5.54
2529 2814 1.477553 TAGGTGAAAGTACCGCGGAT 58.522 50.000 35.90 18.92 45.56 4.18
2530 2815 0.611714 AGGTGAAAGTACCGCGGATT 59.388 50.000 35.90 20.25 45.56 3.01
2531 2816 1.826720 AGGTGAAAGTACCGCGGATTA 59.173 47.619 35.90 12.60 45.56 1.75
2532 2817 2.159142 AGGTGAAAGTACCGCGGATTAG 60.159 50.000 35.90 4.58 45.56 1.73
2533 2818 2.417787 GGTGAAAGTACCGCGGATTAGT 60.418 50.000 35.90 15.21 0.00 2.24
2534 2819 3.256558 GTGAAAGTACCGCGGATTAGTT 58.743 45.455 35.90 20.53 0.00 2.24
2535 2820 3.681417 GTGAAAGTACCGCGGATTAGTTT 59.319 43.478 35.90 27.26 0.00 2.66
2536 2821 3.928375 TGAAAGTACCGCGGATTAGTTTC 59.072 43.478 30.62 30.62 37.81 2.78
2537 2822 2.199291 AGTACCGCGGATTAGTTTCG 57.801 50.000 35.90 0.02 0.00 3.46
2538 2823 1.745087 AGTACCGCGGATTAGTTTCGA 59.255 47.619 35.90 0.00 0.00 3.71
2539 2824 1.848608 GTACCGCGGATTAGTTTCGAC 59.151 52.381 35.90 9.18 0.00 4.20
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 8.794553 GCACATATCCTAGTAGCTTCTACTAAA 58.205 37.037 12.95 6.68 30.55 1.85
24 25 7.942894 TGCACATATCCTAGTAGCTTCTACTAA 59.057 37.037 12.95 2.72 30.55 2.24
25 26 7.459234 TGCACATATCCTAGTAGCTTCTACTA 58.541 38.462 11.78 11.78 0.00 1.82
26 27 6.307776 TGCACATATCCTAGTAGCTTCTACT 58.692 40.000 10.84 10.84 0.00 2.57
27 28 6.576662 TGCACATATCCTAGTAGCTTCTAC 57.423 41.667 0.00 0.00 0.00 2.59
28 29 7.888546 TGTATGCACATATCCTAGTAGCTTCTA 59.111 37.037 0.00 0.00 0.00 2.10
29 30 6.721668 TGTATGCACATATCCTAGTAGCTTCT 59.278 38.462 0.00 0.00 0.00 2.85
30 31 6.925211 TGTATGCACATATCCTAGTAGCTTC 58.075 40.000 0.00 0.00 0.00 3.86
31 32 6.071108 CCTGTATGCACATATCCTAGTAGCTT 60.071 42.308 0.00 0.00 33.14 3.74
32 33 5.420421 CCTGTATGCACATATCCTAGTAGCT 59.580 44.000 0.00 0.00 33.14 3.32
33 34 5.419155 TCCTGTATGCACATATCCTAGTAGC 59.581 44.000 0.00 0.00 33.14 3.58
34 35 6.096141 CCTCCTGTATGCACATATCCTAGTAG 59.904 46.154 0.00 0.00 33.14 2.57
35 36 5.952347 CCTCCTGTATGCACATATCCTAGTA 59.048 44.000 0.00 0.00 33.14 1.82
36 37 4.774726 CCTCCTGTATGCACATATCCTAGT 59.225 45.833 0.00 0.00 33.14 2.57
37 38 4.382470 GCCTCCTGTATGCACATATCCTAG 60.382 50.000 0.00 0.00 33.14 3.02
38 39 3.515502 GCCTCCTGTATGCACATATCCTA 59.484 47.826 0.00 0.00 33.14 2.94
39 40 2.304180 GCCTCCTGTATGCACATATCCT 59.696 50.000 0.00 0.00 33.14 3.24
40 41 2.038952 TGCCTCCTGTATGCACATATCC 59.961 50.000 0.00 0.00 33.14 2.59
41 42 3.407424 TGCCTCCTGTATGCACATATC 57.593 47.619 0.00 0.00 33.14 1.63
42 43 3.328637 TGATGCCTCCTGTATGCACATAT 59.671 43.478 0.00 0.00 37.92 1.78
43 44 2.705127 TGATGCCTCCTGTATGCACATA 59.295 45.455 0.00 0.00 37.92 2.29
44 45 1.491754 TGATGCCTCCTGTATGCACAT 59.508 47.619 0.00 0.00 37.92 3.21
45 46 0.911053 TGATGCCTCCTGTATGCACA 59.089 50.000 0.00 0.00 37.92 4.57
46 47 1.672881 GTTGATGCCTCCTGTATGCAC 59.327 52.381 0.00 0.00 37.92 4.57
47 48 1.743431 CGTTGATGCCTCCTGTATGCA 60.743 52.381 0.00 0.00 39.68 3.96
48 49 0.940126 CGTTGATGCCTCCTGTATGC 59.060 55.000 0.00 0.00 0.00 3.14
49 50 0.940126 GCGTTGATGCCTCCTGTATG 59.060 55.000 0.00 0.00 0.00 2.39
50 51 0.833287 AGCGTTGATGCCTCCTGTAT 59.167 50.000 0.00 0.00 34.65 2.29
51 52 0.108186 CAGCGTTGATGCCTCCTGTA 60.108 55.000 0.00 0.00 34.65 2.74
52 53 1.376424 CAGCGTTGATGCCTCCTGT 60.376 57.895 0.00 0.00 34.65 4.00
53 54 1.376424 ACAGCGTTGATGCCTCCTG 60.376 57.895 6.16 0.00 34.65 3.86
54 55 1.376424 CACAGCGTTGATGCCTCCT 60.376 57.895 6.16 0.00 34.65 3.69
55 56 1.364626 CTCACAGCGTTGATGCCTCC 61.365 60.000 6.16 0.00 34.65 4.30
