Multiple sequence alignment - TraesCS6B01G022600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G022600 chr6B 100.000 3233 0 0 1 3233 14163757 14166989 0.000000e+00 5971.0
1 TraesCS6B01G022600 chr6B 93.917 1907 78 16 775 2657 13971381 13969489 0.000000e+00 2844.0
2 TraesCS6B01G022600 chr6B 100.000 637 0 0 813 1449 14207245 14207881 0.000000e+00 1177.0
3 TraesCS6B01G022600 chr6B 100.000 637 0 0 813 1449 14223296 14223932 0.000000e+00 1177.0
4 TraesCS6B01G022600 chr6B 99.843 637 1 0 813 1449 14198647 14199283 0.000000e+00 1171.0
5 TraesCS6B01G022600 chr6B 99.686 637 2 0 813 1449 14215540 14216176 0.000000e+00 1166.0
6 TraesCS6B01G022600 chr6B 83.085 402 42 7 2 393 68520628 68521013 3.090000e-90 342.0
7 TraesCS6B01G022600 chr6B 84.431 334 31 17 4 330 598002058 598001739 3.130000e-80 309.0
8 TraesCS6B01G022600 chr6D 93.439 1890 116 7 770 2657 7557592 7559475 0.000000e+00 2796.0
9 TraesCS6B01G022600 chr6D 86.726 565 44 17 2680 3228 221198025 221198574 1.660000e-167 599.0
10 TraesCS6B01G022600 chr6D 91.617 167 12 1 549 713 389700710 389700544 2.510000e-56 230.0
11 TraesCS6B01G022600 chr6A 93.115 1554 94 4 775 2315 7723075 7724628 0.000000e+00 2265.0
12 TraesCS6B01G022600 chr6A 80.137 292 28 19 2368 2655 7724638 7724903 1.180000e-44 191.0
13 TraesCS6B01G022600 chr6A 86.755 151 17 3 2131 2279 6738495 6738346 7.180000e-37 165.0
14 TraesCS6B01G022600 chrUn 100.000 637 0 0 813 1449 364883628 364884264 0.000000e+00 1177.0
15 TraesCS6B01G022600 chrUn 100.000 637 0 0 813 1449 425466451 425467087 0.000000e+00 1177.0
16 TraesCS6B01G022600 chrUn 82.725 411 36 15 1 394 135305149 135305541 1.860000e-87 333.0
17 TraesCS6B01G022600 chrUn 82.683 410 38 13 1 394 155974368 155973976 1.860000e-87 333.0
18 TraesCS6B01G022600 chr2B 91.652 563 38 7 2674 3231 495923210 495922652 0.000000e+00 771.0
19 TraesCS6B01G022600 chr2B 89.542 153 16 0 1916 2068 364320718 364320870 9.150000e-46 195.0
20 TraesCS6B01G022600 chr4D 89.558 565 42 9 2678 3228 91079243 91079804 0.000000e+00 701.0
21 TraesCS6B01G022600 chr4D 83.945 436 38 16 2681 3111 374517178 374516770 3.910000e-104 388.0
22 TraesCS6B01G022600 chr3B 97.964 393 7 1 1 393 675253305 675253696 0.000000e+00 680.0
23 TraesCS6B01G022600 chr3B 84.119 403 37 11 2 393 778711324 778711710 6.590000e-97 364.0
24 TraesCS6B01G022600 chr3B 90.230 174 14 2 550 721 431039532 431039360 1.170000e-54 224.0
25 TraesCS6B01G022600 chr3B 95.556 45 2 0 530 574 155416893 155416937 4.470000e-09 73.1
26 TraesCS6B01G022600 chr2D 88.612 562 43 8 2680 3226 87416573 87417128 0.000000e+00 664.0
27 TraesCS6B01G022600 chr2D 88.036 560 53 6 2678 3224 318558568 318559126 0.000000e+00 651.0
28 TraesCS6B01G022600 chr2D 77.506 409 60 21 2677 3077 276908450 276908066 1.950000e-52 217.0
29 TraesCS6B01G022600 chr2D 89.542 153 16 0 1916 2068 297296306 297296458 9.150000e-46 195.0
30 TraesCS6B01G022600 chr4B 88.246 553 49 10 2680 3227 455767096 455767637 0.000000e+00 647.0
31 TraesCS6B01G022600 chr4B 84.597 409 35 11 2 393 364932186 364931789 6.550000e-102 381.0
32 TraesCS6B01G022600 chr5A 87.234 564 54 11 2680 3228 535584466 535585026 7.610000e-176 627.0
33 TraesCS6B01G022600 chr7B 88.588 517 48 6 2724 3231 48144957 48144443 4.580000e-173 617.0
34 TraesCS6B01G022600 chr7B 80.263 304 60 0 1895 2198 504472517 504472820 2.510000e-56 230.0
35 TraesCS6B01G022600 chr7B 91.176 170 12 2 546 713 700678702 700678534 9.020000e-56 228.0
36 TraesCS6B01G022600 chr5B 84.432 546 64 9 2700 3228 35448818 35449359 4.780000e-143 518.0
37 TraesCS6B01G022600 chr5B 90.643 171 13 2 554 722 440259708 440259539 1.170000e-54 224.0
38 TraesCS6B01G022600 chr5D 89.362 423 23 15 1 409 104824763 104824349 2.220000e-141 512.0
39 TraesCS6B01G022600 chr5D 85.223 494 60 4 2751 3231 435672658 435672165 2.240000e-136 496.0
40 TraesCS6B01G022600 chr5D 87.381 420 26 15 1 393 104561507 104561926 1.060000e-124 457.0
41 TraesCS6B01G022600 chr5D 75.404 557 88 31 2680 3223 375454287 375454807 1.170000e-54 224.0
42 TraesCS6B01G022600 chr1D 89.880 415 17 8 1 398 467367997 467368403 8.000000e-141 510.0
43 TraesCS6B01G022600 chr1D 91.617 167 11 2 554 718 36612297 36612132 9.020000e-56 228.0
44 TraesCS6B01G022600 chr2A 82.857 525 62 17 2720 3228 695002130 695002642 2.290000e-121 446.0
45 TraesCS6B01G022600 chr1B 83.210 405 39 10 2 393 598704876 598705264 8.590000e-91 344.0
46 TraesCS6B01G022600 chr7D 85.714 301 35 7 2678 2975 619163685 619163390 8.710000e-81 311.0
47 TraesCS6B01G022600 chr3A 92.771 166 10 1 547 710 596110387 596110552 4.170000e-59 239.0
48 TraesCS6B01G022600 chr7A 90.643 171 12 3 554 722 541438154 541437986 1.170000e-54 224.0
49 TraesCS6B01G022600 chr7A 91.398 93 8 0 301 393 200634906 200634814 9.410000e-26 128.0
50 TraesCS6B01G022600 chr4A 90.588 170 13 2 554 721 665713903 665714071 4.200000e-54 222.0
51 TraesCS6B01G022600 chr1A 89.266 177 16 2 546 720 452455259 452455084 5.430000e-53 219.0
52 TraesCS6B01G022600 chr3D 89.362 94 10 0 301 394 451881236 451881143 5.670000e-23 119.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G022600 chr6B 14163757 14166989 3232 False 5971 5971 100.000 1 3233 1 chr6B.!!$F1 3232
1 TraesCS6B01G022600 chr6B 13969489 13971381 1892 True 2844 2844 93.917 775 2657 1 chr6B.!!$R1 1882
2 TraesCS6B01G022600 chr6B 14207245 14207881 636 False 1177 1177 100.000 813 1449 1 chr6B.!!$F3 636
3 TraesCS6B01G022600 chr6B 14223296 14223932 636 False 1177 1177 100.000 813 1449 1 chr6B.!!$F5 636
4 TraesCS6B01G022600 chr6B 14198647 14199283 636 False 1171 1171 99.843 813 1449 1 chr6B.!!$F2 636
5 TraesCS6B01G022600 chr6B 14215540 14216176 636 False 1166 1166 99.686 813 1449 1 chr6B.!!$F4 636
6 TraesCS6B01G022600 chr6D 7557592 7559475 1883 False 2796 2796 93.439 770 2657 1 chr6D.!!$F1 1887
7 TraesCS6B01G022600 chr6D 221198025 221198574 549 False 599 599 86.726 2680 3228 1 chr6D.!!$F2 548
8 TraesCS6B01G022600 chr6A 7723075 7724903 1828 False 1228 2265 86.626 775 2655 2 chr6A.!!$F1 1880
9 TraesCS6B01G022600 chrUn 364883628 364884264 636 False 1177 1177 100.000 813 1449 1 chrUn.!!$F2 636
10 TraesCS6B01G022600 chrUn 425466451 425467087 636 False 1177 1177 100.000 813 1449 1 chrUn.!!$F3 636
11 TraesCS6B01G022600 chr2B 495922652 495923210 558 True 771 771 91.652 2674 3231 1 chr2B.!!$R1 557
12 TraesCS6B01G022600 chr4D 91079243 91079804 561 False 701 701 89.558 2678 3228 1 chr4D.!!$F1 550
13 TraesCS6B01G022600 chr2D 87416573 87417128 555 False 664 664 88.612 2680 3226 1 chr2D.!!$F1 546
14 TraesCS6B01G022600 chr2D 318558568 318559126 558 False 651 651 88.036 2678 3224 1 chr2D.!!$F3 546
15 TraesCS6B01G022600 chr4B 455767096 455767637 541 False 647 647 88.246 2680 3227 1 chr4B.!!$F1 547
16 TraesCS6B01G022600 chr5A 535584466 535585026 560 False 627 627 87.234 2680 3228 1 chr5A.!!$F1 548
17 TraesCS6B01G022600 chr7B 48144443 48144957 514 True 617 617 88.588 2724 3231 1 chr7B.!!$R1 507
18 TraesCS6B01G022600 chr5B 35448818 35449359 541 False 518 518 84.432 2700 3228 1 chr5B.!!$F1 528
19 TraesCS6B01G022600 chr5D 375454287 375454807 520 False 224 224 75.404 2680 3223 1 chr5D.!!$F2 543
20 TraesCS6B01G022600 chr2A 695002130 695002642 512 False 446 446 82.857 2720 3228 1 chr2A.!!$F1 508

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
337 338 0.031716 TCTCCTGTCCCTAGCATGCT 60.032 55.0 25.99 25.99 0.00 3.79 F
451 452 0.040603 GGACGCGATAACTACGGGAG 60.041 60.0 15.93 0.00 44.21 4.30 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2166 2198 0.323725 GCAGGAGGATCAAGGCCAAA 60.324 55.000 5.01 0.0 36.25 3.28 R
2437 2474 4.387862 AGAACAAACAAGGCTACGTATTCG 59.612 41.667 0.00 0.0 43.34 3.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 8.879342 TGGAAACACGAACAAAATTTGAATAT 57.121 26.923 13.19 0.00 33.40 1.28
36 37 9.319143 TGGAAACACGAACAAAATTTGAATATT 57.681 25.926 13.19 0.00 33.40 1.28
81 82 9.996554 AAAAAGAAGAAAAGAAAAGGACAAAGA 57.003 25.926 0.00 0.00 0.00 2.52
82 83 9.996554 AAAAGAAGAAAAGAAAAGGACAAAGAA 57.003 25.926 0.00 0.00 0.00 2.52
83 84 9.996554 AAAGAAGAAAAGAAAAGGACAAAGAAA 57.003 25.926 0.00 0.00 0.00 2.52
109 110 6.968131 AAAAACCAGAGAAAGAAAGCAAAC 57.032 33.333 0.00 0.00 0.00 2.93
110 111 5.659440 AAACCAGAGAAAGAAAGCAAACA 57.341 34.783 0.00 0.00 0.00 2.83
111 112 4.907879 ACCAGAGAAAGAAAGCAAACAG 57.092 40.909 0.00 0.00 0.00 3.16
