Multiple sequence alignment - TraesCS6B01G023000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G023000 chr6B 100.000 3167 0 0 1 3167 14310122 14313288 0.000000e+00 5849
1 TraesCS6B01G023000 chr6B 90.449 2073 173 17 913 2978 13934162 13932108 0.000000e+00 2708
2 TraesCS6B01G023000 chr6B 87.821 1322 131 21 882 2195 14323418 14324717 0.000000e+00 1522
3 TraesCS6B01G023000 chr6B 87.295 1220 141 11 962 2175 14303254 14304465 0.000000e+00 1382
4 TraesCS6B01G023000 chr6B 84.828 1338 178 18 863 2194 39310950 39312268 0.000000e+00 1323
5 TraesCS6B01G023000 chr6B 86.221 1212 151 13 972 2175 54422294 54421091 0.000000e+00 1299
6 TraesCS6B01G023000 chr6B 82.982 1469 199 26 732 2195 54403116 54401694 0.000000e+00 1280
7 TraesCS6B01G023000 chr6B 83.466 1252 178 25 963 2202 14455067 14453833 0.000000e+00 1138
8 TraesCS6B01G023000 chr6B 83.434 495 68 10 2458 2951 14398507 14398026 6.230000e-122 448
9 TraesCS6B01G023000 chr6B 89.247 93 10 0 2367 2459 717410548 717410456 2.000000e-22 117
10 TraesCS6B01G023000 chr6B 82.090 134 15 6 2887 3011 13826997 13826864 4.320000e-19 106
11 TraesCS6B01G023000 chr6A 88.331 1414 139 15 960 2365 8170448 8171843 0.000000e+00 1674
12 TraesCS6B01G023000 chr6A 86.290 620 69 10 2458 3075 8171844 8172449 0.000000e+00 660
13 TraesCS6B01G023000 chr6D 87.660 1410 145 15 966 2365 7885716 7887106 0.000000e+00 1613
14 TraesCS6B01G023000 chr6D 84.911 1405 178 23 960 2354 7961845 7963225 0.000000e+00 1389
15 TraesCS6B01G023000 chr6D 85.599 1236 155 14 944 2175 7678741 7679957 0.000000e+00 1275
16 TraesCS6B01G023000 chr6D 95.911 538 21 1 2089 2626 7414889 7414353 0.000000e+00 870
17 TraesCS6B01G023000 chr6D 85.390 616 74 10 2458 3071 7887107 7887708 2.680000e-175 625
18 TraesCS6B01G023000 chr6D 86.471 510 47 10 863 1372 24251821 24252308 9.990000e-150 540
19 TraesCS6B01G023000 chr4A 86.473 1242 151 14 939 2175 667379987 667381216 0.000000e+00 1347
20 TraesCS6B01G023000 chr4A 85.785 1210 160 9 956 2159 667425289 667426492 0.000000e+00 1271
21 TraesCS6B01G023000 chr3B 95.753 730 30 1 1 730 482003616 482004344 0.000000e+00 1175
22 TraesCS6B01G023000 chr3B 95.510 735 30 3 1 734 662806157 662805425 0.000000e+00 1171
23 TraesCS6B01G023000 chr3B 95.115 737 33 3 1 736 662804942 662804208 0.000000e+00 1158
24 TraesCS6B01G023000 chr3B 95.330 728 33 1 1 728 685058080 685057354 0.000000e+00 1155
25 TraesCS6B01G023000 chr3B 94.973 736 36 1 1 736 675569821 675569087 0.000000e+00 1153
26 TraesCS6B01G023000 chr3B 92.360 733 52 3 1 731 141739235 141738505 0.000000e+00 1040
27 TraesCS6B01G023000 chr3B 91.489 94 8 0 2367 2460 704578512 704578419 2.560000e-26 130
28 TraesCS6B01G023000 chr2B 95.068 730 34 2 1 730 583523579 583522852 0.000000e+00 1147
29 TraesCS6B01G023000 chr2B 90.426 94 9 0 2367 2460 717368619 717368526 1.190000e-24 124
30 TraesCS6B01G023000 chr7B 93.458 749 39 7 1 741 55837196 55836450 0.000000e+00 1103
31 TraesCS6B01G023000 chr7B 90.722 97 7 2 2365 2460 3177972 3177877 9.220000e-26 128
32 TraesCS6B01G023000 chr5D 91.020 735 59 6 1 731 404868615 404867884 0.000000e+00 985
33 TraesCS6B01G023000 chr1D 76.692 1197 245 32 986 2168 490417854 490419030 4.460000e-178 634
34 TraesCS6B01G023000 chr4D 75.763 1114 240 19 1063 2171 449974976 449973888 4.650000e-148 534
35 TraesCS6B01G023000 chr7A 93.182 88 6 0 2367 2454 573432706 573432793 2.560000e-26 130
36 TraesCS6B01G023000 chr1A 91.489 94 8 0 2367 2460 438296427 438296520 2.560000e-26 130
37 TraesCS6B01G023000 chr3A 89.247 93 10 0 2367 2459 102680828 102680736 2.000000e-22 117


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G023000 chr6B 14310122 14313288 3166 False 5849.0 5849 100.0000 1 3167 1 chr6B.!!$F2 3166
1 TraesCS6B01G023000 chr6B 13932108 13934162 2054 True 2708.0 2708 90.4490 913 2978 1 chr6B.!!$R2 2065
2 TraesCS6B01G023000 chr6B 14323418 14324717 1299 False 1522.0 1522 87.8210 882 2195 1 chr6B.!!$F3 1313
