Multiple sequence alignment - TraesCS6B01G021900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G021900 chr6B 100.000 3167 0 0 1 3167 13935083 13931917 0.000000e+00 5849.0
1 TraesCS6B01G021900 chr6B 90.380 2079 175 17 916 2976 14311028 14313099 0.000000e+00 2708.0
2 TraesCS6B01G021900 chr6B 87.773 1374 139 23 837 2195 14323358 14324717 0.000000e+00 1580.0
3 TraesCS6B01G021900 chr6B 87.007 1216 142 13 969 2175 54422299 54421091 0.000000e+00 1356.0
4 TraesCS6B01G021900 chr6B 86.083 1279 140 22 922 2195 54402939 54401694 0.000000e+00 1341.0
5 TraesCS6B01G021900 chr6B 86.371 1218 155 9 963 2175 14303254 14304465 0.000000e+00 1319.0
6 TraesCS6B01G021900 chr6B 84.603 1221 167 17 963 2175 39326105 39327312 0.000000e+00 1194.0
7 TraesCS6B01G021900 chr6B 84.242 495 62 11 2458 2949 14398507 14398026 4.780000e-128 468.0
8 TraesCS6B01G021900 chr6B 90.865 208 19 0 1 208 540455833 540456040 2.410000e-71 279.0
9 TraesCS6B01G021900 chr6B 90.865 208 19 0 1 208 560323586 560323379 2.410000e-71 279.0
10 TraesCS6B01G021900 chr6B 86.458 192 25 1 2977 3167 14313131 14313322 3.200000e-50 209.0
11 TraesCS6B01G021900 chr6D 86.469 1552 173 20 830 2367 7885580 7887108 0.000000e+00 1668.0
12 TraesCS6B01G021900 chr6D 81.421 1830 257 58 548 2347 7961443 7963219 0.000000e+00 1419.0
13 TraesCS6B01G021900 chr6D 97.450 549 12 2 2089 2636 7414889 7414342 0.000000e+00 935.0
14 TraesCS6B01G021900 chr6D 85.632 522 59 10 2458 2976 7887107 7887615 4.650000e-148 534.0
15 TraesCS6B01G021900 chr6D 76.821 302 56 9 208 507 315977112 315977401 1.180000e-34 158.0
16 TraesCS6B01G021900 chr4A 87.225 1229 145 7 949 2175 667379998 667381216 0.000000e+00 1389.0
17 TraesCS6B01G021900 chr4A 85.254 1336 173 18 836 2159 667425169 667426492 0.000000e+00 1354.0
18 TraesCS6B01G021900 chr2B 77.452 1193 226 33 1008 2183 54044008 54042842 0.000000e+00 673.0
19 TraesCS6B01G021900 chr2B 77.748 1101 219 19 1087 2174 89500031 89501118 0.000000e+00 652.0
20 TraesCS6B01G021900 chr2B 75.919 1142 231 33 1057 2174 800313239 800312118 2.150000e-151 545.0
21 TraesCS6B01G021900 chr6A 86.207 522 57 9 2458 2976 8171844 8172353 4.620000e-153 551.0
22 TraesCS6B01G021900 chr7A 91.262 206 18 0 1 206 386823415 386823620 6.690000e-72 281.0
23 TraesCS6B01G021900 chr7A 90.385 104 9 1 2360 2462 498588598 498588701 5.510000e-28 135.0
24 TraesCS6B01G021900 chr4D 90.909 209 19 0 1 209 276522511 276522719 6.690000e-72 281.0
25 TraesCS6B01G021900 chr4D 90.821 207 19 0 3 209 22224149 22224355 8.650000e-71 278.0
26 TraesCS6B01G021900 chr4D 77.287 317 57 8 208 520 51845231 51845536 4.200000e-39 172.0
27 TraesCS6B01G021900 chr4D 77.090 323 56 12 208 524 417415288 417415598 1.510000e-38 171.0
28 TraesCS6B01G021900 chr5D 90.865 208 19 0 1 208 234068154 234067947 2.410000e-71 279.0
29 TraesCS6B01G021900 chr5D 79.322 295 46 11 208 499 499087681 499087963 3.220000e-45 193.0
30 TraesCS6B01G021900 chr5D 78.498 293 53 6 208 499 10903005 10903288 1.940000e-42 183.0
31 TraesCS6B01G021900 chr7B 91.919 198 16 0 1 198 572298104 572298301 8.650000e-71 278.0
32 TraesCS6B01G021900 chr7B 78.033 305 54 9 229 531 666418748 666419041 2.510000e-41 180.0
33 TraesCS6B01G021900 chr7B 97.297 37 1 0 2417 2453 474407928 474407964 2.640000e-06 63.9
34 TraesCS6B01G021900 chr4B 90.385 208 20 0 1 208 511153632 511153425 1.120000e-69 274.0
35 TraesCS6B01G021900 chr3A 90.385 208 19 1 1 208 383734055 383733849 4.030000e-69 272.0
36 TraesCS6B01G021900 chr3A 78.221 326 55 10 208 529 693124744 693125057 8.960000e-46 195.0
37 TraesCS6B01G021900 chr2A 79.180 317 51 11 208 520 66767526 66767831 4.140000e-49 206.0
38 TraesCS6B01G021900 chr7D 78.025 314 56 9 208 518 628134825 628135128 5.390000e-43 185.0
39 TraesCS6B01G021900 chr7D 97.297 37 1 0 2417 2453 451971408 451971444 2.640000e-06 63.9
40 TraesCS6B01G021900 chr3B 87.368 95 12 0 2365 2459 412556553 412556647 3.340000e-20 110.0
41 TraesCS6B01G021900 chr2D 84.706 85 11 2 2376 2459 419045735 419045818 2.020000e-12 84.2
42 TraesCS6B01G021900 chr5A 91.667 48 3 1 2414 2460 293860741 293860694 7.330000e-07 65.8
43 TraesCS6B01G021900 chr5A 100.000 33 0 0 2430 2462 481940377 481940345 9.490000e-06 62.1
44 TraesCS6B01G021900 chr1D 94.595 37 2 0 456 492 383255769 383255733 1.230000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G021900 chr6B 13931917 13935083 3166 True 5849.0 5849 100.0000 1 3167 1 chr6B.!!$R1 3166
1 TraesCS6B01G021900 chr6B 14323358 14324717 1359 False 1580.0 1580 87.7730 837 2195 1 chr6B.!!$F2 1358
2 TraesCS6B01G021900 chr6B 14311028 14313322 2294 False 1458.5 2708 88.4190 916 3167 2 chr6B.!!$F5 2251
3 TraesCS6B01G021900 chr6B 54421091 54422299 1208 True 1356.0 1356 87.0070 969 2175 1 chr6B.!!$R4 1206
4 TraesCS6B01G021900 chr6B 54401694 54402939 1245 True 1341.0 1341 86.0830 922 2195 1 chr6B.!!$R3 1273
5 TraesCS6B01G021900 chr6B 14303254 14304465 1211 False 1319.0 1319 86.3710 963 2175 1 chr6B.!!$F1 1212
6 TraesCS6B01G021900 chr6B 39326105 39327312 1207 False 1194.0 1194 84.6030 963 2175 1 chr6B.!!$F3 1212
7 TraesCS6B01G021900 chr6D 7961443 7963219 1776 False 1419.0 1419 81.4210 548 2347 1 chr6D.!!$F1 1799
8 TraesCS6B01G021900 chr6D 7885580 7887615 2035 False 1101.0 1668 86.0505 830 2976 2 chr6D.!!$F3 2146
9 TraesCS6B01G021900 chr6D 7414342 7414889 547 True 935.0 935 97.4500 2089 2636 1 chr6D.!!$R1 547
10 TraesCS6B01G021900 chr4A 667379998 667381216 1218 False 1389.0 1389 87.2250 949 2175 1 chr4A.!!$F1 1226
11 TraesCS6B01G021900 chr4A 667425169 667426492 1323 False 1354.0 1354 85.2540 836 2159 1 chr4A.!!$F2 1323
12 TraesCS6B01G021900 chr2B 54042842 54044008 1166 True 673.0 673 77.4520 1008 2183 1 chr2B.!!$R1 1175
13 TraesCS6B01G021900 chr2B 89500031 89501118 1087 False 652.0 652 77.7480 1087 2174 1 chr2B.!!$F1 1087
14 TraesCS6B01G021900 chr2B 800312118 800313239 1121 True 545.0 545 75.9190 1057 2174 1 chr2B.!!$R2 1117
15 TraesCS6B01G021900 chr6A 8171844 8172353 509 False 551.0 551 86.2070 2458 2976 1 chr6A.!!$F1 518

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
93 94 0.032017 AGAGCCCCGAACCTGAGTAT 60.032 55.0 0.00 0.0 0.00 2.12 F
244 245 0.037326 TGCCGGAGACACATCTTCAC 60.037 55.0 5.05 0.0 34.34 3.18 F
423 424 0.041090 AAAAAGCCGGGATCCACCAT 59.959 50.0 15.23 0.0 41.20 3.55 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1544 1604 1.336240 GCTTGACATTGGGCTTGACAC 60.336 52.381 0.00 0.0 0.00 3.67 R
2063 2126 3.065371 GTGAGGGCATATGAACTTTTCCG 59.935 47.826 6.97 0.0 0.00 4.30 R
2267 2337 3.063997 CAGAGCGGATAACCAACATCAAC 59.936 47.826 0.00 0.0 35.59 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 3.172229 CTCTAGGAGCAAGCTTGTACC 57.828 52.381 26.55 25.96 0.00 3.34
25 26 1.831736 TCTAGGAGCAAGCTTGTACCC 59.168 52.381 26.55 22.44 0.00 3.69
26 27 1.834263 CTAGGAGCAAGCTTGTACCCT 59.166 52.381 26.55 26.93 0.00 4.34
27 28 0.615850 AGGAGCAAGCTTGTACCCTC 59.384 55.000 26.55 21.89 0.00 4.30
28 29 0.615850 GGAGCAAGCTTGTACCCTCT 59.384 55.000 26.55 14.30 0.00 3.69
29 30 1.831736 GGAGCAAGCTTGTACCCTCTA 59.168 52.381 26.55 0.00 0.00 2.43
30 31 2.418884 GGAGCAAGCTTGTACCCTCTAC 60.419 54.545 26.55 11.63 0.00 2.59
31 32 2.233922 GAGCAAGCTTGTACCCTCTACA 59.766 50.000 26.55 0.00 0.00 2.74
32 33 2.028020 AGCAAGCTTGTACCCTCTACAC 60.028 50.000 26.55 6.28 0.00 2.90
33 34 2.289444 GCAAGCTTGTACCCTCTACACA 60.289 50.000 26.55 0.00 0.00 3.72
34 35 3.619979 GCAAGCTTGTACCCTCTACACAT 60.620 47.826 26.55 0.00 0.00 3.21
35 36 4.382685 GCAAGCTTGTACCCTCTACACATA 60.383 45.833 26.55 0.00 0.00 2.29
36 37 5.730550 CAAGCTTGTACCCTCTACACATAA 58.269 41.667 18.65 0.00 0.00 1.90
37 38 6.170506 CAAGCTTGTACCCTCTACACATAAA 58.829 40.000 18.65 0.00 0.00 1.40
38 39 5.731591 AGCTTGTACCCTCTACACATAAAC 58.268 41.667 0.00 0.00 0.00 2.01
39 40 4.874396 GCTTGTACCCTCTACACATAAACC 59.126 45.833 0.00 0.00 0.00 3.27
40 41 5.570034 GCTTGTACCCTCTACACATAAACCA 60.570 44.000 0.00 0.00 0.00 3.67
41 42 5.410355 TGTACCCTCTACACATAAACCAC 57.590 43.478 0.00 0.00 0.00 4.16
42 43 4.839550 TGTACCCTCTACACATAAACCACA 59.160 41.667 0.00 0.00 0.00 4.17
43 44 4.281898 ACCCTCTACACATAAACCACAC 57.718 45.455 0.00 0.00 0.00 3.82
44 45 3.908103 ACCCTCTACACATAAACCACACT 59.092 43.478 0.00 0.00 0.00 3.55
45 46 4.020485 ACCCTCTACACATAAACCACACTC 60.020 45.833 0.00 0.00 0.00 3.51
46 47 4.174009 CCTCTACACATAAACCACACTCG 58.826 47.826 0.00 0.00 0.00 4.18
47 48 4.174009 CTCTACACATAAACCACACTCGG 58.826 47.826 0.00 0.00 0.00 4.63
48 49 2.922740 ACACATAAACCACACTCGGT 57.077 45.000 0.00 0.00 42.71 4.69
49 50 4.766373 TCTACACATAAACCACACTCGGTA 59.234 41.667 0.00 0.00 38.76 4.02
50 51 3.921677 ACACATAAACCACACTCGGTAG 58.078 45.455 0.00 0.00 38.76 3.18
51 52 3.259064 CACATAAACCACACTCGGTAGG 58.741 50.000 0.00 0.00 38.76 3.18
52 53 3.056393 CACATAAACCACACTCGGTAGGA 60.056 47.826 0.00 0.00 38.76 2.94
53 54 3.056322 ACATAAACCACACTCGGTAGGAC 60.056 47.826 0.00 0.00 38.76 3.85
54 55 1.713297 AAACCACACTCGGTAGGACT 58.287 50.000 0.00 0.00 38.76 3.85
