Multiple sequence alignment - TraesCS6B01G019900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G019900 chr6B 100.000 3449 0 0 1 3449 12042804 12046252 0.000000e+00 6370.0
1 TraesCS6B01G019900 chr5B 97.361 1895 42 5 299 2190 74338496 74336607 0.000000e+00 3216.0
2 TraesCS6B01G019900 chr5B 93.878 49 3 0 3308 3356 479037276 479037228 1.330000e-09 75.0
3 TraesCS6B01G019900 chr2D 87.389 1919 194 25 298 2180 484797796 484795890 0.000000e+00 2159.0
4 TraesCS6B01G019900 chr2D 87.399 865 103 4 2451 3313 484784684 484783824 0.000000e+00 989.0
5 TraesCS6B01G019900 chr2D 86.165 665 86 4 2651 3313 484783821 484783161 0.000000e+00 713.0
6 TraesCS6B01G019900 chr2D 93.103 58 4 0 241 298 441081263 441081320 6.130000e-13 86.1
7 TraesCS6B01G019900 chr6D 89.172 1533 126 19 677 2180 26663525 26662004 0.000000e+00 1875.0
8 TraesCS6B01G019900 chr6D 86.907 527 50 10 2310 2819 26626916 26626392 1.070000e-159 573.0
9 TraesCS6B01G019900 chr6D 83.554 529 76 9 2812 3335 26611536 26611014 5.180000e-133 484.0
10 TraesCS6B01G019900 chr6D 90.909 176 13 2 1 176 6759637 6759465 2.070000e-57 233.0
11 TraesCS6B01G019900 chr6D 92.308 130 8 1 43 172 6564498 6564625 2.110000e-42 183.0
12 TraesCS6B01G019900 chr6D 91.379 58 5 0 241 298 381355412 381355469 2.850000e-11 80.5
13 TraesCS6B01G019900 chr6D 94.231 52 2 1 3308 3359 452939055 452939005 1.030000e-10 78.7
14 TraesCS6B01G019900 chr6D 95.745 47 2 0 3308 3354 306876296 306876250 3.690000e-10 76.8
15 TraesCS6B01G019900 chr7A 81.613 1947 282 49 293 2180 142137860 142139789 0.000000e+00 1543.0
16 TraesCS6B01G019900 chr7A 81.398 1946 288 47 293 2180 141268482 141270411 0.000000e+00 1520.0
17 TraesCS6B01G019900 chr7A 81.388 1945 290 50 293 2180 141574152 141576081 0.000000e+00 1520.0
18 TraesCS6B01G019900 chr7A 81.067 1949 288 50 293 2180 141854965 141856893 0.000000e+00 1480.0
19 TraesCS6B01G019900 chr7A 80.923 1950 294 49 293 2180 140991288 140993221 0.000000e+00 1469.0
20 TraesCS6B01G019900 chr7A 81.528 877 142 14 2426 3295 140737779 140738642 0.000000e+00 704.0
21 TraesCS6B01G019900 chr7A 81.385 881 144 15 2422 3295 141286241 141287108 0.000000e+00 701.0
22 TraesCS6B01G019900 chr7A 81.385 881 143 16 2422 3295 141008902 141009768 0.000000e+00 699.0
23 TraesCS6B01G019900 chr7A 81.023 880 149 14 2422 3295 141876961 141877828 0.000000e+00 684.0
24 TraesCS6B01G019900 chr7A 81.348 831 140 12 2422 3247 141602076 141602896 0.000000e+00 662.0
25 TraesCS6B01G019900 chr7A 83.866 595 95 1 2426 3019 142155900 142156494 1.800000e-157 566.0
26 TraesCS6B01G019900 chr7A 80.976 205 31 5 3095 3295 142156532 142156732 4.610000e-34 156.0
27 TraesCS6B01G019900 chr7A 92.727 55 3 1 3299 3352 639594984 639595038 1.030000e-10 78.7
28 TraesCS6B01G019900 chr7D 86.015 522 64 8 2433 2950 383895148 383895664 5.030000e-153 551.0
29 TraesCS6B01G019900 chr7B 81.285 529 75 10 2786 3313 613596004 613596509 1.150000e-109 407.0
30 TraesCS6B01G019900 chr7B 90.909 55 3 2 3299 3352 714481503 714481556 4.770000e-09 73.1
31 TraesCS6B01G019900 chr1A 77.934 426 76 14 2879 3298 557867433 557867020 2.060000e-62 250.0