112 113 4.526970 ACCAGAGAAAGAAAGCAAACAGA 58.473 39.130 0.00 0.00 0.00 3.41
113 114 4.949856 ACCAGAGAAAGAAAGCAAACAGAA 59.050 37.500 0.00 0.00 0.00 3.02
114 115 5.418840 ACCAGAGAAAGAAAGCAAACAGAAA 59.581 36.000 0.00 0.00 0.00 2.52
115 116 6.071391 ACCAGAGAAAGAAAGCAAACAGAAAA 60.071 34.615 0.00 0.00 0.00 2.29
116 117 6.813152 CCAGAGAAAGAAAGCAAACAGAAAAA 59.187 34.615 0.00 0.00 0.00 1.94
117 118 7.493645 CCAGAGAAAGAAAGCAAACAGAAAAAT 59.506 33.333 0.00 0.00 0.00 1.82
118 119 8.538039 CAGAGAAAGAAAGCAAACAGAAAAATC 58.462 33.333 0.00 0.00 0.00 2.17
119 120 8.253113 AGAGAAAGAAAGCAAACAGAAAAATCA 58.747 29.630 0.00 0.00 0.00 2.57
120 121 8.776376 AGAAAGAAAGCAAACAGAAAAATCAA 57.224 26.923 0.00 0.00 0.00 2.57
121 122 9.218440 AGAAAGAAAGCAAACAGAAAAATCAAA 57.782 25.926 0.00 0.00 0.00 2.69
122 123 9.824534 GAAAGAAAGCAAACAGAAAAATCAAAA 57.175 25.926 0.00 0.00 0.00 2.44
211 212 9.809096 AAGAAAGCTAGAAAAGAAAGGAAAAAG 57.191 29.630 0.00 0.00 0.00 2.27
212 213 9.190317 AGAAAGCTAGAAAAGAAAGGAAAAAGA 57.810 29.630 0.00 0.00 0.00 2.52
213 214 9.457110 GAAAGCTAGAAAAGAAAGGAAAAAGAG 57.543 33.333 0.00 0.00 0.00 2.85
214 215 8.753497 AAGCTAGAAAAGAAAGGAAAAAGAGA 57.247 30.769 0.00 0.00 0.00 3.10
215 216 8.753497 AGCTAGAAAAGAAAGGAAAAAGAGAA 57.247 30.769 0.00 0.00 0.00 2.87
216 217 9.190317 AGCTAGAAAAGAAAGGAAAAAGAGAAA 57.810 29.630 0.00 0.00 0.00 2.52
217 218 9.239002 GCTAGAAAAGAAAGGAAAAAGAGAAAC 57.761 33.333 0.00 0.00 0.00 2.78
220 221 9.025041 AGAAAAGAAAGGAAAAAGAGAAACAGA 57.975 29.630 0.00 0.00 0.00 3.41
221 222 9.639601 GAAAAGAAAGGAAAAAGAGAAACAGAA 57.360 29.630 0.00 0.00 0.00 3.02
222 223 9.996554 AAAAGAAAGGAAAAAGAGAAACAGAAA 57.003 25.926 0.00 0.00 0.00 2.52
223 224 9.996554 AAAGAAAGGAAAAAGAGAAACAGAAAA 57.003 25.926 0.00 0.00 0.00 2.29
224 225 9.645059 AAGAAAGGAAAAAGAGAAACAGAAAAG 57.355 29.630 0.00 0.00 0.00 2.27
225 226 8.253810 AGAAAGGAAAAAGAGAAACAGAAAAGG 58.746 33.333 0.00 0.00 0.00 3.11
226 227 7.718334 AAGGAAAAAGAGAAACAGAAAAGGA 57.282 32.000 0.00 0.00 0.00 3.36
227 228 7.718334 AGGAAAAAGAGAAACAGAAAAGGAA 57.282 32.000 0.00 0.00 0.00 3.36
228 229 7.776107 AGGAAAAAGAGAAACAGAAAAGGAAG 58.224 34.615 0.00 0.00 0.00 3.46
229 230 7.615757 AGGAAAAAGAGAAACAGAAAAGGAAGA 59.384 33.333 0.00 0.00 0.00 2.87
230 231 8.251026 GGAAAAAGAGAAACAGAAAAGGAAGAA 58.749 33.333 0.00 0.00 0.00 2.52
231 232 9.295214 GAAAAAGAGAAACAGAAAAGGAAGAAG 57.705 33.333 0.00 0.00 0.00 2.85
232 233 8.581253 AAAAGAGAAACAGAAAAGGAAGAAGA 57.419 30.769 0.00 0.00 0.00 2.87
233 234 8.581253 AAAGAGAAACAGAAAAGGAAGAAGAA 57.419 30.769 0.00 0.00 0.00 2.52
234 235 7.800155 AGAGAAACAGAAAAGGAAGAAGAAG 57.200 36.000 0.00 0.00 0.00 2.85
235 236 7.569240 AGAGAAACAGAAAAGGAAGAAGAAGA 58.431 34.615 0.00 0.00 0.00 2.87
236 237 8.049721 AGAGAAACAGAAAAGGAAGAAGAAGAA 58.950 33.333 0.00 0.00 0.00 2.52
237 238 8.581253 AGAAACAGAAAAGGAAGAAGAAGAAA 57.419 30.769 0.00 0.00 0.00 2.52
238 239 8.681806 AGAAACAGAAAAGGAAGAAGAAGAAAG 58.318 33.333 0.00 0.00 0.00 2.62
239 240 6.951062 ACAGAAAAGGAAGAAGAAGAAAGG 57.049 37.500 0.00 0.00 0.00 3.11
240 241 6.663734 ACAGAAAAGGAAGAAGAAGAAAGGA 58.336 36.000 0.00 0.00 0.00 3.36
241 242 7.119387 ACAGAAAAGGAAGAAGAAGAAAGGAA 58.881 34.615 0.00 0.00 0.00 3.36
242 243 7.615757 ACAGAAAAGGAAGAAGAAGAAAGGAAA 59.384 33.333 0.00 0.00 0.00 3.13
243 244 8.470002 CAGAAAAGGAAGAAGAAGAAAGGAAAA 58.530 33.333 0.00 0.00 0.00 2.29
244 245 9.035890 AGAAAAGGAAGAAGAAGAAAGGAAAAA 57.964 29.630 0.00 0.00 0.00 1.94
245 246 9.307121 GAAAAGGAAGAAGAAGAAAGGAAAAAG 57.693 33.333 0.00 0.00 0.00 2.27
246 247 6.968263 AGGAAGAAGAAGAAAGGAAAAAGG 57.032 37.500 0.00 0.00 0.00 3.11
247 248 6.673583 AGGAAGAAGAAGAAAGGAAAAAGGA 58.326 36.000 0.00 0.00 0.00 3.36
248 249 7.126061 AGGAAGAAGAAGAAAGGAAAAAGGAA 58.874 34.615 0.00 0.00 0.00 3.36
249 250 7.619698 AGGAAGAAGAAGAAAGGAAAAAGGAAA 59.380 33.333 0.00 0.00 0.00 3.13
250 251 7.707035 GGAAGAAGAAGAAAGGAAAAAGGAAAC 59.293 37.037 0.00 0.00 0.00 2.78
251 252 6.796426 AGAAGAAGAAAGGAAAAAGGAAACG 58.204 36.000 0.00 0.00 0.00 3.60
252 253 6.602009 AGAAGAAGAAAGGAAAAAGGAAACGA 59.398 34.615 0.00 0.00 0.00 3.85
253 254 6.769134 AGAAGAAAGGAAAAAGGAAACGAA 57.231 33.333 0.00 0.00 0.00 3.85
254 255 7.165460 AGAAGAAAGGAAAAAGGAAACGAAA 57.835 32.000 0.00 0.00 0.00 3.46
255 256 7.608153 AGAAGAAAGGAAAAAGGAAACGAAAA 58.392 30.769 0.00 0.00 0.00 2.29
256 257 8.092068 AGAAGAAAGGAAAAAGGAAACGAAAAA 58.908 29.630 0.00 0.00 0.00 1.94
295 296 4.503714 AAAACTGAGTTCAGAGTTGGGA 57.496 40.909 15.63 0.00 46.59 4.37
296 297 3.760580 AACTGAGTTCAGAGTTGGGAG 57.239 47.619 15.63 0.00 46.59 4.30
297 298 1.346068 ACTGAGTTCAGAGTTGGGAGC 59.654 52.381 15.63 0.00 46.59 4.70
298 299 1.345741 CTGAGTTCAGAGTTGGGAGCA 59.654 52.381 2.97 0.00 46.59 4.26
299 300 1.070758 TGAGTTCAGAGTTGGGAGCAC 59.929 52.381 0.00 0.00 0.00 4.40
300 301 1.346068 GAGTTCAGAGTTGGGAGCACT 59.654 52.381 0.00 0.00 0.00 4.40
301 302 1.071385 AGTTCAGAGTTGGGAGCACTG 59.929 52.381 0.00 0.00 0.00 3.66
302 303 0.397941 TTCAGAGTTGGGAGCACTGG 59.602 55.000 0.00 0.00 0.00 4.00
303 304 0.471780 TCAGAGTTGGGAGCACTGGA 60.472 55.000 0.00 0.00 0.00 3.86
304 305 0.397941 CAGAGTTGGGAGCACTGGAA 59.602 55.000 0.00 0.00 0.00 3.53
305 306 0.398318 AGAGTTGGGAGCACTGGAAC 59.602 55.000 0.00 0.00 0.00 3.62
306 307 0.398318 GAGTTGGGAGCACTGGAACT 59.602 55.000 0.00 0.00 0.00 3.01
307 308 0.109342 AGTTGGGAGCACTGGAACTG 59.891 55.000 0.00 0.00 0.00 3.16
308 309 0.890996 GTTGGGAGCACTGGAACTGG 60.891 60.000 0.00 0.00 0.00 4.00
309 310 2.067932 TTGGGAGCACTGGAACTGGG 62.068 60.000 0.00 0.00 0.00 4.45
326 327 4.554036 GCCGGCCCATCTCCTGTC 62.554 72.222 18.11 0.00 0.00 3.51
327 328 3.866582 CCGGCCCATCTCCTGTCC 61.867 72.222 0.00 0.00 0.00 4.02
328 329 3.866582 CGGCCCATCTCCTGTCCC 61.867 72.222 0.00 0.00 0.00 4.46
329 330 2.367512 GGCCCATCTCCTGTCCCT 60.368 66.667 0.00 0.00 0.00 4.20
330 331 1.074471 GGCCCATCTCCTGTCCCTA 60.074 63.158 0.00 0.00 0.00 3.53
331 332 1.124477 GGCCCATCTCCTGTCCCTAG 61.124 65.000 0.00 0.00 0.00 3.02
332 333 1.763546 GCCCATCTCCTGTCCCTAGC 61.764 65.000 0.00 0.00 0.00 3.42
333 334 0.399091 CCCATCTCCTGTCCCTAGCA 60.399 60.000 0.00 0.00 0.00 3.49
334 335 1.727062 CCATCTCCTGTCCCTAGCAT 58.273 55.000 0.00 0.00 0.00 3.79
335 336 1.347050 CCATCTCCTGTCCCTAGCATG 59.653 57.143 0.00 0.00 0.00 4.06
336 337 1.055040 ATCTCCTGTCCCTAGCATGC 58.945 55.000 10.51 10.51 0.00 4.06
337 338 0.031716 TCTCCTGTCCCTAGCATGCT 60.032 55.000 25.99 25.99 0.00 3.79
338 339 0.835941 CTCCTGTCCCTAGCATGCTT 59.164 55.000 28.02 10.27 0.00 3.91
339 340 0.833287 TCCTGTCCCTAGCATGCTTC 59.167 55.000 28.02 11.83 0.00 3.86
340 341 0.179034 CCTGTCCCTAGCATGCTTCC 60.179 60.000 28.02 9.91 0.00 3.46
341 342 0.179034 CTGTCCCTAGCATGCTTCCC 60.179 60.000 28.02 10.27 0.00 3.97
342 343 1.149401 GTCCCTAGCATGCTTCCCC 59.851 63.158 28.02 6.91 0.00 4.81
343 344 1.004758 TCCCTAGCATGCTTCCCCT 59.995 57.895 28.02 2.18 0.00 4.79
344 345 1.150081 CCCTAGCATGCTTCCCCTG 59.850 63.158 28.02 9.21 0.00 4.45
345 346 1.639635 CCCTAGCATGCTTCCCCTGT 61.640 60.000 28.02 0.44 0.00 4.00
346 347 0.465097 CCTAGCATGCTTCCCCTGTG 60.465 60.000 28.02 6.16 0.00 3.66
347 348 1.077501 TAGCATGCTTCCCCTGTGC 60.078 57.895 28.02 0.00 36.11 4.57
348 349 2.874648 TAGCATGCTTCCCCTGTGCG 62.875 60.000 28.02 0.00 40.54 5.34
349 350 2.046023 CATGCTTCCCCTGTGCGA 60.046 61.111 0.00 0.00 0.00 5.10
350 351 1.675310 CATGCTTCCCCTGTGCGAA 60.675 57.895 0.00 0.00 0.00 4.70
351 352 1.033746 CATGCTTCCCCTGTGCGAAT 61.034 55.000 0.00 0.00 0.00 3.34
352 353 1.033746 ATGCTTCCCCTGTGCGAATG 61.034 55.000 0.00 0.00 0.00 2.67
353 354 3.056313 GCTTCCCCTGTGCGAATGC 62.056 63.158 0.00 0.00 43.20 3.56
354 355 2.361104 TTCCCCTGTGCGAATGCC 60.361 61.111 0.00 0.00 41.78 4.40
355 356 3.936772 TTCCCCTGTGCGAATGCCC 62.937 63.158 0.00 0.00 41.78 5.36
357 358 4.776322 CCCTGTGCGAATGCCCGA 62.776 66.667 0.00 0.00 41.78 5.14
358 359 3.499737 CCTGTGCGAATGCCCGAC 61.500 66.667 0.00 0.00 41.78 4.79
359 360 2.741985 CTGTGCGAATGCCCGACA 60.742 61.111 0.00 0.00 41.78 4.35
360 361 2.281139 TGTGCGAATGCCCGACAA 60.281 55.556 0.00 0.00 41.78 3.18
361 362 1.647545 CTGTGCGAATGCCCGACAAT 61.648 55.000 0.00 0.00 41.78 2.71
362 363 1.240641 TGTGCGAATGCCCGACAATT 61.241 50.000 0.00 0.00 41.78 2.32
363 364 0.523335 GTGCGAATGCCCGACAATTC 60.523 55.000 0.00 0.00 41.78 2.17
364 365 1.297598 GCGAATGCCCGACAATTCG 60.298 57.895 16.78 16.78 45.85 3.34