55 56 2.592102 AACCACACTCGGTAGGACTA 57.408 50.000 0.00 0.00 38.76 2.59
56 57 2.125773 ACCACACTCGGTAGGACTAG 57.874 55.000 0.00 0.00 37.57 2.57
57 58 1.340795 ACCACACTCGGTAGGACTAGG 60.341 57.143 0.00 0.00 37.57 3.02
58 59 1.390565 CACACTCGGTAGGACTAGGG 58.609 60.000 0.00 0.00 0.00 3.53
59 60 0.258194 ACACTCGGTAGGACTAGGGG 59.742 60.000 0.00 0.00 0.00 4.79
60 61 0.258194 CACTCGGTAGGACTAGGGGT 59.742 60.000 0.00 0.00 0.00 4.95
61 62 1.492176 CACTCGGTAGGACTAGGGGTA 59.508 57.143 0.00 0.00 0.00 3.69
62 63 2.107901 CACTCGGTAGGACTAGGGGTAT 59.892 54.545 0.00 0.00 0.00 2.73
63 64 2.788215 ACTCGGTAGGACTAGGGGTATT 59.212 50.000 0.00 0.00 0.00 1.89
64 65 3.983410 ACTCGGTAGGACTAGGGGTATTA 59.017 47.826 0.00 0.00 0.00 0.98
65 66 4.605371 ACTCGGTAGGACTAGGGGTATTAT 59.395 45.833 0.00 0.00 0.00 1.28
66 67 5.184892 TCGGTAGGACTAGGGGTATTATC 57.815 47.826 0.00 0.00 0.00 1.75
67 68 4.854436 TCGGTAGGACTAGGGGTATTATCT 59.146 45.833 0.00 0.00 0.00 1.98
68 69 5.045286 TCGGTAGGACTAGGGGTATTATCTC 60.045 48.000 0.00 0.00 0.00 2.75
69 70 5.044993 CGGTAGGACTAGGGGTATTATCTCT 60.045 48.000 0.00 0.00 0.00 3.10
70 71 6.523844 CGGTAGGACTAGGGGTATTATCTCTT 60.524 46.154 0.00 0.00 0.00 2.85
71 72 6.891361 GGTAGGACTAGGGGTATTATCTCTTC 59.109 46.154 0.00 0.00 0.00 2.87
72 73 5.572252 AGGACTAGGGGTATTATCTCTTCG 58.428 45.833 0.00 0.00 0.00 3.79
73 74 4.705991 GGACTAGGGGTATTATCTCTTCGG 59.294 50.000 0.00 0.00 0.00 4.30
74 75 5.516238 GGACTAGGGGTATTATCTCTTCGGA 60.516 48.000 0.00 0.00 0.00 4.55
75 76 5.572252 ACTAGGGGTATTATCTCTTCGGAG 58.428 45.833 0.00 0.00 43.09 4.63
89 90 2.683933 GGAGAGCCCCGAACCTGA 60.684 66.667 0.00 0.00 0.00 3.86
90 91 2.726351 GGAGAGCCCCGAACCTGAG 61.726 68.421 0.00 0.00 0.00 3.35
91 92 1.985116 GAGAGCCCCGAACCTGAGT 60.985 63.158 0.00 0.00 0.00 3.41
92 93 0.683504 GAGAGCCCCGAACCTGAGTA 60.684 60.000 0.00 0.00 0.00 2.59
93 94 0.032017 AGAGCCCCGAACCTGAGTAT 60.032 55.000 0.00 0.00 0.00 2.12
94 95 0.105039 GAGCCCCGAACCTGAGTATG 59.895 60.000 0.00 0.00 0.00 2.39
95 96 0.617820 AGCCCCGAACCTGAGTATGT 60.618 55.000 0.00 0.00 0.00 2.29
96 97 0.179081 GCCCCGAACCTGAGTATGTC 60.179 60.000 0.00 0.00 0.00 3.06
97 98 1.486211 CCCCGAACCTGAGTATGTCT 58.514 55.000 0.00 0.00 0.00 3.41
98 99 1.831736 CCCCGAACCTGAGTATGTCTT 59.168 52.381 0.00 0.00 0.00 3.01
99 100 2.418746 CCCCGAACCTGAGTATGTCTTG 60.419 54.545 0.00 0.00 0.00 3.02
100 101 2.271800 CCGAACCTGAGTATGTCTTGC 58.728 52.381 0.00 0.00 0.00 4.01
101 102 1.920574 CGAACCTGAGTATGTCTTGCG 59.079 52.381 0.00 0.00 0.00 4.85
102 103 2.671351 CGAACCTGAGTATGTCTTGCGT 60.671 50.000 0.00 0.00 0.00 5.24
103 104 2.656560 ACCTGAGTATGTCTTGCGTC 57.343 50.000 0.00 0.00 0.00 5.19
104 105 1.204941 ACCTGAGTATGTCTTGCGTCC 59.795 52.381 0.00 0.00 0.00 4.79
105 106 1.471676 CCTGAGTATGTCTTGCGTCCC 60.472 57.143 0.00 0.00 0.00 4.46
106 107 1.478510 CTGAGTATGTCTTGCGTCCCT 59.521 52.381 0.00 0.00 0.00 4.20
107 108 1.476891 TGAGTATGTCTTGCGTCCCTC 59.523 52.381 0.00 0.00 0.00 4.30
108 109 0.456221 AGTATGTCTTGCGTCCCTCG 59.544 55.000 0.00 0.00 43.12 4.63
117 118 3.893763 CGTCCCTCGCTCGCTCAT 61.894 66.667 0.00 0.00 0.00 2.90
118 119 2.279120 GTCCCTCGCTCGCTCATG 60.279 66.667 0.00 0.00 0.00 3.07
119 120 2.755876 TCCCTCGCTCGCTCATGT 60.756 61.111 0.00 0.00 0.00 3.21
120 121 2.185350 CCCTCGCTCGCTCATGTT 59.815 61.111 0.00 0.00 0.00 2.71
121 122 2.169789 CCCTCGCTCGCTCATGTTG 61.170 63.158 0.00 0.00 0.00 3.33
122 123 1.153765 CCTCGCTCGCTCATGTTGA 60.154 57.895 0.00 0.00 0.00 3.18
123 124 1.416813 CCTCGCTCGCTCATGTTGAC 61.417 60.000 0.00 0.00 0.00 3.18
124 125 1.416813 CTCGCTCGCTCATGTTGACC 61.417 60.000 0.00 0.00 0.00 4.02
125 126 1.446792 CGCTCGCTCATGTTGACCT 60.447 57.895 0.00 0.00 0.00 3.85
126 127 1.416813 CGCTCGCTCATGTTGACCTC 61.417 60.000 0.00 0.00 0.00 3.85
127 128 1.416813 GCTCGCTCATGTTGACCTCG 61.417 60.000 0.00 0.00 0.00 4.63
128 129 1.416813 CTCGCTCATGTTGACCTCGC 61.417 60.000 0.00 0.00 0.00 5.03
129 130 2.456119 CGCTCATGTTGACCTCGCC 61.456 63.158 0.00 0.00 0.00 5.54
130 131 1.078848 GCTCATGTTGACCTCGCCT 60.079 57.895 0.00 0.00 0.00 5.52
131 132 1.086634 GCTCATGTTGACCTCGCCTC 61.087 60.000 0.00 0.00 0.00 4.70
132 133 0.534412 CTCATGTTGACCTCGCCTCT 59.466 55.000 0.00 0.00 0.00 3.69
133 134 0.247460 TCATGTTGACCTCGCCTCTG 59.753 55.000 0.00 0.00 0.00 3.35
134 135 0.742281 CATGTTGACCTCGCCTCTGG 60.742 60.000 0.00 0.00 0.00 3.86
135 136 0.904865 ATGTTGACCTCGCCTCTGGA 60.905 55.000 0.00 0.00 0.00 3.86
136 137 0.904865 TGTTGACCTCGCCTCTGGAT 60.905 55.000 0.00 0.00 0.00 3.41
137 138 0.179097 GTTGACCTCGCCTCTGGATC 60.179 60.000 0.00 0.00 0.00 3.36
138 139 1.330655 TTGACCTCGCCTCTGGATCC 61.331 60.000 4.20 4.20 0.00 3.36
139 140 1.456705 GACCTCGCCTCTGGATCCT 60.457 63.158 14.23 0.00 0.00 3.24
140 141 0.178987 GACCTCGCCTCTGGATCCTA 60.179 60.000 14.23 0.00 0.00 2.94
141 142 0.468400 ACCTCGCCTCTGGATCCTAC 60.468 60.000 14.23 0.00 0.00 3.18
142 143 1.182385 CCTCGCCTCTGGATCCTACC 61.182 65.000 14.23 0.00 0.00 3.18
143 144 1.519751 CTCGCCTCTGGATCCTACCG 61.520 65.000 14.23 8.68 0.00 4.02
144 145 2.565645 CGCCTCTGGATCCTACCGG 61.566 68.421 14.23 0.00 37.63 5.28
145 146 1.457831 GCCTCTGGATCCTACCGGT 60.458 63.158 13.98 13.98 37.55 5.28
146 147 1.749334 GCCTCTGGATCCTACCGGTG 61.749 65.000 19.93 7.24 37.55 4.94
147 148 1.742768 CTCTGGATCCTACCGGTGC 59.257 63.158 19.93 0.00 37.55 5.01
148 149 1.749334 CTCTGGATCCTACCGGTGCC 61.749 65.000 19.93 11.10 37.55 5.01
149 150 2.766651 TGGATCCTACCGGTGCCC 60.767 66.667 19.93 11.19 0.00 5.36
150 151 2.446036 GGATCCTACCGGTGCCCT 60.446 66.667 19.93 0.00 0.00 5.19
151 152 2.508751 GGATCCTACCGGTGCCCTC 61.509 68.421 19.93 8.89 0.00 4.30
152 153 2.838225 ATCCTACCGGTGCCCTCG 60.838 66.667 19.93 0.00 0.00 4.63
153 154 3.369410 ATCCTACCGGTGCCCTCGA 62.369 63.158 19.93 3.41 0.00 4.04
154 155 3.528370 CCTACCGGTGCCCTCGAG 61.528 72.222 19.93 5.13 0.00 4.04
155 156 4.208686 CTACCGGTGCCCTCGAGC 62.209 72.222 19.93 0.00 0.00 5.03
159 160 3.227276 CGGTGCCCTCGAGCCTAT 61.227 66.667 6.99 0.00 0.00 2.57
160 161 2.737830 GGTGCCCTCGAGCCTATC 59.262 66.667 6.99 0.00 0.00 2.08
161 162 2.737830 GTGCCCTCGAGCCTATCC 59.262 66.667 6.99 0.00 0.00 2.59
162 163 2.524394 TGCCCTCGAGCCTATCCC 60.524 66.667 6.99 0.00 0.00 3.85
163 164 2.203714 GCCCTCGAGCCTATCCCT 60.204 66.667 6.99 0.00 0.00 4.20
164 165 2.279810 GCCCTCGAGCCTATCCCTC 61.280 68.421 6.99 0.00 0.00 4.30
165 166 1.462928 CCCTCGAGCCTATCCCTCT 59.537 63.158 6.99 0.00 0.00 3.69
166 167 0.610785 CCCTCGAGCCTATCCCTCTC 60.611 65.000 6.99 0.00 0.00 3.20
167 168 0.404040 CCTCGAGCCTATCCCTCTCT 59.596 60.000 6.99 0.00 0.00 3.10
168 169 1.203001 CCTCGAGCCTATCCCTCTCTT 60.203 57.143 6.99 0.00 0.00 2.85
169 170 2.593026 CTCGAGCCTATCCCTCTCTTT 58.407 52.381 0.00 0.00 0.00 2.52
170 171 3.498841 CCTCGAGCCTATCCCTCTCTTTA 60.499 52.174 6.99 0.00 0.00 1.85
171 172 3.756434 CTCGAGCCTATCCCTCTCTTTAG 59.244 52.174 0.00 0.00 0.00 1.85
172 173 2.230266 CGAGCCTATCCCTCTCTTTAGC 59.770 54.545 0.00 0.00 0.00 3.09
173 174 2.565391 GAGCCTATCCCTCTCTTTAGCC 59.435 54.545 0.00 0.00 0.00 3.93
174 175 2.090494 AGCCTATCCCTCTCTTTAGCCA 60.090 50.000 0.00 0.00 0.00 4.75
175 176 2.909662 GCCTATCCCTCTCTTTAGCCAT 59.090 50.000 0.00 0.00 0.00 4.40
176 177 3.055458 GCCTATCCCTCTCTTTAGCCATC 60.055 52.174 0.00 0.00 0.00 3.51
177 178 4.163427 CCTATCCCTCTCTTTAGCCATCA 58.837 47.826 0.00 0.00 0.00 3.07
178 179 4.782156 CCTATCCCTCTCTTTAGCCATCAT 59.218 45.833 0.00 0.00 0.00 2.45
179 180 5.250313 CCTATCCCTCTCTTTAGCCATCATT 59.750 44.000 0.00 0.00 0.00 2.57
180 181 5.659849 ATCCCTCTCTTTAGCCATCATTT 57.340 39.130 0.00 0.00 0.00 2.32
181 182 4.785301 TCCCTCTCTTTAGCCATCATTTG 58.215 43.478 0.00 0.00 0.00 2.32
191 192 2.768833 CCATCATTTGGCATCTGACG 57.231 50.000 2.07 0.00 39.09 4.35
192 193 2.019249 CCATCATTTGGCATCTGACGT 58.981 47.619 0.00 0.00 39.09 4.34
193 194 2.223409 CCATCATTTGGCATCTGACGTG 60.223 50.000 0.00 0.00 39.09 4.49
194 195 0.804364 TCATTTGGCATCTGACGTGC 59.196 50.000 0.00 0.00 41.78 5.34
195 196 0.521867 CATTTGGCATCTGACGTGCG 60.522 55.000 0.00 0.00 43.40 5.34
196 197 2.257286 ATTTGGCATCTGACGTGCGC 62.257 55.000 0.00 0.00 43.40 6.09
200 201 3.490759 CATCTGACGTGCGCCCAC 61.491 66.667 4.18 0.00 38.62 4.61
201 202 3.695606 ATCTGACGTGCGCCCACT 61.696 61.111 4.18 0.00 39.86 4.00
202 203 2.348104 ATCTGACGTGCGCCCACTA 61.348 57.895 4.18 0.00 39.86 2.74
203 204 2.558554 ATCTGACGTGCGCCCACTAC 62.559 60.000 4.18 0.00 39.86 2.73
204 205 4.710695 TGACGTGCGCCCACTACG 62.711 66.667 14.69 14.69 42.98 3.51
205 206 4.409218 GACGTGCGCCCACTACGA 62.409 66.667 21.86 0.00 40.01 3.43
206 207 4.712425 ACGTGCGCCCACTACGAC 62.712 66.667 21.86 2.22 40.01 4.34
207 208 4.710695 CGTGCGCCCACTACGACA 62.711 66.667 11.33 0.00 40.01 4.35
208 209 2.125673 GTGCGCCCACTACGACAT 60.126 61.111 4.18 0.00 38.93 3.06
209 210 2.165301 GTGCGCCCACTACGACATC 61.165 63.158 4.18 0.00 38.93 3.06
210 211 2.585247 GCGCCCACTACGACATCC 60.585 66.667 0.00 0.00 0.00 3.51