32 TraesCS6B01G019900 chr6A 90.341 176 15 2 1 176 6202438 6202265 2.680000e-56 230.0
33 TraesCS6B01G019900 chr6A 91.935 62 5 0 236 297 198073598 198073659 1.710000e-13 87.9
34 TraesCS6B01G019900 chr2A 73.474 475 99 19 2442 2894 49436868 49436399 1.660000e-33 154.0
35 TraesCS6B01G019900 chr2A 91.379 58 5 0 241 298 68814224 68814281 2.850000e-11 80.5
36 TraesCS6B01G019900 chr3D 94.828 58 3 0 241 298 362072409 362072352 1.320000e-14 91.6
37 TraesCS6B01G019900 chr5A 89.552 67 5 2 232 298 7109633 7109697 2.210000e-12 84.2
38 TraesCS6B01G019900 chr5A 90.476 63 4 2 237 298 45001833 45001894 7.930000e-12 82.4
39 TraesCS6B01G019900 chr5A 97.826 46 1 0 3308 3353 597672307 597672262 2.850000e-11 80.5
40 TraesCS6B01G019900 chr2B 97.778 45 1 0 3308 3352 230293557 230293513 1.030000e-10 78.7
41 TraesCS6B01G019900 chr4A 91.071 56 5 0 241 296 640248421 640248476 3.690000e-10 76.8
42 TraesCS6B01G019900 chr3A 90.000 60 5 1 237 296 54200985 54200927 3.690000e-10 76.8
43 TraesCS6B01G019900 chr3B 93.878 49 3 0 3308 3356 796016758 796016806 1.330000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G019900 chr6B 12042804 12046252 3448 False 6370 6370 100.000 1 3449 1 chr6B.!!$F1 3448
1 TraesCS6B01G019900 chr5B 74336607 74338496 1889 True 3216 3216 97.361 299 2190 1 chr5B.!!$R1 1891
2 TraesCS6B01G019900 chr2D 484795890 484797796 1906 True 2159 2159 87.389 298 2180 1 chr2D.!!$R1 1882
3 TraesCS6B01G019900 chr2D 484783161 484784684 1523 True 851 989 86.782 2451 3313 2 chr2D.!!$R2 862
4 TraesCS6B01G019900 chr6D 26662004 26663525 1521 True 1875 1875 89.172 677 2180 1 chr6D.!!$R4 1503
5 TraesCS6B01G019900 chr6D 26626392 26626916 524 True 573 573 86.907 2310 2819 1 chr6D.!!$R3 509
6 TraesCS6B01G019900 chr6D 26611014 26611536 522 True 484 484 83.554 2812 3335 1 chr6D.!!$R2 523
7 TraesCS6B01G019900 chr7A 142137860 142139789 1929 False 1543 1543 81.613 293 2180 1 chr7A.!!$F10 1887
8 TraesCS6B01G019900 chr7A 141268482 141270411 1929 False 1520 1520 81.398 293 2180 1 chr7A.!!$F4 1887
9 TraesCS6B01G019900 chr7A 141574152 141576081 1929 False 1520 1520 81.388 293 2180 1 chr7A.!!$F6 1887
10 TraesCS6B01G019900 chr7A 141854965 141856893 1928 False 1480 1480 81.067 293 2180 1 chr7A.!!$F8 1887
11 TraesCS6B01G019900 chr7A 140991288 140993221 1933 False 1469 1469 80.923 293 2180 1 chr7A.!!$F2 1887
12 TraesCS6B01G019900 chr7A 140737779 140738642 863 False 704 704 81.528 2426 3295 1 chr7A.!!$F1 869
13 TraesCS6B01G019900 chr7A 141286241 141287108 867 False 701 701 81.385 2422 3295 1 chr7A.!!$F5 873
14 TraesCS6B01G019900 chr7A 141008902 141009768 866 False 699 699 81.385 2422 3295 1 chr7A.!!$F3 873
15 TraesCS6B01G019900 chr7A 141876961 141877828 867 False 684 684 81.023 2422 3295 1 chr7A.!!$F9 873
16 TraesCS6B01G019900 chr7A 141602076 141602896 820 False 662 662 81.348 2422 3247 1 chr7A.!!$F7 825
17 TraesCS6B01G019900 chr7A 142155900 142156732 832 False 361 566 82.421 2426 3295 2 chr7A.!!$F12 869
18 TraesCS6B01G019900 chr7D 383895148 383895664 516 False 551 551 86.015 2433 2950 1 chr7D.!!$F1 517
19 TraesCS6B01G019900 chr7B 613596004 613596509 505 False 407 407 81.285 2786 3313 1 chr7B.!!$F1 527