3 TraesCS6B01G023000 chr6B 14303254 14304465 1211 False 1382.0 1382 87.2950 962 2175 1 chr6B.!!$F1 1213
4 TraesCS6B01G023000 chr6B 39310950 39312268 1318 False 1323.0 1323 84.8280 863 2194 1 chr6B.!!$F4 1331
5 TraesCS6B01G023000 chr6B 54421091 54422294 1203 True 1299.0 1299 86.2210 972 2175 1 chr6B.!!$R6 1203
6 TraesCS6B01G023000 chr6B 54401694 54403116 1422 True 1280.0 1280 82.9820 732 2195 1 chr6B.!!$R5 1463
7 TraesCS6B01G023000 chr6B 14453833 14455067 1234 True 1138.0 1138 83.4660 963 2202 1 chr6B.!!$R4 1239
8 TraesCS6B01G023000 chr6A 8170448 8172449 2001 False 1167.0 1674 87.3105 960 3075 2 chr6A.!!$F1 2115
9 TraesCS6B01G023000 chr6D 7961845 7963225 1380 False 1389.0 1389 84.9110 960 2354 1 chr6D.!!$F2 1394
10 TraesCS6B01G023000 chr6D 7678741 7679957 1216 False 1275.0 1275 85.5990 944 2175 1 chr6D.!!$F1 1231
11 TraesCS6B01G023000 chr6D 7885716 7887708 1992 False 1119.0 1613 86.5250 966 3071 2 chr6D.!!$F4 2105
12 TraesCS6B01G023000 chr6D 7414353 7414889 536 True 870.0 870 95.9110 2089 2626 1 chr6D.!!$R1 537
13 TraesCS6B01G023000 chr4A 667379987 667381216 1229 False 1347.0 1347 86.4730 939 2175 1 chr4A.!!$F1 1236
14 TraesCS6B01G023000 chr4A 667425289 667426492 1203 False 1271.0 1271 85.7850 956 2159 1 chr4A.!!$F2 1203
15 TraesCS6B01G023000 chr3B 482003616 482004344 728 False 1175.0 1175 95.7530 1 730 1 chr3B.!!$F1 729
16 TraesCS6B01G023000 chr3B 662804208 662806157 1949 True 1164.5 1171 95.3125 1 736 2 chr3B.!!$R5 735
17 TraesCS6B01G023000 chr3B 685057354 685058080 726 True 1155.0 1155 95.3300 1 728 1 chr3B.!!$R3 727
18 TraesCS6B01G023000 chr3B 675569087 675569821 734 True 1153.0 1153 94.9730 1 736 1 chr3B.!!$R2 735
19 TraesCS6B01G023000 chr3B 141738505 141739235 730 True 1040.0 1040 92.3600 1 731 1 chr3B.!!$R1 730
20 TraesCS6B01G023000 chr2B 583522852 583523579 727 True 1147.0 1147 95.0680 1 730 1 chr2B.!!$R1 729
21 TraesCS6B01G023000 chr7B 55836450 55837196 746 True 1103.0 1103 93.4580 1 741 1 chr7B.!!$R2 740
22 TraesCS6B01G023000 chr5D 404867884 404868615 731 True 985.0 985 91.0200 1 731 1 chr5D.!!$R1 730
23 TraesCS6B01G023000 chr1D 490417854 490419030 1176 False 634.0 634 76.6920 986 2168 1 chr1D.!!$F1 1182
24 TraesCS6B01G023000 chr4D 449973888 449974976 1088 True 534.0 534 75.7630 1063 2171 1 chr4D.!!$R1 1108

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
899 2127 0.035343 TGTCCGTCCACCAAACAACA 60.035 50.0 0.0 0.0 0.0 3.33 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2862 4315 0.250945 TTGCTGGGCGATAACCAACA 60.251 50.0 0.0 0.0 37.59 3.33 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
61 63 2.552743 GGCTACGGAAAAAGCTTCAACT 59.447 45.455 0.00 0.00 38.80 3.16
106 1322 6.294286 GGATGACCAAGAAAATTTACAACCGA 60.294 38.462 0.00 0.00 35.97 4.69
189 1405 1.729881 GTGGAATCGAAGCCATGGC 59.270 57.895 30.12 30.12 42.33 4.40
210 1427 3.000825 GCCGAAAAACGAAAAGTTGCAAT 59.999 39.130 0.59 0.00 43.37 3.56
276 1494 0.596083 CTTATCTCAGCTGCGACCCG 60.596 60.000 8.90 0.00 0.00 5.28
332 1551 2.579410 AGATTTTTGCTACCACCGGT 57.421 45.000 0.00 0.00 40.16 5.28
395 1615 0.830648 GGTGTAGTCTGCCATGGCTA 59.169 55.000 35.53 21.85 42.51 3.93
490 1710 0.896019 GAGGGCAGCTAGATCGGCTA 60.896 60.000 14.12 0.00 38.03 3.93
601 1822 4.752101 CGAGAGAAAGAAGAGAAAAGGCAA 59.248 41.667 0.00 0.00 0.00 4.52
767 1995 4.552767 GCATAATAGATGTTTTCGCGTGCT 60.553 41.667 5.77 0.00 0.00 4.40
790 2018 8.421784 TGCTAGTAGTTATATTTGGGTTCTGAG 58.578 37.037 0.00 0.00 0.00 3.35
819 2047 1.234821 GCAACGTGTGGATGGAAAGA 58.765 50.000 0.00 0.00 0.00 2.52
893 2121 1.525077 GTTGCTGTCCGTCCACCAA 60.525 57.895 0.00 0.00 0.00 3.67
894 2122 1.098712 GTTGCTGTCCGTCCACCAAA 61.099 55.000 0.00 0.00 0.00 3.28
895 2123 1.098712 TTGCTGTCCGTCCACCAAAC 61.099 55.000 0.00 0.00 0.00 2.93
896 2124 1.525077 GCTGTCCGTCCACCAAACA 60.525 57.895 0.00 0.00 0.00 2.83
899 2127 0.035343 TGTCCGTCCACCAAACAACA 60.035 50.000 0.00 0.00 0.00 3.33
