Multiple sequence alignment - TraesCS6B01G020600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G020600 chr6B 100.000 3059 0 0 1 3059 12644906 12647964 0.000000e+00 5650.0
1 TraesCS6B01G020600 chr6B 86.639 1437 173 12 633 2063 12655269 12656692 0.000000e+00 1572.0
2 TraesCS6B01G020600 chr6B 95.714 630 19 3 5 634 106245628 106246249 0.000000e+00 1007.0
3 TraesCS6B01G020600 chr6D 88.499 1426 154 6 633 2054 7087680 7089099 0.000000e+00 1716.0
4 TraesCS6B01G020600 chr6D 88.983 708 70 7 2342 3042 360417510 360418216 0.000000e+00 869.0
5 TraesCS6B01G020600 chr6D 88.418 708 74 7 2342 3042 360364997 360365703 0.000000e+00 846.0
6 TraesCS6B01G020600 chr6D 88.068 704 70 8 2344 3042 360410583 360411277 0.000000e+00 822.0
7 TraesCS6B01G020600 chr6A 86.125 1427 160 16 634 2054 6717404 6718798 0.000000e+00 1504.0
8 TraesCS6B01G020600 chr4B 95.261 633 24 1 4 636 148223032 148222406 0.000000e+00 998.0
9 TraesCS6B01G020600 chr4B 94.770 631 27 1 4 634 148229912 148229288 0.000000e+00 977.0
10 TraesCS6B01G020600 chr3B 94.629 633 26 8 4 636 257135199 257134575 0.000000e+00 974.0
11 TraesCS6B01G020600 chr3B 94.612 631 27 7 4 634 257142032 257141409 0.000000e+00 970.0
12 TraesCS6B01G020600 chr2B 94.479 634 29 1 1 634 632003623 632004250 0.000000e+00 972.0
13 TraesCS6B01G020600 chr2B 94.479 634 27 3 1 634 627938369 627938994 0.000000e+00 970.0
14 TraesCS6B01G020600 chr2B 75.843 919 206 11 928 1835 166464222 166465135 1.290000e-123 453.0
15 TraesCS6B01G020600 chr2B 83.796 216 30 5 2123 2337 260650434 260650223 1.860000e-47 200.0
16 TraesCS6B01G020600 chr7B 94.612 631 27 7 4 634 321455717 321455094 0.000000e+00 970.0
17 TraesCS6B01G020600 chr7B 87.101 721 88 4 2342 3059 40865906 40865188 0.000000e+00 811.0
18 TraesCS6B01G020600 chr7B 76.996 1052 224 16 804 1843 637363752 637364797 1.220000e-163 586.0
19 TraesCS6B01G020600 chr7B 79.015 467 81 16 2567 3022 558903822 558903362 1.380000e-78 303.0
20 TraesCS6B01G020600 chr5B 94.603 630 28 1 4 633 475175353 475174730 0.000000e+00 970.0
21 TraesCS6B01G020600 chr2A 87.042 710 82 10 2342 3042 459494715 459494007 0.000000e+00 793.0
22 TraesCS6B01G020600 chr2A 85.573 707 82 13 2342 3042 459404673 459403981 0.000000e+00 723.0
23 TraesCS6B01G020600 chr2A 75.529 425 88 15 2600 3016 400758196 400757780 8.650000e-46 195.0
24 TraesCS6B01G020600 chr2A 91.057 123 9 2 2123 2245 257878370 257878250 6.790000e-37 165.0
25 TraesCS6B01G020600 chr2A 81.159 138 20 6 2119 2254 75929057 75928924 4.170000e-19 106.0
26 TraesCS6B01G020600 chr1B 85.675 719 77 11 2344 3059 5200331 5199636 0.000000e+00 734.0
27 TraesCS6B01G020600 chr7D 76.239 1069 239 12 807 1866 575596130 575597192 1.240000e-153 553.0
28 TraesCS6B01G020600 chr7A 76.027 1047 236 12 807 1843 665974424 665975465 2.090000e-146 529.0
29 TraesCS6B01G020600 chr3D 82.110 436 72 6 2583 3016 239653866 239653435 4.820000e-98 368.0
30 TraesCS6B01G020600 chr3A 86.349 315 41 2 2663 2976 340353996 340353683 2.920000e-90 342.0
31 TraesCS6B01G020600 chr2D 83.333 210 30 5 2120 2328 207245448 207245653 4.030000e-44 189.0
32 TraesCS6B01G020600 chr5A 80.263 76 12 3 2186 2261 635890946 635890874 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G020600 chr6B 12644906 12647964 3058 False 5650 5650 100.000 1 3059 1 chr6B.!!$F1 3058
1 TraesCS6B01G020600 chr6B 12655269 12656692 1423 False 1572 1572 86.639 633 2063 1 chr6B.!!$F2 1430
2 TraesCS6B01G020600 chr6B 106245628 106246249 621 False 1007 1007 95.714 5 634 1 chr6B.!!$F3 629
3 TraesCS6B01G020600 chr6D 7087680 7089099 1419 False 1716 1716 88.499 633 2054 1 chr6D.!!$F1 1421
4 TraesCS6B01G020600 chr6D 360417510 360418216 706 False 869 869 88.983 2342 3042 1 chr6D.!!$F4 700
5 TraesCS6B01G020600 chr6D 360364997 360365703 706 False 846 846 88.418 2342 3042 1 chr6D.!!$F2 700
6 TraesCS6B01G020600 chr6D 360410583 360411277 694 False 822 822 88.068 2344 3042 1 chr6D.!!$F3 698
7 TraesCS6B01G020600 chr6A 6717404 6718798 1394 False 1504 1504 86.125 634 2054 1 chr6A.!!$F1 1420
8 TraesCS6B01G020600 chr4B 148222406 148223032 626 True 998 998 95.261 4 636 1 chr4B.!!$R1 632
9 TraesCS6B01G020600 chr4B 148229288 148229912 624 True 977 977 94.770 4 634 1 chr4B.!!$R2 630
10 TraesCS6B01G020600 chr3B 257134575 257135199 624 True 974 974 94.629 4 636 1 chr3B.!!$R1 632
11 TraesCS6B01G020600 chr3B 257141409 257142032 623 True 970 970 94.612 4 634 1 chr3B.!!$R2 630
12 TraesCS6B01G020600 chr2B 632003623 632004250 627 False 972 972 94.479 1 634 1 chr2B.!!$F3 633
13 TraesCS6B01G020600 chr2B 627938369 627938994 625 False 970 970 94.479 1 634 1 chr2B.!!$F2 633
14 TraesCS6B01G020600 chr2B 166464222 166465135 913 False 453 453 75.843 928 1835 1 chr2B.!!$F1 907
15 TraesCS6B01G020600 chr7B 321455094 321455717 623 True 970 970 94.612 4 634 1 chr7B.!!$R2 630
16 TraesCS6B01G020600 chr7B 40865188 40865906 718 True 811 811 87.101 2342 3059 1 chr7B.!!$R1 717
17 TraesCS6B01G020600 chr7B 637363752 637364797 1045 False 586 586 76.996 804 1843 1 chr7B.!!$F1 1039
18 TraesCS6B01G020600 chr5B 475174730 475175353 623 True 970 970 94.603 4 633 1 chr5B.!!$R1 629
19 TraesCS6B01G020600 chr2A 459494007 459494715 708 True 793 793 87.042 2342 3042 1 chr2A.!!$R5 700
20 TraesCS6B01G020600 chr2A 459403981 459404673 692 True 723 723 85.573 2342 3042 1 chr2A.!!$R4 700
21 TraesCS6B01G020600 chr1B 5199636 5200331 695 True 734 734 85.675 2344 3059 1 chr1B.!!$R1 715
22 TraesCS6B01G020600 chr7D 575596130 575597192 1062 False 553 553 76.239 807 1866 1 chr7D.!!$F1 1059
23 TraesCS6B01G020600 chr7A 665974424 665975465 1041 False 529 529 76.027 807 1843 1 chr7A.!!$F1 1036

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
549 552 1.065199 TCTACGAGGGTACGTGGACAT 60.065 52.381 0.0 0.0 45.53 3.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2145 2156 0.030369 ACGTGTTCGACTCAGACACC 59.97 55.0 10.81 0.0 40.62 4.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
63 64 1.725182 TCCCTCTCCTTCCTTCTCCTT 59.275 52.381 0.00 0.00 0.00 3.36
64 65 2.115427 CCCTCTCCTTCCTTCTCCTTC 58.885 57.143 0.00 0.00 0.00 3.46
65 66 2.292851 CCCTCTCCTTCCTTCTCCTTCT 60.293 54.545 0.00 0.00 0.00 2.85
66 67 3.031013 CCTCTCCTTCCTTCTCCTTCTC 58.969 54.545 0.00 0.00 0.00 2.87
67 68 3.031013 CTCTCCTTCCTTCTCCTTCTCC 58.969 54.545 0.00 0.00 0.00 3.71
68 69 2.657459 TCTCCTTCCTTCTCCTTCTCCT 59.343 50.000 0.00 0.00 0.00 3.69
510 513 4.171005 CGACTATATCAACCGTGTTGTGT 58.829 43.478 13.95 8.64 0.00 3.72