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
144 145 0.035439 GACGATGGGTGTTGGGTGAT 60.035 55.0 0.00 0.00 0.00 3.06 F
889 925 0.825840 GGAGAGGCTGAGCGTCCTAT 60.826 60.0 21.95 5.33 43.36 2.57 F
2248 2311 0.180171 CCCACTCAATACGCCATCCA 59.820 55.0 0.00 0.00 0.00 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1498 1560 0.880441 TGGCATTGACAACGTGATGG 59.120 50.0 0.00 0.0 0.00 3.51 R
2278 2341 0.099436 GTTTTAGCGAGCCCATGCAG 59.901 55.0 0.00 0.0 41.13 4.41 R
3353 4099 0.024619 GCGTTCGAGCGGTGATTTAC 59.975 55.0 23.12 0.0 0.00 2.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.885230 TCCATCAGAAATTCATGTGTGTC 57.115 39.130 0.00 0.00 0.00 3.67
23 24 4.392754 TCCATCAGAAATTCATGTGTGTCG 59.607 41.667 0.00 0.00 0.00 4.35
24 25 4.437794 CCATCAGAAATTCATGTGTGTCGG 60.438 45.833 0.00 0.00 0.00 4.79
25 26 2.483877 TCAGAAATTCATGTGTGTCGGC 59.516 45.455 0.00 0.00 0.00 5.54
26 27 1.812571 AGAAATTCATGTGTGTCGGCC 59.187 47.619 0.00 0.00 0.00 6.13
27 28 1.812571 GAAATTCATGTGTGTCGGCCT 59.187 47.619 0.00 0.00 0.00 5.19
28 29 1.453155 AATTCATGTGTGTCGGCCTC 58.547 50.000 0.00 0.00 0.00 4.70
29 30 0.615331 ATTCATGTGTGTCGGCCTCT 59.385 50.000 0.00 0.00 0.00 3.69
30 31 0.396435 TTCATGTGTGTCGGCCTCTT 59.604 50.000 0.00 0.00 0.00 2.85
31 32 0.320683 TCATGTGTGTCGGCCTCTTG 60.321 55.000 0.00 0.00 0.00 3.02
32 33 1.672356 ATGTGTGTCGGCCTCTTGC 60.672 57.895 0.00 0.00 40.16 4.01
33 34 3.414700 GTGTGTCGGCCTCTTGCG 61.415 66.667 0.00 0.00 42.61 4.85
36 37 4.393155 TGTCGGCCTCTTGCGCAT 62.393 61.111 12.75 0.00 42.61 4.73
37 38 2.202878 GTCGGCCTCTTGCGCATA 60.203 61.111 12.75 0.92 42.61 3.14
38 39 2.202878 TCGGCCTCTTGCGCATAC 60.203 61.111 12.75 0.00 42.61 2.39
39 40 2.511373 CGGCCTCTTGCGCATACA 60.511 61.111 12.75 0.00 42.61 2.29
40 41 2.813179 CGGCCTCTTGCGCATACAC 61.813 63.158 12.75 0.00 42.61 2.90
41 42 1.745115 GGCCTCTTGCGCATACACA 60.745 57.895 12.75 0.00 42.61 3.72
42 43 1.425428 GCCTCTTGCGCATACACAC 59.575 57.895 12.75 0.00 0.00 3.82
43 44 1.021390 GCCTCTTGCGCATACACACT 61.021 55.000 12.75 0.00 0.00 3.55
44 45 1.442769 CCTCTTGCGCATACACACTT 58.557 50.000 12.75 0.00 0.00 3.16
45 46 1.129251 CCTCTTGCGCATACACACTTG 59.871 52.381 12.75 0.00 0.00 3.16
46 47 1.800586 CTCTTGCGCATACACACTTGT 59.199 47.619 12.75 0.00 40.02 3.16
47 48 2.217750 TCTTGCGCATACACACTTGTT 58.782 42.857 12.75 0.00 37.15 2.83
48 49 3.394719 TCTTGCGCATACACACTTGTTA 58.605 40.909 12.75 0.00 37.15 2.41
49 50 3.185594 TCTTGCGCATACACACTTGTTAC 59.814 43.478 12.75 0.00 37.15 2.50
50 51 2.761559 TGCGCATACACACTTGTTACT 58.238 42.857 5.66 0.00 37.15 2.24
51 52 2.734606 TGCGCATACACACTTGTTACTC 59.265 45.455 5.66 0.00 37.15 2.59
52 53 2.734606 GCGCATACACACTTGTTACTCA 59.265 45.455 0.30 0.00 37.15 3.41
53 54 3.370978 GCGCATACACACTTGTTACTCAT 59.629 43.478 0.30 0.00 37.15 2.90
54 55 4.724885 GCGCATACACACTTGTTACTCATG 60.725 45.833 0.30 0.00 37.15 3.07
55 56 4.388773 CGCATACACACTTGTTACTCATGT 59.611 41.667 0.00 0.00 37.15 3.21
56 57 5.575218 CGCATACACACTTGTTACTCATGTA 59.425 40.000 0.00 0.00 37.15 2.29
57 58 6.453791 CGCATACACACTTGTTACTCATGTAC 60.454 42.308 0.00 0.00 37.15 2.90