1508 2765 3.880846 GCTCCGGCCGCTCAAATG 61.881 66.667 22.85 3.88 0.00 2.32
1510 2767 4.408821 TCCGGCCGCTCAAATGCT 62.409 61.111 22.85 0.00 0.00 3.79
1559 2816 2.112297 GGTGGTCAAGCCCAACGA 59.888 61.111 0.00 0.00 35.92 3.85
1609 2866 1.016627 TCGTGATATTGCCAAGCTGC 58.983 50.000 0.00 0.00 0.00 5.25
1623 2880 2.042831 GCTGCTCATCCAAACGCCT 61.043 57.895 0.00 0.00 0.00 5.52
1741 2998 0.855349 GCAAGCCATCTCATACGTCG 59.145 55.000 0.00 0.00 0.00 5.12
1899 3156 1.794714 TCCTAATCTCTGAGGTGGGC 58.205 55.000 4.59 0.00 34.20 5.36
1920 3177 3.576356 CAGCCGGCCTACATTGCG 61.576 66.667 26.15 0.00 0.00 4.85
1992 3249 5.233050 CCGCTACTATGTTGTGAGATTTCTG 59.767 44.000 0.00 0.00 0.00 3.02
2168 3425 6.652481 CCGGCTAGATTCAGATTTACATGAAT 59.348 38.462 0.00 0.29 46.21 2.57
2203 3460 8.736244 GGCTATGAGAATTGGTAAACTTTGTAA 58.264 33.333 0.00 0.00 0.00 2.41
2222 3479 5.784177 TGTAAGGTGCAACAAAGTTTTCAA 58.216 33.333 3.64 0.00 39.98 2.69
2308 3565 3.068165 TCTGTTAGATGCTGGTATGGTCG 59.932 47.826 0.00 0.00 0.00 4.79
2374 3641 7.571025 TGTTAAGGTTATCATTAACTCCCTCC 58.429 38.462 17.32 0.00 45.26 4.30
2375 3642 4.957684 AGGTTATCATTAACTCCCTCCG 57.042 45.455 0.00 0.00 38.22 4.63
2376 3643 4.296056 AGGTTATCATTAACTCCCTCCGT 58.704 43.478 0.00 0.00 38.22 4.69
2377 3644 4.344390 AGGTTATCATTAACTCCCTCCGTC 59.656 45.833 0.00 0.00 38.22 4.79
2378 3645 4.502777 GGTTATCATTAACTCCCTCCGTCC 60.503 50.000 0.00 0.00 38.22 4.79
2379 3646 2.544844 TCATTAACTCCCTCCGTCCT 57.455 50.000 0.00 0.00 0.00 3.85
2380 3647 3.675348 TCATTAACTCCCTCCGTCCTA 57.325 47.619 0.00 0.00 0.00 2.94
2381 3648 4.194678 TCATTAACTCCCTCCGTCCTAT 57.805 45.455 0.00 0.00 0.00 2.57
2382 3649 5.329191 TCATTAACTCCCTCCGTCCTATA 57.671 43.478 0.00 0.00 0.00 1.31
2383 3650 5.708544 TCATTAACTCCCTCCGTCCTATAA 58.291 41.667 0.00 0.00 0.00 0.98
2384 3651 6.320518 TCATTAACTCCCTCCGTCCTATAAT 58.679 40.000 0.00 0.00 0.00 1.28
2385 3652 7.472741 TCATTAACTCCCTCCGTCCTATAATA 58.527 38.462 0.00 0.00 0.00 0.98
2386 3653 7.395489 TCATTAACTCCCTCCGTCCTATAATAC 59.605 40.741 0.00 0.00 0.00 1.89
2387 3654 4.736611 ACTCCCTCCGTCCTATAATACA 57.263 45.455 0.00 0.00 0.00 2.29
2388 3655 5.070823 ACTCCCTCCGTCCTATAATACAA 57.929 43.478 0.00 0.00 0.00 2.41
2389 3656 5.078256 ACTCCCTCCGTCCTATAATACAAG 58.922 45.833 0.00 0.00 0.00 3.16
2390 3657 5.163012 ACTCCCTCCGTCCTATAATACAAGA 60.163 44.000 0.00 0.00 0.00 3.02
2391 3658 5.900437 TCCCTCCGTCCTATAATACAAGAT 58.100 41.667 0.00 0.00 0.00 2.40
2392 3659 5.715279 TCCCTCCGTCCTATAATACAAGATG 59.285 44.000 0.00 0.00 0.00 2.90
2393 3660 5.411781 CCTCCGTCCTATAATACAAGATGC 58.588 45.833 0.00 0.00 0.00 3.91
2394 3661 5.186021 CCTCCGTCCTATAATACAAGATGCT 59.814 44.000 0.00 0.00 0.00 3.79
2395 3662 6.377429 CCTCCGTCCTATAATACAAGATGCTA 59.623 42.308 0.00 0.00 0.00 3.49
2396 3663 7.068839 CCTCCGTCCTATAATACAAGATGCTAT 59.931 40.741 0.00 0.00 0.00 2.97
2397 3664 8.362464 TCCGTCCTATAATACAAGATGCTATT 57.638 34.615 0.00 0.00 0.00 1.73
2398 3665 9.470399 TCCGTCCTATAATACAAGATGCTATTA 57.530 33.333 0.00 0.00 0.00 0.98
2399 3666 9.517609 CCGTCCTATAATACAAGATGCTATTAC 57.482 37.037 0.00 0.00 0.00 1.89
2407 3674 5.545658 ACAAGATGCTATTACAACCAACG 57.454 39.130 0.00 0.00 0.00 4.10
2408 3675 5.001232 ACAAGATGCTATTACAACCAACGT 58.999 37.500 0.00 0.00 0.00 3.99
2409 3676 6.167685 ACAAGATGCTATTACAACCAACGTA 58.832 36.000 0.00 0.00 0.00 3.57
2410 3677 6.091713 ACAAGATGCTATTACAACCAACGTAC 59.908 38.462 0.00 0.00 0.00 3.67
2411 3678 5.974108 AGATGCTATTACAACCAACGTACT 58.026 37.500 0.00 0.00 0.00 2.73
2412 3679 6.040878 AGATGCTATTACAACCAACGTACTC 58.959 40.000 0.00 0.00 0.00 2.59
2413 3680 5.136816 TGCTATTACAACCAACGTACTCA 57.863 39.130 0.00 0.00 0.00 3.41
2414 3681 5.726397 TGCTATTACAACCAACGTACTCAT 58.274 37.500 0.00 0.00 0.00 2.90
2415 3682 6.865411 TGCTATTACAACCAACGTACTCATA 58.135 36.000 0.00 0.00 0.00 2.15
2416 3683 7.494211 TGCTATTACAACCAACGTACTCATAT 58.506 34.615 0.00 0.00 0.00 1.78