520 523 3.211045 ACCGTGTTGTGTTAATGCTTCT 58.789 40.909 0.00 0.00 0.00 2.85
522 525 3.003275 CCGTGTTGTGTTAATGCTTCTGT 59.997 43.478 0.00 0.00 0.00 3.41
525 528 5.052436 CGTGTTGTGTTAATGCTTCTGTTTG 60.052 40.000 0.00 0.00 0.00 2.93
549 552 1.065199 TCTACGAGGGTACGTGGACAT 60.065 52.381 0.00 0.00 45.53 3.06
637 640 1.972795 ACTACGTTCCCCAACAGCTAA 59.027 47.619 0.00 0.00 32.14 3.09
645 648 3.554934 TCCCCAACAGCTAATATTGCAG 58.445 45.455 0.00 0.03 0.00 4.41
655 658 3.378112 GCTAATATTGCAGCAAGTGTCCA 59.622 43.478 14.47 0.00 37.73 4.02
699 702 7.320499 GTACAACAATGCAATGTACTTCAAC 57.680 36.000 8.06 0.00 43.71 3.18
707 710 8.602328 CAATGCAATGTACTTCAACAAAAAGAA 58.398 29.630 0.00 0.00 32.02 2.52
749 752 9.385902 GTGAATTTTGTATATCCATCACATTCG 57.614 33.333 0.00 0.00 36.75 3.34
751 754 7.750229 ATTTTGTATATCCATCACATTCGCT 57.250 32.000 0.00 0.00 0.00 4.93
753 756 4.568956 TGTATATCCATCACATTCGCTGG 58.431 43.478 0.00 0.00 0.00 4.85
792 795 4.060038 TGCAATACACTAGCTAAGAGGC 57.940 45.455 0.00 0.00 0.00 4.70
793 796 3.053455 GCAATACACTAGCTAAGAGGCG 58.947 50.000 0.00 0.00 37.29 5.52
797 800 6.270815 CAATACACTAGCTAAGAGGCGTTTA 58.729 40.000 0.00 0.00 37.29 2.01
825 828 6.959639 TTTTCAGGTATTATCATTGGGCTC 57.040 37.500 0.00 0.00 0.00 4.70
856 859 2.811410 TCGGGGTTCTACTTCTTAGCA 58.189 47.619 0.00 0.00 0.00 3.49
864 867 5.337652 GGTTCTACTTCTTAGCATGAGTGGT 60.338 44.000 0.00 0.00 39.78 4.16
874 877 6.939730 TCTTAGCATGAGTGGTGTTTTCATTA 59.060 34.615 0.00 0.00 37.28 1.90
882 885 6.429692 TGAGTGGTGTTTTCATTATACACAGG 59.570 38.462 0.00 0.00 42.96 4.00
903 906 4.706962 AGGTGGAAAAGATACATCCAAAGC 59.293 41.667 0.00 0.00 44.41 3.51
936 939 7.973944 CGGAGGAAATATTTTAGGAAAAACCAG 59.026 37.037 1.43 0.00 42.04 4.00
1000 1006 5.009010 GCAAGTCAAAAGACAAGGATCTCAA 59.991 40.000 0.00 0.00 0.00 3.02
1004 1010 5.012239 TCAAAAGACAAGGATCTCAATGGG 58.988 41.667 0.00 0.00 0.00 4.00
1053 1059 2.997303 CCATCAAACACGTATCGTTGGA 59.003 45.455 0.00 0.00 38.32 3.53
1055 1061 3.095102 TCAAACACGTATCGTTGGACA 57.905 42.857 0.00 0.00 38.32 4.02
1194 1200 4.026744 TCCTCTCTCAGATAAACCACAGG 58.973 47.826 0.00 0.00 0.00 4.00
1227 1233 4.070716 AGCTCTTTGGATGTTGTCTTGAG 58.929 43.478 0.00 0.00 0.00 3.02
1300 1306 6.925610 TTGGTATTCTTCATTCTGATTCCG 57.074 37.500 0.00 0.00 0.00 4.30
1301 1307 5.989477 TGGTATTCTTCATTCTGATTCCGT 58.011 37.500 0.00 0.00 0.00 4.69
1322 1331 4.092968 CGTCACTAGTTGTTTATCTTGGGC 59.907 45.833 0.00 0.00 0.00 5.36
1348 1357 1.610522 GCATAAGGATTGCTGCGGAAT 59.389 47.619 0.00 0.00 37.14 3.01
1350 1359 2.708216 TAAGGATTGCTGCGGAATCA 57.292 45.000 18.66 0.00 32.34 2.57
1494 1503 7.043059 GCTTCGAGATTAGTTTCTATTGACCAG 60.043 40.741 0.00 0.00 0.00 4.00
1509 1518 3.649073 TGACCAGACTCACATTGTAACG 58.351 45.455 0.00 0.00 0.00 3.18
1521 1530 5.410132 TCACATTGTAACGAATGTACAAGGG 59.590 40.000 0.00 5.87 43.29 3.95
1566 1575 7.030165 CAGAGTATTACTACACTGGACACTTG 58.970 42.308 9.04 0.00 40.69 3.16
1674 1685 6.034256 CAGGCTCGAAGCAAAATTTATCAAAG 59.966 38.462 8.71 0.00 44.75 2.77
1675 1686 5.220284 GGCTCGAAGCAAAATTTATCAAAGC 60.220 40.000 8.71 1.28 44.75 3.51
1688 1699 8.831715 AATTTATCAAAGCATTTTCTTTCGGT 57.168 26.923 0.00 0.00 35.03 4.69
1703 1714 3.595709 TTCGGTGTTAAAAGCAAGACG 57.404 42.857 0.00 0.00 0.00 4.18
1724 1735 6.321690 AGACGGATTACAGAAATAGTAGCTGT 59.678 38.462 0.00 0.00 44.38 4.40
1847 1858 1.034292 GTGGAGATGGCTTTGAGGGC 61.034 60.000 0.00 0.00 0.00 5.19
1849 1860 0.033699 GGAGATGGCTTTGAGGGCTT 60.034 55.000 0.00 0.00 0.00 4.35
1871 1882 7.219917 GGCTTTGCAAACAAAAAGGTTAAAATC 59.780 33.333 8.05 0.00 44.90 2.17
1872 1883 7.219917 GCTTTGCAAACAAAAAGGTTAAAATCC 59.780 33.333 8.05 0.00 44.90 3.01
1874 1885 9.449719 TTTGCAAACAAAAAGGTTAAAATCCTA 57.550 25.926 8.05 0.00 42.73 2.94
1912 1923 8.534496 CAATAAATGGAAAAGAGAAGGAACCAT 58.466 33.333 0.00 0.00 38.12 3.55
1914 1925 7.379059 AAATGGAAAAGAGAAGGAACCATTT 57.621 32.000 0.00 0.00 45.50 2.32
1919 1930 7.782644 TGGAAAAGAGAAGGAACCATTTCTAAA 59.217 33.333 0.00 0.00 33.97 1.85
1924 1935 7.470192 AGAGAAGGAACCATTTCTAAATCCAA 58.530 34.615 0.00 0.00 33.97 3.53
1929 1940 6.782494 AGGAACCATTTCTAAATCCAACAAGT 59.218 34.615 0.00 0.00 31.71 3.16
1932 1943 6.981722 ACCATTTCTAAATCCAACAAGTGAC 58.018 36.000 0.00 0.00 0.00 3.67
1935 1946 8.090214 CCATTTCTAAATCCAACAAGTGACAAT 58.910 33.333 0.00 0.00 0.00 2.71
1942 1953 4.009675 TCCAACAAGTGACAATGATAGCC 58.990 43.478 0.00 0.00 0.00 3.93
1947 1958 3.550437 AGTGACAATGATAGCCCTGAC 57.450 47.619 0.00 0.00 0.00 3.51
1948 1959 2.840038 AGTGACAATGATAGCCCTGACA 59.160 45.455 0.00 0.00 0.00 3.58
1951 1962 3.209410 GACAATGATAGCCCTGACAAGG 58.791 50.000 0.00 0.00 44.06 3.61
1960 1971 1.174712 CCCTGACAAGGTGGTTGCTG 61.175 60.000 0.00 0.00 42.74 4.41
1967 1978 1.068055 CAAGGTGGTTGCTGCTGATTC 60.068 52.381 0.00 0.00 0.00 2.52
1968 1979 0.610232 AGGTGGTTGCTGCTGATTCC 60.610 55.000 0.00 0.00 0.00 3.01
1969 1980 0.895100 GGTGGTTGCTGCTGATTCCA 60.895 55.000 0.00 0.00 0.00 3.53
1976 1987 1.654954 GCTGCTGATTCCAGTGCCAG 61.655 60.000 0.00 0.00 42.35 4.85
1985 1996 2.113860 TCCAGTGCCAGTGCTAATTC 57.886 50.000 0.00 0.00 38.71 2.17
2001 2012 8.049117 AGTGCTAATTCTCCATCTGAAAACATA 58.951 33.333 0.00 0.00 0.00 2.29
2010 2021 7.012894 TCTCCATCTGAAAACATAAAAACGTGT 59.987 33.333 0.00 0.00 0.00 4.49
2030 2041 5.445142 CGTGTTATAGCTTTGAGCAAGAGTG 60.445 44.000 0.00 0.00 45.56 3.51
2049 2060 5.070847 AGAGTGCATGTCATATGATGGTGTA 59.929 40.000 9.02 5.32 0.00 2.90
2067 2078 5.515797 GTGTATCACACTAGATGTAGGCA 57.484 43.478 0.00 0.00 45.27 4.75
2068 2079 6.090483 GTGTATCACACTAGATGTAGGCAT 57.910 41.667 0.00 0.00 45.27 4.40
2069 2080 6.153067 GTGTATCACACTAGATGTAGGCATC 58.847 44.000 0.00 0.00 46.14 3.91
2070 2081 6.239036 GTGTATCACACTAGATGTAGGCATCA 60.239 42.308 9.80 0.00 46.98 3.07
2071 2082 7.998719 GTGTATCACACTAGATGTAGGCATCAG 60.999 44.444 9.80 7.56 46.98 2.90
2081 2092 5.876651 ATGTAGGCATCAGTCATGTTAGA 57.123 39.130 0.00 0.00 34.56 2.10
2082 2093 5.675684 TGTAGGCATCAGTCATGTTAGAA 57.324 39.130 0.00 0.00 34.56 2.10
2083 2094 6.239217 TGTAGGCATCAGTCATGTTAGAAT 57.761 37.500 0.00 0.00 34.56 2.40
2084 2095 6.653020 TGTAGGCATCAGTCATGTTAGAATT 58.347 36.000 0.00 0.00 34.56 2.17
2085 2096 6.539826 TGTAGGCATCAGTCATGTTAGAATTG 59.460 38.462 0.00 0.00 34.56 2.32
2086 2097 5.503927 AGGCATCAGTCATGTTAGAATTGT 58.496 37.500 0.00 0.00 34.56 2.71
2087 2098 5.356190 AGGCATCAGTCATGTTAGAATTGTG 59.644 40.000 0.00 0.00 34.56 3.33
2088 2099 5.124457 GGCATCAGTCATGTTAGAATTGTGT 59.876 40.000 0.00 0.00 34.56 3.72
2089 2100 6.253746 GCATCAGTCATGTTAGAATTGTGTC 58.746 40.000 0.00 0.00 34.56 3.67