211 212 2.889617 CGCCCACTACGACATCCA 59.110 61.111 0.00 0.00 0.00 3.41
212 213 1.518572 CGCCCACTACGACATCCAC 60.519 63.158 0.00 0.00 0.00 4.02
213 214 1.153429 GCCCACTACGACATCCACC 60.153 63.158 0.00 0.00 0.00 4.61
214 215 1.895020 GCCCACTACGACATCCACCA 61.895 60.000 0.00 0.00 0.00 4.17
215 216 0.611200 CCCACTACGACATCCACCAA 59.389 55.000 0.00 0.00 0.00 3.67
216 217 1.002659 CCCACTACGACATCCACCAAA 59.997 52.381 0.00 0.00 0.00 3.28
217 218 2.551287 CCCACTACGACATCCACCAAAA 60.551 50.000 0.00 0.00 0.00 2.44
218 219 3.142951 CCACTACGACATCCACCAAAAA 58.857 45.455 0.00 0.00 0.00 1.94
219 220 3.756434 CCACTACGACATCCACCAAAAAT 59.244 43.478 0.00 0.00 0.00 1.82
220 221 4.938832 CCACTACGACATCCACCAAAAATA 59.061 41.667 0.00 0.00 0.00 1.40
221 222 5.064707 CCACTACGACATCCACCAAAAATAG 59.935 44.000 0.00 0.00 0.00 1.73
222 223 5.872617 CACTACGACATCCACCAAAAATAGA 59.127 40.000 0.00 0.00 0.00 1.98
223 224 6.036083 CACTACGACATCCACCAAAAATAGAG 59.964 42.308 0.00 0.00 0.00 2.43
224 225 3.689649 ACGACATCCACCAAAAATAGAGC 59.310 43.478 0.00 0.00 0.00 4.09
225 226 3.941483 CGACATCCACCAAAAATAGAGCT 59.059 43.478 0.00 0.00 0.00 4.09
226 227 4.201851 CGACATCCACCAAAAATAGAGCTG 60.202 45.833 0.00 0.00 0.00 4.24
227 228 3.445096 ACATCCACCAAAAATAGAGCTGC 59.555 43.478 0.00 0.00 0.00 5.25
228 229 2.446435 TCCACCAAAAATAGAGCTGCC 58.554 47.619 0.00 0.00 0.00 4.85
229 230 1.133025 CCACCAAAAATAGAGCTGCCG 59.867 52.381 0.00 0.00 0.00 5.69
230 231 1.133025 CACCAAAAATAGAGCTGCCGG 59.867 52.381 0.00 0.00 0.00 6.13
231 232 1.004277 ACCAAAAATAGAGCTGCCGGA 59.996 47.619 5.05 0.00 0.00 5.14
232 233 1.672881 CCAAAAATAGAGCTGCCGGAG 59.327 52.381 5.05 0.10 0.00 4.63
233 234 2.632377 CAAAAATAGAGCTGCCGGAGA 58.368 47.619 5.05 0.00 0.00 3.71
234 235 2.317530 AAAATAGAGCTGCCGGAGAC 57.682 50.000 5.05 0.00 0.00 3.36
235 236 1.195115 AAATAGAGCTGCCGGAGACA 58.805 50.000 5.05 0.00 0.00 3.41
236 237 0.461961 AATAGAGCTGCCGGAGACAC 59.538 55.000 5.05 0.00 0.00 3.67
237 238 0.684479 ATAGAGCTGCCGGAGACACA 60.684 55.000 5.05 0.00 0.00 3.72
238 239 0.684479 TAGAGCTGCCGGAGACACAT 60.684 55.000 5.05 0.00 0.00 3.21
239 240 1.520342 GAGCTGCCGGAGACACATC 60.520 63.158 5.05 0.00 0.00 3.06
240 241 1.954362 GAGCTGCCGGAGACACATCT 61.954 60.000 5.05 0.00 38.15 2.90
241 242 1.078848 GCTGCCGGAGACACATCTT 60.079 57.895 5.05 0.00 34.34 2.40
242 243 1.086634 GCTGCCGGAGACACATCTTC 61.087 60.000 5.05 0.00 34.34 2.87
243 244 0.247460 CTGCCGGAGACACATCTTCA 59.753 55.000 5.05 0.00 34.34 3.02
244 245 0.037326 TGCCGGAGACACATCTTCAC 60.037 55.000 5.05 0.00 34.34 3.18
245 246 0.037326 GCCGGAGACACATCTTCACA 60.037 55.000 5.05 0.00 34.34 3.58
246 247 1.406069 GCCGGAGACACATCTTCACAT 60.406 52.381 5.05 0.00 34.34 3.21
247 248 2.274437 CCGGAGACACATCTTCACATG 58.726 52.381 0.00 0.00 34.34 3.21
248 249 2.354103 CCGGAGACACATCTTCACATGT 60.354 50.000 0.00 0.00 37.49 3.21
249 250 2.926200 CGGAGACACATCTTCACATGTC 59.074 50.000 0.00 0.00 41.47 3.06
250 251 3.265791 GGAGACACATCTTCACATGTCC 58.734 50.000 0.00 0.00 41.99 4.02
251 252 3.306989 GGAGACACATCTTCACATGTCCA 60.307 47.826 0.00 0.00 41.99 4.02
252 253 4.511527 GAGACACATCTTCACATGTCCAT 58.488 43.478 0.00 0.00 41.99 3.41
253 254 4.511527 AGACACATCTTCACATGTCCATC 58.488 43.478 0.00 0.00 41.99 3.51
254 255 3.264947 ACACATCTTCACATGTCCATCG 58.735 45.455 0.00 0.00 34.60 3.84
255 256 2.610833 CACATCTTCACATGTCCATCGG 59.389 50.000 0.00 0.00 34.60 4.18
256 257 2.237143 ACATCTTCACATGTCCATCGGT 59.763 45.455 0.00 0.00 30.76 4.69
257 258 2.385013 TCTTCACATGTCCATCGGTG 57.615 50.000 0.00 0.00 0.00 4.94
258 259 1.899142 TCTTCACATGTCCATCGGTGA 59.101 47.619 0.00 0.00 38.41 4.02
259 260 2.501316 TCTTCACATGTCCATCGGTGAT 59.499 45.455 0.00 0.00 39.73 3.06
260 261 2.314323 TCACATGTCCATCGGTGATG 57.686 50.000 0.00 0.00 39.52 3.07
261 262 1.830477 TCACATGTCCATCGGTGATGA 59.170 47.619 8.32 0.00 42.09 2.92
262 263 2.435437 TCACATGTCCATCGGTGATGAT 59.565 45.455 8.32 0.00 42.09 2.45
263 264 3.640967 TCACATGTCCATCGGTGATGATA 59.359 43.478 8.32 0.00 42.09 2.15
264 265 3.992427 CACATGTCCATCGGTGATGATAG 59.008 47.826 8.32 0.00 42.09 2.08
265 266 3.897505 ACATGTCCATCGGTGATGATAGA 59.102 43.478 8.32 0.00 42.09 1.98
266 267 4.021632 ACATGTCCATCGGTGATGATAGAG 60.022 45.833 8.32 0.00 42.09 2.43
267 268 2.893489 TGTCCATCGGTGATGATAGAGG 59.107 50.000 8.32 0.00 42.09 3.69
268 269 1.895798 TCCATCGGTGATGATAGAGGC 59.104 52.381 8.32 0.00 42.09 4.70
269 270 1.620323 CCATCGGTGATGATAGAGGCA 59.380 52.381 8.32 0.00 42.09 4.75
270 271 2.235650 CCATCGGTGATGATAGAGGCAT 59.764 50.000 8.32 0.00 42.09 4.40
271 272 3.519579 CATCGGTGATGATAGAGGCATC 58.480 50.000 0.45 0.00 42.09 3.91
276 277 1.620323 TGATGATAGAGGCATCACCGG 59.380 52.381 0.00 0.00 45.11 5.28
277 278 0.979665 ATGATAGAGGCATCACCGGG 59.020 55.000 6.32 0.00 46.52 5.73
278 279 1.121407 TGATAGAGGCATCACCGGGG 61.121 60.000 6.32 0.00 46.52 5.73
279 280 2.456287 GATAGAGGCATCACCGGGGC 62.456 65.000 6.32 3.45 46.52 5.80
293 294 4.176752 GGGCGGGGGCTAGACAAG 62.177 72.222 0.00 0.00 0.00 3.16
294 295 4.176752 GGCGGGGGCTAGACAAGG 62.177 72.222 0.00 0.00 0.00 3.61
295 296 3.081409 GCGGGGGCTAGACAAGGA 61.081 66.667 0.00 0.00 0.00 3.36
296 297 3.095347 GCGGGGGCTAGACAAGGAG 62.095 68.421 0.00 0.00 0.00 3.69
297 298 1.381327 CGGGGGCTAGACAAGGAGA 60.381 63.158 0.00 0.00 0.00 3.71
298 299 0.976073 CGGGGGCTAGACAAGGAGAA 60.976 60.000 0.00 0.00 0.00 2.87
299 300 0.542333 GGGGGCTAGACAAGGAGAAC 59.458 60.000 0.00 0.00 0.00 3.01
300 301 0.542333 GGGGCTAGACAAGGAGAACC 59.458 60.000 0.00 0.00 0.00 3.62
315 316 6.245890 AGGAGAACCTTATTCCATCTTCAG 57.754 41.667 0.00 0.00 45.36 3.02
316 317 5.131809 AGGAGAACCTTATTCCATCTTCAGG 59.868 44.000 0.00 0.00 45.36 3.86
317 318 5.372373 GAGAACCTTATTCCATCTTCAGGG 58.628 45.833 0.00 0.00 0.00 4.45
318 319 5.039645 AGAACCTTATTCCATCTTCAGGGA 58.960 41.667 0.00 0.00 0.00 4.20
319 320 5.131809 AGAACCTTATTCCATCTTCAGGGAG 59.868 44.000 0.00 0.00 34.02 4.30
320 321 3.137360 ACCTTATTCCATCTTCAGGGAGC 59.863 47.826 0.00 0.00 34.02 4.70
321 322 3.497584 CCTTATTCCATCTTCAGGGAGCC 60.498 52.174 0.00 0.00 34.02 4.70
322 323 0.471617 ATTCCATCTTCAGGGAGCCG 59.528 55.000 0.00 0.00 34.02 5.52
323 324 2.203126 CCATCTTCAGGGAGCCGC 60.203 66.667 0.00 0.00 0.00 6.53
324 325 2.203126 CATCTTCAGGGAGCCGCC 60.203 66.667 0.00 0.00 0.00 6.13
325 326 3.854669 ATCTTCAGGGAGCCGCCG 61.855 66.667 0.00 0.00 37.63 6.46
344 345 3.238260 GCATCGCGCCTACATGAG 58.762 61.111 0.00 0.00 32.94 2.90
345 346 2.947890 GCATCGCGCCTACATGAGC 61.948 63.158 0.00 0.00 32.94 4.26
346 347 1.592400 CATCGCGCCTACATGAGCA 60.592 57.895 0.00 0.00 0.00 4.26
347 348 1.143838 ATCGCGCCTACATGAGCAA 59.856 52.632 0.00 0.00 0.00 3.91
348 349 0.877649 ATCGCGCCTACATGAGCAAG 60.878 55.000 0.00 0.00 0.00 4.01
349 350 1.519234 CGCGCCTACATGAGCAAGA 60.519 57.895 0.00 0.00 0.00 3.02
350 351 1.756375 CGCGCCTACATGAGCAAGAC 61.756 60.000 0.00 0.00 0.00 3.01
351 352 0.740868 GCGCCTACATGAGCAAGACA 60.741 55.000 0.00 0.00 0.00 3.41
352 353 1.002366 CGCCTACATGAGCAAGACAC 58.998 55.000 0.00 0.00 0.00 3.67
353 354 1.672737 CGCCTACATGAGCAAGACACA 60.673 52.381 0.00 0.00 0.00 3.72
354 355 2.426522 GCCTACATGAGCAAGACACAA 58.573 47.619 0.00 0.00 0.00 3.33
355 356 2.813754 GCCTACATGAGCAAGACACAAA 59.186 45.455 0.00 0.00 0.00 2.83
356 357 3.441572 GCCTACATGAGCAAGACACAAAT 59.558 43.478 0.00 0.00 0.00 2.32
357 358 4.437930 GCCTACATGAGCAAGACACAAATC 60.438 45.833 0.00 0.00 0.00 2.17
358 359 4.940046 CCTACATGAGCAAGACACAAATCT 59.060 41.667 0.00 0.00 0.00 2.40
359 360 5.413833 CCTACATGAGCAAGACACAAATCTT 59.586 40.000 0.00 0.00 39.60 2.40
360 361 6.595326 CCTACATGAGCAAGACACAAATCTTA 59.405 38.462 0.00 0.00 36.78 2.10
361 362 6.882610 ACATGAGCAAGACACAAATCTTAA 57.117 33.333 0.00 0.00 36.78 1.85
362 363 6.672147 ACATGAGCAAGACACAAATCTTAAC 58.328 36.000 0.00 0.00 36.78 2.01
363 364 6.262944 ACATGAGCAAGACACAAATCTTAACA 59.737 34.615 0.00 0.00 36.78 2.41
364 365 6.882610 TGAGCAAGACACAAATCTTAACAT 57.117 33.333 0.00 0.00 36.78 2.71
365 366 7.977789 TGAGCAAGACACAAATCTTAACATA 57.022 32.000 0.00 0.00 36.78 2.29
366 367 8.389779 TGAGCAAGACACAAATCTTAACATAA 57.610 30.769 0.00 0.00 36.78 1.90
367 368 8.289618 TGAGCAAGACACAAATCTTAACATAAC 58.710 33.333 0.00 0.00 36.78 1.89
368 369 8.396272 AGCAAGACACAAATCTTAACATAACT 57.604 30.769 0.00 0.00 36.78 2.24
369 370 8.507249 AGCAAGACACAAATCTTAACATAACTC 58.493 33.333 0.00 0.00 36.78 3.01
370 371 8.289618 GCAAGACACAAATCTTAACATAACTCA 58.710 33.333 0.00 0.00 36.78 3.41
392 393 9.366216 ACTCAAAGAAACATCTAAAAACAAACC 57.634 29.630 0.00 0.00 0.00 3.27
393 394 8.710835 TCAAAGAAACATCTAAAAACAAACCC 57.289 30.769 0.00 0.00 0.00 4.11
394 395 8.536175 TCAAAGAAACATCTAAAAACAAACCCT 58.464 29.630 0.00 0.00 0.00 4.34
395 396 9.161629 CAAAGAAACATCTAAAAACAAACCCTT 57.838 29.630 0.00 0.00 0.00 3.95
396 397 9.733556 AAAGAAACATCTAAAAACAAACCCTTT 57.266 25.926 0.00 0.00 0.00 3.11
397 398 8.942338 AGAAACATCTAAAAACAAACCCTTTC 57.058 30.769 0.00 0.00 0.00 2.62