2417 3684 8.631797 TGCTATTACAACCAACGTACTCATATA 58.368 33.333 0.00 0.00 0.00 0.86
2418 3685 9.635520 GCTATTACAACCAACGTACTCATATAT 57.364 33.333 0.00 0.00 0.00 0.86
2423 3690 8.958119 ACAACCAACGTACTCATATATTGATT 57.042 30.769 0.00 0.00 32.72 2.57
2424 3691 8.826710 ACAACCAACGTACTCATATATTGATTG 58.173 33.333 0.00 0.00 32.72 2.67
2425 3692 8.826710 CAACCAACGTACTCATATATTGATTGT 58.173 33.333 0.00 0.00 32.72 2.71
2453 3720 6.546428 ACATCTTATATTATGGGACGGAGG 57.454 41.667 0.00 0.00 0.00 4.30
2454 3721 6.261435 ACATCTTATATTATGGGACGGAGGA 58.739 40.000 0.00 0.00 0.00 3.71
2455 3722 6.729100 ACATCTTATATTATGGGACGGAGGAA 59.271 38.462 0.00 0.00 0.00 3.36
2456 3723 6.852420 TCTTATATTATGGGACGGAGGAAG 57.148 41.667 0.00 0.00 0.00 3.46
2485 3936 3.960102 AGAAGAAACCATGCCTTTGTTGA 59.040 39.130 2.40 0.00 0.00 3.18
2626 4077 1.530419 TTTGGCTTGCACCGATGGT 60.530 52.632 0.00 0.00 35.62 3.55
2759 4210 1.191489 TGACTGATGCCGAGGGTGAA 61.191 55.000 0.00 0.00 0.00 3.18
2800 4251 4.002982 TCTGATTTTGTTGAGGATGTCCG 58.997 43.478 0.00 0.00 42.08 4.79
2814 4265 0.824109 TGTCCGAGGAATCGCTTCAT 59.176 50.000 0.92 0.00 32.70 2.57
2862 4315 1.080638 TGGGGTTGGAACAGGCTTAT 58.919 50.000 0.00 0.00 42.39 1.73
2863 4316 1.272425 TGGGGTTGGAACAGGCTTATG 60.272 52.381 0.00 0.00 42.39 1.90
2867 4320 2.231235 GGTTGGAACAGGCTTATGTTGG 59.769 50.000 7.13 0.00 43.32 3.77
2941 4394 7.023197 TGGTTCTGCTGTAAAGTTTCTTAAC 57.977 36.000 0.00 0.00 34.36 2.01
2993 4446 3.453424 CACAAAGGTTTTACTTGGCACC 58.547 45.455 0.00 0.00 0.00 5.01
2994 4447 3.132111 CACAAAGGTTTTACTTGGCACCT 59.868 43.478 0.00 0.00 41.71 4.00
3025 4478 5.232202 GGCAAGCTTTGTTTTAGTGTTCTTC 59.768 40.000 0.00 0.00 0.00 2.87
3029 4482 5.067805 AGCTTTGTTTTAGTGTTCTTCCCTG 59.932 40.000 0.00 0.00 0.00 4.45
3040 4493 4.580580 GTGTTCTTCCCTGACAAGATGTTT 59.419 41.667 0.00 0.00 29.89 2.83
3044 4497 5.935945 TCTTCCCTGACAAGATGTTTGTTA 58.064 37.500 0.00 0.00 31.96 2.41
3047 4500 6.126863 TCCCTGACAAGATGTTTGTTATCT 57.873 37.500 0.00 0.00 36.49 1.98
3067 4520 1.066454 TGGTATGGTATGTCTGTCGCG 59.934 52.381 0.00 0.00 0.00 5.87
3071 4524 1.153823 GGTATGTCTGTCGCGTGCT 60.154 57.895 5.77 0.00 0.00 4.40
3075 4528 0.243907 ATGTCTGTCGCGTGCTAGTT 59.756 50.000 5.77 0.00 0.00 2.24
3076 4529 0.876399 TGTCTGTCGCGTGCTAGTTA 59.124 50.000 5.77 0.00 0.00 2.24
3077 4530 1.135774 TGTCTGTCGCGTGCTAGTTAG 60.136 52.381 5.77 0.00 0.00 2.34
3078 4531 0.450583 TCTGTCGCGTGCTAGTTAGG 59.549 55.000 5.77 0.00 0.00 2.69
3079 4532 0.170561 CTGTCGCGTGCTAGTTAGGT 59.829 55.000 5.77 0.00 0.00 3.08
3080 4533 0.109458 TGTCGCGTGCTAGTTAGGTG 60.109 55.000 5.77 0.00 0.00 4.00
3081 4534 0.169672 GTCGCGTGCTAGTTAGGTGA 59.830 55.000 5.77 0.00 0.00 4.02
3082 4535 1.100510 TCGCGTGCTAGTTAGGTGAT 58.899 50.000 5.77 0.00 0.00 3.06
3083 4536 1.475280 TCGCGTGCTAGTTAGGTGATT 59.525 47.619 5.77 0.00 0.00 2.57
3084 4537 1.588404 CGCGTGCTAGTTAGGTGATTG 59.412 52.381 0.00 0.00 0.00 2.67
3085 4538 1.327764 GCGTGCTAGTTAGGTGATTGC 59.672 52.381 0.00 0.00 0.00 3.56
3086 4539 2.893637 CGTGCTAGTTAGGTGATTGCT 58.106 47.619 0.00 0.00 0.00 3.91
3087 4540 3.737047 GCGTGCTAGTTAGGTGATTGCTA 60.737 47.826 0.00 0.00 0.00 3.49
3088 4541 4.430007 CGTGCTAGTTAGGTGATTGCTAA 58.570 43.478 0.00 0.00 0.00 3.09
3089 4542 4.267928 CGTGCTAGTTAGGTGATTGCTAAC 59.732 45.833 0.00 0.00 34.74 2.34
3090 4543 5.175859 GTGCTAGTTAGGTGATTGCTAACA 58.824 41.667 0.00 0.00 36.38 2.41
3091 4544 5.063564 GTGCTAGTTAGGTGATTGCTAACAC 59.936 44.000 0.00 0.00 36.38 3.32
3092 4545 5.046591 TGCTAGTTAGGTGATTGCTAACACT 60.047 40.000 8.30 0.00 36.38 3.55
3093 4546 5.875359 GCTAGTTAGGTGATTGCTAACACTT 59.125 40.000 8.30 3.75 36.38 3.16
3094 4547 6.183360 GCTAGTTAGGTGATTGCTAACACTTG 60.183 42.308 8.30 0.00 36.38 3.16
3095 4548 5.865085 AGTTAGGTGATTGCTAACACTTGA 58.135 37.500 8.30 0.00 36.38 3.02
3096 4549 6.476378 AGTTAGGTGATTGCTAACACTTGAT 58.524 36.000 8.30 0.00 36.38 2.57