2090 2101 6.472680 CATCAGTCATGTTAGAATTGTGTCG 58.527 40.000 0.00 0.00 0.00 4.35
2091 2102 5.778862 TCAGTCATGTTAGAATTGTGTCGA 58.221 37.500 0.00 0.00 0.00 4.20
2092 2103 6.220201 TCAGTCATGTTAGAATTGTGTCGAA 58.780 36.000 0.00 0.00 0.00 3.71
2093 2104 6.873605 TCAGTCATGTTAGAATTGTGTCGAAT 59.126 34.615 0.00 0.00 0.00 3.34
2094 2105 8.032451 TCAGTCATGTTAGAATTGTGTCGAATA 58.968 33.333 0.00 0.00 0.00 1.75
2095 2106 8.110612 CAGTCATGTTAGAATTGTGTCGAATAC 58.889 37.037 0.00 0.00 0.00 1.89
2096 2107 7.009265 AGTCATGTTAGAATTGTGTCGAATACG 59.991 37.037 0.00 0.00 41.26 3.06
2097 2108 6.809689 TCATGTTAGAATTGTGTCGAATACGT 59.190 34.615 0.00 0.00 40.69 3.57
2098 2109 6.384178 TGTTAGAATTGTGTCGAATACGTG 57.616 37.500 0.00 0.00 40.69 4.49
2099 2110 5.921976 TGTTAGAATTGTGTCGAATACGTGT 59.078 36.000 0.00 0.00 40.69 4.49
2100 2111 4.903638 AGAATTGTGTCGAATACGTGTG 57.096 40.909 0.00 0.00 40.69 3.82
2101 2112 4.304110 AGAATTGTGTCGAATACGTGTGT 58.696 39.130 0.00 0.00 40.69 3.72
2102 2113 5.463286 AGAATTGTGTCGAATACGTGTGTA 58.537 37.500 0.00 0.00 40.69 2.90
2103 2114 5.344128 AGAATTGTGTCGAATACGTGTGTAC 59.656 40.000 0.00 0.00 40.69 2.90
2104 2115 3.622627 TGTGTCGAATACGTGTGTACA 57.377 42.857 0.00 0.00 40.69 2.90
2105 2116 3.557508 TGTGTCGAATACGTGTGTACAG 58.442 45.455 0.00 0.00 40.69 2.74
2106 2117 3.250521 TGTGTCGAATACGTGTGTACAGA 59.749 43.478 0.00 0.00 40.69 3.41
2107 2118 3.844657 GTGTCGAATACGTGTGTACAGAG 59.155 47.826 0.00 0.00 40.69 3.35
2108 2119 3.499537 TGTCGAATACGTGTGTACAGAGT 59.500 43.478 0.00 0.00 40.69 3.24
2109 2120 4.023792 TGTCGAATACGTGTGTACAGAGTT 60.024 41.667 0.00 0.00 40.69 3.01
2110 2121 4.913924 GTCGAATACGTGTGTACAGAGTTT 59.086 41.667 0.00 0.00 40.69 2.66
2111 2122 5.400485 GTCGAATACGTGTGTACAGAGTTTT 59.600 40.000 0.00 0.00 40.69 2.43
2112 2123 6.578545 GTCGAATACGTGTGTACAGAGTTTTA 59.421 38.462 0.00 0.00 40.69 1.52
2113 2124 7.113404 GTCGAATACGTGTGTACAGAGTTTTAA 59.887 37.037 0.00 0.00 40.69 1.52
2114 2125 7.809331 TCGAATACGTGTGTACAGAGTTTTAAT 59.191 33.333 0.00 0.00 40.69 1.40
2115 2126 9.064804 CGAATACGTGTGTACAGAGTTTTAATA 57.935 33.333 0.00 0.00 32.26 0.98
2117 2128 9.918630 AATACGTGTGTACAGAGTTTTAATACT 57.081 29.630 0.00 0.00 32.26 2.12
2120 2131 9.918630 ACGTGTGTACAGAGTTTTAATACTATT 57.081 29.630 0.00 0.00 0.00 1.73
2141 2152 8.598041 ACTATTGGACTTATAATTAGCAGAGGG 58.402 37.037 1.56 0.00 0.00 4.30
2142 2153 6.824958 TTGGACTTATAATTAGCAGAGGGT 57.175 37.500 1.56 0.00 0.00 4.34
2143 2154 6.824958 TGGACTTATAATTAGCAGAGGGTT 57.175 37.500 1.56 0.00 0.00 4.11
2144 2155 7.924358 TGGACTTATAATTAGCAGAGGGTTA 57.076 36.000 1.56 0.00 0.00 2.85
2145 2156 7.963532 TGGACTTATAATTAGCAGAGGGTTAG 58.036 38.462 1.56 0.00 0.00 2.34
2146 2157 7.016268 TGGACTTATAATTAGCAGAGGGTTAGG 59.984 40.741 1.56 0.00 0.00 2.69
2147 2158 7.016366 GGACTTATAATTAGCAGAGGGTTAGGT 59.984 40.741 1.56 0.00 0.00 3.08
2148 2159 7.736893 ACTTATAATTAGCAGAGGGTTAGGTG 58.263 38.462 1.56 0.00 0.00 4.00
2149 2160 7.347485 ACTTATAATTAGCAGAGGGTTAGGTGT 59.653 37.037 1.56 0.00 0.00 4.16
2150 2161 4.489306 AATTAGCAGAGGGTTAGGTGTC 57.511 45.455 0.00 0.00 0.00 3.67
2151 2162 2.921834 TAGCAGAGGGTTAGGTGTCT 57.078 50.000 0.00 0.00 0.00 3.41
2152 2163 1.270907 AGCAGAGGGTTAGGTGTCTG 58.729 55.000 0.00 0.00 39.60 3.51
2153 2164 1.203187 AGCAGAGGGTTAGGTGTCTGA 60.203 52.381 2.40 0.00 39.04 3.27
2154 2165 1.205893 GCAGAGGGTTAGGTGTCTGAG 59.794 57.143 2.40 0.00 39.04 3.35
2155 2166 2.530701 CAGAGGGTTAGGTGTCTGAGT 58.469 52.381 0.00 0.00 39.04 3.41
2156 2167 2.494073 CAGAGGGTTAGGTGTCTGAGTC 59.506 54.545 0.00 0.00 39.04 3.36
2157 2168 1.473278 GAGGGTTAGGTGTCTGAGTCG 59.527 57.143 0.00 0.00 0.00 4.18
2158 2169 1.075050 AGGGTTAGGTGTCTGAGTCGA 59.925 52.381 0.00 0.00 0.00 4.20
2159 2170 1.891150 GGGTTAGGTGTCTGAGTCGAA 59.109 52.381 0.00 0.00 0.00 3.71
2160 2171 2.352519 GGGTTAGGTGTCTGAGTCGAAC 60.353 54.545 0.00 0.00 0.00 3.95
2161 2172 2.295349 GGTTAGGTGTCTGAGTCGAACA 59.705 50.000 0.00 0.00 0.00 3.18
2162 2173 3.306818 GTTAGGTGTCTGAGTCGAACAC 58.693 50.000 15.83 15.83 0.00 3.32
2163 2174 0.311165 AGGTGTCTGAGTCGAACACG 59.689 55.000 16.96 0.00 32.62 4.49
2164 2175 0.030369 GGTGTCTGAGTCGAACACGT 59.970 55.000 16.96 0.00 32.62 4.49
2165 2176 1.121240 GTGTCTGAGTCGAACACGTG 58.879 55.000 15.48 15.48 0.00 4.49
2166 2177 0.736636 TGTCTGAGTCGAACACGTGT 59.263 50.000 17.22 17.22 0.00 4.49
2167 2178 1.941975 TGTCTGAGTCGAACACGTGTA 59.058 47.619 23.69 3.00 0.00 2.90
2168 2179 2.355444 TGTCTGAGTCGAACACGTGTAA 59.645 45.455 23.69 7.98 0.00 2.41
2169 2180 2.718027 GTCTGAGTCGAACACGTGTAAC 59.282 50.000 23.69 19.38 0.00 2.50
2170 2181 2.049228 CTGAGTCGAACACGTGTAACC 58.951 52.381 23.69 13.10 0.00 2.85
2171 2182 1.269206 TGAGTCGAACACGTGTAACCC 60.269 52.381 23.69 11.96 0.00 4.11
2172 2183 0.746063 AGTCGAACACGTGTAACCCA 59.254 50.000 23.69 1.43 0.00 4.51
2173 2184 1.134226 GTCGAACACGTGTAACCCAG 58.866 55.000 23.69 9.80 0.00 4.45
2174 2185 0.032403 TCGAACACGTGTAACCCAGG 59.968 55.000 23.69 6.41 35.07 4.45
2175 2186 1.562575 CGAACACGTGTAACCCAGGC 61.563 60.000 23.69 3.47 32.08 4.85
2176 2187 1.228033 AACACGTGTAACCCAGGCC 60.228 57.895 23.69 0.00 32.08 5.19
2177 2188 1.702022 AACACGTGTAACCCAGGCCT 61.702 55.000 23.69 0.00 32.08 5.19
2178 2189 0.832983 ACACGTGTAACCCAGGCCTA 60.833 55.000 21.98 0.00 32.08 3.93
2179 2190 0.322322 CACGTGTAACCCAGGCCTAA 59.678 55.000 3.98 0.00 32.08 2.69
2180 2191 1.065709 CACGTGTAACCCAGGCCTAAT 60.066 52.381 3.98 0.00 32.08 1.73
2181 2192 2.168936 CACGTGTAACCCAGGCCTAATA 59.831 50.000 3.98 0.00 32.08 0.98
2182 2193 3.043418 ACGTGTAACCCAGGCCTAATAT 58.957 45.455 3.98 0.00 32.08 1.28
2183 2194 4.039488 CACGTGTAACCCAGGCCTAATATA 59.961 45.833 3.98 0.00 32.08 0.86
2184 2195 4.842380 ACGTGTAACCCAGGCCTAATATAT 59.158 41.667 3.98 0.00 32.08 0.86
2185 2196 6.018469 ACGTGTAACCCAGGCCTAATATATA 58.982 40.000 3.98 0.00 32.08 0.86
2186 2197 6.497954 ACGTGTAACCCAGGCCTAATATATAA 59.502 38.462 3.98 0.00 32.08 0.98
2187 2198 7.016465 ACGTGTAACCCAGGCCTAATATATAAA 59.984 37.037 3.98 0.00 32.08 1.40
2188 2199 7.548075 CGTGTAACCCAGGCCTAATATATAAAG 59.452 40.741 3.98 0.00 0.00 1.85
2189 2200 7.827729 GTGTAACCCAGGCCTAATATATAAAGG 59.172 40.741 3.98 0.00 0.00 3.11
2199 2210 6.129179 CCTAATATATAAAGGCACCATGGGG 58.871 44.000 18.09 14.63 41.29 4.96
2212 2223 3.593442 CCATGGGGTAGCCAAAATAGA 57.407 47.619 14.06 0.00 0.00 1.98
2213 2224 3.222603 CCATGGGGTAGCCAAAATAGAC 58.777 50.000 14.06 0.00 0.00 2.59
2214 2225 3.117512 CCATGGGGTAGCCAAAATAGACT 60.118 47.826 14.06 0.00 0.00 3.24