56 57 1.364626 CCTCACAGCGTTGATGCCTC 61.365 60.000 6.16 0.00 34.65 4.70
57 58 1.376424 CCTCACAGCGTTGATGCCT 60.376 57.895 6.16 0.00 34.65 4.75
58 59 0.745845 ATCCTCACAGCGTTGATGCC 60.746 55.000 6.16 0.00 34.65 4.40
59 60 1.089920 AATCCTCACAGCGTTGATGC 58.910 50.000 6.16 0.00 0.00 3.91
60 61 2.743664 TCAAATCCTCACAGCGTTGATG 59.256 45.455 6.16 0.78 0.00 3.07
61 62 3.057969 TCAAATCCTCACAGCGTTGAT 57.942 42.857 6.16 0.00 0.00 2.57
62 63 2.542020 TCAAATCCTCACAGCGTTGA 57.458 45.000 6.16 0.00 0.00 3.18
63 64 3.624326 TTTCAAATCCTCACAGCGTTG 57.376 42.857 0.00 0.00 0.00 4.10
64 65 4.853924 ATTTTCAAATCCTCACAGCGTT 57.146 36.364 0.00 0.00 0.00 4.84
65 66 4.853924 AATTTTCAAATCCTCACAGCGT 57.146 36.364 0.00 0.00 0.00 5.07
66 67 5.942872 ACTAATTTTCAAATCCTCACAGCG 58.057 37.500 0.00 0.00 0.00 5.18
67 68 7.150783 AGACTAATTTTCAAATCCTCACAGC 57.849 36.000 0.00 0.00 0.00 4.40
69 70 9.793259 AGTAAGACTAATTTTCAAATCCTCACA 57.207 29.630 0.00 0.00 0.00 3.58
89 90 9.627123 CCATCATTTTGTCCCTAATAAGTAAGA 57.373 33.333 0.00 0.00 0.00 2.10
90 91 8.850156 CCCATCATTTTGTCCCTAATAAGTAAG 58.150 37.037 0.00 0.00 0.00 2.34
91 92 8.561769 TCCCATCATTTTGTCCCTAATAAGTAA 58.438 33.333 0.00 0.00 0.00 2.24
92 93 8.108378 TCCCATCATTTTGTCCCTAATAAGTA 57.892 34.615 0.00 0.00 0.00 2.24
93 94 6.980577 TCCCATCATTTTGTCCCTAATAAGT 58.019 36.000 0.00 0.00 0.00 2.24
94 95 9.759473 ATATCCCATCATTTTGTCCCTAATAAG 57.241 33.333 0.00 0.00 0.00 1.73
95 96 9.532494 CATATCCCATCATTTTGTCCCTAATAA 57.468 33.333 0.00 0.00 0.00 1.40
96 97 8.899765 TCATATCCCATCATTTTGTCCCTAATA 58.100 33.333 0.00 0.00 0.00 0.98
97 98 7.768643 TCATATCCCATCATTTTGTCCCTAAT 58.231 34.615 0.00 0.00 0.00 1.73
98 99 7.073598 TCTCATATCCCATCATTTTGTCCCTAA 59.926 37.037 0.00 0.00 0.00 2.69
99 100 6.562223 TCTCATATCCCATCATTTTGTCCCTA 59.438 38.462 0.00 0.00 0.00 3.53
100 101 5.373555 TCTCATATCCCATCATTTTGTCCCT 59.626 40.000 0.00 0.00 0.00 4.20
101 102 5.634118 TCTCATATCCCATCATTTTGTCCC 58.366 41.667 0.00 0.00 0.00 4.46
102 103 7.255730 CCTTTCTCATATCCCATCATTTTGTCC 60.256 40.741 0.00 0.00 0.00 4.02
103 104 7.286316 ACCTTTCTCATATCCCATCATTTTGTC 59.714 37.037 0.00 0.00 0.00 3.18
104 105 7.069085 CACCTTTCTCATATCCCATCATTTTGT 59.931 37.037 0.00 0.00 0.00 2.83
105 106 7.286087 TCACCTTTCTCATATCCCATCATTTTG 59.714 37.037 0.00 0.00 0.00 2.44
106 107 7.356680 TCACCTTTCTCATATCCCATCATTTT 58.643 34.615 0.00 0.00 0.00 1.82
107 108 6.914665 TCACCTTTCTCATATCCCATCATTT 58.085 36.000 0.00 0.00 0.00 2.32
108 109 6.466904 CCTCACCTTTCTCATATCCCATCATT 60.467 42.308 0.00 0.00 0.00 2.57
109 110 5.013913 CCTCACCTTTCTCATATCCCATCAT 59.986 44.000 0.00 0.00 0.00 2.45
110 111 4.349048 CCTCACCTTTCTCATATCCCATCA 59.651 45.833 0.00 0.00 0.00 3.07
111 112 4.349342 ACCTCACCTTTCTCATATCCCATC 59.651 45.833 0.00 0.00 0.00 3.51
112 113 4.103785 CACCTCACCTTTCTCATATCCCAT 59.896 45.833 0.00 0.00 0.00 4.00
113 114 3.455910 CACCTCACCTTTCTCATATCCCA 59.544 47.826 0.00 0.00 0.00 4.37
114 115 3.181450 CCACCTCACCTTTCTCATATCCC 60.181 52.174 0.00 0.00 0.00 3.85
115 116 3.711704 TCCACCTCACCTTTCTCATATCC 59.288 47.826 0.00 0.00 0.00 2.59
116 117 5.559148 ATCCACCTCACCTTTCTCATATC 57.441 43.478 0.00 0.00 0.00 1.63
117 118 6.042552 CAGTATCCACCTCACCTTTCTCATAT 59.957 42.308 0.00 0.00 0.00 1.78
118 119 5.363868 CAGTATCCACCTCACCTTTCTCATA 59.636 44.000 0.00 0.00 0.00 2.15
119 120 4.163078 CAGTATCCACCTCACCTTTCTCAT 59.837 45.833 0.00 0.00 0.00 2.90