3097 4550 6.372659 AGTTAGGTGATTGCTAACACTTGATG 59.627 38.462 8.30 0.00 36.38 3.07
3098 4551 4.910195 AGGTGATTGCTAACACTTGATGA 58.090 39.130 8.30 0.00 37.22 2.92
3099 4552 5.316167 AGGTGATTGCTAACACTTGATGAA 58.684 37.500 8.30 0.00 37.22 2.57
3100 4553 5.413833 AGGTGATTGCTAACACTTGATGAAG 59.586 40.000 8.30 0.00 37.22 3.02
3101 4554 5.091431 GTGATTGCTAACACTTGATGAAGC 58.909 41.667 1.46 0.00 39.68 3.86
3102 4555 5.005740 TGATTGCTAACACTTGATGAAGCT 58.994 37.500 0.00 0.00 39.83 3.74
3103 4556 6.092670 GTGATTGCTAACACTTGATGAAGCTA 59.907 38.462 1.46 0.00 39.83 3.32
3104 4557 6.314648 TGATTGCTAACACTTGATGAAGCTAG 59.685 38.462 0.00 0.00 39.83 3.42
3105 4558 5.152623 TGCTAACACTTGATGAAGCTAGT 57.847 39.130 0.00 0.00 39.83 2.57
3106 4559 5.171476 TGCTAACACTTGATGAAGCTAGTC 58.829 41.667 0.00 0.00 39.83 2.59
3107 4560 4.266502 GCTAACACTTGATGAAGCTAGTCG 59.733 45.833 0.00 0.00 37.66 4.18
3108 4561 3.944055 ACACTTGATGAAGCTAGTCGT 57.056 42.857 0.00 0.00 31.68 4.34
3109 4562 4.258702 ACACTTGATGAAGCTAGTCGTT 57.741 40.909 0.00 0.00 31.68 3.85
3110 4563 5.386958 ACACTTGATGAAGCTAGTCGTTA 57.613 39.130 0.00 0.00 31.68 3.18
3111 4564 5.403246 ACACTTGATGAAGCTAGTCGTTAG 58.597 41.667 0.00 0.00 31.68 2.34
3112 4565 5.183331 ACACTTGATGAAGCTAGTCGTTAGA 59.817 40.000 0.00 0.00 31.68 2.10
3113 4566 6.127591 ACACTTGATGAAGCTAGTCGTTAGAT 60.128 38.462 0.00 0.00 31.68 1.98
3114 4567 6.416455 CACTTGATGAAGCTAGTCGTTAGATC 59.584 42.308 0.00 0.00 31.68 2.75
3115 4568 5.440234 TGATGAAGCTAGTCGTTAGATCC 57.560 43.478 0.00 0.00 0.00 3.36
3116 4569 4.887655 TGATGAAGCTAGTCGTTAGATCCA 59.112 41.667 0.00 0.00 0.00 3.41
3117 4570 4.634184 TGAAGCTAGTCGTTAGATCCAC 57.366 45.455 0.00 0.00 0.00 4.02
3118 4571 3.064958 TGAAGCTAGTCGTTAGATCCACG 59.935 47.826 8.44 8.44 39.08 4.94
3119 4572 2.915349 AGCTAGTCGTTAGATCCACGA 58.085 47.619 12.52 12.52 44.25 4.35
3125 4578 3.984508 TCGTTAGATCCACGAATCCTC 57.015 47.619 13.84 0.00 43.52 3.71
3126 4579 3.284617 TCGTTAGATCCACGAATCCTCA 58.715 45.455 13.84 0.00 43.52 3.86
3127 4580 3.889538 TCGTTAGATCCACGAATCCTCAT 59.110 43.478 13.84 0.00 43.52 2.90
3128 4581 5.067954 TCGTTAGATCCACGAATCCTCATA 58.932 41.667 13.84 0.00 43.52 2.15
3129 4582 5.710567 TCGTTAGATCCACGAATCCTCATAT 59.289 40.000 13.84 0.00 43.52 1.78
3130 4583 6.208797 TCGTTAGATCCACGAATCCTCATATT 59.791 38.462 13.84 0.00 43.52 1.28
3131 4584 6.868864 CGTTAGATCCACGAATCCTCATATTT 59.131 38.462 8.99 0.00 40.20 1.40
3132 4585 7.062371 CGTTAGATCCACGAATCCTCATATTTC 59.938 40.741 8.99 0.00 40.20 2.17
3133 4586 5.799213 AGATCCACGAATCCTCATATTTCC 58.201 41.667 0.00 0.00 0.00 3.13
3134 4587 5.307976 AGATCCACGAATCCTCATATTTCCA 59.692 40.000 0.00 0.00 0.00 3.53
3135 4588 5.567037 TCCACGAATCCTCATATTTCCAT 57.433 39.130 0.00 0.00 0.00 3.41
3136 4589 5.308014 TCCACGAATCCTCATATTTCCATG 58.692 41.667 0.00 0.00 0.00 3.66
3137 4590 5.065914 CCACGAATCCTCATATTTCCATGT 58.934 41.667 0.00 0.00 0.00 3.21
3138 4591 5.180117 CCACGAATCCTCATATTTCCATGTC 59.820 44.000 0.00 0.00 0.00 3.06
3139 4592 5.759763 CACGAATCCTCATATTTCCATGTCA 59.240 40.000 0.00 0.00 0.00 3.58
3140 4593 6.429078 CACGAATCCTCATATTTCCATGTCAT 59.571 38.462 0.00 0.00 0.00 3.06
3141 4594 7.000472 ACGAATCCTCATATTTCCATGTCATT 59.000 34.615 0.00 0.00 0.00 2.57
3142 4595 8.156820 ACGAATCCTCATATTTCCATGTCATTA 58.843 33.333 0.00 0.00 0.00 1.90
3143 4596 9.170734 CGAATCCTCATATTTCCATGTCATTAT 57.829 33.333 0.00 0.00 0.00 1.28
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
61 63 3.154710 CCATGGCTCCAGTCGTATACTA 58.845 50.000 0.00 0.00 35.76 1.82
96 1312 5.298276 AGCTTTTTCTGTCATCGGTTGTAAA 59.702 36.000 0.00 0.00 0.00 2.01
106 1322 5.064452 CGCTAGATGAAGCTTTTTCTGTCAT 59.936 40.000 17.69 8.13 40.49 3.06
189 1405 4.602957 CGATTGCAACTTTTCGTTTTTCGG 60.603 41.667 0.00 0.00 40.32 4.30
210 1427 6.128849 GCGGTTGTAACTTTTATAACTGTCGA 60.129 38.462 12.97 0.00 31.88 4.20
255 1472 1.269517 GGGTCGCAGCTGAGATAAGAG 60.270 57.143 23.33 0.55 0.00 2.85