58 59 6.183360 GCATACACACTTGTTACTCATGTACC 60.183 42.308 0.00 0.00 37.15 3.34
59 60 4.304110 ACACACTTGTTACTCATGTACCG 58.696 43.478 0.00 0.00 33.92 4.02
60 61 4.202182 ACACACTTGTTACTCATGTACCGT 60.202 41.667 0.00 0.00 33.92 4.83
61 62 5.009911 ACACACTTGTTACTCATGTACCGTA 59.990 40.000 0.00 0.00 33.92 4.02
62 63 5.344128 CACACTTGTTACTCATGTACCGTAC 59.656 44.000 1.40 1.40 33.92 3.67
63 64 4.556135 CACTTGTTACTCATGTACCGTACG 59.444 45.833 8.69 8.69 33.92 3.67
64 65 4.216257 ACTTGTTACTCATGTACCGTACGT 59.784 41.667 15.21 5.08 33.58 3.57
65 66 5.411361 ACTTGTTACTCATGTACCGTACGTA 59.589 40.000 15.21 4.06 33.58 3.57
66 67 5.216566 TGTTACTCATGTACCGTACGTAC 57.783 43.478 15.90 15.90 46.53 3.67
67 68 4.094294 TGTTACTCATGTACCGTACGTACC 59.906 45.833 19.67 6.45 45.89 3.34
68 69 2.710377 ACTCATGTACCGTACGTACCA 58.290 47.619 19.67 11.95 45.89 3.25
69 70 3.282021 ACTCATGTACCGTACGTACCAT 58.718 45.455 19.67 13.63 45.89 3.55
70 71 3.065786 ACTCATGTACCGTACGTACCATG 59.934 47.826 24.83 24.83 45.89 3.66
71 72 2.121786 CATGTACCGTACGTACCATGC 58.878 52.381 21.63 14.21 45.89 4.06
72 73 1.172175 TGTACCGTACGTACCATGCA 58.828 50.000 19.67 14.04 45.89 3.96
73 74 1.750206 TGTACCGTACGTACCATGCAT 59.250 47.619 19.67 0.00 45.89 3.96
74 75 2.948315 TGTACCGTACGTACCATGCATA 59.052 45.455 19.67 1.38 45.89 3.14
75 76 3.569277 TGTACCGTACGTACCATGCATAT 59.431 43.478 19.67 0.00 45.89 1.78
76 77 3.021269 ACCGTACGTACCATGCATATG 57.979 47.619 19.67 0.00 0.00 1.78
77 78 1.724623 CCGTACGTACCATGCATATGC 59.275 52.381 21.09 21.09 42.50 3.14
78 79 7.997717 GTACCGTACGTACCATGCATATGCA 62.998 48.000 31.29 31.29 46.97 3.96
88 89 1.577922 GCATATGCATGGCACTCGG 59.422 57.895 22.84 0.00 43.04 4.63
89 90 1.859427 GCATATGCATGGCACTCGGG 61.859 60.000 22.84 0.00 43.04 5.14
90 91 0.250424 CATATGCATGGCACTCGGGA 60.250 55.000 10.16 0.00 43.04 5.14
91 92 0.473755 ATATGCATGGCACTCGGGAA 59.526 50.000 10.16 0.00 43.04 3.97
92 93 0.254462 TATGCATGGCACTCGGGAAA 59.746 50.000 10.16 0.00 43.04 3.13
93 94 1.315257 ATGCATGGCACTCGGGAAAC 61.315 55.000 0.00 0.00 43.04 2.78
94 95 1.971167 GCATGGCACTCGGGAAACA 60.971 57.895 0.00 0.00 0.00 2.83
95 96 1.875963 CATGGCACTCGGGAAACAC 59.124 57.895 0.00 0.00 0.00 3.32
96 97 1.671054 ATGGCACTCGGGAAACACG 60.671 57.895 0.00 0.00 0.00 4.49
97 98 2.029964 GGCACTCGGGAAACACGA 59.970 61.111 0.00 0.00 38.79 4.35
98 99 1.595929 GGCACTCGGGAAACACGAA 60.596 57.895 0.00 0.00 40.16 3.85
99 100 0.953960 GGCACTCGGGAAACACGAAT 60.954 55.000 0.00 0.00 40.16 3.34
100 101 0.872388 GCACTCGGGAAACACGAATT 59.128 50.000 0.00 0.00 40.16 2.17
101 102 2.070783 GCACTCGGGAAACACGAATTA 58.929 47.619 0.00 0.00 40.16 1.40
102 103 2.481185 GCACTCGGGAAACACGAATTAA 59.519 45.455 0.00 0.00 40.16 1.40
103 104 3.666111 GCACTCGGGAAACACGAATTAAC 60.666 47.826 0.00 0.00 40.16 2.01
104 105 3.744426 CACTCGGGAAACACGAATTAACT 59.256 43.478 0.00 0.00 40.16 2.24
105 106 4.925054 CACTCGGGAAACACGAATTAACTA 59.075 41.667 0.00 0.00 40.16 2.24
106 107 5.061808 CACTCGGGAAACACGAATTAACTAG 59.938 44.000 0.00 0.00 40.16 2.57
107 108 5.047802 ACTCGGGAAACACGAATTAACTAGA 60.048 40.000 0.00 0.00 40.16 2.43