398 399 8.536175 AGAAACATCTAAAAACAAACCCTTTCA 58.464 29.630 0.00 0.00 0.00 2.69
399 400 8.487313 AAACATCTAAAAACAAACCCTTTCAC 57.513 30.769 0.00 0.00 0.00 3.18
400 401 7.418337 ACATCTAAAAACAAACCCTTTCACT 57.582 32.000 0.00 0.00 0.00 3.41
401 402 7.264947 ACATCTAAAAACAAACCCTTTCACTG 58.735 34.615 0.00 0.00 0.00 3.66
402 403 6.215495 TCTAAAAACAAACCCTTTCACTGG 57.785 37.500 0.00 0.00 0.00 4.00
403 404 2.979814 AAACAAACCCTTTCACTGGC 57.020 45.000 0.00 0.00 0.00 4.85
404 405 1.859302 AACAAACCCTTTCACTGGCA 58.141 45.000 0.00 0.00 0.00 4.92
405 406 1.859302 ACAAACCCTTTCACTGGCAA 58.141 45.000 0.00 0.00 0.00 4.52
406 407 2.183679 ACAAACCCTTTCACTGGCAAA 58.816 42.857 0.00 0.00 0.00 3.68
407 408 2.569404 ACAAACCCTTTCACTGGCAAAA 59.431 40.909 0.00 0.00 0.00 2.44
408 409 3.008485 ACAAACCCTTTCACTGGCAAAAA 59.992 39.130 0.00 0.00 0.00 1.94
409 410 3.541996 AACCCTTTCACTGGCAAAAAG 57.458 42.857 8.81 8.81 0.00 2.27
410 411 1.138859 ACCCTTTCACTGGCAAAAAGC 59.861 47.619 9.85 0.00 44.65 3.51
419 420 3.693411 GCAAAAAGCCGGGATCCA 58.307 55.556 15.23 0.00 37.23 3.41
420 421 1.215382 GCAAAAAGCCGGGATCCAC 59.785 57.895 15.23 1.96 37.23 4.02
421 422 1.890174 CAAAAAGCCGGGATCCACC 59.110 57.895 15.23 0.38 38.08 4.61
422 423 0.897863 CAAAAAGCCGGGATCCACCA 60.898 55.000 15.23 0.00 41.20 4.17
423 424 0.041090 AAAAAGCCGGGATCCACCAT 59.959 50.000 15.23 0.00 41.20 3.55
424 425 0.684153 AAAAGCCGGGATCCACCATG 60.684 55.000 15.23 0.00 41.20 3.66
425 426 1.863155 AAAGCCGGGATCCACCATGT 61.863 55.000 15.23 0.00 41.20 3.21
426 427 2.203209 GCCGGGATCCACCATGTC 60.203 66.667 15.23 0.00 41.20 3.06
427 428 2.746375 GCCGGGATCCACCATGTCT 61.746 63.158 15.23 0.00 41.20 3.41
428 429 1.447643 CCGGGATCCACCATGTCTC 59.552 63.158 15.23 0.00 41.20 3.36
429 430 1.447643 CGGGATCCACCATGTCTCC 59.552 63.158 15.23 0.00 41.20 3.71
430 431 1.337384 CGGGATCCACCATGTCTCCA 61.337 60.000 15.23 0.00 41.20 3.86
431 432 1.143813 GGGATCCACCATGTCTCCAT 58.856 55.000 15.23 0.00 41.20 3.41
432 433 1.202855 GGGATCCACCATGTCTCCATG 60.203 57.143 15.23 0.00 46.65 3.66
440 441 2.267174 CATGTCTCCATGGCCCTAAG 57.733 55.000 6.96 0.00 43.95 2.18
441 442 1.143813 ATGTCTCCATGGCCCTAAGG 58.856 55.000 6.96 0.00 0.00 2.69
451 452 4.153957 CCCTAAGGCCACCAGAGT 57.846 61.111 5.01 0.00 0.00 3.24
452 453 1.908483 CCCTAAGGCCACCAGAGTC 59.092 63.158 5.01 0.00 0.00 3.36
453 454 1.627297 CCCTAAGGCCACCAGAGTCC 61.627 65.000 5.01 0.00 0.00 3.85
454 455 1.517832 CTAAGGCCACCAGAGTCCG 59.482 63.158 5.01 0.00 0.00 4.79
455 456 0.970937 CTAAGGCCACCAGAGTCCGA 60.971 60.000 5.01 0.00 0.00 4.55
456 457 0.543410 TAAGGCCACCAGAGTCCGAA 60.543 55.000 5.01 0.00 0.00 4.30
457 458 1.831652 AAGGCCACCAGAGTCCGAAG 61.832 60.000 5.01 0.00 0.00 3.79
458 459 2.283529 GGCCACCAGAGTCCGAAGA 61.284 63.158 0.00 0.00 0.00 2.87
459 460 1.079750 GCCACCAGAGTCCGAAGAC 60.080 63.158 0.00 0.00 43.89 3.01
470 471 3.744719 CGAAGACGAGGCGGACCA 61.745 66.667 0.00 0.00 42.66 4.02
471 472 2.182030 GAAGACGAGGCGGACCAG 59.818 66.667 0.00 0.00 39.06 4.00
472 473 3.991536 GAAGACGAGGCGGACCAGC 62.992 68.421 0.00 0.00 39.06 4.85
497 498 3.702048 CCGACGGGAGGCAAAGGA 61.702 66.667 5.81 0.00 38.29 3.36
498 499 2.345991 CGACGGGAGGCAAAGGAA 59.654 61.111 0.00 0.00 38.29 3.36
499 500 1.741770 CGACGGGAGGCAAAGGAAG 60.742 63.158 0.00 0.00 38.29 3.46
500 501 1.375326 GACGGGAGGCAAAGGAAGT 59.625 57.895 0.00 0.00 38.26 3.01
501 502 0.673956 GACGGGAGGCAAAGGAAGTC 60.674 60.000 0.00 0.00 38.26 3.01
502 503 1.128188 ACGGGAGGCAAAGGAAGTCT 61.128 55.000 0.00 0.00 0.00 3.24
503 504 0.902531 CGGGAGGCAAAGGAAGTCTA 59.097 55.000 0.00 0.00 0.00 2.59
504 505 1.278127 CGGGAGGCAAAGGAAGTCTAA 59.722 52.381 0.00 0.00 0.00 2.10
505 506 2.092914 CGGGAGGCAAAGGAAGTCTAAT 60.093 50.000 0.00 0.00 0.00 1.73
506 507 3.622455 CGGGAGGCAAAGGAAGTCTAATT 60.622 47.826 0.00 0.00 0.00 1.40
507 508 4.344978 GGGAGGCAAAGGAAGTCTAATTT 58.655 43.478 0.00 0.00 0.00 1.82
508 509 4.772624 GGGAGGCAAAGGAAGTCTAATTTT 59.227 41.667 0.00 0.00 0.00 1.82
509 510 5.246203 GGGAGGCAAAGGAAGTCTAATTTTT 59.754 40.000 0.00 0.00 0.00 1.94
526 527 2.963599 TTTTTAGGGAGGAAGCGGTT 57.036 45.000 0.00 0.00 0.00 4.44
527 528 2.194201 TTTTAGGGAGGAAGCGGTTG 57.806 50.000 3.70 0.00 0.00 3.77
528 529 0.322187 TTTAGGGAGGAAGCGGTTGC 60.322 55.000 11.19 11.19 43.24 4.17
540 541 2.271821 GCGGTTGCGTATTGGATTTT 57.728 45.000 0.00 0.00 0.00 1.82
541 542 2.182014 GCGGTTGCGTATTGGATTTTC 58.818 47.619 0.00 0.00 0.00 2.29
542 543 2.414824 GCGGTTGCGTATTGGATTTTCA 60.415 45.455 0.00 0.00 0.00 2.69
543 544 3.733684 GCGGTTGCGTATTGGATTTTCAT 60.734 43.478 0.00 0.00 0.00 2.57
544 545 4.496673 GCGGTTGCGTATTGGATTTTCATA 60.497 41.667 0.00 0.00 0.00 2.15
545 546 5.574082 CGGTTGCGTATTGGATTTTCATAA 58.426 37.500 0.00 0.00 0.00 1.90
546 547 6.205784 CGGTTGCGTATTGGATTTTCATAAT 58.794 36.000 0.00 0.00 0.00 1.28
571 572 7.464830 AATAACTATACTTTGCTAGCACACG 57.535 36.000 19.17 11.10 0.00 4.49
572 573 4.451629 ACTATACTTTGCTAGCACACGT 57.548 40.909 19.17 16.37 0.00 4.49
573 574 4.174009 ACTATACTTTGCTAGCACACGTG 58.826 43.478 19.17 15.48 0.00 4.49
613 614 6.062434 ACGAAAACAATGGTCAAATACGAA 57.938 33.333 0.00 0.00 0.00 3.85
618 619 4.007659 ACAATGGTCAAATACGAACCTCC 58.992 43.478 0.00 0.00 34.05 4.30
619 620 4.261801 CAATGGTCAAATACGAACCTCCT 58.738 43.478 0.00 0.00 34.05 3.69
620 621 4.569719 ATGGTCAAATACGAACCTCCTT 57.430 40.909 0.00 0.00 34.05 3.36
632 633 4.250464 CGAACCTCCTTATTGTTGTAGCA 58.750 43.478 0.00 0.00 0.00 3.49
635 636 6.456988 CGAACCTCCTTATTGTTGTAGCAATC 60.457 42.308 0.00 0.00 39.50 2.67
636 637 5.193679 ACCTCCTTATTGTTGTAGCAATCC 58.806 41.667 0.00 0.00 39.50 3.01
637 638 4.580580 CCTCCTTATTGTTGTAGCAATCCC 59.419 45.833 0.00 0.00 39.50 3.85
644 645 2.224992 TGTTGTAGCAATCCCCACACAT 60.225 45.455 0.00 0.00 0.00 3.21
646 647 2.445427 TGTAGCAATCCCCACACATTG 58.555 47.619 0.00 0.00 33.77 2.82
665 666 3.980646 TGCGTGAAAATTGCTACTGTT 57.019 38.095 0.00 0.00 0.00 3.16
669 670 3.421888 CGTGAAAATTGCTACTGTTGCAC 59.578 43.478 16.15 5.74 40.40 4.57
670 671 4.610945 GTGAAAATTGCTACTGTTGCACT 58.389 39.130 16.15 8.73 40.40 4.40
673 675 4.916983 AAATTGCTACTGTTGCACTCAA 57.083 36.364 16.15 2.76 40.40 3.02
707 709 9.334693 CAATACAATAAAAGACTTTCACTCTGC 57.665 33.333 0.00 0.00 0.00 4.26
708 710 6.942532 ACAATAAAAGACTTTCACTCTGCA 57.057 33.333 0.00 0.00 0.00 4.41
709 711 7.516198 ACAATAAAAGACTTTCACTCTGCAT 57.484 32.000 0.00 0.00 0.00 3.96
712 714 9.713740 CAATAAAAGACTTTCACTCTGCATATC 57.286 33.333 0.00 0.00 0.00 1.63
713 715 9.453572 AATAAAAGACTTTCACTCTGCATATCA 57.546 29.630 0.00 0.00 0.00 2.15
714 716 6.981762 AAAGACTTTCACTCTGCATATCAG 57.018 37.500 0.00 0.00 44.21 2.90
715 717 5.674052 AGACTTTCACTCTGCATATCAGT 57.326 39.130 0.00 0.00 43.32 3.41
716 718 6.047511 AGACTTTCACTCTGCATATCAGTT 57.952 37.500 0.00 0.00 43.32 3.16
718 720 6.939163 AGACTTTCACTCTGCATATCAGTTTT 59.061 34.615 0.00 0.00 43.32 2.43
719 721 7.118971 AGACTTTCACTCTGCATATCAGTTTTC 59.881 37.037 0.00 0.00 43.32 2.29
722 724 5.550290 TCACTCTGCATATCAGTTTTCACA 58.450 37.500 0.00 0.00 43.32 3.58
723 725 5.997129 TCACTCTGCATATCAGTTTTCACAA 59.003 36.000 0.00 0.00 43.32 3.33
724 726 6.486320 TCACTCTGCATATCAGTTTTCACAAA 59.514 34.615 0.00 0.00 43.32 2.83
752 762 9.454859 AGATAAGAATAACTTTTTCTGACCTGG 57.545 33.333 0.00 0.00 39.72 4.45
756 766 7.694093 AGAATAACTTTTTCTGACCTGGAGAT 58.306 34.615 0.00 0.00 32.30 2.75
794 804 9.927668 AAAAAGAGAAGAAGAATTTTGTTGTGA 57.072 25.926 0.00 0.00 0.00 3.58
795 805 9.578439 AAAAGAGAAGAAGAATTTTGTTGTGAG 57.422 29.630 0.00 0.00 0.00 3.51
798 808 9.784531 AGAGAAGAAGAATTTTGTTGTGAGATA 57.215 29.630 0.00 0.00 0.00 1.98
809 819 9.807649 ATTTTGTTGTGAGATAATTATTCAGCC 57.192 29.630 0.00 0.00 0.00 4.85
810 820 7.936496 TTGTTGTGAGATAATTATTCAGCCA 57.064 32.000 0.00 0.00 0.00 4.75
811 821 7.936496 TGTTGTGAGATAATTATTCAGCCAA 57.064 32.000 0.00 5.06 0.00 4.52
812 822 7.988737 TGTTGTGAGATAATTATTCAGCCAAG 58.011 34.615 0.00 0.00 0.00 3.61
813 823 7.611467 TGTTGTGAGATAATTATTCAGCCAAGT 59.389 33.333 0.00 0.00 0.00 3.16
814 824 8.462016 GTTGTGAGATAATTATTCAGCCAAGTT 58.538 33.333 0.00 0.00 0.00 2.66
815 825 9.679661 TTGTGAGATAATTATTCAGCCAAGTTA 57.320 29.630 0.00 0.00 0.00 2.24
816 826 9.851686 TGTGAGATAATTATTCAGCCAAGTTAT 57.148 29.630 0.00 0.00 0.00 1.89
823 833 8.422577 AATTATTCAGCCAAGTTATTATCCCC 57.577 34.615 0.00 0.00 0.00 4.81
824 834 4.871871 TTCAGCCAAGTTATTATCCCCA 57.128 40.909 0.00 0.00 0.00 4.96
825 835 4.164843 TCAGCCAAGTTATTATCCCCAC 57.835 45.455 0.00 0.00 0.00 4.61
826 836 3.525609 TCAGCCAAGTTATTATCCCCACA 59.474 43.478 0.00 0.00 0.00 4.17
827 837 3.632145 CAGCCAAGTTATTATCCCCACAC 59.368 47.826 0.00 0.00 0.00 3.82
828 838 3.268334 AGCCAAGTTATTATCCCCACACA 59.732 43.478 0.00 0.00 0.00 3.72
851 861 0.322098 TGGTGGCCGTTGGATGTTAG 60.322 55.000 0.00 0.00 0.00 2.34
863 873 2.575735 TGGATGTTAGTTGGATGGCAGA 59.424 45.455 0.00 0.00 0.00 4.26
880 890 5.759059 TGGCAGAGATTGGATGATTACTTT 58.241 37.500 0.00 0.00 0.00 2.66