276 1494 2.709475 GGCATCAACGTCATCGCC 59.291 61.111 3.63 3.63 41.18 5.54
286 1505 1.738432 TGCAGCAAAACGGCATCAA 59.262 47.368 0.00 0.00 45.00 2.57
332 1551 4.200874 ACCGGTTGTAACAAATTCACTCA 58.799 39.130 0.00 0.00 0.00 3.41
395 1615 2.667536 CACGCTGGAGCTGCAACT 60.668 61.111 9.92 0.00 39.32 3.16
463 1683 2.010582 CTAGCTGCCCTCGACCAGAC 62.011 65.000 0.00 0.47 0.00 3.51
490 1710 2.173669 CGCCGCCGTCATGAGAATT 61.174 57.895 0.00 0.00 0.00 2.17
547 1767 2.564553 CTTCTCTCTCCCCGTTGCCG 62.565 65.000 0.00 0.00 0.00 5.69
601 1822 0.534412 CATGTGCGTCTTCTCCCTCT 59.466 55.000 0.00 0.00 0.00 3.69
628 1854 0.102481 CGACACGTAGGATTGGAGGG 59.898 60.000 0.00 0.00 0.00 4.30
767 1995 8.069356 TCCCTCAGAACCCAAATATAACTACTA 58.931 37.037 0.00 0.00 0.00 1.82
790 2018 1.227853 ACACGTTGCCAAGAGTCCC 60.228 57.895 0.00 0.00 0.00 4.46
795 2023 0.888736 CCATCCACACGTTGCCAAGA 60.889 55.000 0.00 0.00 0.00 3.02
805 2033 1.635663 CGGCGTCTTTCCATCCACAC 61.636 60.000 0.00 0.00 0.00 3.82
834 2062 1.231958 TTGATCCGTGCCGTCCAAAC 61.232 55.000 0.00 0.00 0.00 2.93
843 2071 2.109126 GGGCTGAGTTGATCCGTGC 61.109 63.158 0.00 0.00 0.00 5.34
844 2072 0.742281 CTGGGCTGAGTTGATCCGTG 60.742 60.000 0.00 0.00 0.00 4.94
893 2121 1.339247 TGTGTGTCTCCGGTTGTTGTT 60.339 47.619 0.00 0.00 0.00 2.83
894 2122 0.250793 TGTGTGTCTCCGGTTGTTGT 59.749 50.000 0.00 0.00 0.00 3.32
895 2123 0.655733 GTGTGTGTCTCCGGTTGTTG 59.344 55.000 0.00 0.00 0.00 3.33
896 2124 0.808453 CGTGTGTGTCTCCGGTTGTT 60.808 55.000 0.00 0.00 0.00 2.83
899 2127 2.279918 GCGTGTGTGTCTCCGGTT 60.280 61.111 0.00 0.00 0.00 4.44
934 2162 1.153025 GGCGGTGGGGAATTCCTAC 60.153 63.158 23.63 20.58 45.23 3.18
935 2163 2.380285 GGGCGGTGGGGAATTCCTA 61.380 63.158 23.63 10.82 35.95 2.94
936 2164 3.739613 GGGCGGTGGGGAATTCCT 61.740 66.667 23.63 0.00 35.95 3.36
1202 2457 1.599576 GACTTGAGGTGGGAGAGCC 59.400 63.158 0.00 0.00 0.00 4.70
1417 2672 1.878102 GCATCTATGGCGGAATTCGGT 60.878 52.381 13.81 0.00 39.69 4.69
1609 2866 2.548920 GGATCCTAGGCGTTTGGATGAG 60.549 54.545 15.31 0.00 40.83 2.90
1623 2880 0.539986 GTTTGGCGGTGAGGATCCTA 59.460 55.000 16.16 0.06 0.00 2.94
1725 2982 1.364171 GCCGACGTATGAGATGGCT 59.636 57.895 0.00 0.00 39.38 4.75
1738 2995 1.586564 CGATCTTGTCCTCGCCGAC 60.587 63.158 0.00 0.00 0.00 4.79
1899 3156 1.750399 AATGTAGGCCGGCTGCAAG 60.750 57.895 28.56 0.00 43.89 4.01
1992 3249 5.180367 GCTCTAGCAATCCATTTTCCTTC 57.820 43.478 0.00 0.00 41.59 3.46
2168 3425 5.074804 CCAATTCTCATAGCCCATTCATGA 58.925 41.667 0.00 0.00 0.00 3.07
2171 3428 4.524802 ACCAATTCTCATAGCCCATTCA 57.475 40.909 0.00 0.00 0.00 2.57
2203 3460 5.704978 ACAAATTGAAAACTTTGTTGCACCT 59.295 32.000 0.00 0.00 41.51 4.00
2222 3479 6.041979 ACAGGAATTACCAGCTTTCAACAAAT 59.958 34.615 0.00 0.00 42.04 2.32
2308 3565 5.927030 TCAGTTTCATCAATCGTTAGCAAC 58.073 37.500 0.00 0.00 0.00 4.17
2355 3622 4.502777 GGACGGAGGGAGTTAATGATAACC 60.503 50.000 0.00 0.00 41.98 2.85
2365 3632 5.070823 TGTATTATAGGACGGAGGGAGTT 57.929 43.478 0.00 0.00 0.00 3.01
2366 3633 4.736611 TGTATTATAGGACGGAGGGAGT 57.263 45.455 0.00 0.00 0.00 3.85
2367 3634 5.322754 TCTTGTATTATAGGACGGAGGGAG 58.677 45.833 0.00 0.00 0.00 4.30
2368 3635 5.329191 TCTTGTATTATAGGACGGAGGGA 57.671 43.478 0.00 0.00 0.00 4.20
2369 3636 5.624738 GCATCTTGTATTATAGGACGGAGGG 60.625 48.000 0.00 0.00 0.00 4.30
2370 3637 5.186021 AGCATCTTGTATTATAGGACGGAGG 59.814 44.000 0.00 0.00 0.00 4.30
2371 3638 6.274157 AGCATCTTGTATTATAGGACGGAG 57.726 41.667 0.00 0.00 0.00 4.63
2372 3639 7.956328 ATAGCATCTTGTATTATAGGACGGA 57.044 36.000 0.00 0.00 0.00 4.69
2373 3640 9.517609 GTAATAGCATCTTGTATTATAGGACGG 57.482 37.037 0.00 0.00 0.00 4.79
2381 3648 8.822855 CGTTGGTTGTAATAGCATCTTGTATTA 58.177 33.333 0.00 0.00 0.00 0.98
2382 3649 7.335924 ACGTTGGTTGTAATAGCATCTTGTATT 59.664 33.333 0.00 0.00 0.00 1.89
2383 3650 6.821665 ACGTTGGTTGTAATAGCATCTTGTAT 59.178 34.615 0.00 0.00 0.00 2.29