108 109 5.782047 TCGGGAAACACGAATTAACTAGAA 58.218 37.500 0.00 0.00 37.42 2.10
109 110 5.865552 TCGGGAAACACGAATTAACTAGAAG 59.134 40.000 0.00 0.00 37.42 2.85
110 111 5.865552 CGGGAAACACGAATTAACTAGAAGA 59.134 40.000 0.00 0.00 0.00 2.87
111 112 6.034683 CGGGAAACACGAATTAACTAGAAGAG 59.965 42.308 0.00 0.00 0.00 2.85
112 113 6.183360 GGGAAACACGAATTAACTAGAAGAGC 60.183 42.308 0.00 0.00 0.00 4.09
113 114 6.367969 GGAAACACGAATTAACTAGAAGAGCA 59.632 38.462 0.00 0.00 0.00 4.26
114 115 7.064728 GGAAACACGAATTAACTAGAAGAGCAT 59.935 37.037 0.00 0.00 0.00 3.79
115 116 7.527084 AACACGAATTAACTAGAAGAGCATC 57.473 36.000 0.00 0.00 0.00 3.91
116 117 6.043411 ACACGAATTAACTAGAAGAGCATCC 58.957 40.000 0.00 0.00 33.66 3.51
117 118 6.042777 CACGAATTAACTAGAAGAGCATCCA 58.957 40.000 0.00 0.00 33.66 3.41
118 119 6.703607 CACGAATTAACTAGAAGAGCATCCAT 59.296 38.462 0.00 0.00 33.66 3.41
119 120 6.703607 ACGAATTAACTAGAAGAGCATCCATG 59.296 38.462 0.00 0.00 33.66 3.66
120 121 6.146837 CGAATTAACTAGAAGAGCATCCATGG 59.853 42.308 4.97 4.97 33.66 3.66
121 122 3.853355 AACTAGAAGAGCATCCATGGG 57.147 47.619 13.02 0.00 33.66 4.00
122 123 3.051940 ACTAGAAGAGCATCCATGGGA 57.948 47.619 13.02 0.00 33.66 4.37
123 124 2.971330 ACTAGAAGAGCATCCATGGGAG 59.029 50.000 13.02 5.91 34.05 4.30
124 125 1.138568 AGAAGAGCATCCATGGGAGG 58.861 55.000 13.02 2.73 36.49 4.30
125 126 0.110104 GAAGAGCATCCATGGGAGGG 59.890 60.000 13.02 0.01 33.70 4.30
126 127 0.327867 AAGAGCATCCATGGGAGGGA 60.328 55.000 13.02 0.00 39.14 4.20
127 128 1.059006 AGAGCATCCATGGGAGGGAC 61.059 60.000 13.02 0.00 37.23 4.46
128 129 2.111878 GCATCCATGGGAGGGACG 59.888 66.667 13.02 0.00 37.23 4.79
129 130 2.443394 GCATCCATGGGAGGGACGA 61.443 63.158 13.02 0.00 37.23 4.20
130 131 1.772819 GCATCCATGGGAGGGACGAT 61.773 60.000 13.02 0.00 37.23 3.73
131 132 0.035881 CATCCATGGGAGGGACGATG 59.964 60.000 13.02 1.38 37.23 3.84
132 133 1.130054 ATCCATGGGAGGGACGATGG 61.130 60.000 13.02 0.00 37.23 3.51
133 134 2.822637 CCATGGGAGGGACGATGGG 61.823 68.421 2.85 0.00 33.06 4.00
134 135 2.072487 CATGGGAGGGACGATGGGT 61.072 63.158 0.00 0.00 0.00 4.51
135 136 2.072487 ATGGGAGGGACGATGGGTG 61.072 63.158 0.00 0.00 0.00 4.61
136 137 2.687566 GGGAGGGACGATGGGTGT 60.688 66.667 0.00 0.00 0.00 4.16
137 138 2.298661 GGGAGGGACGATGGGTGTT 61.299 63.158 0.00 0.00 0.00 3.32
138 139 1.078426 GGAGGGACGATGGGTGTTG 60.078 63.158 0.00 0.00 0.00 3.33
139 140 1.078426 GAGGGACGATGGGTGTTGG 60.078 63.158 0.00 0.00 0.00 3.77
140 141 2.045340 GGGACGATGGGTGTTGGG 60.045 66.667 0.00 0.00 0.00 4.12
141 142 2.754375 GGACGATGGGTGTTGGGT 59.246 61.111 0.00 0.00 0.00 4.51
142 143 1.674322 GGACGATGGGTGTTGGGTG 60.674 63.158 0.00 0.00 0.00 4.61
143 144 1.373435 GACGATGGGTGTTGGGTGA 59.627 57.895 0.00 0.00 0.00 4.02
144 145 0.035439 GACGATGGGTGTTGGGTGAT 60.035 55.000 0.00 0.00 0.00 3.06
145 146 1.208535 GACGATGGGTGTTGGGTGATA 59.791 52.381 0.00 0.00 0.00 2.15
146 147 1.209504 ACGATGGGTGTTGGGTGATAG 59.790 52.381 0.00 0.00 0.00 2.08
147 148 1.484653 CGATGGGTGTTGGGTGATAGA 59.515 52.381 0.00 0.00 0.00 1.98
148 149 2.741878 CGATGGGTGTTGGGTGATAGAC 60.742 54.545 0.00 0.00 0.00 2.59