2215 2226 4.104102 CCATGGGGTAGCCAAAATAGACTA 59.896 45.833 14.06 0.00 0.00 2.59
2216 2227 5.308825 CATGGGGTAGCCAAAATAGACTAG 58.691 45.833 14.06 0.00 0.00 2.57
2217 2228 4.627015 TGGGGTAGCCAAAATAGACTAGA 58.373 43.478 14.06 0.00 0.00 2.43
2218 2229 4.654262 TGGGGTAGCCAAAATAGACTAGAG 59.346 45.833 14.06 0.00 0.00 2.43
2219 2230 4.900054 GGGGTAGCCAAAATAGACTAGAGA 59.100 45.833 14.06 0.00 0.00 3.10
2220 2231 5.365895 GGGGTAGCCAAAATAGACTAGAGAA 59.634 44.000 14.06 0.00 0.00 2.87
2221 2232 6.126854 GGGGTAGCCAAAATAGACTAGAGAAA 60.127 42.308 14.06 0.00 0.00 2.52
2222 2233 7.336396 GGGTAGCCAAAATAGACTAGAGAAAA 58.664 38.462 5.96 0.00 0.00 2.29
2223 2234 7.496263 GGGTAGCCAAAATAGACTAGAGAAAAG 59.504 40.741 5.96 0.00 0.00 2.27
2224 2235 6.993786 AGCCAAAATAGACTAGAGAAAAGC 57.006 37.500 0.00 0.00 0.00 3.51
2225 2236 6.716284 AGCCAAAATAGACTAGAGAAAAGCT 58.284 36.000 0.00 0.00 0.00 3.74
2226 2237 6.597280 AGCCAAAATAGACTAGAGAAAAGCTG 59.403 38.462 0.00 0.00 0.00 4.24
2227 2238 6.183360 GCCAAAATAGACTAGAGAAAAGCTGG 60.183 42.308 0.00 0.00 0.00 4.85
2228 2239 6.881602 CCAAAATAGACTAGAGAAAAGCTGGT 59.118 38.462 0.00 0.00 0.00 4.00
2229 2240 8.041323 CCAAAATAGACTAGAGAAAAGCTGGTA 58.959 37.037 0.00 0.00 0.00 3.25
2230 2241 9.092876 CAAAATAGACTAGAGAAAAGCTGGTAG 57.907 37.037 0.00 0.00 0.00 3.18
2231 2242 6.969993 ATAGACTAGAGAAAAGCTGGTAGG 57.030 41.667 0.00 0.00 0.00 3.18
2232 2243 3.449377 AGACTAGAGAAAAGCTGGTAGGC 59.551 47.826 0.00 0.00 0.00 3.93
2233 2244 3.445987 ACTAGAGAAAAGCTGGTAGGCT 58.554 45.455 0.00 0.00 45.30 4.58
2234 2245 4.611367 ACTAGAGAAAAGCTGGTAGGCTA 58.389 43.478 0.00 0.00 42.24 3.93
2235 2246 4.647399 ACTAGAGAAAAGCTGGTAGGCTAG 59.353 45.833 0.00 0.00 42.24 3.42
2236 2247 3.714144 AGAGAAAAGCTGGTAGGCTAGA 58.286 45.455 0.00 0.00 42.24 2.43
2237 2248 3.449377 AGAGAAAAGCTGGTAGGCTAGAC 59.551 47.826 0.00 0.00 42.24 2.59
2238 2249 3.173965 AGAAAAGCTGGTAGGCTAGACA 58.826 45.455 0.00 0.00 42.24 3.41
2239 2250 3.777522 AGAAAAGCTGGTAGGCTAGACAT 59.222 43.478 0.00 0.00 42.24 3.06
2240 2251 3.550437 AAAGCTGGTAGGCTAGACATG 57.450 47.619 0.00 0.00 42.24 3.21
2241 2252 2.461300 AGCTGGTAGGCTAGACATGA 57.539 50.000 0.00 0.00 41.16 3.07
2242 2253 2.315176 AGCTGGTAGGCTAGACATGAG 58.685 52.381 0.00 0.00 41.16 2.90
2243 2254 2.091610 AGCTGGTAGGCTAGACATGAGA 60.092 50.000 0.00 0.00 41.16 3.27
2244 2255 2.896685 GCTGGTAGGCTAGACATGAGAT 59.103 50.000 0.00 0.00 0.00 2.75
2245 2256 3.056891 GCTGGTAGGCTAGACATGAGATC 60.057 52.174 0.00 0.00 0.00 2.75
2246 2257 4.148079 CTGGTAGGCTAGACATGAGATCA 58.852 47.826 0.00 0.00 0.00 2.92
2247 2258 3.891977 TGGTAGGCTAGACATGAGATCAC 59.108 47.826 0.00 0.00 0.00 3.06
2248 2259 3.057876 GGTAGGCTAGACATGAGATCACG 60.058 52.174 0.00 0.00 0.00 4.35
2249 2260 2.937519 AGGCTAGACATGAGATCACGA 58.062 47.619 0.00 0.00 0.00 4.35
2250 2261 2.884012 AGGCTAGACATGAGATCACGAG 59.116 50.000 0.00 0.00 0.00 4.18
2251 2262 2.881513 GGCTAGACATGAGATCACGAGA 59.118 50.000 0.00 0.00 0.00 4.04
2252 2263 3.058293 GGCTAGACATGAGATCACGAGAG 60.058 52.174 0.00 0.00 0.00 3.20
2253 2264 3.058293 GCTAGACATGAGATCACGAGAGG 60.058 52.174 0.00 0.00 0.00 3.69
2254 2265 2.305928 AGACATGAGATCACGAGAGGG 58.694 52.381 0.00 0.00 0.00 4.30
2261 2272 4.356979 TCACGAGAGGGATGGTCC 57.643 61.111 0.00 0.00 39.71 4.46
2262 2273 1.386550 TCACGAGAGGGATGGTCCA 59.613 57.895 0.00 0.00 39.71 4.02
2263 2274 0.684479 TCACGAGAGGGATGGTCCAG 60.684 60.000 0.00 0.00 39.71 3.86
2264 2275 1.381872 ACGAGAGGGATGGTCCAGG 60.382 63.158 0.00 0.00 38.64 4.45
2265 2276 2.801631 CGAGAGGGATGGTCCAGGC 61.802 68.421 0.00 0.00 38.64 4.85
2266 2277 1.383803 GAGAGGGATGGTCCAGGCT 60.384 63.158 0.00 0.00 38.64 4.58
2267 2278 1.383803 AGAGGGATGGTCCAGGCTC 60.384 63.158 0.00 0.00 38.64 4.70
2268 2279 2.367512 AGGGATGGTCCAGGCTCC 60.368 66.667 0.00 0.00 38.64 4.70
2269 2280 3.866582 GGGATGGTCCAGGCTCCG 61.867 72.222 0.00 0.00 38.64 4.63
2270 2281 3.866582 GGATGGTCCAGGCTCCGG 61.867 72.222 0.00 0.00 36.28 5.14
2271 2282 3.083997 GATGGTCCAGGCTCCGGT 61.084 66.667 0.00 0.00 0.00 5.28
2272 2283 3.391665 GATGGTCCAGGCTCCGGTG 62.392 68.421 0.00 0.00 0.00 4.94
2284 2295 4.864334 CCGGTGGCAGGGCTGATC 62.864 72.222 0.00 0.00 0.00 2.92
2286 2297 4.864334 GGTGGCAGGGCTGATCGG 62.864 72.222 0.00 0.00 0.00 4.18
2287 2298 3.785859 GTGGCAGGGCTGATCGGA 61.786 66.667 5.48 0.00 0.00 4.55
2288 2299 3.785859 TGGCAGGGCTGATCGGAC 61.786 66.667 5.48 0.83 0.00 4.79
2289 2300 4.554036 GGCAGGGCTGATCGGACC 62.554 72.222 19.93 19.93 33.74 4.46
2290 2301 4.899239 GCAGGGCTGATCGGACCG 62.899 72.222 21.26 16.25 39.91 4.79
2291 2302 4.227134 CAGGGCTGATCGGACCGG 62.227 72.222 21.26 17.00 39.91 5.28
2295 2306 4.899239 GCTGATCGGACCGGCCAG 62.899 72.222 23.26 23.26 35.94 4.85
2310 2321 4.087892 CAGGGCAGGGTGGTCGAG 62.088 72.222 0.00 0.00 0.00 4.04
2311 2322 4.316823 AGGGCAGGGTGGTCGAGA 62.317 66.667 0.00 0.00 0.00 4.04
2312 2323 3.083997 GGGCAGGGTGGTCGAGAT 61.084 66.667 0.00 0.00 0.00 2.75
2313 2324 2.670148 GGGCAGGGTGGTCGAGATT 61.670 63.158 0.00 0.00 0.00 2.40
2314 2325 1.299976 GGCAGGGTGGTCGAGATTT 59.700 57.895 0.00 0.00 0.00 2.17
2315 2326 1.026718 GGCAGGGTGGTCGAGATTTG 61.027 60.000 0.00 0.00 0.00 2.32
2316 2327 0.321653 GCAGGGTGGTCGAGATTTGT 60.322 55.000 0.00 0.00 0.00 2.83
2317 2328 1.726853 CAGGGTGGTCGAGATTTGTC 58.273 55.000 0.00 0.00 0.00 3.18
2318 2329 1.276421 CAGGGTGGTCGAGATTTGTCT 59.724 52.381 0.00 0.00 0.00 3.41
2319 2330 1.276421 AGGGTGGTCGAGATTTGTCTG 59.724 52.381 0.00 0.00 0.00 3.51
2320 2331 1.275291 GGGTGGTCGAGATTTGTCTGA 59.725 52.381 0.00 0.00 0.00 3.27
2321 2332 2.093447 GGGTGGTCGAGATTTGTCTGAT 60.093 50.000 0.00 0.00 0.00 2.90
2322 2333 2.932614 GGTGGTCGAGATTTGTCTGATG 59.067 50.000 0.00 0.00 0.00 3.07
2323 2334 2.932614 GTGGTCGAGATTTGTCTGATGG 59.067 50.000 0.00 0.00 0.00 3.51
2324 2335 2.567169 TGGTCGAGATTTGTCTGATGGT 59.433 45.455 0.00 0.00 0.00 3.55
2325 2336 3.190874 GGTCGAGATTTGTCTGATGGTC 58.809 50.000 0.00 0.00 0.00 4.02
2326 2337 3.118956 GGTCGAGATTTGTCTGATGGTCT 60.119 47.826 0.00 0.00 0.00 3.85
2327 2338 4.109050 GTCGAGATTTGTCTGATGGTCTC 58.891 47.826 0.00 0.00 0.00 3.36
2328 2339 3.111838 CGAGATTTGTCTGATGGTCTCG 58.888 50.000 15.11 15.11 45.71 4.04
2329 2340 3.452474 GAGATTTGTCTGATGGTCTCGG 58.548 50.000 0.00 0.00 0.00 4.63
2330 2341 2.834549 AGATTTGTCTGATGGTCTCGGT 59.165 45.455 0.00 0.00 0.00 4.69
2331 2342 2.455674 TTTGTCTGATGGTCTCGGTG 57.544 50.000 0.00 0.00 0.00 4.94
2332 2343 1.338107 TTGTCTGATGGTCTCGGTGT 58.662 50.000 0.00 0.00 0.00 4.16