365 366 1.297598 CGAATGCCCGACAATTCGC 60.298 57.895 11.48 0.00 44.43 4.70
366 367 1.064134 GAATGCCCGACAATTCGCC 59.936 57.895 0.00 0.00 44.43 5.54
367 368 2.646799 GAATGCCCGACAATTCGCCG 62.647 60.000 0.00 0.00 44.43 6.46
370 371 3.864686 CCCGACAATTCGCCGCAG 61.865 66.667 0.00 0.00 44.43 5.18
371 372 4.520846 CCGACAATTCGCCGCAGC 62.521 66.667 0.00 0.00 44.43 5.25
387 388 4.587189 GCGAGCCGCGAATAGGGT 62.587 66.667 8.23 0.00 44.55 4.34
388 389 2.106332 CGAGCCGCGAATAGGGTT 59.894 61.111 8.23 0.00 44.57 4.11
389 390 1.520787 CGAGCCGCGAATAGGGTTT 60.521 57.895 8.23 0.00 44.57 3.27
390 391 1.087771 CGAGCCGCGAATAGGGTTTT 61.088 55.000 8.23 0.00 44.57 2.43
391 392 0.656259 GAGCCGCGAATAGGGTTTTC 59.344 55.000 8.23 0.00 39.92 2.29
392 393 0.746923 AGCCGCGAATAGGGTTTTCC 60.747 55.000 8.23 0.00 35.75 3.13
404 405 0.733150 GGTTTTCCCATAGCAGACGC 59.267 55.000 0.00 0.00 38.99 5.19
405 406 0.373716 GTTTTCCCATAGCAGACGCG 59.626 55.000 3.53 3.53 45.49 6.01
406 407 0.742990 TTTTCCCATAGCAGACGCGG 60.743 55.000 12.47 0.00 45.49 6.46
407 408 3.733344 TTCCCATAGCAGACGCGGC 62.733 63.158 12.47 7.86 45.49 6.53
408 409 4.529219 CCCATAGCAGACGCGGCA 62.529 66.667 17.71 0.00 45.49 5.69
409 410 2.511373 CCATAGCAGACGCGGCAA 60.511 61.111 17.71 0.00 45.49 4.52
410 411 2.703409 CATAGCAGACGCGGCAAC 59.297 61.111 17.71 5.11 45.49 4.17
411 412 2.511600 ATAGCAGACGCGGCAACC 60.512 61.111 17.71 0.41 45.49 3.77
424 425 2.347697 GGCAACCGATCCTCAAAAAC 57.652 50.000 0.00 0.00 0.00 2.43
425 426 1.611491 GGCAACCGATCCTCAAAAACA 59.389 47.619 0.00 0.00 0.00 2.83
426 427 2.231235 GGCAACCGATCCTCAAAAACAT 59.769 45.455 0.00 0.00 0.00 2.71
427 428 3.442273 GGCAACCGATCCTCAAAAACATA 59.558 43.478 0.00 0.00 0.00 2.29
428 429 4.082463 GGCAACCGATCCTCAAAAACATAA 60.082 41.667 0.00 0.00 0.00 1.90
429 430 5.465935 GCAACCGATCCTCAAAAACATAAA 58.534 37.500 0.00 0.00 0.00 1.40
430 431 5.923684 GCAACCGATCCTCAAAAACATAAAA 59.076 36.000 0.00 0.00 0.00 1.52
431 432 6.128929 GCAACCGATCCTCAAAAACATAAAAC 60.129 38.462 0.00 0.00 0.00 2.43
432 433 5.695818 ACCGATCCTCAAAAACATAAAACG 58.304 37.500 0.00 0.00 0.00 3.60
433 434 5.092781 CCGATCCTCAAAAACATAAAACGG 58.907 41.667 0.00 0.00 0.00 4.44
434 435 5.106475 CCGATCCTCAAAAACATAAAACGGA 60.106 40.000 0.00 0.00 36.91 4.69
435 436 5.793457 CGATCCTCAAAAACATAAAACGGAC 59.207 40.000 0.00 0.00 0.00 4.79
436 437 5.098218 TCCTCAAAAACATAAAACGGACG 57.902 39.130 0.00 0.00 0.00 4.79
437 438 3.666797 CCTCAAAAACATAAAACGGACGC 59.333 43.478 0.00 0.00 0.00 5.19
438 439 3.289911 TCAAAAACATAAAACGGACGCG 58.710 40.909 3.53 3.53 0.00 6.01
439 440 3.002042 TCAAAAACATAAAACGGACGCGA 59.998 39.130 15.93 0.00 0.00 5.87
440 441 3.817148 AAAACATAAAACGGACGCGAT 57.183 38.095 15.93 0.00 0.00 4.58
441 442 4.925061 AAAACATAAAACGGACGCGATA 57.075 36.364 15.93 0.00 0.00 2.92
442 443 4.925061 AAACATAAAACGGACGCGATAA 57.075 36.364 15.93 0.00 0.00 1.75
443 444 3.912708 ACATAAAACGGACGCGATAAC 57.087 42.857 15.93 0.44 0.00 1.89
444 445 3.514645 ACATAAAACGGACGCGATAACT 58.485 40.909 15.93 0.00 0.00 2.24
445 446 4.671377 ACATAAAACGGACGCGATAACTA 58.329 39.130 15.93 0.00 0.00 2.24
446 447 4.500477 ACATAAAACGGACGCGATAACTAC 59.500 41.667 15.93 0.00 0.00 2.73
447 448 1.538276 AAACGGACGCGATAACTACG 58.462 50.000 15.93 4.52 0.00 3.51
448 449 0.248215 AACGGACGCGATAACTACGG 60.248 55.000 15.93 2.18 0.00 4.02
449 450 1.369689 CGGACGCGATAACTACGGG 60.370 63.158 15.93 0.00 46.19 5.28
450 451 1.775039 CGGACGCGATAACTACGGGA 61.775 60.000 15.93 0.00 44.21 5.14
451 452 0.040603 GGACGCGATAACTACGGGAG 60.041 60.000 15.93 0.00 44.21 4.30
452 453 0.659711 GACGCGATAACTACGGGAGC 60.660 60.000 15.93 0.29 44.21 4.70
453 454 1.357690 CGCGATAACTACGGGAGCA 59.642 57.895 0.00 0.00 44.21 4.26
454 455 0.933509 CGCGATAACTACGGGAGCAC 60.934 60.000 0.00 0.00 44.21 4.40
455 456 0.101759 GCGATAACTACGGGAGCACA 59.898 55.000 0.00 0.00 0.00 4.57
456 457 1.269621 GCGATAACTACGGGAGCACAT 60.270 52.381 0.00 0.00 0.00 3.21
457 458 2.030540 GCGATAACTACGGGAGCACATA 60.031 50.000 0.00 0.00 0.00 2.29
458 459 3.551454 GCGATAACTACGGGAGCACATAA 60.551 47.826 0.00 0.00 0.00 1.90
459 460 3.979495 CGATAACTACGGGAGCACATAAC 59.021 47.826 0.00 0.00 0.00 1.89
460 461 2.288961 AACTACGGGAGCACATAACG 57.711 50.000 0.00 0.00 0.00 3.18
461 462 1.466856 ACTACGGGAGCACATAACGA 58.533 50.000 0.00 0.00 0.00 3.85
462 463 1.820519 ACTACGGGAGCACATAACGAA 59.179 47.619 0.00 0.00 0.00 3.85
463 464 2.190981 CTACGGGAGCACATAACGAAC 58.809 52.381 0.00 0.00 0.00 3.95
464 465 0.734942 ACGGGAGCACATAACGAACG 60.735 55.000 0.00 0.00 0.00 3.95
465 466 1.713830 GGGAGCACATAACGAACGC 59.286 57.895 0.00 0.00 0.00 4.84
466 467 1.343821 GGAGCACATAACGAACGCG 59.656 57.895 3.53 3.53 44.79 6.01
467 468 1.295930 GAGCACATAACGAACGCGC 60.296 57.895 5.73 0.00 42.48 6.86
468 469 2.276430 GCACATAACGAACGCGCC 60.276 61.111 5.73 0.00 42.48 6.53
469 470 3.017656 GCACATAACGAACGCGCCA 62.018 57.895 5.73 0.00 42.48 5.69
470 471 1.493750 CACATAACGAACGCGCCAA 59.506 52.632 5.73 0.00 42.48 4.52
471 472 0.787908 CACATAACGAACGCGCCAAC 60.788 55.000 5.73 0.00 42.48 3.77
472 473 0.947180 ACATAACGAACGCGCCAACT 60.947 50.000 5.73 0.00 42.48 3.16
473 474 0.993532 CATAACGAACGCGCCAACTA 59.006 50.000 5.73 0.00 42.48 2.24
474 475 0.994263 ATAACGAACGCGCCAACTAC 59.006 50.000 5.73 0.00 42.48 2.73
475 476 0.318529 TAACGAACGCGCCAACTACA 60.319 50.000 5.73 0.00 42.48 2.74
476 477 1.554042 AACGAACGCGCCAACTACAG 61.554 55.000 5.73 0.00 42.48 2.74
477 478 1.731613 CGAACGCGCCAACTACAGA 60.732 57.895 5.73 0.00 0.00 3.41
478 479 1.279527 CGAACGCGCCAACTACAGAA 61.280 55.000 5.73 0.00 0.00 3.02
479 480 0.863144 GAACGCGCCAACTACAGAAA 59.137 50.000 5.73 0.00 0.00 2.52
480 481 1.463444 GAACGCGCCAACTACAGAAAT 59.537 47.619 5.73 0.00 0.00 2.17
481 482 1.076332 ACGCGCCAACTACAGAAATC 58.924 50.000 5.73 0.00 0.00 2.17
482 483 1.075542 CGCGCCAACTACAGAAATCA 58.924 50.000 0.00 0.00 0.00 2.57
483 484 1.463056 CGCGCCAACTACAGAAATCAA 59.537 47.619 0.00 0.00 0.00 2.57
484 485 2.474526 CGCGCCAACTACAGAAATCAAG 60.475 50.000 0.00 0.00 0.00 3.02
485 486 2.159517 GCGCCAACTACAGAAATCAAGG 60.160 50.000 0.00 0.00 0.00 3.61
486 487 2.420022 CGCCAACTACAGAAATCAAGGG 59.580 50.000 0.00 0.00 0.00 3.95
487 488 2.164422 GCCAACTACAGAAATCAAGGGC 59.836 50.000 0.00 0.00 0.00 5.19
488 489 3.690460 CCAACTACAGAAATCAAGGGCT 58.310 45.455 0.00 0.00 0.00 5.19
489 490 3.691609 CCAACTACAGAAATCAAGGGCTC 59.308 47.826 0.00 0.00 0.00 4.70
490 491 4.326826 CAACTACAGAAATCAAGGGCTCA 58.673 43.478 0.00 0.00 0.00 4.26
491 492 3.944087 ACTACAGAAATCAAGGGCTCAC 58.056 45.455 0.00 0.00 0.00 3.51
492 493 2.957402 ACAGAAATCAAGGGCTCACA 57.043 45.000 0.00 0.00 0.00 3.58
493 494 2.508526 ACAGAAATCAAGGGCTCACAC 58.491 47.619 0.00 0.00 0.00 3.82
494 495 1.466167 CAGAAATCAAGGGCTCACACG 59.534 52.381 0.00 0.00 0.00 4.49
495 496 1.347707 AGAAATCAAGGGCTCACACGA 59.652 47.619 0.00 0.00 0.00 4.35
496 497 2.151202 GAAATCAAGGGCTCACACGAA 58.849 47.619 0.00 0.00 0.00 3.85
497 498 1.813513 AATCAAGGGCTCACACGAAG 58.186 50.000 0.00 0.00 0.00 3.79
498 499 0.976641 ATCAAGGGCTCACACGAAGA 59.023 50.000 0.00 0.00 0.00 2.87
499 500 0.756294 TCAAGGGCTCACACGAAGAA 59.244 50.000 0.00 0.00 0.00 2.52
500 501 1.140052 TCAAGGGCTCACACGAAGAAA 59.860 47.619 0.00 0.00 0.00 2.52
501 502 1.946768 CAAGGGCTCACACGAAGAAAA 59.053 47.619 0.00 0.00 0.00 2.29
502 503 2.341846 AGGGCTCACACGAAGAAAAA 57.658 45.000 0.00 0.00 0.00 1.94
523 524 4.985044 AAAACGACAGTAGATCAAACGG 57.015 40.909 0.00 0.00 0.00 4.44
524 525 3.655276 AACGACAGTAGATCAAACGGT 57.345 42.857 0.00 0.00 0.00 4.83
525 526 2.942710 ACGACAGTAGATCAAACGGTG 58.057 47.619 8.36 4.86 0.00 4.94
526 527 2.555325 ACGACAGTAGATCAAACGGTGA 59.445 45.455 8.36 0.00 41.67 4.02
527 528 3.172050 CGACAGTAGATCAAACGGTGAG 58.828 50.000 8.36 0.96 40.43 3.51
528 529 3.512680 GACAGTAGATCAAACGGTGAGG 58.487 50.000 8.36 0.00 40.43 3.86
529 530 2.233922 ACAGTAGATCAAACGGTGAGGG 59.766 50.000 0.00 0.00 40.43 4.30
530 531 2.496070 CAGTAGATCAAACGGTGAGGGA 59.504 50.000 0.00 0.00 40.43 4.20
531 532 3.133003 CAGTAGATCAAACGGTGAGGGAT 59.867 47.826 0.00 0.00 40.43 3.85
532 533 2.698855 AGATCAAACGGTGAGGGATG 57.301 50.000 0.00 0.00 40.43 3.51
533 534 1.909302 AGATCAAACGGTGAGGGATGT 59.091 47.619 0.00 0.00 40.43 3.06
534 535 2.009774 GATCAAACGGTGAGGGATGTG 58.990 52.381 0.00 0.00 40.43 3.21
535 536 1.052617 TCAAACGGTGAGGGATGTGA 58.947 50.000 0.00 0.00 0.00 3.58