149 150 2.038863 TGGGTGTTGGGTGATAGACT 57.961 50.000 0.00 0.00 0.00 3.24
150 151 1.628340 TGGGTGTTGGGTGATAGACTG 59.372 52.381 0.00 0.00 0.00 3.51
151 152 1.906574 GGGTGTTGGGTGATAGACTGA 59.093 52.381 0.00 0.00 0.00 3.41
152 153 2.505819 GGGTGTTGGGTGATAGACTGAT 59.494 50.000 0.00 0.00 0.00 2.90
153 154 3.709653 GGGTGTTGGGTGATAGACTGATA 59.290 47.826 0.00 0.00 0.00 2.15
154 155 4.202264 GGGTGTTGGGTGATAGACTGATAG 60.202 50.000 0.00 0.00 0.00 2.08
155 156 4.202264 GGTGTTGGGTGATAGACTGATAGG 60.202 50.000 0.00 0.00 0.00 2.57
156 157 4.406003 GTGTTGGGTGATAGACTGATAGGT 59.594 45.833 0.00 0.00 0.00 3.08
157 158 5.030147 TGTTGGGTGATAGACTGATAGGTT 58.970 41.667 0.00 0.00 0.00 3.50
158 159 6.097839 GTGTTGGGTGATAGACTGATAGGTTA 59.902 42.308 0.00 0.00 0.00 2.85
159 160 6.670464 TGTTGGGTGATAGACTGATAGGTTAA 59.330 38.462 0.00 0.00 0.00 2.01
160 161 7.181305 TGTTGGGTGATAGACTGATAGGTTAAA 59.819 37.037 0.00 0.00 0.00 1.52
161 162 7.361457 TGGGTGATAGACTGATAGGTTAAAG 57.639 40.000 0.00 0.00 0.00 1.85
162 163 6.901300 TGGGTGATAGACTGATAGGTTAAAGT 59.099 38.462 0.00 0.00 0.00 2.66
163 164 7.069578 TGGGTGATAGACTGATAGGTTAAAGTC 59.930 40.741 0.00 0.00 39.47 3.01
164 165 7.069578 GGGTGATAGACTGATAGGTTAAAGTCA 59.930 40.741 5.72 0.00 41.22 3.41
165 166 8.138712 GGTGATAGACTGATAGGTTAAAGTCAG 58.861 40.741 5.72 6.01 41.22 3.51
166 167 7.650104 GTGATAGACTGATAGGTTAAAGTCAGC 59.350 40.741 5.72 1.95 41.28 4.26
167 168 7.342026 TGATAGACTGATAGGTTAAAGTCAGCA 59.658 37.037 5.72 0.00 41.28 4.41
168 169 6.552445 AGACTGATAGGTTAAAGTCAGCAT 57.448 37.500 5.72 0.00 41.28 3.79
169 170 6.578023 AGACTGATAGGTTAAAGTCAGCATC 58.422 40.000 5.72 0.45 41.28 3.91
170 171 6.155221 AGACTGATAGGTTAAAGTCAGCATCA 59.845 38.462 5.72 0.00 41.28 3.07
171 172 6.109359 ACTGATAGGTTAAAGTCAGCATCAC 58.891 40.000 0.00 0.00 41.28 3.06
172 173 6.048732 TGATAGGTTAAAGTCAGCATCACA 57.951 37.500 0.00 0.00 0.00 3.58
173 174 6.108687 TGATAGGTTAAAGTCAGCATCACAG 58.891 40.000 0.00 0.00 0.00 3.66
174 175 3.679389 AGGTTAAAGTCAGCATCACAGG 58.321 45.455 0.00 0.00 0.00 4.00
175 176 3.327757 AGGTTAAAGTCAGCATCACAGGA 59.672 43.478 0.00 0.00 0.00 3.86
176 177 4.018960 AGGTTAAAGTCAGCATCACAGGAT 60.019 41.667 0.00 0.00 0.00 3.24
177 178 4.333926 GGTTAAAGTCAGCATCACAGGATC 59.666 45.833 0.00 0.00 0.00 3.36
178 179 2.706339 AAGTCAGCATCACAGGATCC 57.294 50.000 2.48 2.48 0.00 3.36
179 180 1.876849 AGTCAGCATCACAGGATCCT 58.123 50.000 9.02 9.02 0.00 3.24
180 181 3.037851 AGTCAGCATCACAGGATCCTA 57.962 47.619 15.67 0.00 0.00 2.94
181 182 3.378512 AGTCAGCATCACAGGATCCTAA 58.621 45.455 15.67 3.31 0.00 2.69
182 183 3.972638 AGTCAGCATCACAGGATCCTAAT 59.027 43.478 15.67 5.79 0.00 1.73
183 184 4.411540 AGTCAGCATCACAGGATCCTAATT 59.588 41.667 15.67 0.00 0.00 1.40
184 185 4.514441 GTCAGCATCACAGGATCCTAATTG 59.486 45.833 15.67 12.12 0.00 2.32
185 186 4.409901 TCAGCATCACAGGATCCTAATTGA 59.590 41.667 15.67 17.05 0.00 2.57
186 187 5.072736 TCAGCATCACAGGATCCTAATTGAT 59.927 40.000 15.67 18.48 0.00 2.57
187 188 5.411977 CAGCATCACAGGATCCTAATTGATC 59.588 44.000 21.75 17.51 40.37 2.92
188 189 5.072736 AGCATCACAGGATCCTAATTGATCA 59.927 40.000 21.75 0.00 42.41 2.92