120 121 3.515502 CAGTATCCACCTCACCTTTCTCA 59.484 47.826 0.00 0.00 0.00 3.27
121 122 3.515901 ACAGTATCCACCTCACCTTTCTC 59.484 47.826 0.00 0.00 0.00 2.87
122 123 3.521727 ACAGTATCCACCTCACCTTTCT 58.478 45.455 0.00 0.00 0.00 2.52
123 124 3.983044 ACAGTATCCACCTCACCTTTC 57.017 47.619 0.00 0.00 0.00 2.62
124 125 5.836024 TTTACAGTATCCACCTCACCTTT 57.164 39.130 0.00 0.00 0.00 3.11
125 126 5.309806 ACTTTTACAGTATCCACCTCACCTT 59.690 40.000 0.00 0.00 31.97 3.50
126 127 4.844655 ACTTTTACAGTATCCACCTCACCT 59.155 41.667 0.00 0.00 31.97 4.00
127 128 5.161943 ACTTTTACAGTATCCACCTCACC 57.838 43.478 0.00 0.00 31.97 4.02
128 129 8.611654 TTTAACTTTTACAGTATCCACCTCAC 57.388 34.615 0.00 0.00 32.94 3.51
129 130 9.802039 AATTTAACTTTTACAGTATCCACCTCA 57.198 29.630 0.00 0.00 32.94 3.86
144 145 9.309224 ACTGGTTAGGCATAGAATTTAACTTTT 57.691 29.630 0.00 0.00 0.00 2.27
145 146 8.879427 ACTGGTTAGGCATAGAATTTAACTTT 57.121 30.769 0.00 0.00 0.00 2.66
146 147 8.879427 AACTGGTTAGGCATAGAATTTAACTT 57.121 30.769 0.00 0.00 0.00 2.66
147 148 8.879427 AAACTGGTTAGGCATAGAATTTAACT 57.121 30.769 0.00 0.00 0.00 2.24
148 149 8.736244 TGAAACTGGTTAGGCATAGAATTTAAC 58.264 33.333 0.00 0.00 0.00 2.01
149 150 8.871629 TGAAACTGGTTAGGCATAGAATTTAA 57.128 30.769 0.00 0.00 0.00 1.52
150 151 7.556275 CCTGAAACTGGTTAGGCATAGAATTTA 59.444 37.037 0.00 0.00 0.00 1.40
151 152 6.378280 CCTGAAACTGGTTAGGCATAGAATTT 59.622 38.462 0.00 0.00 0.00 1.82
152 153 5.888161 CCTGAAACTGGTTAGGCATAGAATT 59.112 40.000 0.00 0.00 0.00 2.17
153 154 5.440610 CCTGAAACTGGTTAGGCATAGAAT 58.559 41.667 0.00 0.00 0.00 2.40
154 155 4.324254 CCCTGAAACTGGTTAGGCATAGAA 60.324 45.833 0.00 0.00 0.00 2.10
155 156 3.199946 CCCTGAAACTGGTTAGGCATAGA 59.800 47.826 0.00 0.00 0.00 1.98
156 157 3.545703 CCCTGAAACTGGTTAGGCATAG 58.454 50.000 0.00 0.00 0.00 2.23
157 158 2.241176 CCCCTGAAACTGGTTAGGCATA 59.759 50.000 0.00 0.00 0.00 3.14
158 159 1.005924 CCCCTGAAACTGGTTAGGCAT 59.994 52.381 0.00 0.00 0.00 4.40
159 160 0.404040 CCCCTGAAACTGGTTAGGCA 59.596 55.000 0.00 0.00 0.00 4.75
160 161 0.323451 CCCCCTGAAACTGGTTAGGC 60.323 60.000 0.00 0.00 0.00 3.93
161 162 3.978876 CCCCCTGAAACTGGTTAGG 57.021 57.895 0.00 0.00 0.00 2.69
184 185 8.779303 CCACGCCACTAAATATACATTTTATGA 58.221 33.333 0.00 0.00 35.88 2.15
185 186 8.020819 CCCACGCCACTAAATATACATTTTATG 58.979 37.037 0.00 0.00 35.88 1.90
186 187 7.175990 CCCCACGCCACTAAATATACATTTTAT 59.824 37.037 0.00 0.00 35.88 1.40
187 188 6.487331 CCCCACGCCACTAAATATACATTTTA 59.513 38.462 0.00 0.00 35.88 1.52
188 189 5.300792 CCCCACGCCACTAAATATACATTTT 59.699 40.000 0.00 0.00 35.88 1.82
189 190 4.825085 CCCCACGCCACTAAATATACATTT 59.175 41.667 0.00 0.00 38.02 2.32
190 191 4.141344 ACCCCACGCCACTAAATATACATT 60.141 41.667 0.00 0.00 0.00 2.71
191 192 3.393278 ACCCCACGCCACTAAATATACAT 59.607 43.478 0.00 0.00 0.00 2.29
192 193 2.773087 ACCCCACGCCACTAAATATACA 59.227 45.455 0.00 0.00 0.00 2.29
193 194 3.135994 CACCCCACGCCACTAAATATAC 58.864 50.000 0.00 0.00 0.00 1.47
194 195 3.039743 TCACCCCACGCCACTAAATATA 58.960 45.455 0.00 0.00 0.00 0.86
195 196 1.841277 TCACCCCACGCCACTAAATAT 59.159 47.619 0.00 0.00 0.00 1.28
196 197 1.065998 GTCACCCCACGCCACTAAATA 60.066 52.381 0.00 0.00 0.00 1.40
197 198 0.322187 GTCACCCCACGCCACTAAAT 60.322 55.000 0.00 0.00 0.00 1.40
198 199 1.071814 GTCACCCCACGCCACTAAA 59.928 57.895 0.00 0.00 0.00 1.85
199 200 1.823169 GAGTCACCCCACGCCACTAA 61.823 60.000 0.00 0.00 0.00 2.24