2333 2344 0.603065 TGTCTGATGGTCTCGGTGTG 59.397 55.000 0.00 0.00 0.00 3.82
2334 2345 0.737715 GTCTGATGGTCTCGGTGTGC 60.738 60.000 0.00 0.00 0.00 4.57
2335 2346 0.900182 TCTGATGGTCTCGGTGTGCT 60.900 55.000 0.00 0.00 0.00 4.40
2336 2347 0.036952 CTGATGGTCTCGGTGTGCTT 60.037 55.000 0.00 0.00 0.00 3.91
2337 2348 0.396435 TGATGGTCTCGGTGTGCTTT 59.604 50.000 0.00 0.00 0.00 3.51
2338 2349 1.079503 GATGGTCTCGGTGTGCTTTC 58.920 55.000 0.00 0.00 0.00 2.62
2339 2350 0.687354 ATGGTCTCGGTGTGCTTTCT 59.313 50.000 0.00 0.00 0.00 2.52
2340 2351 0.033504 TGGTCTCGGTGTGCTTTCTC 59.966 55.000 0.00 0.00 0.00 2.87
2362 2373 1.951602 GTAACACCCTGGTTTTCGCTT 59.048 47.619 0.00 0.00 32.29 4.68
2487 2507 4.227197 TCCTATCCAACCAGAGATTCTCC 58.773 47.826 10.09 0.00 0.00 3.71
2528 2548 4.160626 CCCAAGATATATTCTCCGGACCTC 59.839 50.000 0.00 0.00 31.78 3.85
2548 2568 1.152631 CCACCGAAACCCCACCTTT 60.153 57.895 0.00 0.00 0.00 3.11
2597 2620 2.554370 TCAGTTACAAAGGAACCCCG 57.446 50.000 0.00 0.00 37.58 5.73
2598 2621 1.072648 TCAGTTACAAAGGAACCCCGG 59.927 52.381 0.00 0.00 37.58 5.73
2608 2631 1.663739 GAACCCCGGTTTCCTTTGC 59.336 57.895 0.00 0.00 38.60 3.68
2617 2640 1.683385 GGTTTCCTTTGCTCTGTTGCT 59.317 47.619 0.00 0.00 0.00 3.91
2634 2657 2.472029 TGCTTCCCAAACTTTTCCCAA 58.528 42.857 0.00 0.00 0.00 4.12
2656 2679 9.135189 CCCAATGATCATCCTATCTTTGTAAAA 57.865 33.333 9.06 0.00 38.44 1.52
2659 2682 9.699410 AATGATCATCCTATCTTTGTAAAACCA 57.301 29.630 9.06 0.00 0.00 3.67
2683 2706 5.993441 AGGATATGCAAAAATATTGCCAAGC 59.007 36.000 10.34 1.98 44.32 4.01
2690 2713 5.106237 GCAAAAATATTGCCAAGCCATTTGA 60.106 36.000 10.73 0.00 39.38 2.69
2745 2771 8.650143 TTCTGCCAGTTAAAGGAATTAAATCT 57.350 30.769 0.00 0.00 35.33 2.40
2917 2945 6.584185 TTCTAAAGGAACTACCATTTTGGC 57.416 37.500 0.00 0.00 38.79 4.52
2984 3013 9.699410 TCCATATCTTCACCATTTTTATCAAGT 57.301 29.630 0.00 0.00 0.00 3.16
3016 3045 5.376625 TCCATAGTTCAAAGTTTGAGCACT 58.623 37.500 27.55 24.13 42.51 4.40
3030 3059 4.690184 TGAGCACTACATCAATTTGCAG 57.310 40.909 0.00 0.00 35.57 4.41
3042 3071 4.401022 TCAATTTGCAGATTCTGTCCAGT 58.599 39.130 14.90 0.00 33.43 4.00
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 1.345715 CGGCCCCCTAGTCCAATTCT 61.346 60.000 0.00 0.00 0.00 2.40
32 33 3.569135 AGGAGAGGGAGGAAAAAGAGA 57.431 47.619 0.00 0.00 0.00 3.10
63 64 1.725182 AGGAAGGGAAGGAGAAGGAGA 59.275 52.381 0.00 0.00 0.00 3.71
64 65 2.262266 AGGAAGGGAAGGAGAAGGAG 57.738 55.000 0.00 0.00 0.00 3.69
65 66 2.552367 GAAGGAAGGGAAGGAGAAGGA 58.448 52.381 0.00 0.00 0.00 3.36
66 67 1.562008 GGAAGGAAGGGAAGGAGAAGG 59.438 57.143 0.00 0.00 0.00 3.46
67 68 1.562008 GGGAAGGAAGGGAAGGAGAAG 59.438 57.143 0.00 0.00 0.00 2.85
68 69 1.670059 GGGAAGGAAGGGAAGGAGAA 58.330 55.000 0.00 0.00 0.00 2.87
319 322 4.078516 GTTCTACCGGCGCAGGGT 62.079 66.667 30.14 26.49 41.62 4.34
494 497 4.757657 AGCATTAACACAACACGGTTGATA 59.242 37.500 19.38 9.31 0.00 2.15
510 513 3.146066 AGACCGCAAACAGAAGCATTAA 58.854 40.909 0.00 0.00 0.00 1.40
520 523 1.290955 CCCTCGTAGACCGCAAACA 59.709 57.895 0.00 0.00 36.19 2.83
522 525 0.527565 GTACCCTCGTAGACCGCAAA 59.472 55.000 0.00 0.00 36.19 3.68
525 528 2.109126 ACGTACCCTCGTAGACCGC 61.109 63.158 0.00 0.00 42.35 5.68
549 552 1.169577 GCAACGAGAGAGGAGAGTGA 58.830 55.000 0.00 0.00 0.00 3.41
637 640 3.354948 TCTGGACACTTGCTGCAATAT 57.645 42.857 16.38 4.45 0.00 1.28
675 678 6.915300 TGTTGAAGTACATTGCATTGTTGTAC 59.085 34.615 18.52 17.06 43.77 2.90
727 730 7.308770 CCAGCGAATGTGATGGATATACAAAAT 60.309 37.037 0.00 0.00 34.60 1.82
735 738 4.631131 CTTACCAGCGAATGTGATGGATA 58.369 43.478 8.58 0.00 36.62 2.59
825 828 0.391263 GAACCCCGAAGCCACTACTG 60.391 60.000 0.00 0.00 0.00 2.74
856 859 7.121168 CCTGTGTATAATGAAAACACCACTCAT 59.879 37.037 2.69 0.00 42.22 2.90
864 867 7.825331 TTTCCACCTGTGTATAATGAAAACA 57.175 32.000 0.00 0.00 0.00 2.83
874 877 6.069673 TGGATGTATCTTTTCCACCTGTGTAT 60.070 38.462 0.00 0.00 34.65 2.29
882 885 4.462483 TGGCTTTGGATGTATCTTTTCCAC 59.538 41.667 0.00 0.00 39.21 4.02
903 906 7.277396 TCCTAAAATATTTCCTCCGTAACTGG 58.723 38.462 0.10 0.00 0.00 4.00
936 939 8.966069 ATATAAGCTGTTCTAAAAGAAGACCC 57.034 34.615 0.00 0.00 34.42 4.46
1000 1006 1.062581 TGCCTTCTCTAGCTCTCCCAT 60.063 52.381 0.00 0.00 0.00 4.00
1004 1010 3.601443 TTGTTGCCTTCTCTAGCTCTC 57.399 47.619 0.00 0.00 0.00 3.20
1053 1059 3.731728 ATGCCGTGCCCTCCATGT 61.732 61.111 0.00 0.00 0.00 3.21
1055 1061 4.511246 CCATGCCGTGCCCTCCAT 62.511 66.667 0.00 0.00 0.00 3.41
1134 1140 4.984295 TGAATTGGTTGATCTCACCTTGA 58.016 39.130 13.83 3.50 0.00 3.02
1194 1200 5.122396 ACATCCAAAGAGCTTTACGATGTTC 59.878 40.000 20.76 0.00 42.61 3.18
1300 1306 5.122396 CAGCCCAAGATAAACAACTAGTGAC 59.878 44.000 0.00 0.00 0.00 3.67
1301 1307 5.012664 TCAGCCCAAGATAAACAACTAGTGA 59.987 40.000 0.00 0.00 0.00 3.41
1322 1331 2.033049 GCAGCAATCCTTATGCAGTCAG 59.967 50.000 0.00 0.00 46.22 3.51
1365 1374 2.611473 CGAAGCTGCGGAATGGAGATAT 60.611 50.000 6.07 0.00 38.54 1.63
1494 1503 6.699895 TGTACATTCGTTACAATGTGAGTC 57.300 37.500 17.10 9.46 44.92 3.36
1509 1518 2.486592 CCCAAACGTCCCTTGTACATTC 59.513 50.000 0.00 0.00 0.00 2.67
1521 1530 1.406477 GGATCCAGGTACCCAAACGTC 60.406 57.143 8.74 0.00 0.00 4.34
1563 1572 8.315391 TGTAGACATCACTTTTCTCATTCAAG 57.685 34.615 0.00 0.00 0.00 3.02
1566 1575 6.593382 AGCTGTAGACATCACTTTTCTCATTC 59.407 38.462 0.00 0.00 0.00 2.67
1674 1685 5.233263 TGCTTTTAACACCGAAAGAAAATGC 59.767 36.000 0.00 0.00 35.41 3.56
1675 1686 6.820470 TGCTTTTAACACCGAAAGAAAATG 57.180 33.333 0.00 0.00 35.41 2.32
1688 1699 5.992829 TCTGTAATCCGTCTTGCTTTTAACA 59.007 36.000 0.00 0.00 0.00 2.41
1703 1714 6.817184 TGGACAGCTACTATTTCTGTAATCC 58.183 40.000 0.00 0.00 40.74 3.01
1724 1735 3.569701 GGTTGCTTCATCAAGAACTTGGA 59.430 43.478 13.46 2.82 40.78 3.53
1847 1858 8.458052 AGGATTTTAACCTTTTTGTTTGCAAAG 58.542 29.630 13.26 1.16 44.32 2.77
1849 1860 7.929941 AGGATTTTAACCTTTTTGTTTGCAA 57.070 28.000 0.00 0.00 33.55 4.08
1885 1896 7.728083 TGGTTCCTTCTCTTTTCCATTTATTGA 59.272 33.333 0.00 0.00 0.00 2.57
1889 1900 8.491045 AAATGGTTCCTTCTCTTTTCCATTTA 57.509 30.769 14.76 0.00 45.83 1.40
1890 1901 7.379059 AAATGGTTCCTTCTCTTTTCCATTT 57.621 32.000 11.76 11.76 44.18 2.32
1897 1908 7.950124 TGGATTTAGAAATGGTTCCTTCTCTTT 59.050 33.333 0.00 0.00 33.89 2.52
1912 1923 8.231692 TCATTGTCACTTGTTGGATTTAGAAA 57.768 30.769 0.00 0.00 0.00 2.52
1914 1925 9.166173 CTATCATTGTCACTTGTTGGATTTAGA 57.834 33.333 0.00 0.00 0.00 2.10
1919 1930 4.641989 GGCTATCATTGTCACTTGTTGGAT 59.358 41.667 0.00 0.00 0.00 3.41