884 894 8.150945 GGCAGAGATTGGATGATTACTTTAGTA 58.849 37.037 0.00 0.00 0.00 1.82
895 905 6.341316 TGATTACTTTAGTAGCTCAGCCAAG 58.659 40.000 0.00 0.00 0.00 3.61
905 939 1.446907 CTCAGCCAAGTCACACCATC 58.553 55.000 0.00 0.00 0.00 3.51
906 940 0.764271 TCAGCCAAGTCACACCATCA 59.236 50.000 0.00 0.00 0.00 3.07
907 941 1.162698 CAGCCAAGTCACACCATCAG 58.837 55.000 0.00 0.00 0.00 2.90
957 1008 2.231380 ACTGGAATTCCCCACCGCT 61.231 57.895 21.90 0.00 34.29 5.52
1010 1063 3.842923 CGGCGTCATGCTCCTCCT 61.843 66.667 0.00 0.00 45.43 3.69
1217 1276 1.601171 CCAAGCTCTCCCACCTCAG 59.399 63.158 0.00 0.00 0.00 3.35
1402 1461 4.426112 CTGAGACTGCGCGCCTCA 62.426 66.667 28.52 28.52 35.81 3.86
1413 1472 2.510012 CGCCTCATCTCGCTTGCA 60.510 61.111 0.00 0.00 0.00 4.08
1536 1596 1.038130 GCTTCCTCTGCTCCGACCTA 61.038 60.000 0.00 0.00 0.00 3.08
1663 1723 2.126618 GGCGTGTCGTGACGATGA 60.127 61.111 12.08 0.00 42.10 2.92
1818 1881 1.095228 ATACCGAGGTTGGCATTGCG 61.095 55.000 0.00 0.00 0.00 4.85
1976 2039 4.537433 GCTCAGGCCCCGCTACTG 62.537 72.222 0.00 0.00 0.00 2.74
2063 2126 6.231211 TGATTAGGACTGAGAAGGTTTTCAC 58.769 40.000 0.00 0.00 35.70 3.18
2267 2337 5.049405 CCTGTTTCAGTGTACTTTGCCTAAG 60.049 44.000 0.00 0.00 39.87 2.18
2351 2426 7.934855 ACTGATAATTTGGATCCTGATATGC 57.065 36.000 14.23 0.00 0.00 3.14
2395 2470 6.868864 CCTCCGTCCTATAATACAAGATGTTG 59.131 42.308 0.13 0.13 39.82 3.33
2507 2582 3.127376 TGAACTTGTTCATCATCATGCCG 59.873 43.478 11.62 0.00 0.00 5.69
2515 2590 1.802337 ATCATCATGCCGTGCCATGC 61.802 55.000 0.00 0.00 41.77 4.06
2864 2943 2.897326 GGGTTGGAACAGGCTTACATTT 59.103 45.455 0.00 0.00 42.39 2.32
2876 2955 3.003378 GGCTTACATTTCTTATCGCCCAC 59.997 47.826 0.00 0.00 0.00 4.61
2881 2960 4.023291 ACATTTCTTATCGCCCACCAATT 58.977 39.130 0.00 0.00 0.00 2.32
2899 2978 7.175641 CCACCAATTTTCTATTATAGCCTGGAG 59.824 40.741 0.00 4.77 0.00 3.86
2943 3023 7.478520 TCTGCTGTAAAGTTTCTTAAGACAC 57.521 36.000 12.91 12.91 0.00 3.67
2982 3093 4.209080 GCTTACTGCACCACAAATTGTTTC 59.791 41.667 0.00 0.00 42.31 2.78
2992 3103 5.868801 ACCACAAATTGTTTCAGTGTTCTTG 59.131 36.000 0.00 0.00 0.00 3.02
3010 3122 1.679139 TGCCTGACAAGAGTTGGTTG 58.321 50.000 0.00 0.00 34.12 3.77
3017 3129 2.919228 ACAAGAGTTGGTTGTCAGGTC 58.081 47.619 0.00 0.00 32.53 3.85
3025 3137 1.628340 TGGTTGTCAGGTCTGGTATGG 59.372 52.381 0.00 0.00 0.00 2.74
3033 3145 1.218047 GTCTGGTATGGCTGTCGCA 59.782 57.895 0.00 0.00 38.10 5.10
3040 3152 0.033920 TATGGCTGTCGCATGCTAGG 59.966 55.000 17.13 0.00 38.10 3.02
3042 3154 1.450312 GGCTGTCGCATGCTAGGTT 60.450 57.895 17.13 0.00 38.10 3.50
3046 3158 0.391130 TGTCGCATGCTAGGTTGGTC 60.391 55.000 17.13 0.00 0.00 4.02
3055 3167 3.609853 TGCTAGGTTGGTCATTGCTAAG 58.390 45.455 0.00 0.00 30.86 2.18
3072 3184 6.775594 TGCTAAGACTTGATGAAGCTAGTA 57.224 37.500 8.08 0.00 31.68 1.82
3073 3185 7.170393 TGCTAAGACTTGATGAAGCTAGTAA 57.830 36.000 8.08 0.00 31.68 2.24
3074 3186 7.036220 TGCTAAGACTTGATGAAGCTAGTAAC 58.964 38.462 8.08 0.00 31.68 2.50
3076 3188 7.221838 GCTAAGACTTGATGAAGCTAGTAACTG 59.778 40.741 0.00 0.00 31.68 3.16
3083 3195 5.604231 TGATGAAGCTAGTAACTGGATCCAT 59.396 40.000 16.63 3.60 0.00 3.41
3086 3198 5.069648 TGAAGCTAGTAACTGGATCCATGAG 59.930 44.000 16.63 6.40 0.00 2.90
3088 3200 5.706447 AGCTAGTAACTGGATCCATGAGTA 58.294 41.667 16.63 9.56 0.00 2.59
3089 3201 6.318913 AGCTAGTAACTGGATCCATGAGTAT 58.681 40.000 16.63 2.87 0.00 2.12
3096 3208 9.593134 GTAACTGGATCCATGAGTATTCATATC 57.407 37.037 16.63 1.98 42.12 1.63
3102 3214 9.152327 GGATCCATGAGTATTCATATCTCCATA 57.848 37.037 6.95 0.00 42.12 2.74
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 2.159028 GGGTACAAGCTTGCTCCTAGAG 60.159 54.545 26.27 0.00 0.00 2.43
5 6 1.831736 GGGTACAAGCTTGCTCCTAGA 59.168 52.381 26.27 0.39 0.00 2.43
6 7 1.834263 AGGGTACAAGCTTGCTCCTAG 59.166 52.381 26.27 0.85 0.00 3.02
7 8 1.831736 GAGGGTACAAGCTTGCTCCTA 59.168 52.381 26.27 8.37 0.00 2.94
8 9 0.615850 GAGGGTACAAGCTTGCTCCT 59.384 55.000 26.27 26.13 0.00 3.69
9 10 0.615850 AGAGGGTACAAGCTTGCTCC 59.384 55.000 26.27 24.84 0.00 4.70
10 11 2.233922 TGTAGAGGGTACAAGCTTGCTC 59.766 50.000 26.27 21.84 0.00 4.26
11 12 2.028020 GTGTAGAGGGTACAAGCTTGCT 60.028 50.000 26.27 14.80 0.00 3.91
12 13 2.289444 TGTGTAGAGGGTACAAGCTTGC 60.289 50.000 26.27 10.86 0.00 4.01
13 14 3.678056 TGTGTAGAGGGTACAAGCTTG 57.322 47.619 24.84 24.84 0.00 4.01
14 15 6.171213 GTTTATGTGTAGAGGGTACAAGCTT 58.829 40.000 0.00 0.00 0.00 3.74
15 16 5.338137 GGTTTATGTGTAGAGGGTACAAGCT 60.338 44.000 0.00 0.00 0.00 3.74
16 17 4.874396 GGTTTATGTGTAGAGGGTACAAGC 59.126 45.833 0.00 0.00 0.00 4.01
17 18 5.873164 GTGGTTTATGTGTAGAGGGTACAAG 59.127 44.000 0.00 0.00 0.00 3.16
18 19 5.307456 TGTGGTTTATGTGTAGAGGGTACAA 59.693 40.000 0.00 0.00 0.00 2.41
19 20 4.839550 TGTGGTTTATGTGTAGAGGGTACA 59.160 41.667 0.00 0.00 0.00 2.90
20 21 5.046807 AGTGTGGTTTATGTGTAGAGGGTAC 60.047 44.000 0.00 0.00 0.00 3.34
21 22 5.088730 AGTGTGGTTTATGTGTAGAGGGTA 58.911 41.667 0.00 0.00 0.00 3.69
22 23 3.908103 AGTGTGGTTTATGTGTAGAGGGT 59.092 43.478 0.00 0.00 0.00 4.34
23 24 4.504858 GAGTGTGGTTTATGTGTAGAGGG 58.495 47.826 0.00 0.00 0.00 4.30
24 25 4.174009 CGAGTGTGGTTTATGTGTAGAGG 58.826 47.826 0.00 0.00 0.00 3.69
25 26 4.174009 CCGAGTGTGGTTTATGTGTAGAG 58.826 47.826 0.00 0.00 0.00 2.43
26 27 3.575256 ACCGAGTGTGGTTTATGTGTAGA 59.425 43.478 0.00 0.00 39.99 2.59
27 28 3.921677 ACCGAGTGTGGTTTATGTGTAG 58.078 45.455 0.00 0.00 39.99 2.74
28 29 4.082081 CCTACCGAGTGTGGTTTATGTGTA 60.082 45.833 0.00 0.00 43.56 2.90
29 30 2.922740 ACCGAGTGTGGTTTATGTGT 57.077 45.000 0.00 0.00 39.99 3.72
30 31 3.056393 TCCTACCGAGTGTGGTTTATGTG 60.056 47.826 0.00 0.00 43.56 3.21
31 32 3.056322 GTCCTACCGAGTGTGGTTTATGT 60.056 47.826 0.00 0.00 43.56 2.29
32 33 3.194968 AGTCCTACCGAGTGTGGTTTATG 59.805 47.826 0.00 0.00 43.56 1.90
33 34 3.438183 AGTCCTACCGAGTGTGGTTTAT 58.562 45.455 0.00 0.00 43.56 1.40
34 35 2.880443 AGTCCTACCGAGTGTGGTTTA 58.120 47.619 0.00 0.00 43.56 2.01
35 36 1.713297 AGTCCTACCGAGTGTGGTTT 58.287 50.000 0.00 0.00 43.56 3.27
36 37 2.444421 CTAGTCCTACCGAGTGTGGTT 58.556 52.381 0.00 0.00 43.56 3.67
37 38 1.340795 CCTAGTCCTACCGAGTGTGGT 60.341 57.143 0.00 0.00 46.26 4.16
38 39 1.390565 CCTAGTCCTACCGAGTGTGG 58.609 60.000 0.00 0.00 0.00 4.17
39 40 1.390565 CCCTAGTCCTACCGAGTGTG 58.609 60.000 0.00 0.00 0.00 3.82
40 41 0.258194 CCCCTAGTCCTACCGAGTGT 59.742 60.000 0.00 0.00 0.00 3.55
41 42 0.258194 ACCCCTAGTCCTACCGAGTG 59.742 60.000 0.00 0.00 0.00 3.51
42 43 1.898863 TACCCCTAGTCCTACCGAGT 58.101 55.000 0.00 0.00 0.00 4.18
43 44 3.522392 AATACCCCTAGTCCTACCGAG 57.478 52.381 0.00 0.00 0.00 4.63
44 45 4.854436 AGATAATACCCCTAGTCCTACCGA 59.146 45.833 0.00 0.00 0.00 4.69
45 46 5.044993 AGAGATAATACCCCTAGTCCTACCG 60.045 48.000 0.00 0.00 0.00 4.02
46 47 6.405872 AGAGATAATACCCCTAGTCCTACC 57.594 45.833 0.00 0.00 0.00 3.18
47 48 6.598850 CGAAGAGATAATACCCCTAGTCCTAC 59.401 46.154 0.00 0.00 0.00 3.18
48 49 6.296894 CCGAAGAGATAATACCCCTAGTCCTA 60.297 46.154 0.00 0.00 0.00 2.94
49 50 5.516945 CCGAAGAGATAATACCCCTAGTCCT 60.517 48.000 0.00 0.00 0.00 3.85
50 51 4.705991 CCGAAGAGATAATACCCCTAGTCC 59.294 50.000 0.00 0.00 0.00 3.85
51 52 5.568392 TCCGAAGAGATAATACCCCTAGTC 58.432 45.833 0.00 0.00 0.00 2.59
52 53 5.312708 TCTCCGAAGAGATAATACCCCTAGT 59.687 44.000 0.00 0.00 44.42 2.57
53 54 5.817784 TCTCCGAAGAGATAATACCCCTAG 58.182 45.833 0.00 0.00 44.42 3.02
54 55 5.855338 TCTCCGAAGAGATAATACCCCTA 57.145 43.478 0.00 0.00 44.42 3.53
55 56 4.743705 TCTCCGAAGAGATAATACCCCT 57.256 45.455 0.00 0.00 44.42 4.79
72 73 2.683933 TCAGGTTCGGGGCTCTCC 60.684 66.667 0.00 0.00 0.00 3.71
73 74 0.683504 TACTCAGGTTCGGGGCTCTC 60.684 60.000 0.00 0.00 0.00 3.20
74 75 0.032017 ATACTCAGGTTCGGGGCTCT 60.032 55.000 0.00 0.00 0.00 4.09
75 76 0.105039 CATACTCAGGTTCGGGGCTC 59.895 60.000 0.00 0.00 0.00 4.70
76 77 0.617820 ACATACTCAGGTTCGGGGCT 60.618 55.000 0.00 0.00 0.00 5.19
77 78 0.179081 GACATACTCAGGTTCGGGGC 60.179 60.000 0.00 0.00 0.00 5.80
78 79 1.486211 AGACATACTCAGGTTCGGGG 58.514 55.000 0.00 0.00 0.00 5.73
79 80 2.893637 CAAGACATACTCAGGTTCGGG 58.106 52.381 0.00 0.00 0.00 5.14
80 81 2.271800 GCAAGACATACTCAGGTTCGG 58.728 52.381 0.00 0.00 0.00 4.30
81 82 1.920574 CGCAAGACATACTCAGGTTCG 59.079 52.381 0.00 0.00 43.02 3.95
82 83 2.924290 GACGCAAGACATACTCAGGTTC 59.076 50.000 0.00 0.00 43.62 3.62
83 84 2.353803 GGACGCAAGACATACTCAGGTT 60.354 50.000 0.00 0.00 43.62 3.50
84 85 1.204941 GGACGCAAGACATACTCAGGT 59.795 52.381 0.00 0.00 43.62 4.00
85 86 1.471676 GGGACGCAAGACATACTCAGG 60.472 57.143 0.00 0.00 43.62 3.86
86 87 1.478510 AGGGACGCAAGACATACTCAG 59.521 52.381 0.00 0.00 43.62 3.35
87 88 1.476891 GAGGGACGCAAGACATACTCA 59.523 52.381 0.00 0.00 43.62 3.41
88 89 1.534175 CGAGGGACGCAAGACATACTC 60.534 57.143 0.00 0.00 43.62 2.59
89 90 0.456221 CGAGGGACGCAAGACATACT 59.544 55.000 0.00 0.00 43.62 2.12
90 91 2.959275 CGAGGGACGCAAGACATAC 58.041 57.895 0.00 0.00 43.62 2.39
100 101 3.893763 ATGAGCGAGCGAGGGACG 61.894 66.667 0.00 0.00 45.66 4.79