200 201 2.203728 AGTCACCCCACGCCACTA 60.204 61.111 0.00 0.00 0.00 2.74
201 202 3.626924 GAGTCACCCCACGCCACT 61.627 66.667 0.00 0.00 0.00 4.00
202 203 4.699522 GGAGTCACCCCACGCCAC 62.700 72.222 0.00 0.00 36.31 5.01
204 205 3.682292 GATGGAGTCACCCCACGCC 62.682 68.421 0.00 0.00 36.36 5.68
205 206 2.125106 GATGGAGTCACCCCACGC 60.125 66.667 0.00 0.00 36.36 5.34
206 207 0.391661 CTTGATGGAGTCACCCCACG 60.392 60.000 0.00 0.00 36.32 4.94
207 208 0.984230 TCTTGATGGAGTCACCCCAC 59.016 55.000 0.00 0.00 36.32 4.61
208 209 1.741028 TTCTTGATGGAGTCACCCCA 58.259 50.000 0.00 0.00 36.32 4.96
209 210 2.507471 AGATTCTTGATGGAGTCACCCC 59.493 50.000 0.00 0.00 36.32 4.95
210 211 3.054802 ACAGATTCTTGATGGAGTCACCC 60.055 47.826 0.00 0.00 36.32 4.61
211 212 4.213564 ACAGATTCTTGATGGAGTCACC 57.786 45.455 0.00 0.00 36.32 4.02
212 213 5.112686 GGTACAGATTCTTGATGGAGTCAC 58.887 45.833 0.00 0.00 36.32 3.67
213 214 4.777366 TGGTACAGATTCTTGATGGAGTCA 59.223 41.667 0.00 0.00 34.25 3.41
214 215 5.344743 TGGTACAGATTCTTGATGGAGTC 57.655 43.478 0.00 0.00 0.00 3.36
226 227 8.110618 TCGAATCGAACATGAATGGTACAGATT 61.111 37.037 1.57 6.11 35.06 2.40
227 228 6.682861 TCGAATCGAACATGAATGGTACAGAT 60.683 38.462 1.57 0.00 35.06 2.90
228 229 5.393678 TCGAATCGAACATGAATGGTACAGA 60.394 40.000 1.57 0.00 35.06 3.41
229 230 4.803613 TCGAATCGAACATGAATGGTACAG 59.196 41.667 1.57 0.00 35.06 2.74
230 231 4.749976 TCGAATCGAACATGAATGGTACA 58.250 39.130 1.57 0.00 35.95 2.90
231 232 5.333339 CCATCGAATCGAACATGAATGGTAC 60.333 44.000 10.12 0.00 39.99 3.34
232 233 4.749598 CCATCGAATCGAACATGAATGGTA 59.250 41.667 10.12 0.00 39.99 3.25
233 234 3.561310 CCATCGAATCGAACATGAATGGT 59.439 43.478 10.12 0.00 39.99 3.55
234 235 3.607775 GCCATCGAATCGAACATGAATGG 60.608 47.826 10.12 11.94 39.99 3.16
235 236 3.548587 GCCATCGAATCGAACATGAATG 58.451 45.455 10.12 1.00 39.99 2.67
236 237 2.549754 GGCCATCGAATCGAACATGAAT 59.450 45.455 10.12 0.00 39.99 2.57
237 238 1.939934 GGCCATCGAATCGAACATGAA 59.060 47.619 10.12 0.00 39.99 2.57
238 239 1.581934 GGCCATCGAATCGAACATGA 58.418 50.000 10.12 0.00 39.99 3.07
239 240 0.588252 GGGCCATCGAATCGAACATG 59.412 55.000 10.12 3.39 39.99 3.21
240 241 0.180171 TGGGCCATCGAATCGAACAT 59.820 50.000 10.12 0.00 39.99 2.71
241 242 0.461870 CTGGGCCATCGAATCGAACA 60.462 55.000 10.12 3.56 39.99 3.18
242 243 0.179084 TCTGGGCCATCGAATCGAAC 60.179 55.000 10.12 2.14 39.99 3.95
243 244 0.758734 ATCTGGGCCATCGAATCGAA 59.241 50.000 10.12 0.00 39.99 3.71
244 245 0.758734 AATCTGGGCCATCGAATCGA 59.241 50.000 6.72 8.12 41.13 3.59
245 246 2.289072 ACTAATCTGGGCCATCGAATCG 60.289 50.000 6.72 0.00 0.00 3.34
246 247 3.409026 ACTAATCTGGGCCATCGAATC 57.591 47.619 6.72 0.00 0.00 2.52
247 248 3.864789 AACTAATCTGGGCCATCGAAT 57.135 42.857 6.72 0.00 0.00 3.34
248 249 3.644966 AAACTAATCTGGGCCATCGAA 57.355 42.857 6.72 0.00 0.00 3.71
249 250 3.644966 AAAACTAATCTGGGCCATCGA 57.355 42.857 6.72 1.21 0.00 3.59
284 285 8.812329 GCAACTACAATAGAATCTAGACTTGTG 58.188 37.037 14.57 9.11 0.00 3.33
285 286 8.754080 AGCAACTACAATAGAATCTAGACTTGT 58.246 33.333 11.16 11.16 0.00 3.16
286 287 9.243637 GAGCAACTACAATAGAATCTAGACTTG 57.756 37.037 0.00 0.00 0.00 3.16
287 288 8.417884 GGAGCAACTACAATAGAATCTAGACTT 58.582 37.037 0.00 0.00 0.00 3.01
288 289 7.014808 GGGAGCAACTACAATAGAATCTAGACT 59.985 40.741 0.00 0.00 0.00 3.24
289 290 7.149307 GGGAGCAACTACAATAGAATCTAGAC 58.851 42.308 0.00 0.00 0.00 2.59