1924 1935 3.264193 TCAGGGCTATCATTGTCACTTGT 59.736 43.478 0.00 0.00 0.00 3.16
1929 1940 3.370846 CCTTGTCAGGGCTATCATTGTCA 60.371 47.826 0.00 0.00 36.36 3.58
1932 1943 2.947652 CACCTTGTCAGGGCTATCATTG 59.052 50.000 0.00 0.00 46.01 2.82
1935 1946 0.911769 CCACCTTGTCAGGGCTATCA 59.088 55.000 0.00 0.00 46.01 2.15
1947 1958 0.963962 AATCAGCAGCAACCACCTTG 59.036 50.000 0.00 0.00 0.00 3.61
1948 1959 1.251251 GAATCAGCAGCAACCACCTT 58.749 50.000 0.00 0.00 0.00 3.50
1951 1962 0.524862 CTGGAATCAGCAGCAACCAC 59.475 55.000 0.00 0.00 33.86 4.16
1960 1971 1.930908 GCACTGGCACTGGAATCAGC 61.931 60.000 0.00 0.00 44.59 4.26
1967 1978 2.012673 GAGAATTAGCACTGGCACTGG 58.987 52.381 0.00 0.00 44.61 4.00
1968 1979 2.012673 GGAGAATTAGCACTGGCACTG 58.987 52.381 0.00 0.00 44.61 3.66
1969 1980 1.630369 TGGAGAATTAGCACTGGCACT 59.370 47.619 0.00 0.00 44.61 4.40
1976 1987 6.500684 TGTTTTCAGATGGAGAATTAGCAC 57.499 37.500 0.00 0.00 0.00 4.40
1985 1996 7.138736 ACACGTTTTTATGTTTTCAGATGGAG 58.861 34.615 0.00 0.00 0.00 3.86
2001 2012 6.067263 TGCTCAAAGCTATAACACGTTTTT 57.933 33.333 0.00 0.00 42.97 1.94
2005 2016 4.566004 TCTTGCTCAAAGCTATAACACGT 58.434 39.130 0.11 0.00 42.97 4.49
2030 2041 5.702209 TGTGATACACCATCATATGACATGC 59.298 40.000 7.78 0.00 45.37 4.06
2063 2074 5.356190 CACAATTCTAACATGACTGATGCCT 59.644 40.000 0.00 0.00 35.15 4.75
2064 2075 5.124457 ACACAATTCTAACATGACTGATGCC 59.876 40.000 0.00 0.00 35.15 4.40
2065 2076 6.187125 ACACAATTCTAACATGACTGATGC 57.813 37.500 0.00 0.00 35.15 3.91
2066 2077 6.311200 TCGACACAATTCTAACATGACTGATG 59.689 38.462 0.00 0.00 38.15 3.07
2067 2078 6.398095 TCGACACAATTCTAACATGACTGAT 58.602 36.000 0.00 0.00 0.00 2.90
2068 2079 5.778862 TCGACACAATTCTAACATGACTGA 58.221 37.500 0.00 0.00 0.00 3.41
2069 2080 6.466308 TTCGACACAATTCTAACATGACTG 57.534 37.500 0.00 0.00 0.00 3.51
2070 2081 7.009265 CGTATTCGACACAATTCTAACATGACT 59.991 37.037 0.00 0.00 39.71 3.41
2071 2082 7.111139 CGTATTCGACACAATTCTAACATGAC 58.889 38.462 0.00 0.00 39.71 3.06
2072 2083 6.809689 ACGTATTCGACACAATTCTAACATGA 59.190 34.615 0.00 0.00 40.62 3.07
2073 2084 6.894517 CACGTATTCGACACAATTCTAACATG 59.105 38.462 0.00 0.00 40.62 3.21
2074 2085 6.588756 ACACGTATTCGACACAATTCTAACAT 59.411 34.615 0.00 0.00 40.62 2.71
2075 2086 5.921976 ACACGTATTCGACACAATTCTAACA 59.078 36.000 0.00 0.00 40.62 2.41
2076 2087 6.129009 ACACACGTATTCGACACAATTCTAAC 60.129 38.462 0.00 0.00 40.62 2.34
2077 2088 5.921976 ACACACGTATTCGACACAATTCTAA 59.078 36.000 0.00 0.00 40.62 2.10
2078 2089 5.463286 ACACACGTATTCGACACAATTCTA 58.537 37.500 0.00 0.00 40.62 2.10
2079 2090 4.304110 ACACACGTATTCGACACAATTCT 58.696 39.130 0.00 0.00 40.62 2.40
2080 2091 4.640805 ACACACGTATTCGACACAATTC 57.359 40.909 0.00 0.00 40.62 2.17
2081 2092 4.983538 TGTACACACGTATTCGACACAATT 59.016 37.500 0.00 0.00 40.62 2.32
2082 2093 4.548494 TGTACACACGTATTCGACACAAT 58.452 39.130 0.00 0.00 40.62 2.71
2083 2094 3.962423 TGTACACACGTATTCGACACAA 58.038 40.909 0.00 0.00 40.62 3.33
2084 2095 3.250521 TCTGTACACACGTATTCGACACA 59.749 43.478 0.00 0.00 40.62 3.72
2085 2096 3.813800 TCTGTACACACGTATTCGACAC 58.186 45.455 0.00 0.00 40.62 3.67
2086 2097 3.499537 ACTCTGTACACACGTATTCGACA 59.500 43.478 0.00 0.00 40.62 4.35
2087 2098 4.075763 ACTCTGTACACACGTATTCGAC 57.924 45.455 0.00 0.00 40.62 4.20
2088 2099 4.754372 AACTCTGTACACACGTATTCGA 57.246 40.909 0.00 0.00 40.62 3.71
2089 2100 5.817616 AAAACTCTGTACACACGTATTCG 57.182 39.130 0.00 0.00 43.34 3.34
2091 2102 9.918630 AGTATTAAAACTCTGTACACACGTATT 57.081 29.630 0.00 0.00 0.00 1.89
2094 2105 9.918630 AATAGTATTAAAACTCTGTACACACGT 57.081 29.630 0.00 0.00 0.00 4.49
2115 2126 8.598041 CCCTCTGCTAATTATAAGTCCAATAGT 58.402 37.037 0.00 0.00 0.00 2.12
2116 2127 8.598041 ACCCTCTGCTAATTATAAGTCCAATAG 58.402 37.037 0.00 0.00 0.00 1.73
2117 2128 8.506196 ACCCTCTGCTAATTATAAGTCCAATA 57.494 34.615 0.00 0.00 0.00 1.90
2118 2129 7.394144 ACCCTCTGCTAATTATAAGTCCAAT 57.606 36.000 0.00 0.00 0.00 3.16
2119 2130 6.824958 ACCCTCTGCTAATTATAAGTCCAA 57.175 37.500 0.00 0.00 0.00 3.53
2120 2131 6.824958 AACCCTCTGCTAATTATAAGTCCA 57.175 37.500 0.00 0.00 0.00 4.02
2121 2132 7.016366 ACCTAACCCTCTGCTAATTATAAGTCC 59.984 40.741 0.00 0.00 0.00 3.85
2122 2133 7.873505 CACCTAACCCTCTGCTAATTATAAGTC 59.126 40.741 0.00 0.00 0.00 3.01
2123 2134 7.347485 ACACCTAACCCTCTGCTAATTATAAGT 59.653 37.037 0.00 0.00 0.00 2.24
2124 2135 7.736893 ACACCTAACCCTCTGCTAATTATAAG 58.263 38.462 0.00 0.00 0.00 1.73
2125 2136 7.567622 AGACACCTAACCCTCTGCTAATTATAA 59.432 37.037 0.00 0.00 0.00 0.98
2126 2137 7.015292 CAGACACCTAACCCTCTGCTAATTATA 59.985 40.741 0.00 0.00 0.00 0.98
2127 2138 5.905913 AGACACCTAACCCTCTGCTAATTAT 59.094 40.000 0.00 0.00 0.00 1.28
2128 2139 5.128827 CAGACACCTAACCCTCTGCTAATTA 59.871 44.000 0.00 0.00 0.00 1.40
2129 2140 4.080863 CAGACACCTAACCCTCTGCTAATT 60.081 45.833 0.00 0.00 0.00 1.40
2130 2141 3.452627 CAGACACCTAACCCTCTGCTAAT 59.547 47.826 0.00 0.00 0.00 1.73
2131 2142 2.832129 CAGACACCTAACCCTCTGCTAA 59.168 50.000 0.00 0.00 0.00 3.09
2132 2143 2.042569 TCAGACACCTAACCCTCTGCTA 59.957 50.000 0.00 0.00 31.83 3.49
2133 2144 1.203187 TCAGACACCTAACCCTCTGCT 60.203 52.381 0.00 0.00 31.83 4.24
2134 2145 1.205893 CTCAGACACCTAACCCTCTGC 59.794 57.143 0.00 0.00 31.83 4.26
2135 2146 2.494073 GACTCAGACACCTAACCCTCTG 59.506 54.545 0.00 0.00 32.86 3.35
2136 2147 2.810164 GACTCAGACACCTAACCCTCT 58.190 52.381 0.00 0.00 0.00 3.69
2137 2148 1.473278 CGACTCAGACACCTAACCCTC 59.527 57.143 0.00 0.00 0.00 4.30
2138 2149 1.075050 TCGACTCAGACACCTAACCCT 59.925 52.381 0.00 0.00 0.00 4.34
2139 2150 1.542492 TCGACTCAGACACCTAACCC 58.458 55.000 0.00 0.00 0.00 4.11
2140 2151 2.295349 TGTTCGACTCAGACACCTAACC 59.705 50.000 0.00 0.00 0.00 2.85
2141 2152 3.306818 GTGTTCGACTCAGACACCTAAC 58.693 50.000 6.12 0.00 0.00 2.34
2142 2153 2.031420 CGTGTTCGACTCAGACACCTAA 60.031 50.000 10.81 0.00 39.71 2.69
2143 2154 1.534163 CGTGTTCGACTCAGACACCTA 59.466 52.381 10.81 0.00 39.71 3.08
2144 2155 0.311165 CGTGTTCGACTCAGACACCT 59.689 55.000 10.81 0.00 39.71 4.00
2145 2156 0.030369 ACGTGTTCGACTCAGACACC 59.970 55.000 10.81 0.00 40.62 4.16
2146 2157 1.121240 CACGTGTTCGACTCAGACAC 58.879 55.000 7.58 7.16 40.62 3.67
2147 2158 0.736636 ACACGTGTTCGACTCAGACA 59.263 50.000 17.22 0.00 40.62 3.41
2148 2159 2.675767 TACACGTGTTCGACTCAGAC 57.324 50.000 28.55 0.00 40.62 3.51
2149 2160 2.287188 GGTTACACGTGTTCGACTCAGA 60.287 50.000 28.55 1.54 40.62 3.27
2150 2161 2.049228 GGTTACACGTGTTCGACTCAG 58.951 52.381 28.55 0.00 40.62 3.35