536 537 1.001974 TCAAACGGTGAGGGATGTGAG 59.998 52.381 0.00 0.00 0.00 3.51
537 538 1.001974 CAAACGGTGAGGGATGTGAGA 59.998 52.381 0.00 0.00 0.00 3.27
538 539 1.573108 AACGGTGAGGGATGTGAGAT 58.427 50.000 0.00 0.00 0.00 2.75
539 540 2.454336 ACGGTGAGGGATGTGAGATA 57.546 50.000 0.00 0.00 0.00 1.98
540 541 2.311463 ACGGTGAGGGATGTGAGATAG 58.689 52.381 0.00 0.00 0.00 2.08
541 542 1.000283 CGGTGAGGGATGTGAGATAGC 60.000 57.143 0.00 0.00 0.00 2.97
542 543 2.324541 GGTGAGGGATGTGAGATAGCT 58.675 52.381 0.00 0.00 0.00 3.32
543 544 3.501349 GGTGAGGGATGTGAGATAGCTA 58.499 50.000 0.00 0.00 0.00 3.32
544 545 4.093011 GGTGAGGGATGTGAGATAGCTAT 58.907 47.826 5.76 5.76 0.00 2.97
545 546 4.530161 GGTGAGGGATGTGAGATAGCTATT 59.470 45.833 7.87 0.00 0.00 1.73
546 547 5.012561 GGTGAGGGATGTGAGATAGCTATTT 59.987 44.000 7.87 1.24 0.00 1.40
547 548 6.162777 GTGAGGGATGTGAGATAGCTATTTC 58.837 44.000 15.64 15.64 0.00 2.17
548 549 5.840693 TGAGGGATGTGAGATAGCTATTTCA 59.159 40.000 20.06 20.06 0.00 2.69
549 550 6.107901 AGGGATGTGAGATAGCTATTTCAC 57.892 41.667 34.38 34.38 43.91 3.18
556 557 8.470657 TGTGAGATAGCTATTTCACATCTACT 57.529 34.615 37.45 16.75 46.42 2.57
557 558 8.572185 TGTGAGATAGCTATTTCACATCTACTC 58.428 37.037 37.45 22.51 46.42 2.59
558 559 8.026607 GTGAGATAGCTATTTCACATCTACTCC 58.973 40.741 35.28 16.61 43.42 3.85
559 560 7.177568 TGAGATAGCTATTTCACATCTACTCCC 59.822 40.741 20.06 0.00 0.00 4.30
560 561 7.245292 AGATAGCTATTTCACATCTACTCCCT 58.755 38.462 7.87 0.00 0.00 4.20
561 562 5.799827 AGCTATTTCACATCTACTCCCTC 57.200 43.478 0.00 0.00 0.00 4.30
562 563 4.591072 AGCTATTTCACATCTACTCCCTCC 59.409 45.833 0.00 0.00 0.00 4.30
563 564 4.559704 GCTATTTCACATCTACTCCCTCCG 60.560 50.000 0.00 0.00 0.00 4.63
564 565 2.526888 TTCACATCTACTCCCTCCGT 57.473 50.000 0.00 0.00 0.00 4.69
565 566 2.526888 TCACATCTACTCCCTCCGTT 57.473 50.000 0.00 0.00 0.00 4.44
566 567 2.376109 TCACATCTACTCCCTCCGTTC 58.624 52.381 0.00 0.00 0.00 3.95
567 568 1.409427 CACATCTACTCCCTCCGTTCC 59.591 57.143 0.00 0.00 0.00 3.62
568 569 1.288335 ACATCTACTCCCTCCGTTCCT 59.712 52.381 0.00 0.00 0.00 3.36
569 570 2.512896 ACATCTACTCCCTCCGTTCCTA 59.487 50.000 0.00 0.00 0.00 2.94
570 571 3.053095 ACATCTACTCCCTCCGTTCCTAA 60.053 47.826 0.00 0.00 0.00 2.69
571 572 3.744940 TCTACTCCCTCCGTTCCTAAA 57.255 47.619 0.00 0.00 0.00 1.85
572 573 4.261411 TCTACTCCCTCCGTTCCTAAAT 57.739 45.455 0.00 0.00 0.00 1.40
573 574 5.393068 TCTACTCCCTCCGTTCCTAAATA 57.607 43.478 0.00 0.00 0.00 1.40
574 575 5.961897 TCTACTCCCTCCGTTCCTAAATAT 58.038 41.667 0.00 0.00 0.00 1.28
575 576 4.957684 ACTCCCTCCGTTCCTAAATATG 57.042 45.455 0.00 0.00 0.00 1.78
576 577 4.296056 ACTCCCTCCGTTCCTAAATATGT 58.704 43.478 0.00 0.00 0.00 2.29
577 578 4.344390 ACTCCCTCCGTTCCTAAATATGTC 59.656 45.833 0.00 0.00 0.00 3.06
578 579 4.553678 TCCCTCCGTTCCTAAATATGTCT 58.446 43.478 0.00 0.00 0.00 3.41
579 580 4.966805 TCCCTCCGTTCCTAAATATGTCTT 59.033 41.667 0.00 0.00 0.00 3.01
580 581 5.427481 TCCCTCCGTTCCTAAATATGTCTTT 59.573 40.000 0.00 0.00 0.00 2.52
581 582 6.069847 TCCCTCCGTTCCTAAATATGTCTTTT 60.070 38.462 0.00 0.00 0.00 2.27
582 583 6.602009 CCCTCCGTTCCTAAATATGTCTTTTT 59.398 38.462 0.00 0.00 0.00 1.94
583 584 7.771826 CCCTCCGTTCCTAAATATGTCTTTTTA 59.228 37.037 0.00 0.00 0.00 1.52
584 585 9.169592 CCTCCGTTCCTAAATATGTCTTTTTAA 57.830 33.333 0.00 0.00 0.00 1.52
610 611 8.964420 AAATTTCAAATGAACTACCACATACG 57.036 30.769 0.00 0.00 33.13 3.06
611 612 6.489127 TTTCAAATGAACTACCACATACGG 57.511 37.500 0.00 0.00 33.13 4.02
612 613 5.408880 TCAAATGAACTACCACATACGGA 57.591 39.130 0.00 0.00 0.00 4.69
613 614 5.984725 TCAAATGAACTACCACATACGGAT 58.015 37.500 0.00 0.00 0.00 4.18
614 615 5.815222 TCAAATGAACTACCACATACGGATG 59.185 40.000 5.94 5.94 39.16 3.51
616 617 6.474140 AATGAACTACCACATACGGATGTA 57.526 37.500 14.23 0.00 44.82 2.29
617 618 6.665992 ATGAACTACCACATACGGATGTAT 57.334 37.500 14.23 7.46 44.82 2.29
618 619 7.770366 ATGAACTACCACATACGGATGTATA 57.230 36.000 14.23 8.27 44.82 1.47
619 620 7.770366 TGAACTACCACATACGGATGTATAT 57.230 36.000 14.23 4.37 44.82 0.86
620 621 8.866970 TGAACTACCACATACGGATGTATATA 57.133 34.615 14.23 5.36 44.82 0.86
621 622 8.953313 TGAACTACCACATACGGATGTATATAG 58.047 37.037 14.23 16.35 44.82 1.31
622 623 9.170734 GAACTACCACATACGGATGTATATAGA 57.829 37.037 22.62 5.04 44.82 1.98
623 624 8.503458 ACTACCACATACGGATGTATATAGAC 57.497 38.462 22.62 0.00 44.82 2.59
624 625 8.105197 ACTACCACATACGGATGTATATAGACA 58.895 37.037 22.62 2.07 44.82 3.41
625 626 7.956328 ACCACATACGGATGTATATAGACAT 57.044 36.000 14.23 12.70 44.82 3.06
627 628 9.642343 ACCACATACGGATGTATATAGACATAT 57.358 33.333 14.23 5.08 44.82 1.78
654 655 8.709386 TTAGAGTCTAGATTCACTCATTTTGC 57.291 34.615 16.67 0.00 41.43 3.68
655 656 6.945218 AGAGTCTAGATTCACTCATTTTGCT 58.055 36.000 16.67 0.00 41.43 3.91
656 657 7.393216 AGAGTCTAGATTCACTCATTTTGCTT 58.607 34.615 16.67 0.00 41.43 3.91
657 658 7.548780 AGAGTCTAGATTCACTCATTTTGCTTC 59.451 37.037 16.67 0.00 41.43 3.86
658 659 6.312426 AGTCTAGATTCACTCATTTTGCTTCG 59.688 38.462 0.00 0.00 0.00 3.79
659 660 6.091441 GTCTAGATTCACTCATTTTGCTTCGT 59.909 38.462 0.00 0.00 0.00 3.85
660 661 7.275779 GTCTAGATTCACTCATTTTGCTTCGTA 59.724 37.037 0.00 0.00 0.00 3.43
661 662 6.992063 AGATTCACTCATTTTGCTTCGTAT 57.008 33.333 0.00 0.00 0.00 3.06
662 663 6.779117 AGATTCACTCATTTTGCTTCGTATG 58.221 36.000 0.00 0.00 0.00 2.39
663 664 5.940192 TTCACTCATTTTGCTTCGTATGT 57.060 34.783 0.00 0.00 0.00 2.29
664 665 7.549134 AGATTCACTCATTTTGCTTCGTATGTA 59.451 33.333 0.00 0.00 0.00 2.29
665 666 7.428282 TTCACTCATTTTGCTTCGTATGTAA 57.572 32.000 0.00 0.00 0.00 2.41
666 667 7.609760 TCACTCATTTTGCTTCGTATGTAAT 57.390 32.000 0.00 0.00 0.00 1.89
667 668 7.684670 TCACTCATTTTGCTTCGTATGTAATC 58.315 34.615 0.00 0.00 0.00 1.75
668 669 7.333174 TCACTCATTTTGCTTCGTATGTAATCA 59.667 33.333 0.00 0.00 0.00 2.57
669 670 8.124823 CACTCATTTTGCTTCGTATGTAATCAT 58.875 33.333 0.00 0.00 38.00 2.45
670 671 8.677300 ACTCATTTTGCTTCGTATGTAATCATT 58.323 29.630 0.00 0.00 35.70 2.57
671 672 9.507280 CTCATTTTGCTTCGTATGTAATCATTT 57.493 29.630 0.00 0.00 35.70 2.32
672 673 9.288124 TCATTTTGCTTCGTATGTAATCATTTG 57.712 29.630 0.00 0.00 35.70 2.32
673 674 9.075519 CATTTTGCTTCGTATGTAATCATTTGT 57.924 29.630 0.00 0.00 35.70 2.83
674 675 9.638239 ATTTTGCTTCGTATGTAATCATTTGTT 57.362 25.926 0.00 0.00 35.70 2.83
675 676 8.446489 TTTGCTTCGTATGTAATCATTTGTTG 57.554 30.769 0.00 0.00 35.70 3.33
676 677 7.371126 TGCTTCGTATGTAATCATTTGTTGA 57.629 32.000 0.00 0.00 39.12 3.18
677 678 7.811653 TGCTTCGTATGTAATCATTTGTTGAA 58.188 30.769 0.00 0.00 38.03 2.69
678 679 8.293157 TGCTTCGTATGTAATCATTTGTTGAAA 58.707 29.630 0.00 0.00 38.03 2.69
679 680 9.289303 GCTTCGTATGTAATCATTTGTTGAAAT 57.711 29.630 0.00 0.00 38.03 2.17
712 713 8.842358 AAGACAAATATTTAAGAACGGAGTGA 57.158 30.769 0.00 0.00 45.00 3.41
713 714 8.842358 AGACAAATATTTAAGAACGGAGTGAA 57.158 30.769 0.00 0.00 45.00 3.18
714 715 9.280174 AGACAAATATTTAAGAACGGAGTGAAA 57.720 29.630 0.00 0.00 45.00 2.69
723 724 8.538409 TTAAGAACGGAGTGAAATAGTAAACC 57.462 34.615 0.00 0.00 45.00 3.27
724 725 6.356186 AGAACGGAGTGAAATAGTAAACCT 57.644 37.500 0.00 0.00 45.00 3.50
725 726 6.164176 AGAACGGAGTGAAATAGTAAACCTG 58.836 40.000 0.00 0.00 45.00 4.00
726 727 5.479124 ACGGAGTGAAATAGTAAACCTGT 57.521 39.130 0.00 0.00 42.51 4.00
727 728 6.594788 ACGGAGTGAAATAGTAAACCTGTA 57.405 37.500 0.00 0.00 42.51 2.74
728 729 6.996509 ACGGAGTGAAATAGTAAACCTGTAA 58.003 36.000 0.00 0.00 42.51 2.41
729 730 7.444299 ACGGAGTGAAATAGTAAACCTGTAAA 58.556 34.615 0.00 0.00 42.51 2.01
730 731 7.933033 ACGGAGTGAAATAGTAAACCTGTAAAA 59.067 33.333 0.00 0.00 42.51 1.52
731 732 8.776470 CGGAGTGAAATAGTAAACCTGTAAAAA 58.224 33.333 0.00 0.00 0.00 1.94
767 768 6.669485 AAAAAGATCACGTATTTTCGTTGC 57.331 33.333 0.00 0.00 42.27 4.17
768 769 5.607119 AAAGATCACGTATTTTCGTTGCT 57.393 34.783 0.00 0.00 42.27 3.91
769 770 4.584029 AGATCACGTATTTTCGTTGCTG 57.416 40.909 0.00 0.00 42.27 4.41
770 771 3.994392 AGATCACGTATTTTCGTTGCTGT 59.006 39.130 0.00 0.00 42.27 4.40
771 772 3.781341 TCACGTATTTTCGTTGCTGTC 57.219 42.857 0.00 0.00 42.27 3.51
772 773 3.124560 TCACGTATTTTCGTTGCTGTCA 58.875 40.909 0.00 0.00 42.27 3.58
773 774 3.060138 TCACGTATTTTCGTTGCTGTCAC 60.060 43.478 0.00 0.00 42.27 3.67
774 775 2.097104 ACGTATTTTCGTTGCTGTCACG 60.097 45.455 0.00 0.00 41.37 4.35