189 190 5.766670 GCATCACAGGATCCTAATTGATCAA 59.233 40.000 21.75 11.26 42.41 2.57
190 191 6.072618 GCATCACAGGATCCTAATTGATCAAG 60.073 42.308 21.75 15.27 42.41 3.02
191 192 6.566079 TCACAGGATCCTAATTGATCAAGT 57.434 37.500 15.67 14.05 42.41 3.16
192 193 6.351711 TCACAGGATCCTAATTGATCAAGTG 58.648 40.000 15.67 13.92 42.41 3.16
193 194 6.156775 TCACAGGATCCTAATTGATCAAGTGA 59.843 38.462 15.67 16.00 45.01 3.41
194 195 6.825213 CACAGGATCCTAATTGATCAAGTGAA 59.175 38.462 15.67 4.16 43.41 3.18
195 196 7.501559 CACAGGATCCTAATTGATCAAGTGAAT 59.498 37.037 15.67 8.59 43.41 2.57
196 197 8.717717 ACAGGATCCTAATTGATCAAGTGAATA 58.282 33.333 15.67 2.09 42.41 1.75
197 198 9.565090 CAGGATCCTAATTGATCAAGTGAATAA 57.435 33.333 15.67 0.00 42.41 1.40
208 209 9.681692 TTGATCAAGTGAATAAACATGAAACAG 57.318 29.630 3.38 0.00 32.11 3.16
209 210 9.065798 TGATCAAGTGAATAAACATGAAACAGA 57.934 29.630 0.00 0.00 32.11 3.41
210 211 9.897744 GATCAAGTGAATAAACATGAAACAGAA 57.102 29.630 0.00 0.00 32.11 3.02
211 212 9.683069 ATCAAGTGAATAAACATGAAACAGAAC 57.317 29.630 0.00 0.00 32.11 3.01
212 213 8.902806 TCAAGTGAATAAACATGAAACAGAACT 58.097 29.630 0.00 0.00 0.00 3.01
215 216 9.778741 AGTGAATAAACATGAAACAGAACTAGA 57.221 29.630 0.00 0.00 0.00 2.43
222 223 7.993821 ACATGAAACAGAACTAGATACATCG 57.006 36.000 0.00 0.00 0.00 3.84
223 224 7.772166 ACATGAAACAGAACTAGATACATCGA 58.228 34.615 0.00 0.00 0.00 3.59
224 225 8.251026 ACATGAAACAGAACTAGATACATCGAA 58.749 33.333 0.00 0.00 0.00 3.71
225 226 9.087424 CATGAAACAGAACTAGATACATCGAAA 57.913 33.333 0.00 0.00 0.00 3.46
226 227 9.823647 ATGAAACAGAACTAGATACATCGAAAT 57.176 29.630 0.00 0.00 0.00 2.17
246 247 9.321562 TCGAAATAAAGAATACAACATACTCCC 57.678 33.333 0.00 0.00 0.00 4.30
247 248 9.326413 CGAAATAAAGAATACAACATACTCCCT 57.674 33.333 0.00 0.00 0.00 4.20
249 250 9.628500 AAATAAAGAATACAACATACTCCCTCC 57.372 33.333 0.00 0.00 0.00 4.30
250 251 4.939052 AGAATACAACATACTCCCTCCG 57.061 45.455 0.00 0.00 0.00 4.63
251 252 4.287552 AGAATACAACATACTCCCTCCGT 58.712 43.478 0.00 0.00 0.00 4.69
252 253 4.341520 AGAATACAACATACTCCCTCCGTC 59.658 45.833 0.00 0.00 0.00 4.79
253 254 2.233305 ACAACATACTCCCTCCGTCT 57.767 50.000 0.00 0.00 0.00 4.18
254 255 2.100989 ACAACATACTCCCTCCGTCTC 58.899 52.381 0.00 0.00 0.00 3.36
255 256 2.100197 CAACATACTCCCTCCGTCTCA 58.900 52.381 0.00 0.00 0.00 3.27
256 257 2.496070 CAACATACTCCCTCCGTCTCAA 59.504 50.000 0.00 0.00 0.00 3.02
257 258 2.816411 ACATACTCCCTCCGTCTCAAA 58.184 47.619 0.00 0.00 0.00 2.69
258 259 3.170717 ACATACTCCCTCCGTCTCAAAA 58.829 45.455 0.00 0.00 0.00 2.44
259 260 3.775316 ACATACTCCCTCCGTCTCAAAAT 59.225 43.478 0.00 0.00 0.00 1.82
260 261 4.960469 ACATACTCCCTCCGTCTCAAAATA 59.040 41.667 0.00 0.00 0.00 1.40
261 262 5.602978 ACATACTCCCTCCGTCTCAAAATAT 59.397 40.000 0.00 0.00 0.00 1.28
262 263 6.781014 ACATACTCCCTCCGTCTCAAAATATA 59.219 38.462 0.00 0.00 0.00 0.86
263 264 7.289317 ACATACTCCCTCCGTCTCAAAATATAA 59.711 37.037 0.00 0.00 0.00 0.98
264 265 6.163135 ACTCCCTCCGTCTCAAAATATAAG 57.837 41.667 0.00 0.00 0.00 1.73
265 266 5.897824 ACTCCCTCCGTCTCAAAATATAAGA 59.102 40.000 0.00 0.00 0.00 2.10