2151 2162 1.269206 GGGTTACACGTGTTCGACTCA 60.269 52.381 28.55 3.28 40.62 3.41
2152 2163 1.269206 TGGGTTACACGTGTTCGACTC 60.269 52.381 28.55 21.71 40.62 3.36
2153 2164 0.746063 TGGGTTACACGTGTTCGACT 59.254 50.000 28.55 2.39 40.62 4.18
2154 2165 1.134226 CTGGGTTACACGTGTTCGAC 58.866 55.000 28.55 21.15 40.62 4.20
2155 2166 0.032403 CCTGGGTTACACGTGTTCGA 59.968 55.000 28.55 10.73 40.62 3.71
2156 2167 1.562575 GCCTGGGTTACACGTGTTCG 61.563 60.000 28.55 8.80 43.34 3.95
2157 2168 1.232621 GGCCTGGGTTACACGTGTTC 61.233 60.000 28.55 19.25 0.00 3.18
2158 2169 1.228033 GGCCTGGGTTACACGTGTT 60.228 57.895 28.55 11.17 0.00 3.32
2159 2170 0.832983 TAGGCCTGGGTTACACGTGT 60.833 55.000 26.52 26.52 0.00 4.49
2160 2171 0.322322 TTAGGCCTGGGTTACACGTG 59.678 55.000 17.99 15.48 0.00 4.49
2161 2172 1.282382 ATTAGGCCTGGGTTACACGT 58.718 50.000 17.99 0.00 0.00 4.49
2162 2173 3.764237 ATATTAGGCCTGGGTTACACG 57.236 47.619 17.99 0.00 0.00 4.49
2163 2174 7.827729 CCTTTATATATTAGGCCTGGGTTACAC 59.172 40.741 17.99 0.00 0.00 2.90
2164 2175 7.529901 GCCTTTATATATTAGGCCTGGGTTACA 60.530 40.741 17.99 0.00 46.94 2.41
2165 2176 6.827251 GCCTTTATATATTAGGCCTGGGTTAC 59.173 42.308 17.99 0.00 46.94 2.50
2166 2177 6.965607 GCCTTTATATATTAGGCCTGGGTTA 58.034 40.000 17.99 2.43 46.94 2.85
2167 2178 5.827756 GCCTTTATATATTAGGCCTGGGTT 58.172 41.667 17.99 0.00 46.94 4.11
2168 2179 5.452341 GCCTTTATATATTAGGCCTGGGT 57.548 43.478 17.99 3.27 46.94 4.51
2174 2185 9.666574 ACCCCATGGTGCCTTTATATATTAGGC 62.667 44.444 22.53 22.53 45.58 3.93
2175 2186 6.129179 CCCCATGGTGCCTTTATATATTAGG 58.871 44.000 11.73 8.52 0.00 2.69
2176 2187 6.731467 ACCCCATGGTGCCTTTATATATTAG 58.269 40.000 11.73 0.00 45.58 1.73
2177 2188 6.728366 ACCCCATGGTGCCTTTATATATTA 57.272 37.500 11.73 0.00 45.58 0.98
2178 2189 5.615335 ACCCCATGGTGCCTTTATATATT 57.385 39.130 11.73 0.00 45.58 1.28
2192 2203 3.117512 AGTCTATTTTGGCTACCCCATGG 60.118 47.826 4.14 4.14 44.89 3.66
2193 2204 4.170468 AGTCTATTTTGGCTACCCCATG 57.830 45.455 0.00 0.00 44.89 3.66
2194 2205 5.224441 TCTAGTCTATTTTGGCTACCCCAT 58.776 41.667 0.00 0.00 44.89 4.00
2195 2206 4.627015 TCTAGTCTATTTTGGCTACCCCA 58.373 43.478 0.00 0.00 43.51 4.96
2196 2207 4.900054 TCTCTAGTCTATTTTGGCTACCCC 59.100 45.833 0.00 0.00 0.00 4.95
2197 2208 6.481434 TTCTCTAGTCTATTTTGGCTACCC 57.519 41.667 0.00 0.00 0.00 3.69
2198 2209 7.011576 GCTTTTCTCTAGTCTATTTTGGCTACC 59.988 40.741 0.00 0.00 0.00 3.18
2199 2210 7.766738 AGCTTTTCTCTAGTCTATTTTGGCTAC 59.233 37.037 0.00 0.00 0.00 3.58
2200 2211 7.766278 CAGCTTTTCTCTAGTCTATTTTGGCTA 59.234 37.037 0.00 0.00 0.00 3.93
2201 2212 6.597280 CAGCTTTTCTCTAGTCTATTTTGGCT 59.403 38.462 0.00 0.00 0.00 4.75
2202 2213 6.183360 CCAGCTTTTCTCTAGTCTATTTTGGC 60.183 42.308 0.00 0.00 0.00 4.52
2203 2214 6.881602 ACCAGCTTTTCTCTAGTCTATTTTGG 59.118 38.462 0.00 0.00 0.00 3.28
2204 2215 7.913674 ACCAGCTTTTCTCTAGTCTATTTTG 57.086 36.000 0.00 0.00 0.00 2.44
2205 2216 8.261522 CCTACCAGCTTTTCTCTAGTCTATTTT 58.738 37.037 0.00 0.00 0.00 1.82
2206 2217 7.633991 GCCTACCAGCTTTTCTCTAGTCTATTT 60.634 40.741 0.00 0.00 0.00 1.40
2207 2218 6.183360 GCCTACCAGCTTTTCTCTAGTCTATT 60.183 42.308 0.00 0.00 0.00 1.73
2208 2219 5.303333 GCCTACCAGCTTTTCTCTAGTCTAT 59.697 44.000 0.00 0.00 0.00 1.98
2209 2220 4.645588 GCCTACCAGCTTTTCTCTAGTCTA 59.354 45.833 0.00 0.00 0.00 2.59
2210 2221 3.449377 GCCTACCAGCTTTTCTCTAGTCT 59.551 47.826 0.00 0.00 0.00 3.24
2211 2222 3.449377 AGCCTACCAGCTTTTCTCTAGTC 59.551 47.826 0.00 0.00 41.41 2.59
2212 2223 3.445987 AGCCTACCAGCTTTTCTCTAGT 58.554 45.455 0.00 0.00 41.41 2.57
2213 2224 4.890581 TCTAGCCTACCAGCTTTTCTCTAG 59.109 45.833 0.00 0.00 41.41 2.43
2214 2225 4.645588 GTCTAGCCTACCAGCTTTTCTCTA 59.354 45.833 0.00 0.00 41.41 2.43
2215 2226 3.449377 GTCTAGCCTACCAGCTTTTCTCT 59.551 47.826 0.00 0.00 41.41 3.10
2216 2227 3.195825 TGTCTAGCCTACCAGCTTTTCTC 59.804 47.826 0.00 0.00 41.41 2.87
2217 2228 3.173965 TGTCTAGCCTACCAGCTTTTCT 58.826 45.455 0.00 0.00 41.41 2.52
2218 2229 3.611766 TGTCTAGCCTACCAGCTTTTC 57.388 47.619 0.00 0.00 41.41 2.29
2219 2230 3.519510 TCATGTCTAGCCTACCAGCTTTT 59.480 43.478 0.00 0.00 41.41 2.27
2220 2231 3.107601 TCATGTCTAGCCTACCAGCTTT 58.892 45.455 0.00 0.00 41.41 3.51
2221 2232 2.697751 CTCATGTCTAGCCTACCAGCTT 59.302 50.000 0.00 0.00 41.41 3.74
2223 2234 2.311463 TCTCATGTCTAGCCTACCAGC 58.689 52.381 0.00 0.00 0.00 4.85
2224 2235 4.022416 GTGATCTCATGTCTAGCCTACCAG 60.022 50.000 0.00 0.00 0.00 4.00
2225 2236 3.891977 GTGATCTCATGTCTAGCCTACCA 59.108 47.826 0.00 0.00 0.00 3.25
2226 2237 3.057876 CGTGATCTCATGTCTAGCCTACC 60.058 52.174 0.00 0.00 0.00 3.18
2227 2238 3.815962 TCGTGATCTCATGTCTAGCCTAC 59.184 47.826 0.00 0.00 34.59 3.18
2228 2239 4.068599 CTCGTGATCTCATGTCTAGCCTA 58.931 47.826 0.00 0.00 34.59 3.93
2229 2240 2.884012 CTCGTGATCTCATGTCTAGCCT 59.116 50.000 0.00 0.00 34.59 4.58
2230 2241 2.881513 TCTCGTGATCTCATGTCTAGCC 59.118 50.000 0.00 0.00 34.59 3.93
2231 2242 3.058293 CCTCTCGTGATCTCATGTCTAGC 60.058 52.174 0.00 0.00 34.59 3.42
2232 2243 3.501828 CCCTCTCGTGATCTCATGTCTAG 59.498 52.174 0.00 0.00 34.59 2.43
2233 2244 3.136626 TCCCTCTCGTGATCTCATGTCTA 59.863 47.826 0.00 0.00 34.59 2.59
2234 2245 2.092158 TCCCTCTCGTGATCTCATGTCT 60.092 50.000 0.00 0.00 34.59 3.41
2235 2246 2.302260 TCCCTCTCGTGATCTCATGTC 58.698 52.381 0.00 0.00 34.59 3.06
2236 2247 2.443958 TCCCTCTCGTGATCTCATGT 57.556 50.000 0.00 0.00 34.59 3.21
2237 2248 2.029200 CCATCCCTCTCGTGATCTCATG 60.029 54.545 0.00 0.00 0.00 3.07
2238 2249 2.246469 CCATCCCTCTCGTGATCTCAT 58.754 52.381 0.00 0.00 0.00 2.90
2239 2250 1.063642 ACCATCCCTCTCGTGATCTCA 60.064 52.381 0.00 0.00 0.00 3.27
2240 2251 1.611491 GACCATCCCTCTCGTGATCTC 59.389 57.143 0.00 0.00 0.00 2.75
2241 2252 1.698506 GACCATCCCTCTCGTGATCT 58.301 55.000 0.00 0.00 0.00 2.75
2242 2253 0.676736 GGACCATCCCTCTCGTGATC 59.323 60.000 0.00 0.00 0.00 2.92
2243 2254 0.032117 TGGACCATCCCTCTCGTGAT 60.032 55.000 0.00 0.00 35.03 3.06
2244 2255 0.684479 CTGGACCATCCCTCTCGTGA 60.684 60.000 0.00 0.00 35.03 4.35
2245 2256 1.680522 CCTGGACCATCCCTCTCGTG 61.681 65.000 0.00 0.00 35.03 4.35
2246 2257 1.381872 CCTGGACCATCCCTCTCGT 60.382 63.158 0.00 0.00 35.03 4.18
2247 2258 2.801631 GCCTGGACCATCCCTCTCG 61.802 68.421 0.00 0.00 35.03 4.04
2248 2259 1.383803 AGCCTGGACCATCCCTCTC 60.384 63.158 0.00 0.00 35.03 3.20
2249 2260 1.383803 GAGCCTGGACCATCCCTCT 60.384 63.158 0.00 0.00 35.03 3.69
2250 2261 2.447714 GGAGCCTGGACCATCCCTC 61.448 68.421 0.00 1.14 35.03 4.30
2251 2262 2.367512 GGAGCCTGGACCATCCCT 60.368 66.667 0.00 0.00 35.03 4.20