775 776 2.097104 CGTATTTTCGTTGCTGTCACGT 60.097 45.455 0.00 0.00 0.00 4.49
776 777 2.383298 ATTTTCGTTGCTGTCACGTG 57.617 45.000 9.94 9.94 0.00 4.49
777 778 0.247894 TTTTCGTTGCTGTCACGTGC 60.248 50.000 11.67 6.86 0.00 5.34
778 779 1.087202 TTTCGTTGCTGTCACGTGCT 61.087 50.000 11.67 0.00 0.00 4.40
779 780 1.487452 TTCGTTGCTGTCACGTGCTC 61.487 55.000 11.67 7.15 0.00 4.26
780 781 2.546321 GTTGCTGTCACGTGCTCG 59.454 61.111 11.67 6.63 43.34 5.03
781 782 1.949133 GTTGCTGTCACGTGCTCGA 60.949 57.895 16.04 0.00 40.62 4.04
1449 1472 3.199508 AGTGCAGCCTTAATCTCATGTCT 59.800 43.478 0.00 0.00 0.00 3.41
1483 1506 2.435059 GCAGGTTCGAGGAGTGCC 60.435 66.667 0.95 0.00 0.00 5.01
1635 1658 1.072965 GCCCATGAAATCTCTCCCGAT 59.927 52.381 0.00 0.00 0.00 4.18
1690 1713 1.683385 AGGGAAAACTTGCAGCTGAAC 59.317 47.619 20.43 0.12 0.00 3.18
1695 1718 2.475200 AACTTGCAGCTGAACGAAAC 57.525 45.000 20.43 0.00 0.00 2.78
1698 1721 3.138304 ACTTGCAGCTGAACGAAACATA 58.862 40.909 20.43 0.00 0.00 2.29
1821 1844 2.393764 CAAAATGTTGCGGAGAACCAC 58.606 47.619 0.00 0.00 35.59 4.16
2052 2084 6.127225 TGTCTTCATTATCTCCAGAAGGTCTG 60.127 42.308 0.00 0.00 43.91 3.51
2163 2195 2.093869 GGTCATTGCCATTGTCATGCTT 60.094 45.455 0.00 0.00 0.00 3.91
2166 2198 5.353938 GTCATTGCCATTGTCATGCTTATT 58.646 37.500 0.00 0.00 0.00 1.40
2264 2298 5.743872 GCTTTTCGCCAGAACCAATAAATAG 59.256 40.000 0.00 0.00 35.86 1.73
2437 2474 4.814771 CCGTGTATCCTAGAAATTGGGAAC 59.185 45.833 0.00 0.00 40.21 3.62
2444 2481 5.353938 TCCTAGAAATTGGGAACGAATACG 58.646 41.667 0.00 0.00 37.23 3.06
2673 2711 8.857694 ACATTTTCTCCCGACTAAAATTTAGA 57.142 30.769 18.55 0.00 32.05 2.10
2674 2712 9.292195 ACATTTTCTCCCGACTAAAATTTAGAA 57.708 29.630 18.55 0.72 32.05 2.10
2675 2713 9.556030 CATTTTCTCCCGACTAAAATTTAGAAC 57.444 33.333 18.55 10.90 32.05 3.01
2676 2714 6.956299 TTCTCCCGACTAAAATTTAGAACG 57.044 37.500 18.55 19.48 0.00 3.95
2718 2756 3.861797 CCCCAGGCGGCTCGTAAT 61.862 66.667 9.32 0.00 0.00 1.89
2758 2796 2.534903 GGCGCTAAACATCGGCCTC 61.535 63.158 7.64 0.00 40.59 4.70
2852 2908 1.660264 CGGCAAAACGGGACAAAGC 60.660 57.895 0.00 0.00 0.00 3.51
2948 3017 4.535526 AAAGAAAAACATAGGCCGCAAT 57.464 36.364 0.00 0.00 0.00 3.56
3111 3187 2.202311 CATCGCTGTCGTCGTCGT 60.202 61.111 1.33 0.00 38.33 4.34
3228 3304 3.372730 GCGCCCACTTCAATGCCA 61.373 61.111 0.00 0.00 0.00 4.92
3231 3307 1.907807 GCCCACTTCAATGCCACCA 60.908 57.895 0.00 0.00 0.00 4.17
3232 3308 1.966762 CCCACTTCAATGCCACCAC 59.033 57.895 0.00 0.00 0.00 4.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 8.655651 ATTTTGTTCGTGTTTCCATAAAATGT 57.344 26.923 0.00 0.00 0.00 2.71
7 8 8.703604 TTCAAATTTTGTTCGTGTTTCCATAA 57.296 26.923 8.89 0.00 0.00 1.90
9 10 7.784633 ATTCAAATTTTGTTCGTGTTTCCAT 57.215 28.000 8.89 0.00 0.00 3.41
10 11 8.879342 ATATTCAAATTTTGTTCGTGTTTCCA 57.121 26.923 8.89 0.00 0.00 3.53
55 56 9.996554 TCTTTGTCCTTTTCTTTTCTTCTTTTT 57.003 25.926 0.00 0.00 0.00 1.94
56 57 9.996554 TTCTTTGTCCTTTTCTTTTCTTCTTTT 57.003 25.926 0.00 0.00 0.00 2.27
57 58 9.996554 TTTCTTTGTCCTTTTCTTTTCTTCTTT 57.003 25.926 0.00 0.00 0.00 2.52
86 87 6.463360 TGTTTGCTTTCTTTCTCTGGTTTTT 58.537 32.000 0.00 0.00 0.00 1.94
87 88 6.036577 TGTTTGCTTTCTTTCTCTGGTTTT 57.963 33.333 0.00 0.00 0.00 2.43
88 89 5.418840 TCTGTTTGCTTTCTTTCTCTGGTTT 59.581 36.000 0.00 0.00 0.00 3.27
89 90 4.949856 TCTGTTTGCTTTCTTTCTCTGGTT 59.050 37.500 0.00 0.00 0.00 3.67
90 91 4.526970 TCTGTTTGCTTTCTTTCTCTGGT 58.473 39.130 0.00 0.00 0.00 4.00
91 92 5.505173 TTCTGTTTGCTTTCTTTCTCTGG 57.495 39.130 0.00 0.00 0.00 3.86
92 93 7.816945 TTTTTCTGTTTGCTTTCTTTCTCTG 57.183 32.000 0.00 0.00 0.00 3.35
93 94 8.253113 TGATTTTTCTGTTTGCTTTCTTTCTCT 58.747 29.630 0.00 0.00 0.00 3.10
94 95 8.411318 TGATTTTTCTGTTTGCTTTCTTTCTC 57.589 30.769 0.00 0.00 0.00 2.87
95 96 8.776376 TTGATTTTTCTGTTTGCTTTCTTTCT 57.224 26.923 0.00 0.00 0.00 2.52
96 97 9.824534 TTTTGATTTTTCTGTTTGCTTTCTTTC 57.175 25.926 0.00 0.00 0.00 2.62
185 186 9.809096 CTTTTTCCTTTCTTTTCTAGCTTTCTT 57.191 29.630 0.00 0.00 0.00 2.52
186 187 9.190317 TCTTTTTCCTTTCTTTTCTAGCTTTCT 57.810 29.630 0.00 0.00 0.00 2.52
187 188 9.457110 CTCTTTTTCCTTTCTTTTCTAGCTTTC 57.543 33.333 0.00 0.00 0.00 2.62
188 189 9.190317 TCTCTTTTTCCTTTCTTTTCTAGCTTT 57.810 29.630 0.00 0.00 0.00 3.51
189 190 8.753497 TCTCTTTTTCCTTTCTTTTCTAGCTT 57.247 30.769 0.00 0.00 0.00 3.74
190 191 8.753497 TTCTCTTTTTCCTTTCTTTTCTAGCT 57.247 30.769 0.00 0.00 0.00 3.32
191 192 9.239002 GTTTCTCTTTTTCCTTTCTTTTCTAGC 57.761 33.333 0.00 0.00 0.00 3.42
194 195 9.025041 TCTGTTTCTCTTTTTCCTTTCTTTTCT 57.975 29.630 0.00 0.00 0.00 2.52
195 196 9.639601 TTCTGTTTCTCTTTTTCCTTTCTTTTC 57.360 29.630 0.00 0.00 0.00 2.29
196 197 9.996554 TTTCTGTTTCTCTTTTTCCTTTCTTTT 57.003 25.926 0.00 0.00 0.00 2.27
197 198 9.996554 TTTTCTGTTTCTCTTTTTCCTTTCTTT 57.003 25.926 0.00 0.00 0.00 2.52
198 199 9.645059 CTTTTCTGTTTCTCTTTTTCCTTTCTT 57.355 29.630 0.00 0.00 0.00 2.52
199 200 8.253810 CCTTTTCTGTTTCTCTTTTTCCTTTCT 58.746 33.333 0.00 0.00 0.00 2.52
200 201 8.251026 TCCTTTTCTGTTTCTCTTTTTCCTTTC 58.749 33.333 0.00 0.00 0.00 2.62
201 202 8.134202 TCCTTTTCTGTTTCTCTTTTTCCTTT 57.866 30.769 0.00 0.00 0.00 3.11
202 203 7.718334 TCCTTTTCTGTTTCTCTTTTTCCTT 57.282 32.000 0.00 0.00 0.00 3.36
203 204 7.615757 TCTTCCTTTTCTGTTTCTCTTTTTCCT 59.384 33.333 0.00 0.00 0.00 3.36
204 205 7.772166 TCTTCCTTTTCTGTTTCTCTTTTTCC 58.228 34.615 0.00 0.00 0.00 3.13
205 206 9.295214 CTTCTTCCTTTTCTGTTTCTCTTTTTC 57.705 33.333 0.00 0.00 0.00 2.29
206 207 9.025041 TCTTCTTCCTTTTCTGTTTCTCTTTTT 57.975 29.630 0.00 0.00 0.00 1.94
207 208 8.581253 TCTTCTTCCTTTTCTGTTTCTCTTTT 57.419 30.769 0.00 0.00 0.00 2.27
208 209 8.581253 TTCTTCTTCCTTTTCTGTTTCTCTTT 57.419 30.769 0.00 0.00 0.00 2.52
209 210 8.049721 TCTTCTTCTTCCTTTTCTGTTTCTCTT 58.950 33.333 0.00 0.00 0.00 2.85
210 211 7.569240 TCTTCTTCTTCCTTTTCTGTTTCTCT 58.431 34.615 0.00 0.00 0.00 3.10
211 212 7.793927 TCTTCTTCTTCCTTTTCTGTTTCTC 57.206 36.000 0.00 0.00 0.00 2.87
212 213 8.581253 TTTCTTCTTCTTCCTTTTCTGTTTCT 57.419 30.769 0.00 0.00 0.00 2.52
213 214 7.918033 CCTTTCTTCTTCTTCCTTTTCTGTTTC 59.082 37.037 0.00 0.00 0.00 2.78
214 215 7.615757 TCCTTTCTTCTTCTTCCTTTTCTGTTT 59.384 33.333 0.00 0.00 0.00 2.83
215 216 7.119387 TCCTTTCTTCTTCTTCCTTTTCTGTT 58.881 34.615 0.00 0.00 0.00 3.16
216 217 6.663734 TCCTTTCTTCTTCTTCCTTTTCTGT 58.336 36.000 0.00 0.00 0.00 3.41
217 218 7.573968 TTCCTTTCTTCTTCTTCCTTTTCTG 57.426 36.000 0.00 0.00 0.00 3.02
218 219 8.595362 TTTTCCTTTCTTCTTCTTCCTTTTCT 57.405 30.769 0.00 0.00 0.00 2.52
219 220 9.307121 CTTTTTCCTTTCTTCTTCTTCCTTTTC 57.693 33.333 0.00 0.00 0.00 2.29
220 221 8.260818 CCTTTTTCCTTTCTTCTTCTTCCTTTT 58.739 33.333 0.00 0.00 0.00 2.27
221 222 7.619698 TCCTTTTTCCTTTCTTCTTCTTCCTTT 59.380 33.333 0.00 0.00 0.00 3.11
222 223 7.126061 TCCTTTTTCCTTTCTTCTTCTTCCTT 58.874 34.615 0.00 0.00 0.00 3.36
223 224 6.673583 TCCTTTTTCCTTTCTTCTTCTTCCT 58.326 36.000 0.00 0.00 0.00 3.36
224 225 6.961360 TCCTTTTTCCTTTCTTCTTCTTCC 57.039 37.500 0.00 0.00 0.00 3.46
225 226 7.432545 CGTTTCCTTTTTCCTTTCTTCTTCTTC 59.567 37.037 0.00 0.00 0.00 2.87
226 227 7.122204 TCGTTTCCTTTTTCCTTTCTTCTTCTT 59.878 33.333 0.00 0.00 0.00 2.52
227 228 6.602009 TCGTTTCCTTTTTCCTTTCTTCTTCT 59.398 34.615 0.00 0.00 0.00 2.85
228 229 6.792326 TCGTTTCCTTTTTCCTTTCTTCTTC 58.208 36.000 0.00 0.00 0.00 2.87
229 230 6.769134 TCGTTTCCTTTTTCCTTTCTTCTT 57.231 33.333 0.00 0.00 0.00 2.52
230 231 6.769134 TTCGTTTCCTTTTTCCTTTCTTCT 57.231 33.333 0.00 0.00 0.00 2.85
231 232 7.821595 TTTTCGTTTCCTTTTTCCTTTCTTC 57.178 32.000 0.00 0.00 0.00 2.87
273 274 4.855340 TCCCAACTCTGAACTCAGTTTTT 58.145 39.130 6.61 0.00 44.12 1.94
274 275 4.455606 CTCCCAACTCTGAACTCAGTTTT 58.544 43.478 6.61 0.00 44.12 2.43
275 276 3.745797 GCTCCCAACTCTGAACTCAGTTT 60.746 47.826 6.61 0.00 44.12 2.66
276 277 2.224402 GCTCCCAACTCTGAACTCAGTT 60.224 50.000 6.61 0.00 44.12 3.16
277 278 1.346068 GCTCCCAACTCTGAACTCAGT 59.654 52.381 6.61 0.00 44.12 3.41
278 279 1.345741 TGCTCCCAACTCTGAACTCAG 59.654 52.381 0.00 0.00 45.08 3.35
279 280 1.070758 GTGCTCCCAACTCTGAACTCA 59.929 52.381 0.00 0.00 0.00 3.41
280 281 1.346068 AGTGCTCCCAACTCTGAACTC 59.654 52.381 0.00 0.00 0.00 3.01
281 282 1.071385 CAGTGCTCCCAACTCTGAACT 59.929 52.381 0.00 0.00 31.82 3.01
282 283 1.517242 CAGTGCTCCCAACTCTGAAC 58.483 55.000 0.00 0.00 31.82 3.18
283 284 0.397941 CCAGTGCTCCCAACTCTGAA 59.602 55.000 0.00 0.00 31.82 3.02