101 102 2.279120 CATGAGCGAGCGAGGGAC 60.279 66.667 0.00 0.00 0.00 4.46
102 103 2.351244 AACATGAGCGAGCGAGGGA 61.351 57.895 0.00 0.00 0.00 4.20
103 104 2.169789 CAACATGAGCGAGCGAGGG 61.170 63.158 0.00 0.00 0.00 4.30
104 105 1.153765 TCAACATGAGCGAGCGAGG 60.154 57.895 0.00 0.00 0.00 4.63
105 106 1.416813 GGTCAACATGAGCGAGCGAG 61.417 60.000 0.00 0.00 35.04 5.03
106 107 1.446099 GGTCAACATGAGCGAGCGA 60.446 57.895 0.00 0.00 35.04 4.93
107 108 3.084579 GGTCAACATGAGCGAGCG 58.915 61.111 0.00 0.00 35.04 5.03
112 113 1.078848 AGGCGAGGTCAACATGAGC 60.079 57.895 0.00 1.46 44.62 4.26
113 114 0.534412 AGAGGCGAGGTCAACATGAG 59.466 55.000 0.00 0.00 0.00 2.90
114 115 0.247460 CAGAGGCGAGGTCAACATGA 59.753 55.000 0.00 0.00 0.00 3.07
115 116 0.742281 CCAGAGGCGAGGTCAACATG 60.742 60.000 0.00 0.00 0.00 3.21
116 117 0.904865 TCCAGAGGCGAGGTCAACAT 60.905 55.000 0.00 0.00 0.00 2.71
117 118 0.904865 ATCCAGAGGCGAGGTCAACA 60.905 55.000 0.00 0.00 0.00 3.33
118 119 0.179097 GATCCAGAGGCGAGGTCAAC 60.179 60.000 0.00 0.00 0.00 3.18
119 120 1.330655 GGATCCAGAGGCGAGGTCAA 61.331 60.000 6.95 0.00 0.00 3.18
120 121 1.758514 GGATCCAGAGGCGAGGTCA 60.759 63.158 6.95 0.00 0.00 4.02
121 122 0.178987 TAGGATCCAGAGGCGAGGTC 60.179 60.000 15.82 0.00 0.00 3.85
122 123 0.468400 GTAGGATCCAGAGGCGAGGT 60.468 60.000 15.82 0.00 0.00 3.85
123 124 1.182385 GGTAGGATCCAGAGGCGAGG 61.182 65.000 15.82 0.00 0.00 4.63
124 125 1.519751 CGGTAGGATCCAGAGGCGAG 61.520 65.000 15.82 0.00 0.00 5.03
125 126 1.528542 CGGTAGGATCCAGAGGCGA 60.529 63.158 15.82 0.00 0.00 5.54
126 127 2.565645 CCGGTAGGATCCAGAGGCG 61.566 68.421 15.82 0.00 41.02 5.52
127 128 1.457831 ACCGGTAGGATCCAGAGGC 60.458 63.158 15.82 0.00 41.02 4.70
128 129 1.749334 GCACCGGTAGGATCCAGAGG 61.749 65.000 15.82 13.66 41.02 3.69
129 130 1.742768 GCACCGGTAGGATCCAGAG 59.257 63.158 15.82 1.95 41.02 3.35
130 131 1.760875 GGCACCGGTAGGATCCAGA 60.761 63.158 15.82 0.00 41.02 3.86
131 132 2.808206 GGGCACCGGTAGGATCCAG 61.808 68.421 15.82 1.96 40.86 3.86
132 133 2.766651 GGGCACCGGTAGGATCCA 60.767 66.667 15.82 0.00 40.86 3.41
144 145 2.737830 GGATAGGCTCGAGGGCAC 59.262 66.667 15.58 0.00 43.56 5.01
145 146 2.524394 GGGATAGGCTCGAGGGCA 60.524 66.667 15.58 0.00 43.56 5.36
146 147 2.203714 AGGGATAGGCTCGAGGGC 60.204 66.667 15.58 7.43 41.20 5.19
147 148 0.610785 GAGAGGGATAGGCTCGAGGG 60.611 65.000 15.58 0.00 0.00 4.30
148 149 0.404040 AGAGAGGGATAGGCTCGAGG 59.596 60.000 15.58 0.00 33.98 4.63
149 150 2.286365 AAGAGAGGGATAGGCTCGAG 57.714 55.000 8.45 8.45 33.98 4.04
150 151 2.757894 AAAGAGAGGGATAGGCTCGA 57.242 50.000 0.00 0.00 33.98 4.04
151 152 2.230266 GCTAAAGAGAGGGATAGGCTCG 59.770 54.545 0.00 0.00 33.98 5.03
152 153 2.565391 GGCTAAAGAGAGGGATAGGCTC 59.435 54.545 0.00 0.00 37.79 4.70
153 154 2.090494 TGGCTAAAGAGAGGGATAGGCT 60.090 50.000 0.00 0.00 40.47 4.58
154 155 2.330216 TGGCTAAAGAGAGGGATAGGC 58.670 52.381 0.00 0.00 40.30 3.93
155 156 4.163427 TGATGGCTAAAGAGAGGGATAGG 58.837 47.826 0.00 0.00 0.00 2.57
156 157 6.371595 AATGATGGCTAAAGAGAGGGATAG 57.628 41.667 0.00 0.00 0.00 2.08
157 158 6.466326 CCAAATGATGGCTAAAGAGAGGGATA 60.466 42.308 0.00 0.00 43.80 2.59
158 159 5.383476 CAAATGATGGCTAAAGAGAGGGAT 58.617 41.667 0.00 0.00 0.00 3.85
159 160 4.385643 CCAAATGATGGCTAAAGAGAGGGA 60.386 45.833 0.00 0.00 43.80 4.20
160 161 3.887716 CCAAATGATGGCTAAAGAGAGGG 59.112 47.826 0.00 0.00 43.80 4.30
173 174 2.793585 GCACGTCAGATGCCAAATGATG 60.794 50.000 0.00 1.40 37.08 3.07
174 175 1.402968 GCACGTCAGATGCCAAATGAT 59.597 47.619 0.00 0.00 37.08 2.45
175 176 0.804364 GCACGTCAGATGCCAAATGA 59.196 50.000 0.00 0.00 37.08 2.57
176 177 0.521867 CGCACGTCAGATGCCAAATG 60.522 55.000 0.00 0.00 40.09 2.32
177 178 1.796151 CGCACGTCAGATGCCAAAT 59.204 52.632 0.00 0.00 40.09 2.32
178 179 2.965147 GCGCACGTCAGATGCCAAA 61.965 57.895 0.30 0.00 40.09 3.28
179 180 3.422303 GCGCACGTCAGATGCCAA 61.422 61.111 0.30 0.00 40.09 4.52
183 184 2.557059 TAGTGGGCGCACGTCAGATG 62.557 60.000 25.95 0.00 0.00 2.90
184 185 2.348104 TAGTGGGCGCACGTCAGAT 61.348 57.895 25.95 11.73 0.00 2.90
185 186 2.986979 TAGTGGGCGCACGTCAGA 60.987 61.111 25.95 9.37 0.00 3.27
186 187 2.809601 GTAGTGGGCGCACGTCAG 60.810 66.667 25.95 0.00 0.00 3.51
187 188 4.710695 CGTAGTGGGCGCACGTCA 62.711 66.667 25.95 13.90 0.00 4.35
188 189 4.409218 TCGTAGTGGGCGCACGTC 62.409 66.667 25.95 20.69 37.02 4.34
189 190 4.712425 GTCGTAGTGGGCGCACGT 62.712 66.667 25.95 17.20 37.02 4.49
190 191 3.982372 ATGTCGTAGTGGGCGCACG 62.982 63.158 25.95 16.01 37.03 5.34
191 192 2.125673 ATGTCGTAGTGGGCGCAC 60.126 61.111 25.22 25.22 0.00 5.34
192 193 2.183300 GATGTCGTAGTGGGCGCA 59.817 61.111 10.83 0.00 0.00 6.09
193 194 2.585247 GGATGTCGTAGTGGGCGC 60.585 66.667 0.00 0.00 0.00 6.53
194 195 1.518572 GTGGATGTCGTAGTGGGCG 60.519 63.158 0.00 0.00 0.00 6.13
195 196 1.153429 GGTGGATGTCGTAGTGGGC 60.153 63.158 0.00 0.00 0.00 5.36
196 197 0.611200 TTGGTGGATGTCGTAGTGGG 59.389 55.000 0.00 0.00 0.00 4.61
197 198 2.465860 TTTGGTGGATGTCGTAGTGG 57.534 50.000 0.00 0.00 0.00 4.00
198 199 5.872617 TCTATTTTTGGTGGATGTCGTAGTG 59.127 40.000 0.00 0.00 0.00 2.74
199 200 6.045072 TCTATTTTTGGTGGATGTCGTAGT 57.955 37.500 0.00 0.00 0.00 2.73
200 201 5.006746 GCTCTATTTTTGGTGGATGTCGTAG 59.993 44.000 0.00 0.00 0.00 3.51
201 202 4.873827 GCTCTATTTTTGGTGGATGTCGTA 59.126 41.667 0.00 0.00 0.00 3.43
202 203 3.689649 GCTCTATTTTTGGTGGATGTCGT 59.310 43.478 0.00 0.00 0.00 4.34
203 204 3.941483 AGCTCTATTTTTGGTGGATGTCG 59.059 43.478 0.00 0.00 0.00 4.35
204 205 4.439289 GCAGCTCTATTTTTGGTGGATGTC 60.439 45.833 0.00 0.00 0.00 3.06
205 206 3.445096 GCAGCTCTATTTTTGGTGGATGT 59.555 43.478 0.00 0.00 0.00 3.06
206 207 3.181483 GGCAGCTCTATTTTTGGTGGATG 60.181 47.826 0.00 0.00 0.00 3.51
207 208 3.026694 GGCAGCTCTATTTTTGGTGGAT 58.973 45.455 0.00 0.00 0.00 3.41
208 209 2.446435 GGCAGCTCTATTTTTGGTGGA 58.554 47.619 0.00 0.00 0.00 4.02
209 210 1.133025 CGGCAGCTCTATTTTTGGTGG 59.867 52.381 0.00 0.00 0.00 4.61
210 211 1.133025 CCGGCAGCTCTATTTTTGGTG 59.867 52.381 0.00 0.00 0.00 4.17
211 212 1.004277 TCCGGCAGCTCTATTTTTGGT 59.996 47.619 0.00 0.00 0.00 3.67
212 213 1.672881 CTCCGGCAGCTCTATTTTTGG 59.327 52.381 0.00 0.00 0.00 3.28
213 214 2.352960 GTCTCCGGCAGCTCTATTTTTG 59.647 50.000 0.00 0.00 0.00 2.44
214 215 2.027192 TGTCTCCGGCAGCTCTATTTTT 60.027 45.455 0.00 0.00 0.00 1.94
215 216 1.555075 TGTCTCCGGCAGCTCTATTTT 59.445 47.619 0.00 0.00 0.00 1.82
216 217 1.134670 GTGTCTCCGGCAGCTCTATTT 60.135 52.381 0.00 0.00 0.00 1.40
217 218 0.461961 GTGTCTCCGGCAGCTCTATT 59.538 55.000 0.00 0.00 0.00 1.73
218 219 0.684479 TGTGTCTCCGGCAGCTCTAT 60.684 55.000 0.00 0.00 0.00 1.98
219 220 0.684479 ATGTGTCTCCGGCAGCTCTA 60.684 55.000 0.00 0.00 0.00 2.43
220 221 1.954362 GATGTGTCTCCGGCAGCTCT 61.954 60.000 0.00 0.00 0.00 4.09
221 222 1.520342 GATGTGTCTCCGGCAGCTC 60.520 63.158 0.00 0.00 0.00 4.09
222 223 1.548357 AAGATGTGTCTCCGGCAGCT 61.548 55.000 0.00 0.00 32.15 4.24
223 224 1.078848 AAGATGTGTCTCCGGCAGC 60.079 57.895 0.00 0.00 32.15 5.25
224 225 0.247460 TGAAGATGTGTCTCCGGCAG 59.753 55.000 0.00 0.00 32.15 4.85
225 226 0.037326 GTGAAGATGTGTCTCCGGCA 60.037 55.000 0.00 0.00 32.15 5.69
226 227 0.037326 TGTGAAGATGTGTCTCCGGC 60.037 55.000 0.00 0.00 32.15 6.13
227 228 2.274437 CATGTGAAGATGTGTCTCCGG 58.726 52.381 0.00 0.00 32.15 5.14
228 229 2.926200 GACATGTGAAGATGTGTCTCCG 59.074 50.000 1.15 0.00 36.67 4.63
229 230 3.265791 GGACATGTGAAGATGTGTCTCC 58.734 50.000 1.15 0.00 40.50 3.71
230 231 3.930336 TGGACATGTGAAGATGTGTCTC 58.070 45.455 1.15 0.00 40.50 3.36
231 232 4.511527 GATGGACATGTGAAGATGTGTCT 58.488 43.478 1.15 0.00 40.50 3.41
232 233 3.308053 CGATGGACATGTGAAGATGTGTC 59.692 47.826 1.15 0.00 36.67 3.67
233 234 3.264947 CGATGGACATGTGAAGATGTGT 58.735 45.455 1.15 0.00 36.67 3.72
234 235 2.610833 CCGATGGACATGTGAAGATGTG 59.389 50.000 1.15 0.00 36.67 3.21
235 236 2.237143 ACCGATGGACATGTGAAGATGT 59.763 45.455 1.15 0.00 39.34 3.06
236 237 2.610833 CACCGATGGACATGTGAAGATG 59.389 50.000 1.15 0.00 0.00 2.90
237 238 2.501316 TCACCGATGGACATGTGAAGAT 59.499 45.455 1.15 0.00 34.98 2.40
238 239 1.899142 TCACCGATGGACATGTGAAGA 59.101 47.619 1.15 0.00 34.98 2.87
239 240 2.385013 TCACCGATGGACATGTGAAG 57.615 50.000 1.15 0.00 34.98 3.02
240 241 2.235898 TCATCACCGATGGACATGTGAA 59.764 45.455 1.15 0.00 40.74 3.18
241 242 1.830477 TCATCACCGATGGACATGTGA 59.170 47.619 1.15 7.61 40.15 3.58
242 243 2.314323 TCATCACCGATGGACATGTG 57.686 50.000 1.15 0.00 40.15 3.21
243 244 3.897505 TCTATCATCACCGATGGACATGT 59.102 43.478 0.00 0.00 40.15 3.21
244 245 4.492611 CTCTATCATCACCGATGGACATG 58.507 47.826 4.24 0.00 40.15 3.21
245 246 3.513119 CCTCTATCATCACCGATGGACAT 59.487 47.826 4.24 0.00 40.15 3.06
246 247 2.893489 CCTCTATCATCACCGATGGACA 59.107 50.000 4.24 0.00 40.15 4.02
247 248 2.353208 GCCTCTATCATCACCGATGGAC 60.353 54.545 4.24 0.00 40.15 4.02
248 249 1.895798 GCCTCTATCATCACCGATGGA 59.104 52.381 4.24 0.00 40.15 3.41
249 250 1.620323 TGCCTCTATCATCACCGATGG 59.380 52.381 4.24 0.00 40.15 3.51