2252 2263 3.866582 CGGAGCCTGGACCATCCC 61.867 72.222 6.98 0.40 35.03 3.85
2253 2264 3.866582 CCGGAGCCTGGACCATCC 61.867 72.222 0.00 0.00 36.96 3.51
2254 2265 3.083997 ACCGGAGCCTGGACCATC 61.084 66.667 9.46 0.00 0.00 3.51
2255 2266 3.402681 CACCGGAGCCTGGACCAT 61.403 66.667 9.46 0.00 0.00 3.55
2267 2278 4.864334 GATCAGCCCTGCCACCGG 62.864 72.222 0.00 0.00 0.00 5.28
2269 2280 4.864334 CCGATCAGCCCTGCCACC 62.864 72.222 0.00 0.00 0.00 4.61
2270 2281 3.785859 TCCGATCAGCCCTGCCAC 61.786 66.667 0.00 0.00 0.00 5.01
2271 2282 3.785859 GTCCGATCAGCCCTGCCA 61.786 66.667 0.00 0.00 0.00 4.92
2272 2283 4.554036 GGTCCGATCAGCCCTGCC 62.554 72.222 0.00 0.00 0.00 4.85
2273 2284 4.899239 CGGTCCGATCAGCCCTGC 62.899 72.222 4.91 0.00 0.00 4.85
2274 2285 4.227134 CCGGTCCGATCAGCCCTG 62.227 72.222 14.39 0.00 0.00 4.45
2278 2289 4.899239 CTGGCCGGTCCGATCAGC 62.899 72.222 14.39 7.32 37.80 4.26
2279 2290 4.227134 CCTGGCCGGTCCGATCAG 62.227 72.222 14.39 18.09 37.80 2.90
2293 2304 4.087892 CTCGACCACCCTGCCCTG 62.088 72.222 0.00 0.00 0.00 4.45
2294 2305 3.625632 ATCTCGACCACCCTGCCCT 62.626 63.158 0.00 0.00 0.00 5.19
2295 2306 2.198304 AAATCTCGACCACCCTGCCC 62.198 60.000 0.00 0.00 0.00 5.36
2296 2307 1.026718 CAAATCTCGACCACCCTGCC 61.027 60.000 0.00 0.00 0.00 4.85
2297 2308 0.321653 ACAAATCTCGACCACCCTGC 60.322 55.000 0.00 0.00 0.00 4.85
2298 2309 1.276421 AGACAAATCTCGACCACCCTG 59.724 52.381 0.00 0.00 0.00 4.45
2299 2310 1.276421 CAGACAAATCTCGACCACCCT 59.724 52.381 0.00 0.00 30.42 4.34
2300 2311 1.275291 TCAGACAAATCTCGACCACCC 59.725 52.381 0.00 0.00 30.42 4.61
2301 2312 2.743636 TCAGACAAATCTCGACCACC 57.256 50.000 0.00 0.00 30.42 4.61
2302 2313 2.932614 CCATCAGACAAATCTCGACCAC 59.067 50.000 0.00 0.00 30.42 4.16
2303 2314 2.567169 ACCATCAGACAAATCTCGACCA 59.433 45.455 0.00 0.00 30.42 4.02
2304 2315 3.118956 AGACCATCAGACAAATCTCGACC 60.119 47.826 0.00 0.00 30.42 4.79
2305 2316 4.109050 GAGACCATCAGACAAATCTCGAC 58.891 47.826 0.00 0.00 30.42 4.20
2306 2317 4.377839 GAGACCATCAGACAAATCTCGA 57.622 45.455 0.00 0.00 30.42 4.04
2307 2318 3.111838 CGAGACCATCAGACAAATCTCG 58.888 50.000 7.02 7.02 46.45 4.04
2308 2319 3.118956 ACCGAGACCATCAGACAAATCTC 60.119 47.826 0.00 0.00 30.42 2.75
2309 2320 2.834549 ACCGAGACCATCAGACAAATCT 59.165 45.455 0.00 0.00 34.57 2.40
2310 2321 2.932614 CACCGAGACCATCAGACAAATC 59.067 50.000 0.00 0.00 0.00 2.17
2311 2322 2.303022 ACACCGAGACCATCAGACAAAT 59.697 45.455 0.00 0.00 0.00 2.32
2312 2323 1.691976 ACACCGAGACCATCAGACAAA 59.308 47.619 0.00 0.00 0.00 2.83
2313 2324 1.000843 CACACCGAGACCATCAGACAA 59.999 52.381 0.00 0.00 0.00 3.18
2314 2325 0.603065 CACACCGAGACCATCAGACA 59.397 55.000 0.00 0.00 0.00 3.41
2315 2326 0.737715 GCACACCGAGACCATCAGAC 60.738 60.000 0.00 0.00 0.00 3.51
2316 2327 0.900182 AGCACACCGAGACCATCAGA 60.900 55.000 0.00 0.00 0.00 3.27
2317 2328 0.036952 AAGCACACCGAGACCATCAG 60.037 55.000 0.00 0.00 0.00 2.90
2318 2329 0.396435 AAAGCACACCGAGACCATCA 59.604 50.000 0.00 0.00 0.00 3.07
2319 2330 1.079503 GAAAGCACACCGAGACCATC 58.920 55.000 0.00 0.00 0.00 3.51
2320 2331 0.687354 AGAAAGCACACCGAGACCAT 59.313 50.000 0.00 0.00 0.00 3.55
2321 2332 0.033504 GAGAAAGCACACCGAGACCA 59.966 55.000 0.00 0.00 0.00 4.02
2322 2333 0.318762 AGAGAAAGCACACCGAGACC 59.681 55.000 0.00 0.00 0.00 3.85
2323 2334 1.269831 ACAGAGAAAGCACACCGAGAC 60.270 52.381 0.00 0.00 0.00 3.36
2324 2335 1.040646 ACAGAGAAAGCACACCGAGA 58.959 50.000 0.00 0.00 0.00 4.04
2325 2336 2.724977 TACAGAGAAAGCACACCGAG 57.275 50.000 0.00 0.00 0.00 4.63
2326 2337 2.101750 TGTTACAGAGAAAGCACACCGA 59.898 45.455 0.00 0.00 0.00 4.69
2327 2338 2.221055 GTGTTACAGAGAAAGCACACCG 59.779 50.000 0.00 0.00 0.00 4.94
2328 2339 2.548480 GGTGTTACAGAGAAAGCACACC 59.452 50.000 3.64 3.64 45.45 4.16
2329 2340 2.548480 GGGTGTTACAGAGAAAGCACAC 59.452 50.000 0.00 0.00 34.93 3.82
2330 2341 2.438021 AGGGTGTTACAGAGAAAGCACA 59.562 45.455 0.00 0.00 0.00 4.57
2331 2342 2.808543 CAGGGTGTTACAGAGAAAGCAC 59.191 50.000 0.00 0.00 0.00 4.40
2332 2343 2.224523 CCAGGGTGTTACAGAGAAAGCA 60.225 50.000 0.00 0.00 0.00 3.91
2333 2344 2.224548 ACCAGGGTGTTACAGAGAAAGC 60.225 50.000 0.00 0.00 0.00 3.51
2334 2345 3.771577 ACCAGGGTGTTACAGAGAAAG 57.228 47.619 0.00 0.00 0.00 2.62
2335 2346 4.513406 AAACCAGGGTGTTACAGAGAAA 57.487 40.909 0.00 0.00 0.00 2.52
2336 2347 4.457466 GAAAACCAGGGTGTTACAGAGAA 58.543 43.478 0.00 0.00 0.00 2.87
2337 2348 3.493699 CGAAAACCAGGGTGTTACAGAGA 60.494 47.826 0.00 0.00 0.00 3.10
2338 2349 2.806244 CGAAAACCAGGGTGTTACAGAG 59.194 50.000 0.00 0.00 0.00 3.35
2339 2350 2.841215 CGAAAACCAGGGTGTTACAGA 58.159 47.619 0.00 0.00 0.00 3.41
2340 2351 1.265905 GCGAAAACCAGGGTGTTACAG 59.734 52.381 0.00 0.00 0.00 2.74
2405 2421 6.491745 AGAGCTAGAGAAATCCGATAACATCA 59.508 38.462 0.00 0.00 0.00 3.07
2487 2507 1.903404 GTGGCAAGGTTGGACTGGG 60.903 63.158 0.00 0.00 0.00 4.45
2542 2562 2.334838 CTTCCGGTAACTCGAAAGGTG 58.665 52.381 0.00 0.00 0.00 4.00
2548 2568 1.273327 GTTTCCCTTCCGGTAACTCGA 59.727 52.381 0.00 0.00 38.53 4.04
2580 2601 1.142936 ACCGGGGTTCCTTTGTAACT 58.857 50.000 6.32 0.00 0.00 2.24
2597 2620 1.683385 AGCAACAGAGCAAAGGAAACC 59.317 47.619 0.00 0.00 36.85 3.27
2598 2621 3.375642 GAAGCAACAGAGCAAAGGAAAC 58.624 45.455 0.00 0.00 36.85 2.78
2608 2631 4.363138 GAAAAGTTTGGGAAGCAACAGAG 58.637 43.478 0.00 0.00 0.00 3.35
2617 2640 4.904251 TGATCATTGGGAAAAGTTTGGGAA 59.096 37.500 0.00 0.00 0.00 3.97
2634 2657 9.347240 CTGGTTTTACAAAGATAGGATGATCAT 57.653 33.333 8.25 8.25 0.00 2.45
2656 2679 5.366186 TGGCAATATTTTTGCATATCCTGGT 59.634 36.000 12.81 0.00 46.58 4.00
2659 2682 5.993441 GCTTGGCAATATTTTTGCATATCCT 59.007 36.000 12.81 0.00 46.58 3.24
2745 2771 8.972662 TTTGGACATGGATAGATATCTTCCTA 57.027 34.615 23.20 13.13 33.28 2.94
2751 2777 8.944029 CATGAACTTTGGACATGGATAGATATC 58.056 37.037 0.00 0.00 38.07 1.63
2764 2791 5.519927 CCACAAGTTTTCATGAACTTTGGAC 59.480 40.000 21.84 11.32 45.05 4.02
2870 2898 2.641305 GCCCAAAATGCAATATTGGCA 58.359 42.857 17.02 14.62 46.66 4.92
2917 2945 3.986996 ATTTGGGATTTTTCCTGGCTG 57.013 42.857 0.00 0.00 0.00 4.85
2976 3005 7.504926 ACTATGGAACTTGGGTACTTGATAA 57.495 36.000 0.00 0.00 0.00 1.75
2977 3006 7.181305 TGAACTATGGAACTTGGGTACTTGATA 59.819 37.037 0.00 0.00 0.00 2.15
2984 3013 6.195600 ACTTTGAACTATGGAACTTGGGTA 57.804 37.500 0.00 0.00 0.00 3.69
3016 3045 5.945191 TGGACAGAATCTGCAAATTGATGTA 59.055 36.000 10.62 0.00 34.37 2.29
3030 3059 1.909700 TTGCCCAACTGGACAGAATC 58.090 50.000 6.29 0.00 37.39 2.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.