284 285 0.471780 TCCAGTGCTCCCAACTCTGA 60.472 55.000 0.00 0.00 31.82 3.27
285 286 0.397941 TTCCAGTGCTCCCAACTCTG 59.602 55.000 0.00 0.00 0.00 3.35
286 287 0.398318 GTTCCAGTGCTCCCAACTCT 59.602 55.000 0.00 0.00 0.00 3.24
287 288 0.398318 AGTTCCAGTGCTCCCAACTC 59.602 55.000 0.00 0.00 0.00 3.01
288 289 0.109342 CAGTTCCAGTGCTCCCAACT 59.891 55.000 0.00 0.00 0.00 3.16
289 290 0.890996 CCAGTTCCAGTGCTCCCAAC 60.891 60.000 0.00 0.00 0.00 3.77
290 291 1.455849 CCAGTTCCAGTGCTCCCAA 59.544 57.895 0.00 0.00 0.00 4.12
291 292 2.528818 CCCAGTTCCAGTGCTCCCA 61.529 63.158 0.00 0.00 0.00 4.37
292 293 2.352805 CCCAGTTCCAGTGCTCCC 59.647 66.667 0.00 0.00 0.00 4.30
293 294 2.360475 GCCCAGTTCCAGTGCTCC 60.360 66.667 0.00 0.00 0.00 4.70
294 295 2.360475 GGCCCAGTTCCAGTGCTC 60.360 66.667 0.00 0.00 0.00 4.26
295 296 4.335647 CGGCCCAGTTCCAGTGCT 62.336 66.667 0.00 0.00 0.00 4.40
309 310 4.554036 GACAGGAGATGGGCCGGC 62.554 72.222 21.18 21.18 0.00 6.13
310 311 3.866582 GGACAGGAGATGGGCCGG 61.867 72.222 0.00 0.00 0.00 6.13
311 312 2.946988 TAGGGACAGGAGATGGGCCG 62.947 65.000 0.00 0.00 0.00 6.13
312 313 1.074471 TAGGGACAGGAGATGGGCC 60.074 63.158 0.00 0.00 0.00 5.80
313 314 1.763546 GCTAGGGACAGGAGATGGGC 61.764 65.000 0.00 0.00 0.00 5.36
314 315 0.399091 TGCTAGGGACAGGAGATGGG 60.399 60.000 0.00 0.00 0.00 4.00
315 316 1.347050 CATGCTAGGGACAGGAGATGG 59.653 57.143 0.00 0.00 0.00 3.51
316 317 1.270732 GCATGCTAGGGACAGGAGATG 60.271 57.143 11.37 0.00 0.00 2.90
317 318 1.055040 GCATGCTAGGGACAGGAGAT 58.945 55.000 11.37 0.00 0.00 2.75
318 319 0.031716 AGCATGCTAGGGACAGGAGA 60.032 55.000 21.21 0.00 0.00 3.71
319 320 0.835941 AAGCATGCTAGGGACAGGAG 59.164 55.000 23.00 0.00 0.00 3.69
320 321 0.833287 GAAGCATGCTAGGGACAGGA 59.167 55.000 23.00 0.00 0.00 3.86
321 322 0.179034 GGAAGCATGCTAGGGACAGG 60.179 60.000 23.00 0.00 0.00 4.00
322 323 0.179034 GGGAAGCATGCTAGGGACAG 60.179 60.000 23.00 0.00 0.00 3.51
323 324 1.635817 GGGGAAGCATGCTAGGGACA 61.636 60.000 23.00 0.00 0.00 4.02
324 325 1.149401 GGGGAAGCATGCTAGGGAC 59.851 63.158 23.00 9.76 0.00 4.46
325 326 1.004758 AGGGGAAGCATGCTAGGGA 59.995 57.895 23.00 0.00 0.00 4.20
326 327 1.150081 CAGGGGAAGCATGCTAGGG 59.850 63.158 23.00 4.00 0.00 3.53
327 328 0.465097 CACAGGGGAAGCATGCTAGG 60.465 60.000 23.00 9.40 0.00 3.02
328 329 1.099879 GCACAGGGGAAGCATGCTAG 61.100 60.000 23.00 9.39 33.44 3.42
329 330 1.077501 GCACAGGGGAAGCATGCTA 60.078 57.895 23.00 0.00 33.44 3.49
330 331 2.362120 GCACAGGGGAAGCATGCT 60.362 61.111 16.30 16.30 33.44 3.79
331 332 3.818787 CGCACAGGGGAAGCATGC 61.819 66.667 10.51 10.51 0.00 4.06
332 333 1.675310 TTCGCACAGGGGAAGCATG 60.675 57.895 0.00 0.00 40.59 4.06
333 334 2.756400 TTCGCACAGGGGAAGCAT 59.244 55.556 0.00 0.00 40.59 3.79
338 339 4.424711 GGGCATTCGCACAGGGGA 62.425 66.667 0.00 0.00 43.03 4.81
340 341 4.776322 TCGGGCATTCGCACAGGG 62.776 66.667 0.00 0.00 44.10 4.45
341 342 3.499737 GTCGGGCATTCGCACAGG 61.500 66.667 0.00 0.00 44.10 4.00
342 343 1.647545 ATTGTCGGGCATTCGCACAG 61.648 55.000 0.00 0.00 44.10 3.66
343 344 1.240641 AATTGTCGGGCATTCGCACA 61.241 50.000 0.00 0.00 44.10 4.57
344 345 0.523335 GAATTGTCGGGCATTCGCAC 60.523 55.000 0.00 0.00 41.24 5.34
345 346 1.800032 GAATTGTCGGGCATTCGCA 59.200 52.632 0.00 0.00 41.24 5.10
346 347 1.297598 CGAATTGTCGGGCATTCGC 60.298 57.895 11.90 0.00 43.81 4.70
347 348 4.974468 CGAATTGTCGGGCATTCG 57.026 55.556 10.89 10.89 43.81 3.34
371 372 1.087771 AAAACCCTATTCGCGGCTCG 61.088 55.000 6.13 0.00 40.15 5.03
372 373 0.656259 GAAAACCCTATTCGCGGCTC 59.344 55.000 6.13 0.00 0.00 4.70
373 374 0.746923 GGAAAACCCTATTCGCGGCT 60.747 55.000 6.13 0.00 0.00 5.52
374 375 1.721664 GGGAAAACCCTATTCGCGGC 61.722 60.000 6.13 0.00 34.51 6.53
375 376 0.393267 TGGGAAAACCCTATTCGCGG 60.393 55.000 6.13 0.00 41.21 6.46
376 377 1.675552 ATGGGAAAACCCTATTCGCG 58.324 50.000 0.00 0.00 41.21 5.87
377 378 2.552743 GCTATGGGAAAACCCTATTCGC 59.447 50.000 6.85 0.00 37.34 4.70
378 379 3.815401 CTGCTATGGGAAAACCCTATTCG 59.185 47.826 6.85 0.00 37.34 3.34
379 380 4.822350 GTCTGCTATGGGAAAACCCTATTC 59.178 45.833 6.85 0.00 37.34 1.75
380 381 4.686122 CGTCTGCTATGGGAAAACCCTATT 60.686 45.833 6.85 0.00 37.34 1.73
381 382 3.181454 CGTCTGCTATGGGAAAACCCTAT 60.181 47.826 6.85 2.09 39.66 2.57
382 383 2.169769 CGTCTGCTATGGGAAAACCCTA 59.830 50.000 6.85 0.00 39.07 3.53
383 384 1.065418 CGTCTGCTATGGGAAAACCCT 60.065 52.381 6.85 0.00 39.07 4.34
384 385 1.379527 CGTCTGCTATGGGAAAACCC 58.620 55.000 0.00 0.00 39.07 4.11
385 386 0.733150 GCGTCTGCTATGGGAAAACC 59.267 55.000 0.00 0.00 38.39 3.27
386 387 0.373716 CGCGTCTGCTATGGGAAAAC 59.626 55.000 0.00 0.00 39.65 2.43
387 388 0.742990 CCGCGTCTGCTATGGGAAAA 60.743 55.000 4.92 0.00 39.65 2.29
388 389 1.153449 CCGCGTCTGCTATGGGAAA 60.153 57.895 4.92 0.00 39.65 3.13
389 390 2.499205 CCGCGTCTGCTATGGGAA 59.501 61.111 4.92 0.00 39.65 3.97
390 391 4.221422 GCCGCGTCTGCTATGGGA 62.221 66.667 4.92 0.00 39.65 4.37
391 392 4.529219 TGCCGCGTCTGCTATGGG 62.529 66.667 4.92 0.00 39.65 4.00
392 393 2.511373 TTGCCGCGTCTGCTATGG 60.511 61.111 4.92 0.00 39.65 2.74
393 394 2.703409 GTTGCCGCGTCTGCTATG 59.297 61.111 4.92 0.00 39.65 2.23
394 395 2.511600 GGTTGCCGCGTCTGCTAT 60.512 61.111 4.92 0.00 39.65 2.97
405 406 1.611491 TGTTTTTGAGGATCGGTTGCC 59.389 47.619 0.00 0.00 38.61 4.52
406 407 3.575965 ATGTTTTTGAGGATCGGTTGC 57.424 42.857 0.00 0.00 38.61 4.17
407 408 6.087555 CGTTTTATGTTTTTGAGGATCGGTTG 59.912 38.462 0.00 0.00 38.61 3.77
408 409 6.146898 CGTTTTATGTTTTTGAGGATCGGTT 58.853 36.000 0.00 0.00 38.61 4.44
409 410 5.335348 CCGTTTTATGTTTTTGAGGATCGGT 60.335 40.000 0.00 0.00 38.61 4.69
410 411 5.092781 CCGTTTTATGTTTTTGAGGATCGG 58.907 41.667 0.00 0.00 38.61 4.18
411 412 5.793457 GTCCGTTTTATGTTTTTGAGGATCG 59.207 40.000 0.00 0.00 38.61 3.69
412 413 5.793457 CGTCCGTTTTATGTTTTTGAGGATC 59.207 40.000 0.00 0.00 0.00 3.36
413 414 5.695818 CGTCCGTTTTATGTTTTTGAGGAT 58.304 37.500 0.00 0.00 0.00 3.24
414 415 4.555116 GCGTCCGTTTTATGTTTTTGAGGA 60.555 41.667 0.00 0.00 0.00 3.71
415 416 3.666797 GCGTCCGTTTTATGTTTTTGAGG 59.333 43.478 0.00 0.00 0.00 3.86
416 417 3.356658 CGCGTCCGTTTTATGTTTTTGAG 59.643 43.478 0.00 0.00 0.00 3.02
417 418 3.002042 TCGCGTCCGTTTTATGTTTTTGA 59.998 39.130 5.77 0.00 35.54 2.69
418 419 3.289911 TCGCGTCCGTTTTATGTTTTTG 58.710 40.909 5.77 0.00 35.54 2.44
419 420 3.605743 TCGCGTCCGTTTTATGTTTTT 57.394 38.095 5.77 0.00 35.54 1.94
420 421 3.817148 ATCGCGTCCGTTTTATGTTTT 57.183 38.095 5.77 0.00 35.54 2.43
421 422 4.389687 AGTTATCGCGTCCGTTTTATGTTT 59.610 37.500 5.77 0.00 35.54 2.83
422 423 3.928375 AGTTATCGCGTCCGTTTTATGTT 59.072 39.130 5.77 0.00 35.54 2.71
423 424 3.514645 AGTTATCGCGTCCGTTTTATGT 58.485 40.909 5.77 0.00 35.54 2.29
424 425 4.373324 CGTAGTTATCGCGTCCGTTTTATG 60.373 45.833 5.77 0.00 35.54 1.90
425 426 3.725740 CGTAGTTATCGCGTCCGTTTTAT 59.274 43.478 5.77 0.00 35.54 1.40
426 427 3.097910 CGTAGTTATCGCGTCCGTTTTA 58.902 45.455 5.77 0.00 35.54 1.52
427 428 1.913403 CGTAGTTATCGCGTCCGTTTT 59.087 47.619 5.77 0.00 35.54 2.43
428 429 1.538276 CGTAGTTATCGCGTCCGTTT 58.462 50.000 5.77 0.00 35.54 3.60
429 430 0.248215 CCGTAGTTATCGCGTCCGTT 60.248 55.000 5.77 0.00 35.54 4.44
430 431 1.353103 CCGTAGTTATCGCGTCCGT 59.647 57.895 5.77 0.00 35.54 4.69
431 432 1.369689 CCCGTAGTTATCGCGTCCG 60.370 63.158 5.77 0.00 0.00 4.79
432 433 0.040603 CTCCCGTAGTTATCGCGTCC 60.041 60.000 5.77 0.00 0.00 4.79
433 434 0.659711 GCTCCCGTAGTTATCGCGTC 60.660 60.000 5.77 0.00 0.00 5.19
434 435 1.358046 GCTCCCGTAGTTATCGCGT 59.642 57.895 5.77 0.00 0.00 6.01
435 436 0.933509 GTGCTCCCGTAGTTATCGCG 60.934 60.000 0.00 0.00 0.00 5.87
436 437 0.101759 TGTGCTCCCGTAGTTATCGC 59.898 55.000 0.00 0.00 0.00 4.58
437 438 2.795175 ATGTGCTCCCGTAGTTATCG 57.205 50.000 0.00 0.00 0.00 2.92
438 439 3.979495 CGTTATGTGCTCCCGTAGTTATC 59.021 47.826 0.00 0.00 0.00 1.75
439 440 3.633525 TCGTTATGTGCTCCCGTAGTTAT 59.366 43.478 0.00 0.00 0.00 1.89
440 441 3.016031 TCGTTATGTGCTCCCGTAGTTA 58.984 45.455 0.00 0.00 0.00 2.24
441 442 1.820519 TCGTTATGTGCTCCCGTAGTT 59.179 47.619 0.00 0.00 0.00 2.24
442 443 1.466856 TCGTTATGTGCTCCCGTAGT 58.533 50.000 0.00 0.00 0.00 2.73
443 444 2.190981 GTTCGTTATGTGCTCCCGTAG 58.809 52.381 0.00 0.00 0.00 3.51
444 445 1.467883 CGTTCGTTATGTGCTCCCGTA 60.468 52.381 0.00 0.00 0.00 4.02
445 446 0.734942 CGTTCGTTATGTGCTCCCGT 60.735 55.000 0.00 0.00 0.00 5.28