250 251 3.056322 TGATGCCTCTATCATCACCGATG 60.056 47.826 1.94 0.00 43.63 3.84
251 252 3.168292 TGATGCCTCTATCATCACCGAT 58.832 45.455 1.94 0.00 43.63 4.18
252 253 2.597455 TGATGCCTCTATCATCACCGA 58.403 47.619 1.94 0.00 43.63 4.69
256 257 1.620323 CCGGTGATGCCTCTATCATCA 59.380 52.381 0.00 1.94 45.54 3.07
257 258 1.066573 CCCGGTGATGCCTCTATCATC 60.067 57.143 0.00 0.00 39.13 2.92
258 259 0.979665 CCCGGTGATGCCTCTATCAT 59.020 55.000 0.00 0.00 39.13 2.45
259 260 1.121407 CCCCGGTGATGCCTCTATCA 61.121 60.000 0.00 0.00 34.83 2.15
260 261 1.674057 CCCCGGTGATGCCTCTATC 59.326 63.158 0.00 0.00 34.25 2.08
261 262 2.520536 GCCCCGGTGATGCCTCTAT 61.521 63.158 0.00 0.00 34.25 1.98
262 263 3.161450 GCCCCGGTGATGCCTCTA 61.161 66.667 0.00 0.00 34.25 2.43
276 277 4.176752 CTTGTCTAGCCCCCGCCC 62.177 72.222 0.00 0.00 34.57 6.13
277 278 4.176752 CCTTGTCTAGCCCCCGCC 62.177 72.222 0.00 0.00 34.57 6.13
278 279 3.081409 TCCTTGTCTAGCCCCCGC 61.081 66.667 0.00 0.00 0.00 6.13
279 280 0.976073 TTCTCCTTGTCTAGCCCCCG 60.976 60.000 0.00 0.00 0.00 5.73
280 281 0.542333 GTTCTCCTTGTCTAGCCCCC 59.458 60.000 0.00 0.00 0.00 5.40
281 282 0.542333 GGTTCTCCTTGTCTAGCCCC 59.458 60.000 0.00 0.00 0.00 5.80
282 283 1.574263 AGGTTCTCCTTGTCTAGCCC 58.426 55.000 0.00 0.00 42.12 5.19
293 294 5.372373 CCTGAAGATGGAATAAGGTTCTCC 58.628 45.833 0.00 0.00 0.00 3.71
294 295 5.131142 TCCCTGAAGATGGAATAAGGTTCTC 59.869 44.000 0.00 0.00 0.00 2.87
295 296 5.039645 TCCCTGAAGATGGAATAAGGTTCT 58.960 41.667 0.00 0.00 0.00 3.01
296 297 5.372373 CTCCCTGAAGATGGAATAAGGTTC 58.628 45.833 0.00 0.00 0.00 3.62
297 298 4.385754 GCTCCCTGAAGATGGAATAAGGTT 60.386 45.833 0.00 0.00 0.00 3.50
298 299 3.137360 GCTCCCTGAAGATGGAATAAGGT 59.863 47.826 0.00 0.00 0.00 3.50
299 300 3.497584 GGCTCCCTGAAGATGGAATAAGG 60.498 52.174 0.00 0.00 0.00 2.69
300 301 3.749226 GGCTCCCTGAAGATGGAATAAG 58.251 50.000 0.00 0.00 0.00 1.73
301 302 2.104792 CGGCTCCCTGAAGATGGAATAA 59.895 50.000 0.00 0.00 0.00 1.40
302 303 1.694150 CGGCTCCCTGAAGATGGAATA 59.306 52.381 0.00 0.00 0.00 1.75
303 304 0.471617 CGGCTCCCTGAAGATGGAAT 59.528 55.000 0.00 0.00 0.00 3.01
304 305 1.907739 CGGCTCCCTGAAGATGGAA 59.092 57.895 0.00 0.00 0.00 3.53
305 306 2.735772 GCGGCTCCCTGAAGATGGA 61.736 63.158 0.00 0.00 0.00 3.41
306 307 2.203126 GCGGCTCCCTGAAGATGG 60.203 66.667 0.00 0.00 0.00 3.51
307 308 2.203126 GGCGGCTCCCTGAAGATG 60.203 66.667 0.00 0.00 0.00 2.90
308 309 3.854669 CGGCGGCTCCCTGAAGAT 61.855 66.667 7.61 0.00 0.00 2.40
327 328 2.947890 GCTCATGTAGGCGCGATGC 61.948 63.158 12.10 0.63 45.38 3.91
328 329 1.153597 TTGCTCATGTAGGCGCGATG 61.154 55.000 12.10 3.94 0.00 3.84
329 330 0.877649 CTTGCTCATGTAGGCGCGAT 60.878 55.000 12.10 0.00 0.00 4.58
330 331 1.519234 CTTGCTCATGTAGGCGCGA 60.519 57.895 12.10 0.00 0.00 5.87
331 332 1.519234 TCTTGCTCATGTAGGCGCG 60.519 57.895 0.00 0.00 0.00 6.86
332 333 0.740868 TGTCTTGCTCATGTAGGCGC 60.741 55.000 0.00 0.00 0.00 6.53
333 334 1.002366 GTGTCTTGCTCATGTAGGCG 58.998 55.000 0.00 0.00 0.00 5.52
334 335 2.099141 TGTGTCTTGCTCATGTAGGC 57.901 50.000 0.00 0.00 0.00 3.93
335 336 4.940046 AGATTTGTGTCTTGCTCATGTAGG 59.060 41.667 0.00 0.00 0.00 3.18
336 337 6.492007 AAGATTTGTGTCTTGCTCATGTAG 57.508 37.500 0.00 0.00 37.08 2.74
337 338 7.443879 TGTTAAGATTTGTGTCTTGCTCATGTA 59.556 33.333 0.00 0.00 38.79 2.29
338 339 6.262944 TGTTAAGATTTGTGTCTTGCTCATGT 59.737 34.615 0.00 0.00 38.79 3.21
339 340 6.671190 TGTTAAGATTTGTGTCTTGCTCATG 58.329 36.000 0.00 0.00 38.79 3.07
340 341 6.882610 TGTTAAGATTTGTGTCTTGCTCAT 57.117 33.333 0.00 0.00 38.79 2.90
341 342 6.882610 ATGTTAAGATTTGTGTCTTGCTCA 57.117 33.333 0.00 0.00 38.79 4.26
342 343 8.507249 AGTTATGTTAAGATTTGTGTCTTGCTC 58.493 33.333 0.00 0.00 38.79 4.26
343 344 8.396272 AGTTATGTTAAGATTTGTGTCTTGCT 57.604 30.769 0.00 0.00 38.79 3.91
344 345 8.289618 TGAGTTATGTTAAGATTTGTGTCTTGC 58.710 33.333 0.00 0.00 38.79 4.01
366 367 9.366216 GGTTTGTTTTTAGATGTTTCTTTGAGT 57.634 29.630 0.00 0.00 33.17 3.41
367 368 8.817100 GGGTTTGTTTTTAGATGTTTCTTTGAG 58.183 33.333 0.00 0.00 33.17 3.02
368 369 8.536175 AGGGTTTGTTTTTAGATGTTTCTTTGA 58.464 29.630 0.00 0.00 33.17 2.69
369 370 8.716646 AGGGTTTGTTTTTAGATGTTTCTTTG 57.283 30.769 0.00 0.00 33.17 2.77
370 371 9.733556 AAAGGGTTTGTTTTTAGATGTTTCTTT 57.266 25.926 0.00 0.00 33.17 2.52
371 372 9.378551 GAAAGGGTTTGTTTTTAGATGTTTCTT 57.621 29.630 0.00 0.00 33.17 2.52
372 373 8.536175 TGAAAGGGTTTGTTTTTAGATGTTTCT 58.464 29.630 0.00 0.00 35.90 2.52
373 374 8.600625 GTGAAAGGGTTTGTTTTTAGATGTTTC 58.399 33.333 0.00 0.00 0.00 2.78
374 375 8.318412 AGTGAAAGGGTTTGTTTTTAGATGTTT 58.682 29.630 0.00 0.00 0.00 2.83
375 376 7.763985 CAGTGAAAGGGTTTGTTTTTAGATGTT 59.236 33.333 0.00 0.00 0.00 2.71
376 377 7.264947 CAGTGAAAGGGTTTGTTTTTAGATGT 58.735 34.615 0.00 0.00 0.00 3.06
377 378 6.701400 CCAGTGAAAGGGTTTGTTTTTAGATG 59.299 38.462 0.00 0.00 0.00 2.90
378 379 6.685368 GCCAGTGAAAGGGTTTGTTTTTAGAT 60.685 38.462 0.00 0.00 0.00 1.98
379 380 5.394773 GCCAGTGAAAGGGTTTGTTTTTAGA 60.395 40.000 0.00 0.00 0.00 2.10
380 381 4.808895 GCCAGTGAAAGGGTTTGTTTTTAG 59.191 41.667 0.00 0.00 0.00 1.85
381 382 4.223032 TGCCAGTGAAAGGGTTTGTTTTTA 59.777 37.500 0.00 0.00 0.00 1.52
382 383 3.008485 TGCCAGTGAAAGGGTTTGTTTTT 59.992 39.130 0.00 0.00 0.00 1.94
383 384 2.569404 TGCCAGTGAAAGGGTTTGTTTT 59.431 40.909 0.00 0.00 0.00 2.43
384 385 2.183679 TGCCAGTGAAAGGGTTTGTTT 58.816 42.857 0.00 0.00 0.00 2.83
385 386 1.859302 TGCCAGTGAAAGGGTTTGTT 58.141 45.000 0.00 0.00 0.00 2.83
386 387 1.859302 TTGCCAGTGAAAGGGTTTGT 58.141 45.000 0.00 0.00 0.00 2.83
387 388 2.977772 TTTGCCAGTGAAAGGGTTTG 57.022 45.000 0.00 0.00 0.00 2.93
388 389 3.872696 CTTTTTGCCAGTGAAAGGGTTT 58.127 40.909 0.00 0.00 0.00 3.27
389 390 2.419990 GCTTTTTGCCAGTGAAAGGGTT 60.420 45.455 0.00 0.00 35.15 4.11
390 391 1.138859 GCTTTTTGCCAGTGAAAGGGT 59.861 47.619 0.00 0.00 35.15 4.34
391 392 1.869774 GCTTTTTGCCAGTGAAAGGG 58.130 50.000 0.00 0.00 35.15 3.95
402 403 1.215382 GTGGATCCCGGCTTTTTGC 59.785 57.895 9.90 0.00 41.94 3.68
403 404 0.897863 TGGTGGATCCCGGCTTTTTG 60.898 55.000 9.90 0.00 34.77 2.44
404 405 0.041090 ATGGTGGATCCCGGCTTTTT 59.959 50.000 9.90 0.00 34.77 1.94
405 406 0.684153 CATGGTGGATCCCGGCTTTT 60.684 55.000 9.90 0.00 34.77 2.27
406 407 1.076777 CATGGTGGATCCCGGCTTT 60.077 57.895 9.90 0.00 34.77 3.51
407 408 2.270874 GACATGGTGGATCCCGGCTT 62.271 60.000 9.90 0.00 34.77 4.35
408 409 2.692368 ACATGGTGGATCCCGGCT 60.692 61.111 9.90 0.00 34.77 5.52
409 410 2.203209 GACATGGTGGATCCCGGC 60.203 66.667 9.90 0.00 34.77 6.13
410 411 1.447643 GAGACATGGTGGATCCCGG 59.552 63.158 9.90 0.00 34.77 5.73
411 412 1.337384 TGGAGACATGGTGGATCCCG 61.337 60.000 9.90 0.00 33.40 5.14
412 413 2.620234 TGGAGACATGGTGGATCCC 58.380 57.895 9.90 0.00 33.40 3.85
434 435 1.627297 GGACTCTGGTGGCCTTAGGG 61.627 65.000 3.32 1.62 0.00 3.53
435 436 1.908483 GGACTCTGGTGGCCTTAGG 59.092 63.158 3.32 0.00 0.00 2.69
436 437 0.970937 TCGGACTCTGGTGGCCTTAG 60.971 60.000 3.32 0.00 0.00 2.18
437 438 0.543410 TTCGGACTCTGGTGGCCTTA 60.543 55.000 3.32 0.00 0.00 2.69
438 439 1.831652 CTTCGGACTCTGGTGGCCTT 61.832 60.000 3.32 0.00 0.00 4.35
439 440 2.203788 TTCGGACTCTGGTGGCCT 60.204 61.111 3.32 0.00 0.00 5.19
440 441 2.266055 CTTCGGACTCTGGTGGCC 59.734 66.667 0.00 0.00 0.00 5.36
441 442 1.079750 GTCTTCGGACTCTGGTGGC 60.080 63.158 0.00 0.00 41.44 5.01
442 443 1.213013 CGTCTTCGGACTCTGGTGG 59.787 63.158 0.00 0.00 42.42 4.61
443 444 0.169230 CTCGTCTTCGGACTCTGGTG 59.831 60.000 0.00 0.00 42.42 4.17
444 445 0.961358 CCTCGTCTTCGGACTCTGGT 60.961 60.000 0.00 0.00 42.42 4.00
445 446 1.803943 CCTCGTCTTCGGACTCTGG 59.196 63.158 0.00 0.00 42.42 3.86
446 447 1.137825 GCCTCGTCTTCGGACTCTG 59.862 63.158 0.00 0.00 42.42 3.35
447 448 2.400158 CGCCTCGTCTTCGGACTCT 61.400 63.158 0.00 0.00 42.42 3.24
448 449 2.100603 CGCCTCGTCTTCGGACTC 59.899 66.667 0.00 0.00 42.42 3.36
449 450 3.441290 CCGCCTCGTCTTCGGACT 61.441 66.667 0.00 0.00 45.53 3.85
450 451 3.437795 TCCGCCTCGTCTTCGGAC 61.438 66.667 0.00 0.00 46.12 4.79
452 453 4.493747 GGTCCGCCTCGTCTTCGG 62.494 72.222 0.00 0.00 44.16 4.30
453 454 3.685214 CTGGTCCGCCTCGTCTTCG 62.685 68.421 0.00 0.00 38.55 3.79
454 455 2.182030 CTGGTCCGCCTCGTCTTC 59.818 66.667 0.00 0.00 35.27 2.87
455 456 4.070552 GCTGGTCCGCCTCGTCTT 62.071 66.667 0.00 0.00 35.27 3.01
480 481 3.248446 TTCCTTTGCCTCCCGTCGG 62.248 63.158 3.60 3.60 0.00 4.79
481 482 1.741770 CTTCCTTTGCCTCCCGTCG 60.742 63.158 0.00 0.00 0.00 5.12
482 483 0.673956 GACTTCCTTTGCCTCCCGTC 60.674 60.000 0.00 0.00 0.00 4.79
483 484 1.128188 AGACTTCCTTTGCCTCCCGT 61.128 55.000 0.00 0.00 0.00 5.28
484 485 0.902531 TAGACTTCCTTTGCCTCCCG 59.097 55.000 0.00 0.00 0.00 5.14
485 486 3.653835 ATTAGACTTCCTTTGCCTCCC 57.346 47.619 0.00 0.00 0.00 4.30
486 487 5.984695 AAAATTAGACTTCCTTTGCCTCC 57.015 39.130 0.00 0.00 0.00 4.30
507 508 2.510613 CAACCGCTTCCTCCCTAAAAA 58.489 47.619 0.00 0.00 0.00 1.94
508 509 1.884928 GCAACCGCTTCCTCCCTAAAA 60.885 52.381 0.00 0.00 34.30 1.52