290 291 6.267928 GGGGAGCAACTACAATAGAATCTAGA 59.732 42.308 0.00 0.00 0.00 2.43
291 292 6.459923 GGGGAGCAACTACAATAGAATCTAG 58.540 44.000 0.00 0.00 0.00 2.43
292 293 5.307196 GGGGGAGCAACTACAATAGAATCTA 59.693 44.000 0.00 0.00 0.00 1.98
293 294 4.103311 GGGGGAGCAACTACAATAGAATCT 59.897 45.833 0.00 0.00 0.00 2.40
294 295 4.141482 TGGGGGAGCAACTACAATAGAATC 60.141 45.833 0.00 0.00 0.00 2.52
295 296 3.785887 TGGGGGAGCAACTACAATAGAAT 59.214 43.478 0.00 0.00 0.00 2.40
296 297 3.054655 GTGGGGGAGCAACTACAATAGAA 60.055 47.826 0.00 0.00 0.00 2.10
297 298 2.504175 GTGGGGGAGCAACTACAATAGA 59.496 50.000 0.00 0.00 0.00 1.98
298 299 2.421529 GGTGGGGGAGCAACTACAATAG 60.422 54.545 0.00 0.00 0.00 1.73
299 300 1.562475 GGTGGGGGAGCAACTACAATA 59.438 52.381 0.00 0.00 0.00 1.90
300 301 0.331616 GGTGGGGGAGCAACTACAAT 59.668 55.000 0.00 0.00 0.00 2.71
301 302 1.063070 TGGTGGGGGAGCAACTACAA 61.063 55.000 0.00 0.00 0.00 2.41
302 303 0.844661 ATGGTGGGGGAGCAACTACA 60.845 55.000 0.00 0.00 35.17 2.74
303 304 0.107165 GATGGTGGGGGAGCAACTAC 60.107 60.000 0.00 0.00 35.17 2.73
304 305 1.622607 CGATGGTGGGGGAGCAACTA 61.623 60.000 0.00 0.00 35.17 2.24
305 306 2.971598 CGATGGTGGGGGAGCAACT 61.972 63.158 0.00 0.00 35.17 3.16
306 307 2.438434 CGATGGTGGGGGAGCAAC 60.438 66.667 0.00 0.00 35.17 4.17
307 308 3.727258 CCGATGGTGGGGGAGCAA 61.727 66.667 0.00 0.00 35.17 3.91
308 309 4.731853 TCCGATGGTGGGGGAGCA 62.732 66.667 0.00 0.00 36.23 4.26
309 310 3.866582 CTCCGATGGTGGGGGAGC 61.867 72.222 0.00 0.00 40.76 4.70
313 314 3.164269 CCTCCTCCGATGGTGGGG 61.164 72.222 4.25 0.56 36.65 4.96
315 316 2.041922 TCCCTCCTCCGATGGTGG 60.042 66.667 7.49 7.49 39.69 4.61
316 317 1.075970 TCTCCCTCCTCCGATGGTG 60.076 63.158 0.00 0.00 0.00 4.17
317 318 1.075896 GTCTCCCTCCTCCGATGGT 60.076 63.158 0.00 0.00 0.00 3.55
318 319 1.075970 TGTCTCCCTCCTCCGATGG 60.076 63.158 0.00 0.00 0.00 3.51
319 320 0.684479 TGTGTCTCCCTCCTCCGATG 60.684 60.000 0.00 0.00 0.00 3.84
320 321 0.684805 GTGTGTCTCCCTCCTCCGAT 60.685 60.000 0.00 0.00 0.00 4.18
321 322 1.304217 GTGTGTCTCCCTCCTCCGA 60.304 63.158 0.00 0.00 0.00 4.55
322 323 2.701780 CGTGTGTCTCCCTCCTCCG 61.702 68.421 0.00 0.00 0.00 4.63
323 324 3.007973 GCGTGTGTCTCCCTCCTCC 62.008 68.421 0.00 0.00 0.00 4.30
324 325 2.574399 GCGTGTGTCTCCCTCCTC 59.426 66.667 0.00 0.00 0.00 3.71
325 326 2.997897 GGCGTGTGTCTCCCTCCT 60.998 66.667 0.00 0.00 0.00 3.69
326 327 4.436998 CGGCGTGTGTCTCCCTCC 62.437 72.222 0.00 0.00 0.00 4.30
329 330 4.760047 ATGCGGCGTGTGTCTCCC 62.760 66.667 9.37 0.00 0.00 4.30
435 466 2.590611 AGTAGGGTGGTAGAAGGATGGA 59.409 50.000 0.00 0.00 0.00 3.41
459 490 0.333312 GGAGGTGGTGGAGAGAGAGA 59.667 60.000 0.00 0.00 0.00 3.10
620 664 2.970639 CGAGGAAGGCGAGGACAA 59.029 61.111 0.00 0.00 0.00 3.18
693 737 1.172180 CCACTTTGGCGCAGAGGAAA 61.172 55.000 10.83 0.00 0.00 3.13
887 931 0.179124 GTCAGAGCCGAGGACATGTC 60.179 60.000 17.91 17.91 0.00 3.06
979 1038 0.739462 CTCGGCGCACCTATGAACAA 60.739 55.000 10.83 0.00 0.00 2.83
1016 1075 1.043116 CATCTCCAGGACGTGCCCTA 61.043 60.000 2.38 0.00 37.37 3.53
1022 1081 1.296715 GCAACCATCTCCAGGACGT 59.703 57.895 0.00 0.00 0.00 4.34
1069 1128 1.078143 GCCCGAACATTCCAGAGCT 60.078 57.895 0.00 0.00 0.00 4.09
1092 1151 3.417601 CATGAGACGGCATGCAGG 58.582 61.111 21.96 14.09 39.19 4.85
1113 1172 1.678627 GCAGTGATCTTCTCCTCGCTA 59.321 52.381 0.00 0.00 31.30 4.26