446 447 1.995991 CGTTCGTTATGTGCTCCCG 59.004 57.895 0.00 0.00 0.00 5.14
447 448 1.713830 GCGTTCGTTATGTGCTCCC 59.286 57.895 0.00 0.00 0.00 4.30
448 449 1.343821 CGCGTTCGTTATGTGCTCC 59.656 57.895 0.00 0.00 0.00 4.70
449 450 1.295930 GCGCGTTCGTTATGTGCTC 60.296 57.895 8.43 0.00 44.18 4.26
450 451 2.736682 GGCGCGTTCGTTATGTGCT 61.737 57.895 8.43 0.00 46.26 4.40
451 452 2.276430 GGCGCGTTCGTTATGTGC 60.276 61.111 8.43 8.76 46.30 4.57
452 453 0.787908 GTTGGCGCGTTCGTTATGTG 60.788 55.000 8.43 0.00 38.14 3.21
453 454 0.947180 AGTTGGCGCGTTCGTTATGT 60.947 50.000 8.43 0.00 38.14 2.29
454 455 0.993532 TAGTTGGCGCGTTCGTTATG 59.006 50.000 8.43 0.00 38.14 1.90
455 456 0.994263 GTAGTTGGCGCGTTCGTTAT 59.006 50.000 8.43 0.00 38.14 1.89
456 457 0.318529 TGTAGTTGGCGCGTTCGTTA 60.319 50.000 8.43 0.00 38.14 3.18
457 458 1.554042 CTGTAGTTGGCGCGTTCGTT 61.554 55.000 8.43 0.00 38.14 3.85
458 459 2.019951 CTGTAGTTGGCGCGTTCGT 61.020 57.895 8.43 0.00 38.14 3.85
459 460 1.279527 TTCTGTAGTTGGCGCGTTCG 61.280 55.000 8.43 0.00 39.07 3.95
460 461 0.863144 TTTCTGTAGTTGGCGCGTTC 59.137 50.000 8.43 0.58 0.00 3.95
461 462 1.463444 GATTTCTGTAGTTGGCGCGTT 59.537 47.619 8.43 0.00 0.00 4.84
462 463 1.076332 GATTTCTGTAGTTGGCGCGT 58.924 50.000 8.43 0.00 0.00 6.01
463 464 1.075542 TGATTTCTGTAGTTGGCGCG 58.924 50.000 0.00 0.00 0.00 6.86
464 465 2.159517 CCTTGATTTCTGTAGTTGGCGC 60.160 50.000 0.00 0.00 0.00 6.53
465 466 2.420022 CCCTTGATTTCTGTAGTTGGCG 59.580 50.000 0.00 0.00 0.00 5.69
466 467 2.164422 GCCCTTGATTTCTGTAGTTGGC 59.836 50.000 0.00 0.00 0.00 4.52
467 468 3.690460 AGCCCTTGATTTCTGTAGTTGG 58.310 45.455 0.00 0.00 0.00 3.77
468 469 4.154918 GTGAGCCCTTGATTTCTGTAGTTG 59.845 45.833 0.00 0.00 0.00 3.16
469 470 4.202461 TGTGAGCCCTTGATTTCTGTAGTT 60.202 41.667 0.00 0.00 0.00 2.24
470 471 3.327757 TGTGAGCCCTTGATTTCTGTAGT 59.672 43.478 0.00 0.00 0.00 2.73
471 472 3.686726 GTGTGAGCCCTTGATTTCTGTAG 59.313 47.826 0.00 0.00 0.00 2.74
472 473 3.674997 GTGTGAGCCCTTGATTTCTGTA 58.325 45.455 0.00 0.00 0.00 2.74
473 474 2.508526 GTGTGAGCCCTTGATTTCTGT 58.491 47.619 0.00 0.00 0.00 3.41
474 475 1.466167 CGTGTGAGCCCTTGATTTCTG 59.534 52.381 0.00 0.00 0.00 3.02
475 476 1.347707 TCGTGTGAGCCCTTGATTTCT 59.652 47.619 0.00 0.00 0.00 2.52
476 477 1.808411 TCGTGTGAGCCCTTGATTTC 58.192 50.000 0.00 0.00 0.00 2.17
477 478 2.154462 CTTCGTGTGAGCCCTTGATTT 58.846 47.619 0.00 0.00 0.00 2.17
478 479 1.347707 TCTTCGTGTGAGCCCTTGATT 59.652 47.619 0.00 0.00 0.00 2.57
479 480 0.976641 TCTTCGTGTGAGCCCTTGAT 59.023 50.000 0.00 0.00 0.00 2.57
480 481 0.756294 TTCTTCGTGTGAGCCCTTGA 59.244 50.000 0.00 0.00 0.00 3.02
481 482 1.593196 TTTCTTCGTGTGAGCCCTTG 58.407 50.000 0.00 0.00 0.00 3.61
482 483 2.341846 TTTTCTTCGTGTGAGCCCTT 57.658 45.000 0.00 0.00 0.00 3.95
483 484 2.341846 TTTTTCTTCGTGTGAGCCCT 57.658 45.000 0.00 0.00 0.00 5.19
501 502 4.812626 ACCGTTTGATCTACTGTCGTTTTT 59.187 37.500 0.00 0.00 0.00 1.94
502 503 4.210537 CACCGTTTGATCTACTGTCGTTTT 59.789 41.667 0.00 0.00 0.00 2.43
503 504 3.739300 CACCGTTTGATCTACTGTCGTTT 59.261 43.478 0.00 0.00 0.00 3.60
504 505 3.005050 TCACCGTTTGATCTACTGTCGTT 59.995 43.478 0.00 0.00 0.00 3.85
505 506 2.555325 TCACCGTTTGATCTACTGTCGT 59.445 45.455 0.00 0.00 0.00 4.34
506 507 3.172050 CTCACCGTTTGATCTACTGTCG 58.828 50.000 0.00 0.00 32.17 4.35
507 508 3.512680 CCTCACCGTTTGATCTACTGTC 58.487 50.000 0.00 0.00 32.17 3.51
508 509 2.233922 CCCTCACCGTTTGATCTACTGT 59.766 50.000 0.00 0.00 32.17 3.55
509 510 2.496070 TCCCTCACCGTTTGATCTACTG 59.504 50.000 0.00 0.00 32.17 2.74
510 511 2.816411 TCCCTCACCGTTTGATCTACT 58.184 47.619 0.00 0.00 32.17 2.57
511 512 3.118738 ACATCCCTCACCGTTTGATCTAC 60.119 47.826 0.00 0.00 32.17 2.59
512 513 3.104512 ACATCCCTCACCGTTTGATCTA 58.895 45.455 0.00 0.00 32.17 1.98
513 514 1.909302 ACATCCCTCACCGTTTGATCT 59.091 47.619 0.00 0.00 32.17 2.75
514 515 2.009774 CACATCCCTCACCGTTTGATC 58.990 52.381 0.00 0.00 32.17 2.92
515 516 1.628340 TCACATCCCTCACCGTTTGAT 59.372 47.619 0.00 0.00 32.17 2.57
516 517 1.001974 CTCACATCCCTCACCGTTTGA 59.998 52.381 0.00 0.00 0.00 2.69
517 518 1.001974 TCTCACATCCCTCACCGTTTG 59.998 52.381 0.00 0.00 0.00 2.93
518 519 1.348064 TCTCACATCCCTCACCGTTT 58.652 50.000 0.00 0.00 0.00 3.60
519 520 1.573108 ATCTCACATCCCTCACCGTT 58.427 50.000 0.00 0.00 0.00 4.44
520 521 2.311463 CTATCTCACATCCCTCACCGT 58.689 52.381 0.00 0.00 0.00 4.83
521 522 1.000283 GCTATCTCACATCCCTCACCG 60.000 57.143 0.00 0.00 0.00 4.94
522 523 2.324541 AGCTATCTCACATCCCTCACC 58.675 52.381 0.00 0.00 0.00 4.02
523 524 5.736951 AATAGCTATCTCACATCCCTCAC 57.263 43.478 6.72 0.00 0.00 3.51
524 525 5.840693 TGAAATAGCTATCTCACATCCCTCA 59.159 40.000 5.61 0.00 0.00 3.86
525 526 6.162777 GTGAAATAGCTATCTCACATCCCTC 58.837 44.000 27.81 5.75 38.43 4.30
526 527 5.604231 TGTGAAATAGCTATCTCACATCCCT 59.396 40.000 30.37 0.51 42.36 4.20
527 528 5.858381 TGTGAAATAGCTATCTCACATCCC 58.142 41.667 30.37 11.84 42.36 3.85
532 533 8.026607 GGAGTAGATGTGAAATAGCTATCTCAC 58.973 40.741 26.61 26.61 38.91 3.51
533 534 7.177568 GGGAGTAGATGTGAAATAGCTATCTCA 59.822 40.741 5.61 5.61 31.19 3.27
534 535 7.396055 AGGGAGTAGATGTGAAATAGCTATCTC 59.604 40.741 6.72 2.99 31.19 2.75
535 536 7.245292 AGGGAGTAGATGTGAAATAGCTATCT 58.755 38.462 6.72 2.33 33.15 1.98
536 537 7.363443 GGAGGGAGTAGATGTGAAATAGCTATC 60.363 44.444 6.72 0.00 0.00 2.08
537 538 6.439058 GGAGGGAGTAGATGTGAAATAGCTAT 59.561 42.308 0.00 0.00 0.00 2.97
538 539 5.775701 GGAGGGAGTAGATGTGAAATAGCTA 59.224 44.000 0.00 0.00 0.00 3.32
539 540 4.591072 GGAGGGAGTAGATGTGAAATAGCT 59.409 45.833 0.00 0.00 0.00 3.32
540 541 4.559704 CGGAGGGAGTAGATGTGAAATAGC 60.560 50.000 0.00 0.00 0.00 2.97
541 542 4.585162 ACGGAGGGAGTAGATGTGAAATAG 59.415 45.833 0.00 0.00 0.00 1.73
542 543 4.543689 ACGGAGGGAGTAGATGTGAAATA 58.456 43.478 0.00 0.00 0.00 1.40
543 544 3.375699 ACGGAGGGAGTAGATGTGAAAT 58.624 45.455 0.00 0.00 0.00 2.17
544 545 2.816411 ACGGAGGGAGTAGATGTGAAA 58.184 47.619 0.00 0.00 0.00 2.69
545 546 2.526888 ACGGAGGGAGTAGATGTGAA 57.473 50.000 0.00 0.00 0.00 3.18
546 547 2.376109 GAACGGAGGGAGTAGATGTGA 58.624 52.381 0.00 0.00 0.00 3.58
547 548 1.409427 GGAACGGAGGGAGTAGATGTG 59.591 57.143 0.00 0.00 0.00 3.21
548 549 1.288335 AGGAACGGAGGGAGTAGATGT 59.712 52.381 0.00 0.00 0.00 3.06
549 550 2.074729 AGGAACGGAGGGAGTAGATG 57.925 55.000 0.00 0.00 0.00 2.90
550 551 3.967467 TTAGGAACGGAGGGAGTAGAT 57.033 47.619 0.00 0.00 0.00 1.98
551 552 3.744940 TTTAGGAACGGAGGGAGTAGA 57.255 47.619 0.00 0.00 0.00 2.59
552 553 5.539193 ACATATTTAGGAACGGAGGGAGTAG 59.461 44.000 0.00 0.00 0.00 2.57
553 554 5.461327 ACATATTTAGGAACGGAGGGAGTA 58.539 41.667 0.00 0.00 0.00 2.59
554 555 4.296056 ACATATTTAGGAACGGAGGGAGT 58.704 43.478 0.00 0.00 0.00 3.85
555 556 4.589374 AGACATATTTAGGAACGGAGGGAG 59.411 45.833 0.00 0.00 0.00 4.30
556 557 4.553678 AGACATATTTAGGAACGGAGGGA 58.446 43.478 0.00 0.00 0.00 4.20
557 558 4.957684 AGACATATTTAGGAACGGAGGG 57.042 45.455 0.00 0.00 0.00 4.30
558 559 7.625828 AAAAAGACATATTTAGGAACGGAGG 57.374 36.000 0.00 0.00 0.00 4.30
584 585 9.405587 CGTATGTGGTAGTTCATTTGAAATTTT 57.594 29.630 0.00 0.00 35.58 1.82
585 586 8.026607 CCGTATGTGGTAGTTCATTTGAAATTT 58.973 33.333 0.00 0.00 35.58 1.82
586 587 7.392113 TCCGTATGTGGTAGTTCATTTGAAATT 59.608 33.333 0.00 0.00 35.58 1.82
587 588 6.882140 TCCGTATGTGGTAGTTCATTTGAAAT 59.118 34.615 0.00 0.00 35.58 2.17
588 589 6.231951 TCCGTATGTGGTAGTTCATTTGAAA 58.768 36.000 0.00 0.00 35.58 2.69
589 590 5.795972 TCCGTATGTGGTAGTTCATTTGAA 58.204 37.500 0.00 0.00 0.00 2.69
590 591 5.408880 TCCGTATGTGGTAGTTCATTTGA 57.591 39.130 0.00 0.00 0.00 2.69
591 592 5.584649 ACATCCGTATGTGGTAGTTCATTTG 59.415 40.000 0.00 0.00 44.79 2.32
592 593 5.741011 ACATCCGTATGTGGTAGTTCATTT 58.259 37.500 0.00 0.00 44.79 2.32
593 594 5.353394 ACATCCGTATGTGGTAGTTCATT 57.647 39.130 0.00 0.00 44.79 2.57
594 595 6.665992 ATACATCCGTATGTGGTAGTTCAT 57.334 37.500 3.56 0.00 45.99 2.57
595 596 7.770366 ATATACATCCGTATGTGGTAGTTCA 57.230 36.000 3.56 0.00 45.99 3.18
596 597 9.170734 TCTATATACATCCGTATGTGGTAGTTC 57.829 37.037 3.56 0.00 45.99 3.01
597 598 8.954350 GTCTATATACATCCGTATGTGGTAGTT 58.046 37.037 3.56 0.00 45.99 2.24
598 599 8.105197 TGTCTATATACATCCGTATGTGGTAGT 58.895 37.037 3.56 0.00 45.99 2.73
599 600 8.502105 TGTCTATATACATCCGTATGTGGTAG 57.498 38.462 3.56 3.93 45.99 3.18
601 602 7.956328 ATGTCTATATACATCCGTATGTGGT 57.044 36.000 3.56 0.00 45.99 4.16