2384 3651 6.167685 ACGTTGGTTGTAATAGCATCTTGTA 58.832 36.000 0.00 0.00 0.00 2.41
2385 3652 5.001232 ACGTTGGTTGTAATAGCATCTTGT 58.999 37.500 0.00 0.00 0.00 3.16
2386 3653 5.545658 ACGTTGGTTGTAATAGCATCTTG 57.454 39.130 0.00 0.00 0.00 3.02
2387 3654 6.403878 AGTACGTTGGTTGTAATAGCATCTT 58.596 36.000 0.00 0.00 0.00 2.40
2388 3655 5.974108 AGTACGTTGGTTGTAATAGCATCT 58.026 37.500 0.00 0.00 0.00 2.90
2389 3656 5.808540 TGAGTACGTTGGTTGTAATAGCATC 59.191 40.000 0.00 0.00 0.00 3.91
2390 3657 5.726397 TGAGTACGTTGGTTGTAATAGCAT 58.274 37.500 0.00 0.00 0.00 3.79
2391 3658 5.136816 TGAGTACGTTGGTTGTAATAGCA 57.863 39.130 0.00 0.00 0.00 3.49
2392 3659 7.941795 ATATGAGTACGTTGGTTGTAATAGC 57.058 36.000 0.00 0.00 0.00 2.97
2398 3665 8.826710 CAATCAATATATGAGTACGTTGGTTGT 58.173 33.333 0.00 0.00 42.53 3.32
2399 3666 8.826710 ACAATCAATATATGAGTACGTTGGTTG 58.173 33.333 0.00 7.20 42.53 3.77
2400 3667 8.958119 ACAATCAATATATGAGTACGTTGGTT 57.042 30.769 0.00 0.00 42.53 3.67
2427 3694 8.705594 CCTCCGTCCCATAATATAAGATGTTAT 58.294 37.037 0.29 0.29 33.25 1.89
2428 3695 7.897030 TCCTCCGTCCCATAATATAAGATGTTA 59.103 37.037 0.00 0.00 0.00 2.41
2429 3696 6.729100 TCCTCCGTCCCATAATATAAGATGTT 59.271 38.462 0.00 0.00 0.00 2.71
2430 3697 6.261435 TCCTCCGTCCCATAATATAAGATGT 58.739 40.000 0.00 0.00 0.00 3.06
2431 3698 6.791867 TCCTCCGTCCCATAATATAAGATG 57.208 41.667 0.00 0.00 0.00 2.90
2432 3699 6.960542 ACTTCCTCCGTCCCATAATATAAGAT 59.039 38.462 0.00 0.00 0.00 2.40
2433 3700 6.320518 ACTTCCTCCGTCCCATAATATAAGA 58.679 40.000 0.00 0.00 0.00 2.10
2434 3701 6.607004 ACTTCCTCCGTCCCATAATATAAG 57.393 41.667 0.00 0.00 0.00 1.73
2435 3702 7.243824 ACTACTTCCTCCGTCCCATAATATAA 58.756 38.462 0.00 0.00 0.00 0.98
2436 3703 6.797707 ACTACTTCCTCCGTCCCATAATATA 58.202 40.000 0.00 0.00 0.00 0.86
2437 3704 5.652324 ACTACTTCCTCCGTCCCATAATAT 58.348 41.667 0.00 0.00 0.00 1.28
2438 3705 5.070823 ACTACTTCCTCCGTCCCATAATA 57.929 43.478 0.00 0.00 0.00 0.98
2439 3706 3.924922 ACTACTTCCTCCGTCCCATAAT 58.075 45.455 0.00 0.00 0.00 1.28
2440 3707 3.393426 ACTACTTCCTCCGTCCCATAA 57.607 47.619 0.00 0.00 0.00 1.90
2441 3708 3.718434 TCTACTACTTCCTCCGTCCCATA 59.282 47.826 0.00 0.00 0.00 2.74
2442 3709 2.512896 TCTACTACTTCCTCCGTCCCAT 59.487 50.000 0.00 0.00 0.00 4.00
2443 3710 1.918262 TCTACTACTTCCTCCGTCCCA 59.082 52.381 0.00 0.00 0.00 4.37
2444 3711 2.172293 TCTCTACTACTTCCTCCGTCCC 59.828 54.545 0.00 0.00 0.00 4.46
2445 3712 3.557228 TCTCTACTACTTCCTCCGTCC 57.443 52.381 0.00 0.00 0.00 4.79
2446 3713 4.768583 TCTTCTCTACTACTTCCTCCGTC 58.231 47.826 0.00 0.00 0.00 4.79
2447 3714 4.840716 TCTTCTCTACTACTTCCTCCGT 57.159 45.455 0.00 0.00 0.00 4.69
2448 3715 5.163632 GGTTTCTTCTCTACTACTTCCTCCG 60.164 48.000 0.00 0.00 0.00 4.63
2449 3716 5.715753 TGGTTTCTTCTCTACTACTTCCTCC 59.284 44.000 0.00 0.00 0.00 4.30
2450 3717 6.837471 TGGTTTCTTCTCTACTACTTCCTC 57.163 41.667 0.00 0.00 0.00 3.71
2451 3718 6.351456 GCATGGTTTCTTCTCTACTACTTCCT 60.351 42.308 0.00 0.00 0.00 3.36
2452 3719 5.813157 GCATGGTTTCTTCTCTACTACTTCC 59.187 44.000 0.00 0.00 0.00 3.46
2453 3720 5.813157 GGCATGGTTTCTTCTCTACTACTTC 59.187 44.000 0.00 0.00 0.00 3.01
2454 3721 5.485708 AGGCATGGTTTCTTCTCTACTACTT 59.514 40.000 0.00 0.00 0.00 2.24
2455 3722 5.026790 AGGCATGGTTTCTTCTCTACTACT 58.973 41.667 0.00 0.00 0.00 2.57
2456 3723 5.346181 AGGCATGGTTTCTTCTCTACTAC 57.654 43.478 0.00 0.00 0.00 2.73
2485 3936 4.338012 TGGCATGATGATGAACAAGTTCT 58.662 39.130 13.49 0.47 40.14 3.01
2626 4077 4.269183 CAAAGTCATGGGGCACACTTATA 58.731 43.478 0.00 0.00 0.00 0.98
2698 4149 5.833131 AGGTATTTCATTTTGGTGGCGATAT 59.167 36.000 0.00 0.00 0.00 1.63
2759 4210 4.721776 TCAGAACCTTAGGCACAGGAATAT 59.278 41.667 8.87 0.00 35.14 1.28
2800 4251 2.131183 CCTTCGATGAAGCGATTCCTC 58.869 52.381 11.45 9.78 40.35 3.71
2862 4315 0.250945 TTGCTGGGCGATAACCAACA 60.251 50.000 0.00 0.00 37.59 3.33
2863 4316 1.102978 ATTGCTGGGCGATAACCAAC 58.897 50.000 0.00 0.00 37.59 3.77