1134 1193 7.439381 ACGTCTTCTTCAAATAGTCCACTTTA 58.561 34.615 0.00 0.00 0.00 1.85
1146 1205 4.773013 ACCACCTAAACGTCTTCTTCAAA 58.227 39.130 0.00 0.00 0.00 2.69
1269 1328 2.529643 TAGGCCGGTTCCAACCCA 60.530 61.111 1.90 0.00 46.53 4.51
1438 1497 1.970640 GTGGGGGCAGATGAACTTTTT 59.029 47.619 0.00 0.00 0.00 1.94
1455 1514 3.365265 GGTGCGGCTTCCTTGTGG 61.365 66.667 0.00 0.00 0.00 4.17
1493 1552 2.918802 CCCCTTTGCAAGCAGCCA 60.919 61.111 0.00 0.00 44.83 4.75
1536 1595 3.620488 TCATAGCCCATTCTTGGTTCAC 58.380 45.455 0.00 0.00 41.91 3.18
1571 1630 4.142359 TGAAAACTTTGTTGCACCGTACAT 60.142 37.500 0.00 0.00 0.00 2.29
1599 1658 0.546598 AGGAATTACCAGCTTCCCGG 59.453 55.000 0.00 0.00 41.59 5.73
1816 2091 1.022735 CAGAATGGCATGCTCTCACC 58.977 55.000 18.92 0.00 0.00 4.02
1854 2133 7.254084 CGCCTAGGATGCATTAAATTTCAAAAC 60.254 37.037 14.75 0.00 0.00 2.43
1873 2153 1.718757 GCAAGCCAACATCGCCTAGG 61.719 60.000 3.67 3.67 0.00 3.02
1876 2156 2.282391 TGCAAGCCAACATCGCCT 60.282 55.556 0.00 0.00 0.00 5.52
1896 2177 2.262292 GCGCACACCAATGCCATT 59.738 55.556 0.30 0.00 42.99 3.16
1912 2193 1.134521 TGAACATCCCATAGTCACGGC 60.135 52.381 0.00 0.00 0.00 5.68
1921 2202 1.004745 GGGTGTGTCTGAACATCCCAT 59.995 52.381 13.26 0.00 44.35 4.00
2024 2306 2.832129 GACACAGGAATACTCACCCTCA 59.168 50.000 0.00 0.00 0.00 3.86
2053 2335 3.237746 TGGATGCCCTCAACAAAATCAA 58.762 40.909 0.00 0.00 0.00 2.57
2178 2462 2.539274 GCAAAACAAAGATTTCAGCGCA 59.461 40.909 11.47 0.00 0.00 6.09
2214 2499 5.700832 CCAGTTCTGCACTAGTTAATTGTCA 59.299 40.000 0.00 0.00 32.76 3.58
2225 2510 2.229792 CAAAAGGCCAGTTCTGCACTA 58.770 47.619 5.01 0.00 32.76 2.74
2226 2511 1.035139 CAAAAGGCCAGTTCTGCACT 58.965 50.000 5.01 0.00 35.35 4.40
2227 2512 0.746659 ACAAAAGGCCAGTTCTGCAC 59.253 50.000 5.01 0.00 0.00 4.57
2228 2513 0.746063 CACAAAAGGCCAGTTCTGCA 59.254 50.000 5.01 0.00 0.00 4.41
2229 2514 0.598419 GCACAAAAGGCCAGTTCTGC 60.598 55.000 5.01 4.06 0.00 4.26
2230 2515 3.575399 GCACAAAAGGCCAGTTCTG 57.425 52.632 5.01 0.00 0.00 3.02
2238 2523 1.142965 ACAAACCGGCACAAAAGGC 59.857 52.632 0.00 0.00 0.00 4.35
2239 2524 0.457851 TCACAAACCGGCACAAAAGG 59.542 50.000 0.00 0.00 0.00 3.11
2240 2525 2.192624 CTTCACAAACCGGCACAAAAG 58.807 47.619 0.00 0.00 0.00 2.27
2241 2526 1.134965 CCTTCACAAACCGGCACAAAA 60.135 47.619 0.00 0.00 0.00 2.44
2242 2527 0.457851 CCTTCACAAACCGGCACAAA 59.542 50.000 0.00 0.00 0.00 2.83
2243 2528 2.010582 GCCTTCACAAACCGGCACAA 62.011 55.000 0.00 0.00 42.06 3.33
2244 2529 2.485795 GCCTTCACAAACCGGCACA 61.486 57.895 0.00 0.00 42.06 4.57
2245 2530 2.335011 GCCTTCACAAACCGGCAC 59.665 61.111 0.00 0.00 42.06 5.01
2246 2531 2.909965 GGCCTTCACAAACCGGCA 60.910 61.111 0.00 0.00 44.23 5.69
2247 2532 1.744320 AAAGGCCTTCACAAACCGGC 61.744 55.000 20.79 0.00 41.75 6.13
2248 2533 0.750249 AAAAGGCCTTCACAAACCGG 59.250 50.000 20.79 0.00 0.00 5.28
2249 2534 1.136110 ACAAAAGGCCTTCACAAACCG 59.864 47.619 20.79 3.82 0.00 4.44
2250 2535 2.549926 CACAAAAGGCCTTCACAAACC 58.450 47.619 20.79 0.00 0.00 3.27
2251 2536 1.933181 GCACAAAAGGCCTTCACAAAC 59.067 47.619 20.79 3.45 0.00 2.93
2252 2537 2.307934 GCACAAAAGGCCTTCACAAA 57.692 45.000 20.79 0.00 0.00 2.83
2261 2546 2.050442 CGAACCGGCACAAAAGGC 60.050 61.111 0.00 0.00 0.00 4.35
2262 2547 1.008995 CACGAACCGGCACAAAAGG 60.009 57.895 0.00 0.00 0.00 3.11
2263 2548 0.378962 TTCACGAACCGGCACAAAAG 59.621 50.000 0.00 0.00 0.00 2.27
2264 2549 0.099082 GTTCACGAACCGGCACAAAA 59.901 50.000 0.00 0.00 35.36 2.44