628 629 9.155975 GCAAAATGAGTGAATCTAGACTCTAAA 57.844 33.333 2.46 0.00 39.54 1.85
629 630 8.535335 AGCAAAATGAGTGAATCTAGACTCTAA 58.465 33.333 2.46 0.00 39.54 2.10
630 631 8.072321 AGCAAAATGAGTGAATCTAGACTCTA 57.928 34.615 2.46 0.00 39.54 2.43
631 632 6.945218 AGCAAAATGAGTGAATCTAGACTCT 58.055 36.000 2.46 0.00 39.54 3.24
632 633 7.463913 CGAAGCAAAATGAGTGAATCTAGACTC 60.464 40.741 0.00 0.00 39.31 3.36
633 634 6.312426 CGAAGCAAAATGAGTGAATCTAGACT 59.688 38.462 0.00 0.00 0.00 3.24
634 635 6.091441 ACGAAGCAAAATGAGTGAATCTAGAC 59.909 38.462 0.00 0.00 0.00 2.59
635 636 6.166279 ACGAAGCAAAATGAGTGAATCTAGA 58.834 36.000 0.00 0.00 0.00 2.43
636 637 6.414408 ACGAAGCAAAATGAGTGAATCTAG 57.586 37.500 0.00 0.00 0.00 2.43
637 638 7.549134 ACATACGAAGCAAAATGAGTGAATCTA 59.451 33.333 0.00 0.00 0.00 1.98
638 639 6.372659 ACATACGAAGCAAAATGAGTGAATCT 59.627 34.615 0.00 0.00 0.00 2.40
639 640 6.546395 ACATACGAAGCAAAATGAGTGAATC 58.454 36.000 0.00 0.00 0.00 2.52
640 641 6.500684 ACATACGAAGCAAAATGAGTGAAT 57.499 33.333 0.00 0.00 0.00 2.57
641 642 5.940192 ACATACGAAGCAAAATGAGTGAA 57.060 34.783 0.00 0.00 0.00 3.18
642 643 7.333174 TGATTACATACGAAGCAAAATGAGTGA 59.667 33.333 0.00 0.00 0.00 3.41
643 644 7.463544 TGATTACATACGAAGCAAAATGAGTG 58.536 34.615 0.00 0.00 0.00 3.51
644 645 7.609760 TGATTACATACGAAGCAAAATGAGT 57.390 32.000 0.00 0.00 0.00 3.41
645 646 9.507280 AAATGATTACATACGAAGCAAAATGAG 57.493 29.630 0.00 0.00 35.50 2.90
646 647 9.288124 CAAATGATTACATACGAAGCAAAATGA 57.712 29.630 0.00 0.00 35.50 2.57
647 648 9.075519 ACAAATGATTACATACGAAGCAAAATG 57.924 29.630 0.00 0.00 35.50 2.32
648 649 9.638239 AACAAATGATTACATACGAAGCAAAAT 57.362 25.926 0.00 0.00 35.50 1.82
649 650 8.910666 CAACAAATGATTACATACGAAGCAAAA 58.089 29.630 0.00 0.00 35.50 2.44
650 651 8.293157 TCAACAAATGATTACATACGAAGCAAA 58.707 29.630 0.00 0.00 35.50 3.68
651 652 7.811653 TCAACAAATGATTACATACGAAGCAA 58.188 30.769 0.00 0.00 35.50 3.91
652 653 7.371126 TCAACAAATGATTACATACGAAGCA 57.629 32.000 0.00 0.00 35.50 3.91
653 654 8.667987 TTTCAACAAATGATTACATACGAAGC 57.332 30.769 0.00 0.00 38.03 3.86
686 687 9.280174 TCACTCCGTTCTTAAATATTTGTCTTT 57.720 29.630 11.05 0.00 0.00 2.52
687 688 8.842358 TCACTCCGTTCTTAAATATTTGTCTT 57.158 30.769 11.05 0.00 0.00 3.01
688 689 8.842358 TTCACTCCGTTCTTAAATATTTGTCT 57.158 30.769 11.05 0.00 0.00 3.41
697 698 8.992073 GGTTTACTATTTCACTCCGTTCTTAAA 58.008 33.333 0.00 0.00 0.00 1.52
698 699 8.370182 AGGTTTACTATTTCACTCCGTTCTTAA 58.630 33.333 0.00 0.00 0.00 1.85
699 700 7.816031 CAGGTTTACTATTTCACTCCGTTCTTA 59.184 37.037 0.00 0.00 0.00 2.10
700 701 6.649557 CAGGTTTACTATTTCACTCCGTTCTT 59.350 38.462 0.00 0.00 0.00 2.52
701 702 6.164176 CAGGTTTACTATTTCACTCCGTTCT 58.836 40.000 0.00 0.00 0.00 3.01
702 703 5.930569 ACAGGTTTACTATTTCACTCCGTTC 59.069 40.000 0.00 0.00 0.00 3.95
703 704 5.861727 ACAGGTTTACTATTTCACTCCGTT 58.138 37.500 0.00 0.00 0.00 4.44
704 705 5.479124 ACAGGTTTACTATTTCACTCCGT 57.521 39.130 0.00 0.00 0.00 4.69
705 706 7.894376 TTTACAGGTTTACTATTTCACTCCG 57.106 36.000 0.00 0.00 0.00 4.63
744 745 6.359617 CAGCAACGAAAATACGTGATCTTTTT 59.640 34.615 0.00 0.00 45.83 1.94
745 746 5.851177 CAGCAACGAAAATACGTGATCTTTT 59.149 36.000 0.00 0.00 45.83 2.27
746 747 5.049680 ACAGCAACGAAAATACGTGATCTTT 60.050 36.000 0.00 0.00 45.83 2.52
747 748 4.451096 ACAGCAACGAAAATACGTGATCTT 59.549 37.500 0.00 0.00 45.83 2.40
748 749 3.994392 ACAGCAACGAAAATACGTGATCT 59.006 39.130 0.00 0.00 45.83 2.75
749 750 4.143200 TGACAGCAACGAAAATACGTGATC 60.143 41.667 0.00 0.00 45.83 2.92
750 751 3.743911 TGACAGCAACGAAAATACGTGAT 59.256 39.130 0.00 0.00 45.83 3.06
751 752 3.060138 GTGACAGCAACGAAAATACGTGA 60.060 43.478 0.00 0.00 45.83 4.35
752 753 3.215244 GTGACAGCAACGAAAATACGTG 58.785 45.455 0.00 0.00 45.83 4.49
754 755 2.097104 ACGTGACAGCAACGAAAATACG 60.097 45.455 2.62 0.00 39.31 3.06
755 756 3.215244 CACGTGACAGCAACGAAAATAC 58.785 45.455 10.90 0.00 0.00 1.89
756 757 2.349060 GCACGTGACAGCAACGAAAATA 60.349 45.455 22.23 0.00 0.00 1.40
757 758 1.596954 GCACGTGACAGCAACGAAAAT 60.597 47.619 22.23 0.00 0.00 1.82
758 759 0.247894 GCACGTGACAGCAACGAAAA 60.248 50.000 22.23 0.00 0.00 2.29
759 760 1.087202 AGCACGTGACAGCAACGAAA 61.087 50.000 22.23 0.00 0.00 3.46
760 761 1.487452 GAGCACGTGACAGCAACGAA 61.487 55.000 22.23 0.00 0.00 3.85
761 762 1.949133 GAGCACGTGACAGCAACGA 60.949 57.895 22.23 0.00 0.00 3.85
762 763 2.546321 GAGCACGTGACAGCAACG 59.454 61.111 22.23 0.00 0.00 4.10
763 764 1.487452 TTCGAGCACGTGACAGCAAC 61.487 55.000 22.23 0.00 40.69 4.17
764 765 0.599991 ATTCGAGCACGTGACAGCAA 60.600 50.000 22.23 4.77 40.69 3.91
765 766 1.006220 ATTCGAGCACGTGACAGCA 60.006 52.632 22.23 0.00 40.69 4.41
766 767 1.687494 GGATTCGAGCACGTGACAGC 61.687 60.000 22.23 3.01 40.69 4.40
767 768 1.406219 CGGATTCGAGCACGTGACAG 61.406 60.000 22.23 9.02 40.69 3.51
768 769 1.443702 CGGATTCGAGCACGTGACA 60.444 57.895 22.23 0.00 40.69 3.58
769 770 1.443872 ACGGATTCGAGCACGTGAC 60.444 57.895 22.23 10.94 38.24 3.67
770 771 2.959372 ACGGATTCGAGCACGTGA 59.041 55.556 22.23 0.00 38.24 4.35
772 773 1.443872 GACACGGATTCGAGCACGT 60.444 57.895 0.00 4.82 40.60 4.49
773 774 2.497092 CGACACGGATTCGAGCACG 61.497 63.158 0.00 0.00 38.85 5.34
774 775 3.374330 CGACACGGATTCGAGCAC 58.626 61.111 0.00 0.00 38.85 4.40
776 777 3.701604 AGCCGACACGGATTCGAGC 62.702 63.158 14.43 6.18 45.97 5.03
777 778 2.490217 AGCCGACACGGATTCGAG 59.510 61.111 14.43 0.00 45.97 4.04
1449 1472 2.432444 CTGCCCGATTTCAGGTAACAA 58.568 47.619 0.00 0.00 41.41 2.83
1483 1506 3.258622 AGAACCTCTGACCCTTCGTTTAG 59.741 47.826 0.00 0.00 0.00 1.85
1635 1658 3.159213 ACCTCAGCAATGGTTTCATCA 57.841 42.857 0.00 0.00 31.62 3.07
1698 1721 7.290014 ACCTCTTCAATAACAAATCCTTTTGGT 59.710 33.333 3.76 0.00 45.34 3.67
2052 2084 4.325119 CCATCCATCTCATCATTCTGTCC 58.675 47.826 0.00 0.00 0.00 4.02
2085 2117 2.754002 GGTTGCTACTTCTACTCCTCGT 59.246 50.000 0.00 0.00 0.00 4.18
2133 2165 2.365410 GGCAATGACCAAGCCCTTT 58.635 52.632 5.79 0.00 42.58 3.11
2163 2195 3.902218 CAGGAGGATCAAGGCCAAAATA 58.098 45.455 5.01 0.00 36.25 1.40
2166 2198 0.323725 GCAGGAGGATCAAGGCCAAA 60.324 55.000 5.01 0.00 36.25 3.28
2437 2474 4.387862 AGAACAAACAAGGCTACGTATTCG 59.612 41.667 0.00 0.00 43.34 3.34
2444 2481 5.646606 TGACAAAAGAACAAACAAGGCTAC 58.353 37.500 0.00 0.00 0.00 3.58
2657 2695 7.463780 GCTCTTACGTTCTAAATTTTAGTCGGG 60.464 40.741 24.35 18.23 0.00 5.14
2658 2696 7.062605 TGCTCTTACGTTCTAAATTTTAGTCGG 59.937 37.037 24.35 15.07 0.00 4.79
2659 2697 7.946043 TGCTCTTACGTTCTAAATTTTAGTCG 58.054 34.615 21.77 21.77 0.00 4.18
2660 2698 9.903185 GATGCTCTTACGTTCTAAATTTTAGTC 57.097 33.333 14.28 9.05 0.00 2.59
2661 2699 9.654663 AGATGCTCTTACGTTCTAAATTTTAGT 57.345 29.630 14.28 1.17 0.00 2.24
2663 2701 9.095065 GGAGATGCTCTTACGTTCTAAATTTTA 57.905 33.333 0.00 0.00 0.00 1.52
2664 2702 7.606456 TGGAGATGCTCTTACGTTCTAAATTTT 59.394 33.333 0.00 0.00 0.00 1.82
2665 2703 7.103641 TGGAGATGCTCTTACGTTCTAAATTT 58.896 34.615 0.00 0.00 0.00 1.82
2666 2704 6.640518 TGGAGATGCTCTTACGTTCTAAATT 58.359 36.000 0.00 0.00 0.00 1.82
2667 2705 6.222038 TGGAGATGCTCTTACGTTCTAAAT 57.778 37.500 0.00 0.00 0.00 1.40
2668 2706 5.651530 CTGGAGATGCTCTTACGTTCTAAA 58.348 41.667 0.00 0.00 0.00 1.85
2669 2707 4.440250 GCTGGAGATGCTCTTACGTTCTAA 60.440 45.833 0.00 0.00 0.00 2.10
2670 2708 3.066900 GCTGGAGATGCTCTTACGTTCTA 59.933 47.826 0.00 0.00 0.00 2.10
2671 2709 2.159170 GCTGGAGATGCTCTTACGTTCT 60.159 50.000 0.00 0.00 0.00 3.01
2672 2710 2.197577 GCTGGAGATGCTCTTACGTTC 58.802 52.381 0.00 0.00 0.00 3.95
2673 2711 1.134670 GGCTGGAGATGCTCTTACGTT 60.135 52.381 0.00 0.00 0.00 3.99
2674 2712 0.461961 GGCTGGAGATGCTCTTACGT 59.538 55.000 0.00 0.00 0.00 3.57
2675 2713 0.596083 CGGCTGGAGATGCTCTTACG 60.596 60.000 0.00 0.00 0.00 3.18
2676 2714 0.461961 ACGGCTGGAGATGCTCTTAC 59.538 55.000 0.00 0.00 0.00 2.34
2852 2908 1.003851 TCGCCGAATTTTAGCCGAAG 58.996 50.000 0.00 0.00 0.00 3.79
2876 2932 9.662947 AACTATTTAAGTCGCCTAAGTAATGTT 57.337 29.630 0.00 0.00 37.50 2.71
2930 2991 4.739195 TGTAATTGCGGCCTATGTTTTTC 58.261 39.130 0.00 0.00 0.00 2.29
2948 3017 1.735198 CGCGTTCTTCGGCCTGTAA 60.735 57.895 0.00 0.00 40.26 2.41
3002 3071 1.080974 GGACGACGATGACAACGGT 60.081 57.895 10.02 0.00 34.93 4.83
3111 3187 2.753043 GGGAGGCGTAGTCGTCCA 60.753 66.667 5.10 0.00 43.20 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.