2867 4320 2.017049 AGAACATTGCTGGGCGATAAC 58.983 47.619 0.00 0.00 30.59 1.89
2907 4360 2.373169 ACAGCAGAACCAGGATTTCAGA 59.627 45.455 0.00 0.00 0.00 3.27
2984 4437 0.895559 GCCAGCTTAAGGTGCCAAGT 60.896 55.000 25.82 0.00 41.81 3.16
3015 4468 4.593206 ACATCTTGTCAGGGAAGAACACTA 59.407 41.667 0.00 0.00 33.22 2.74
3025 4478 5.124457 CCAGATAACAAACATCTTGTCAGGG 59.876 44.000 0.00 0.00 30.18 4.45
3029 4482 7.336931 ACCATACCAGATAACAAACATCTTGTC 59.663 37.037 0.00 0.00 32.42 3.18
3040 4493 6.238925 CGACAGACATACCATACCAGATAACA 60.239 42.308 0.00 0.00 0.00 2.41
3044 4497 3.005897 GCGACAGACATACCATACCAGAT 59.994 47.826 0.00 0.00 0.00 2.90
3047 4500 1.066454 CGCGACAGACATACCATACCA 59.934 52.381 0.00 0.00 0.00 3.25
3067 4520 5.063564 GTGTTAGCAATCACCTAACTAGCAC 59.936 44.000 11.25 0.00 43.08 4.40
3071 4524 6.999950 TCAAGTGTTAGCAATCACCTAACTA 58.000 36.000 11.25 0.00 43.08 2.24
3075 4528 6.048732 TCATCAAGTGTTAGCAATCACCTA 57.951 37.500 0.00 0.00 35.45 3.08
3076 4529 4.910195 TCATCAAGTGTTAGCAATCACCT 58.090 39.130 0.00 0.00 35.45 4.00
3077 4530 5.627499 TTCATCAAGTGTTAGCAATCACC 57.373 39.130 0.00 0.00 35.45 4.02
3078 4531 5.091431 GCTTCATCAAGTGTTAGCAATCAC 58.909 41.667 0.00 0.00 36.91 3.06
3079 4532 5.005740 AGCTTCATCAAGTGTTAGCAATCA 58.994 37.500 0.00 0.00 38.30 2.57
3080 4533 5.557891 AGCTTCATCAAGTGTTAGCAATC 57.442 39.130 0.00 0.00 38.30 2.67
3081 4534 6.176183 ACTAGCTTCATCAAGTGTTAGCAAT 58.824 36.000 0.00 0.00 38.30 3.56
3082 4535 5.551233 ACTAGCTTCATCAAGTGTTAGCAA 58.449 37.500 0.00 0.00 38.30 3.91
3083 4536 5.152623 ACTAGCTTCATCAAGTGTTAGCA 57.847 39.130 0.00 0.00 38.30 3.49
3084 4537 4.266502 CGACTAGCTTCATCAAGTGTTAGC 59.733 45.833 0.00 0.00 37.07 3.09
3085 4538 5.403246 ACGACTAGCTTCATCAAGTGTTAG 58.597 41.667 0.00 0.00 31.45 2.34
3086 4539 5.386958 ACGACTAGCTTCATCAAGTGTTA 57.613 39.130 0.00 0.00 31.45 2.41
3087 4540 4.258702 ACGACTAGCTTCATCAAGTGTT 57.741 40.909 0.00 0.00 31.45 3.32
3088 4541 3.944055 ACGACTAGCTTCATCAAGTGT 57.056 42.857 0.00 0.00 31.45 3.55
3089 4542 5.641709 TCTAACGACTAGCTTCATCAAGTG 58.358 41.667 0.00 0.00 31.45 3.16
3090 4543 5.899120 TCTAACGACTAGCTTCATCAAGT 57.101 39.130 0.00 0.00 31.45 3.16
3091 4544 5.918011 GGATCTAACGACTAGCTTCATCAAG 59.082 44.000 0.00 0.00 0.00 3.02
3092 4545 5.359860 TGGATCTAACGACTAGCTTCATCAA 59.640 40.000 0.00 0.00 0.00 2.57
3093 4546 4.887655 TGGATCTAACGACTAGCTTCATCA 59.112 41.667 0.00 0.00 0.00 3.07
3094 4547 5.216648 GTGGATCTAACGACTAGCTTCATC 58.783 45.833 0.00 0.00 0.00 2.92
3095 4548 4.261238 CGTGGATCTAACGACTAGCTTCAT 60.261 45.833 13.93 0.00 43.68 2.57
3096 4549 3.064958 CGTGGATCTAACGACTAGCTTCA 59.935 47.826 13.93 0.00 43.68 3.02
3097 4550 3.311871 TCGTGGATCTAACGACTAGCTTC 59.688 47.826 16.70 0.00 44.58 3.86
3098 4551 3.276857 TCGTGGATCTAACGACTAGCTT 58.723 45.455 16.70 0.00 44.58 3.74
3099 4552 2.915349 TCGTGGATCTAACGACTAGCT 58.085 47.619 16.70 0.00 44.58 3.32
3106 4559 3.710326 TGAGGATTCGTGGATCTAACG 57.290 47.619 13.21 13.21 42.36 3.18
3107 4560 7.332182 GGAAATATGAGGATTCGTGGATCTAAC 59.668 40.741 0.00 0.00 0.00 2.34
3108 4561 7.016170 TGGAAATATGAGGATTCGTGGATCTAA 59.984 37.037 0.00 0.00 0.00 2.10
3109 4562 6.496911 TGGAAATATGAGGATTCGTGGATCTA 59.503 38.462 0.00 0.00 0.00 1.98
3110 4563 5.307976 TGGAAATATGAGGATTCGTGGATCT 59.692 40.000 0.00 0.00 0.00 2.75
3111 4564 5.551233 TGGAAATATGAGGATTCGTGGATC 58.449 41.667 0.00 0.00 0.00 3.36
3112 4565 5.567037 TGGAAATATGAGGATTCGTGGAT 57.433 39.130 0.00 0.00 0.00 3.41
3113 4566 5.163205 ACATGGAAATATGAGGATTCGTGGA 60.163 40.000 0.00 0.00 0.00 4.02
3114 4567 5.065914 ACATGGAAATATGAGGATTCGTGG 58.934 41.667 0.00 0.00 0.00 4.94
3115 4568 5.759763 TGACATGGAAATATGAGGATTCGTG 59.240 40.000 0.00 0.00 0.00 4.35
3116 4569 5.928976 TGACATGGAAATATGAGGATTCGT 58.071 37.500 0.00 0.00 0.00 3.85
3117 4570 7.444629 AATGACATGGAAATATGAGGATTCG 57.555 36.000 0.00 0.00 0.00 3.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.