2265 2550 1.722677 GTTCACGAACCGGCACAAA 59.277 52.632 0.00 0.00 35.36 2.83
2266 2551 3.412061 GTTCACGAACCGGCACAA 58.588 55.556 0.00 0.00 35.36 3.33
2275 2560 5.358492 ACTCTTTAGTGCCGGTTCACGAA 62.358 47.826 1.90 3.31 41.61 3.85
2276 2561 3.913344 ACTCTTTAGTGCCGGTTCACGA 61.913 50.000 1.90 0.00 41.61 4.35
2277 2562 1.068474 CTCTTTAGTGCCGGTTCACG 58.932 55.000 1.90 0.00 41.61 4.35
2278 2563 1.798813 CACTCTTTAGTGCCGGTTCAC 59.201 52.381 1.90 3.26 46.28 3.18
2279 2564 2.163818 CACTCTTTAGTGCCGGTTCA 57.836 50.000 1.90 0.00 46.28 3.18
2286 2571 8.959287 GACCTTTAGTCCCCACTCTTTAGTGC 62.959 50.000 0.00 0.00 44.38 4.40
2287 2572 5.569026 GACCTTTAGTCCCCACTCTTTAGTG 60.569 48.000 0.00 0.00 44.83 2.74
2288 2573 4.500452 ACCTTTAGTCCCCACTCTTTAGT 58.500 43.478 0.00 0.00 35.91 2.24
2289 2574 5.087391 GACCTTTAGTCCCCACTCTTTAG 57.913 47.826 0.00 0.00 39.84 1.85
2313 2598 0.176449 CGAACCGGTACTAAAGGGGG 59.824 60.000 8.00 0.00 0.00 5.40
2314 2599 0.897621 ACGAACCGGTACTAAAGGGG 59.102 55.000 8.00 0.00 0.00 4.79
2315 2600 1.545582 TGACGAACCGGTACTAAAGGG 59.454 52.381 8.00 0.00 0.00 3.95
2316 2601 2.489329 TCTGACGAACCGGTACTAAAGG 59.511 50.000 8.00 0.00 0.00 3.11
2317 2602 3.837213 TCTGACGAACCGGTACTAAAG 57.163 47.619 8.00 3.62 0.00 1.85
2318 2603 3.900941 GTTCTGACGAACCGGTACTAAA 58.099 45.455 8.00 0.00 42.93 1.85
2319 2604 3.559238 GTTCTGACGAACCGGTACTAA 57.441 47.619 8.00 0.00 42.93 2.24
2328 2613 1.725164 CTTTAGCCGGTTCTGACGAAC 59.275 52.381 1.90 0.00 46.93 3.95
2329 2614 1.342174 ACTTTAGCCGGTTCTGACGAA 59.658 47.619 1.90 0.00 0.00 3.85
2330 2615 0.963962 ACTTTAGCCGGTTCTGACGA 59.036 50.000 1.90 0.00 0.00 4.20
2331 2616 1.068474 CACTTTAGCCGGTTCTGACG 58.932 55.000 1.90 0.00 0.00 4.35
2332 2617 0.796927 GCACTTTAGCCGGTTCTGAC 59.203 55.000 1.90 0.00 0.00 3.51
2333 2618 0.321298 GGCACTTTAGCCGGTTCTGA 60.321 55.000 1.90 0.00 46.12 3.27
2334 2619 2.171635 GGCACTTTAGCCGGTTCTG 58.828 57.895 1.90 0.00 46.12 3.02
2335 2620 4.716003 GGCACTTTAGCCGGTTCT 57.284 55.556 1.90 0.00 46.12 3.01
2342 2627 1.574428 CACGTGGTGGCACTTTAGC 59.426 57.895 18.45 0.25 0.00 3.09
2366 2651 4.684134 ATGCAAACGGGCCTGGCT 62.684 61.111 19.68 0.00 0.00 4.75
2367 2652 4.440127 CATGCAAACGGGCCTGGC 62.440 66.667 18.00 11.05 0.00 4.85
2368 2653 1.656818 CTACATGCAAACGGGCCTGG 61.657 60.000 18.00 4.46 34.26 4.45
2369 2654 1.656818 CCTACATGCAAACGGGCCTG 61.657 60.000 11.02 11.02 35.80 4.85
2370 2655 1.378514 CCTACATGCAAACGGGCCT 60.379 57.895 0.84 0.00 0.00 5.19
2371 2656 2.414785 CCCTACATGCAAACGGGCC 61.415 63.158 0.00 0.00 0.00 5.80
2372 2657 3.196648 CCCTACATGCAAACGGGC 58.803 61.111 0.00 0.00 0.00 6.13
2373 2658 1.037030 ATGCCCTACATGCAAACGGG 61.037 55.000 8.82 8.82 42.92 5.28
2374 2659 0.817013 AATGCCCTACATGCAAACGG 59.183 50.000 0.00 0.00 42.92 4.44
2375 2660 2.682856 ACTAATGCCCTACATGCAAACG 59.317 45.455 0.00 0.00 42.92 3.60
2376 2661 4.036380 GGTACTAATGCCCTACATGCAAAC 59.964 45.833 0.00 0.00 42.92 2.93
2377 2662 4.204012 GGTACTAATGCCCTACATGCAAA 58.796 43.478 0.00 0.00 42.92 3.68
2378 2663 3.742954 CGGTACTAATGCCCTACATGCAA 60.743 47.826 0.00 0.00 42.92 4.08
2379 2664 2.224185 CGGTACTAATGCCCTACATGCA 60.224 50.000 0.00 0.00 43.97 3.96
2380 2665 2.413837 CGGTACTAATGCCCTACATGC 58.586 52.381 0.00 0.00 39.60 4.06
2381 2666 2.367567 ACCGGTACTAATGCCCTACATG 59.632 50.000 4.49 0.00 39.60 3.21
2382 2667 2.686119 ACCGGTACTAATGCCCTACAT 58.314 47.619 4.49 0.00 42.30 2.29