509 510 0.322187 GCAACCGCTTCCTCCCTAAA 60.322 55.000 0.00 0.00 34.30 1.85
510 511 1.298667 GCAACCGCTTCCTCCCTAA 59.701 57.895 0.00 0.00 34.30 2.69
511 512 2.987125 GCAACCGCTTCCTCCCTA 59.013 61.111 0.00 0.00 34.30 3.53
512 513 4.394712 CGCAACCGCTTCCTCCCT 62.395 66.667 0.00 0.00 35.30 4.20
513 514 2.588856 ATACGCAACCGCTTCCTCCC 62.589 60.000 0.00 0.00 38.22 4.30
514 515 0.743345 AATACGCAACCGCTTCCTCC 60.743 55.000 0.00 0.00 38.22 4.30
515 516 0.373716 CAATACGCAACCGCTTCCTC 59.626 55.000 0.00 0.00 38.22 3.71
516 517 1.024579 CCAATACGCAACCGCTTCCT 61.025 55.000 0.00 0.00 38.22 3.36
517 518 1.022451 TCCAATACGCAACCGCTTCC 61.022 55.000 0.00 0.00 38.22 3.46
518 519 1.014352 ATCCAATACGCAACCGCTTC 58.986 50.000 0.00 0.00 38.22 3.86
519 520 1.459450 AATCCAATACGCAACCGCTT 58.541 45.000 0.00 0.00 38.22 4.68
520 521 1.459450 AAATCCAATACGCAACCGCT 58.541 45.000 0.00 0.00 38.22 5.52
521 522 2.182014 GAAAATCCAATACGCAACCGC 58.818 47.619 0.00 0.00 38.22 5.68
522 523 3.479505 TGAAAATCCAATACGCAACCG 57.520 42.857 0.00 0.00 41.14 4.44
523 524 9.691362 ATTATTATGAAAATCCAATACGCAACC 57.309 29.630 0.00 0.00 0.00 3.77
545 546 9.193133 CGTGTGCTAGCAAAGTATAGTTATTAT 57.807 33.333 21.29 0.00 0.00 1.28
546 547 8.192774 ACGTGTGCTAGCAAAGTATAGTTATTA 58.807 33.333 21.29 0.00 0.00 0.98
567 568 4.695217 ATTTTTATCAATCCGCACGTGT 57.305 36.364 18.38 0.00 0.00 4.49
568 569 5.168856 CGTTATTTTTATCAATCCGCACGTG 59.831 40.000 12.28 12.28 0.00 4.49
569 570 5.063691 TCGTTATTTTTATCAATCCGCACGT 59.936 36.000 0.00 0.00 0.00 4.49
570 571 5.494618 TCGTTATTTTTATCAATCCGCACG 58.505 37.500 0.00 0.00 0.00 5.34
571 572 7.728580 TTTCGTTATTTTTATCAATCCGCAC 57.271 32.000 0.00 0.00 0.00 5.34
572 573 7.808381 TGTTTTCGTTATTTTTATCAATCCGCA 59.192 29.630 0.00 0.00 0.00 5.69
573 574 8.164058 TGTTTTCGTTATTTTTATCAATCCGC 57.836 30.769 0.00 0.00 0.00 5.54
602 603 6.980051 ACAATAAGGAGGTTCGTATTTGAC 57.020 37.500 0.00 0.00 0.00 3.18
604 605 7.141100 ACAACAATAAGGAGGTTCGTATTTG 57.859 36.000 0.00 0.00 0.00 2.32
608 609 5.047164 TGCTACAACAATAAGGAGGTTCGTA 60.047 40.000 0.00 0.00 0.00 3.43
609 610 4.251268 GCTACAACAATAAGGAGGTTCGT 58.749 43.478 0.00 0.00 0.00 3.85
610 611 4.250464 TGCTACAACAATAAGGAGGTTCG 58.750 43.478 0.00 0.00 0.00 3.95
613 614 5.193679 GGATTGCTACAACAATAAGGAGGT 58.806 41.667 0.00 0.00 40.31 3.85
618 619 4.704540 TGTGGGGATTGCTACAACAATAAG 59.295 41.667 0.00 0.00 40.31 1.73
619 620 4.461081 GTGTGGGGATTGCTACAACAATAA 59.539 41.667 0.00 0.00 40.31 1.40
620 621 4.013728 GTGTGGGGATTGCTACAACAATA 58.986 43.478 0.00 0.00 40.31 1.90
632 633 2.266070 CACGCAATGTGTGGGGATT 58.734 52.632 18.32 0.00 44.36 3.01
644 645 3.980646 ACAGTAGCAATTTTCACGCAA 57.019 38.095 0.00 0.00 0.00 4.85
646 647 2.405025 GCAACAGTAGCAATTTTCACGC 59.595 45.455 0.00 0.00 0.00 5.34
689 691 8.097038 ACTGATATGCAGAGTGAAAGTCTTTTA 58.903 33.333 0.00 0.00 46.68 1.52
691 693 6.471146 ACTGATATGCAGAGTGAAAGTCTTT 58.529 36.000 0.00 0.00 46.68 2.52
692 694 6.047511 ACTGATATGCAGAGTGAAAGTCTT 57.952 37.500 0.00 0.00 46.68 3.01
735 745 8.533569 AAAAATCTCCAGGTCAGAAAAAGTTA 57.466 30.769 0.00 0.00 0.00 2.24
736 746 7.423844 AAAAATCTCCAGGTCAGAAAAAGTT 57.576 32.000 0.00 0.00 0.00 2.66
783 793 9.807649 GGCTGAATAATTATCTCACAACAAAAT 57.192 29.630 0.00 0.00 0.00 1.82
784 794 8.801299 TGGCTGAATAATTATCTCACAACAAAA 58.199 29.630 0.00 0.00 0.00 2.44
788 798 7.989826 ACTTGGCTGAATAATTATCTCACAAC 58.010 34.615 0.00 0.00 0.00 3.32
789 799 8.579850 AACTTGGCTGAATAATTATCTCACAA 57.420 30.769 0.00 6.15 0.00 3.33
798 808 8.010105 TGGGGATAATAACTTGGCTGAATAATT 58.990 33.333 0.00 0.00 0.00 1.40
800 810 6.775629 GTGGGGATAATAACTTGGCTGAATAA 59.224 38.462 0.00 0.00 0.00 1.40
801 811 6.126332 TGTGGGGATAATAACTTGGCTGAATA 60.126 38.462 0.00 0.00 0.00 1.75
802 812 5.140454 GTGGGGATAATAACTTGGCTGAAT 58.860 41.667 0.00 0.00 0.00 2.57
803 813 4.017958 TGTGGGGATAATAACTTGGCTGAA 60.018 41.667 0.00 0.00 0.00 3.02
804 814 3.525609 TGTGGGGATAATAACTTGGCTGA 59.474 43.478 0.00 0.00 0.00 4.26
805 815 3.632145 GTGTGGGGATAATAACTTGGCTG 59.368 47.826 0.00 0.00 0.00 4.85
807 817 3.626930 TGTGTGGGGATAATAACTTGGC 58.373 45.455 0.00 0.00 0.00 4.52
808 818 6.039717 CAGAATGTGTGGGGATAATAACTTGG 59.960 42.308 0.00 0.00 0.00 3.61
809 819 6.039717 CCAGAATGTGTGGGGATAATAACTTG 59.960 42.308 0.00 0.00 0.00 3.16
810 820 6.129179 CCAGAATGTGTGGGGATAATAACTT 58.871 40.000 0.00 0.00 0.00 2.66
811 821 5.193728 ACCAGAATGTGTGGGGATAATAACT 59.806 40.000 0.00 0.00 39.65 2.24
812 822 5.299279 CACCAGAATGTGTGGGGATAATAAC 59.701 44.000 0.00 0.00 41.54 1.89
813 823 5.445069 CACCAGAATGTGTGGGGATAATAA 58.555 41.667 0.00 0.00 41.54 1.40
814 824 4.141274 CCACCAGAATGTGTGGGGATAATA 60.141 45.833 0.00 0.00 46.80 0.98
815 825 3.373001 CCACCAGAATGTGTGGGGATAAT 60.373 47.826 0.00 0.00 46.80 1.28
816 826 2.025416 CCACCAGAATGTGTGGGGATAA 60.025 50.000 0.00 0.00 46.80 1.75
817 827 1.563879 CCACCAGAATGTGTGGGGATA 59.436 52.381 0.00 0.00 46.80 2.59
818 828 0.332632 CCACCAGAATGTGTGGGGAT 59.667 55.000 0.00 0.00 46.80 3.85
819 829 1.767036 CCACCAGAATGTGTGGGGA 59.233 57.895 0.00 0.00 46.80 4.81
820 830 4.421365 CCACCAGAATGTGTGGGG 57.579 61.111 0.70 0.00 46.80 4.96
823 833 1.172180 AACGGCCACCAGAATGTGTG 61.172 55.000 2.24 0.00 37.14 3.82
824 834 1.150536 AACGGCCACCAGAATGTGT 59.849 52.632 2.24 0.00 34.35 3.72
825 835 1.580942 CAACGGCCACCAGAATGTG 59.419 57.895 2.24 0.00 35.98 3.21
826 836 1.603455 CCAACGGCCACCAGAATGT 60.603 57.895 2.24 0.00 0.00 2.71
827 837 0.680921 ATCCAACGGCCACCAGAATG 60.681 55.000 2.24 0.00 0.00 2.67
828 838 0.680921 CATCCAACGGCCACCAGAAT 60.681 55.000 2.24 0.00 0.00 2.40
851 861 2.425143 TCCAATCTCTGCCATCCAAC 57.575 50.000 0.00 0.00 0.00 3.77
863 873 8.928448 TGAGCTACTAAAGTAATCATCCAATCT 58.072 33.333 0.00 0.00 0.00 2.40
880 890 2.231478 GTGTGACTTGGCTGAGCTACTA 59.769 50.000 3.72 0.00 0.00 1.82
884 894 1.072159 GGTGTGACTTGGCTGAGCT 59.928 57.895 3.72 0.00 0.00 4.09
895 905 2.762887 TCCTCTGATCTGATGGTGTGAC 59.237 50.000 2.43 0.00 0.00 3.67
905 939 1.065401 GCGTGAGTCTCCTCTGATCTG 59.935 57.143 0.00 0.00 38.61 2.90
906 940 1.388547 GCGTGAGTCTCCTCTGATCT 58.611 55.000 0.00 0.00 38.61 2.75
907 941 0.383949 GGCGTGAGTCTCCTCTGATC 59.616 60.000 0.00 0.00 38.61 2.92
992 1045 4.899239 GGAGGAGCATGACGCCGG 62.899 72.222 0.00 0.00 44.30 6.13
996 1049 1.739049 GAGGAGGAGGAGCATGACG 59.261 63.158 0.00 0.00 0.00 4.35
997 1050 1.743321 CGGAGGAGGAGGAGCATGAC 61.743 65.000 0.00 0.00 0.00 3.06
998 1051 1.456518 CGGAGGAGGAGGAGCATGA 60.457 63.158 0.00 0.00 0.00 3.07
1024 1077 1.432807 GGAGAGGAGATGGGAGAGGAT 59.567 57.143 0.00 0.00 0.00 3.24
1536 1596 1.920835 GGGCTTGACACCCCTCTCT 60.921 63.158 3.55 0.00 42.01 3.10
1544 1604 1.336240 GCTTGACATTGGGCTTGACAC 60.336 52.381 0.00 0.00 0.00 3.67
1818 1881 3.637273 ACCGGAGCCTTGGACACC 61.637 66.667 9.46 0.00 0.00 4.16
1976 2039 7.826260 TTTTCCTTGAGAAATTTCACAACAC 57.174 32.000 22.19 7.45 43.93 3.32
2063 2126 3.065371 GTGAGGGCATATGAACTTTTCCG 59.935 47.826 6.97 0.00 0.00 4.30
2267 2337 3.063997 CAGAGCGGATAACCAACATCAAC 59.936 47.826 0.00 0.00 35.59 3.18
2351 2426 7.498443 ACGGAGGGAGTAAATGATAACTTTAG 58.502 38.462 0.00 0.00 0.00 1.85
2438 2513 3.641906 ACTACTTCCTCCGTCCCATAATG 59.358 47.826 0.00 0.00 0.00 1.90
2507 2582 3.313526 CCAAGTGTTAGATAGCATGGCAC 59.686 47.826 0.00 0.00 0.00 5.01
2864 2943 3.963129 AGAAAATTGGTGGGCGATAAGA 58.037 40.909 0.00 0.00 0.00 2.10
2876 2955 6.660949 CCCTCCAGGCTATAATAGAAAATTGG 59.339 42.308 0.00 0.00 0.00 3.16
2899 2978 2.830370 CAGGATTTCAGCGGGCCC 60.830 66.667 13.57 13.57 0.00 5.80
2992 3103 1.604278 GACAACCAACTCTTGTCAGGC 59.396 52.381 6.44 0.00 44.69 4.85
3006 3118 1.679032 GCCATACCAGACCTGACAACC 60.679 57.143 0.00 0.00 0.00 3.77
3010 3122 0.905357 ACAGCCATACCAGACCTGAC 59.095 55.000 0.00 0.00 0.00 3.51
3013 3125 1.961180 GCGACAGCCATACCAGACCT 61.961 60.000 0.00 0.00 37.42 3.85
3017 3129 1.779025 GCATGCGACAGCCATACCAG 61.779 60.000 0.00 0.00 44.33 4.00
3025 3137 1.709147 CCAACCTAGCATGCGACAGC 61.709 60.000 13.01 0.00 45.41 4.40
3033 3145 2.814805 AGCAATGACCAACCTAGCAT 57.185 45.000 0.00 0.00 0.00 3.79
3040 3152 5.412594 TCATCAAGTCTTAGCAATGACCAAC 59.587 40.000 0.00 0.00 34.02 3.77
3042 3154 5.164620 TCATCAAGTCTTAGCAATGACCA 57.835 39.130 0.00 0.00 34.02 4.02
3046 3158 5.814764 AGCTTCATCAAGTCTTAGCAATG 57.185 39.130 6.98 0.37 31.45 2.82
3055 3167 5.967088 TCCAGTTACTAGCTTCATCAAGTC 58.033 41.667 0.00 0.00 31.45 3.01
3072 3184 8.446714 AGATATGAATACTCATGGATCCAGTT 57.553 34.615 21.33 0.35 42.48 3.16
3073 3185 7.125507 GGAGATATGAATACTCATGGATCCAGT 59.874 40.741 21.33 14.97 42.48 4.00
3074 3186 7.125356 TGGAGATATGAATACTCATGGATCCAG 59.875 40.741 21.33 12.25 42.48 3.86
3076 3188 7.429374 TGGAGATATGAATACTCATGGATCC 57.571 40.000 4.20 4.20 42.48 3.36
3116 3228 5.586643 GGGTCCAGAATTGACATTAAGAGAC 59.413 44.000 0.00 0.00 34.36 3.36
3122 3234 5.779241 AAGAGGGTCCAGAATTGACATTA 57.221 39.130 0.00 0.00 34.36 1.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.