2383 2668 2.163810 ACCGGTACTAATGCCCTACA 57.836 50.000 4.49 0.00 0.00 2.74
2384 2669 2.484241 CCAACCGGTACTAATGCCCTAC 60.484 54.545 8.00 0.00 0.00 3.18
2385 2670 1.764134 CCAACCGGTACTAATGCCCTA 59.236 52.381 8.00 0.00 0.00 3.53
2386 2671 0.544697 CCAACCGGTACTAATGCCCT 59.455 55.000 8.00 0.00 0.00 5.19
2387 2672 0.253894 ACCAACCGGTACTAATGCCC 59.746 55.000 8.00 0.00 46.71 5.36
2388 2673 1.339342 ACACCAACCGGTACTAATGCC 60.339 52.381 8.00 0.00 46.94 4.40
2389 2674 2.103537 ACACCAACCGGTACTAATGC 57.896 50.000 8.00 0.00 46.94 3.56
2390 2675 3.934579 GGTAACACCAACCGGTACTAATG 59.065 47.826 8.00 0.73 46.94 1.90
2391 2676 4.206477 GGTAACACCAACCGGTACTAAT 57.794 45.455 8.00 0.00 46.94 1.73
2392 2677 3.676291 GGTAACACCAACCGGTACTAA 57.324 47.619 8.00 0.00 46.94 2.24
2411 2696 3.191791 CCCAAACATTTAGTACCGGTTGG 59.808 47.826 15.04 10.33 42.84 3.77
2412 2697 3.822167 ACCCAAACATTTAGTACCGGTTG 59.178 43.478 15.04 6.22 0.00 3.77
2413 2698 3.822167 CACCCAAACATTTAGTACCGGTT 59.178 43.478 15.04 0.00 0.00 4.44
2414 2699 3.181441 ACACCCAAACATTTAGTACCGGT 60.181 43.478 13.98 13.98 0.00 5.28
2415 2700 3.414269 ACACCCAAACATTTAGTACCGG 58.586 45.455 0.00 0.00 0.00 5.28
2416 2701 5.441709 AAACACCCAAACATTTAGTACCG 57.558 39.130 0.00 0.00 0.00 4.02
2494 2779 9.349713 ACTTTCACCTAATGATTTAACAACTCA 57.650 29.630 0.00 0.00 37.11 3.41
2497 2782 9.836076 GGTACTTTCACCTAATGATTTAACAAC 57.164 33.333 0.00 0.00 37.11 3.32
2498 2783 8.723311 CGGTACTTTCACCTAATGATTTAACAA 58.277 33.333 0.00 0.00 37.11 2.83
2499 2784 7.148373 GCGGTACTTTCACCTAATGATTTAACA 60.148 37.037 0.00 0.00 37.11 2.41
2500 2785 7.184779 GCGGTACTTTCACCTAATGATTTAAC 58.815 38.462 0.00 0.00 37.11 2.01
2501 2786 6.036300 CGCGGTACTTTCACCTAATGATTTAA 59.964 38.462 0.00 0.00 37.11 1.52
2502 2787 5.521010 CGCGGTACTTTCACCTAATGATTTA 59.479 40.000 0.00 0.00 37.11 1.40
2503 2788 4.331717 CGCGGTACTTTCACCTAATGATTT 59.668 41.667 0.00 0.00 37.11 2.17
2504 2789 3.869246 CGCGGTACTTTCACCTAATGATT 59.131 43.478 0.00 0.00 37.11 2.57
2505 2790 3.454375 CGCGGTACTTTCACCTAATGAT 58.546 45.455 0.00 0.00 37.11 2.45
2506 2791 2.417651 CCGCGGTACTTTCACCTAATGA 60.418 50.000 19.50 0.00 36.35 2.57
2507 2792 1.931172 CCGCGGTACTTTCACCTAATG 59.069 52.381 19.50 0.00 36.35 1.90
2508 2793 1.826720 TCCGCGGTACTTTCACCTAAT 59.173 47.619 27.15 0.00 36.35 1.73
2509 2794 1.255882 TCCGCGGTACTTTCACCTAA 58.744 50.000 27.15 0.00 36.35 2.69
2510 2795 1.477553 ATCCGCGGTACTTTCACCTA 58.522 50.000 27.15 0.03 36.35 3.08
2511 2796 0.611714 AATCCGCGGTACTTTCACCT 59.388 50.000 27.15 0.00 36.35 4.00
2512 2797 2.199236 CTAATCCGCGGTACTTTCACC 58.801 52.381 27.15 0.00 35.04 4.02
2513 2798 2.884827 ACTAATCCGCGGTACTTTCAC 58.115 47.619 27.15 0.00 0.00 3.18
2514 2799 3.598019 AACTAATCCGCGGTACTTTCA 57.402 42.857 27.15 3.40 0.00 2.69
2515 2800 3.000376 CGAAACTAATCCGCGGTACTTTC 60.000 47.826 27.15 21.28 0.00 2.62
2516 2801 2.925563 CGAAACTAATCCGCGGTACTTT 59.074 45.455 27.15 16.50 0.00 2.66
2517 2802 2.164219 TCGAAACTAATCCGCGGTACTT 59.836 45.455 27.15 18.80 0.00 2.24
2518 2803 1.745087 TCGAAACTAATCCGCGGTACT 59.255 47.619 27.15 13.20 0.00 2.73
2519 2804 1.848608 GTCGAAACTAATCCGCGGTAC 59.151 52.381 27.15 7.67 0.00 3.34
2520 2805 2.193306 GTCGAAACTAATCCGCGGTA 57.807 50.000 27.15 12.70 0.00 4.02
2521 2806 3.040409 GTCGAAACTAATCCGCGGT 57.960 52.632 27.15 9.68 0.00 5.68


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.