266 267 6.383147 ACTCCCTCCGTCTCAAAATATAAGAA 59.617 38.462 0.00 0.00 0.00 2.52
267 268 6.579865 TCCCTCCGTCTCAAAATATAAGAAC 58.420 40.000 0.00 0.00 0.00 3.01
268 269 6.383147 TCCCTCCGTCTCAAAATATAAGAACT 59.617 38.462 0.00 0.00 0.00 3.01
269 270 7.048512 CCCTCCGTCTCAAAATATAAGAACTT 58.951 38.462 0.00 0.00 0.00 2.66
270 271 7.553044 CCCTCCGTCTCAAAATATAAGAACTTT 59.447 37.037 0.00 0.00 0.00 2.66
271 272 8.947115 CCTCCGTCTCAAAATATAAGAACTTTT 58.053 33.333 0.00 0.00 0.00 2.27
319 320 2.933906 GGACGCGAATTTTCAGGACATA 59.066 45.455 15.93 0.00 0.00 2.29
393 395 1.571773 AAATTAGCGCCACTCCCCCT 61.572 55.000 2.29 0.00 0.00 4.79
405 408 2.044451 CCCCCTGCGCAAATACCA 60.044 61.111 13.05 0.00 0.00 3.25
482 486 3.582208 AGGGCCACAAGCATTTATTTTCA 59.418 39.130 6.18 0.00 46.50 2.69
495 499 7.913297 AGCATTTATTTTCATACAAATACGCGT 59.087 29.630 19.17 19.17 29.97 6.01
724 749 9.023962 TCCATATGAATTGACTTTGTTTTAGCT 57.976 29.630 3.65 0.00 0.00 3.32
889 925 0.825840 GGAGAGGCTGAGCGTCCTAT 60.826 60.000 21.95 5.33 43.36 2.57
981 1017 2.093106 ACAGACACCACGGATCTAGAC 58.907 52.381 0.00 0.00 0.00 2.59
1404 1441 2.591429 TGTGTTGCTGCTCGGTGG 60.591 61.111 0.00 0.00 0.00 4.61
1995 2058 6.032956 TCGACACCACATACAAGACTAATT 57.967 37.500 0.00 0.00 0.00 1.40
2184 2247 8.288208 CAGGTAAATAACAATGCATCTGATCTC 58.712 37.037 0.00 0.00 0.00 2.75
2190 2253 3.003378 ACAATGCATCTGATCTCGCAATG 59.997 43.478 12.37 12.37 40.33 2.82
2191 2254 1.589803 TGCATCTGATCTCGCAATGG 58.410 50.000 0.00 0.00 0.00 3.16
2192 2255 1.139455 TGCATCTGATCTCGCAATGGA 59.861 47.619 0.00 0.00 0.00 3.41
2193 2256 2.224450 TGCATCTGATCTCGCAATGGAT 60.224 45.455 0.00 0.00 0.00 3.41
2194 2257 2.415857 GCATCTGATCTCGCAATGGATC 59.584 50.000 0.00 0.00 38.87 3.36
2195 2258 3.865302 GCATCTGATCTCGCAATGGATCT 60.865 47.826 0.00 0.00 39.09 2.75
2196 2259 3.382048 TCTGATCTCGCAATGGATCTG 57.618 47.619 0.00 0.00 39.09 2.90
2197 2260 2.697229 TCTGATCTCGCAATGGATCTGT 59.303 45.455 0.00 0.00 39.09 3.41
2198 2261 3.133542 TCTGATCTCGCAATGGATCTGTT 59.866 43.478 0.00 0.00 39.09 3.16
2199 2262 3.875727 CTGATCTCGCAATGGATCTGTTT 59.124 43.478 0.00 0.00 39.09 2.83
2200 2263 3.873361 TGATCTCGCAATGGATCTGTTTC 59.127 43.478 0.00 0.00 39.09 2.78
2201 2264 2.632377 TCTCGCAATGGATCTGTTTCC 58.368 47.619 0.00 0.00 36.24 3.13
2202 2265 2.237143 TCTCGCAATGGATCTGTTTCCT 59.763 45.455 0.00 0.00 36.68 3.36
2203 2266 2.353889 CTCGCAATGGATCTGTTTCCTG 59.646 50.000 0.00 0.00 36.68 3.86
2204 2267 2.027285 TCGCAATGGATCTGTTTCCTGA 60.027 45.455 0.00 0.00 36.68 3.86
2205 2268 2.947652 CGCAATGGATCTGTTTCCTGAT 59.052 45.455 0.00 0.00 36.68 2.90
2206 2269 3.379372 CGCAATGGATCTGTTTCCTGATT 59.621 43.478 0.00 0.00 36.68 2.57
2207 2270 4.142315 CGCAATGGATCTGTTTCCTGATTT 60.142 41.667 0.00 0.00 36.68 2.17
2208 2271 5.107133 GCAATGGATCTGTTTCCTGATTTG 58.893 41.667 0.00 0.00 36.68 2.32
2209 2272 5.105635 GCAATGGATCTGTTTCCTGATTTGA 60.106 40.000 0.00 0.00 36.68 2.69
2210 2273 6.561614 CAATGGATCTGTTTCCTGATTTGAG 58.438 40.000 0.00 0.00 36.68 3.02
2211 2274 5.503634 TGGATCTGTTTCCTGATTTGAGA 57.496 39.130 0.00 0.00 36.68 3.27
2212 2275 5.248640 TGGATCTGTTTCCTGATTTGAGAC 58.751 41.667 0.00 0.00 36.68 3.36
2213 2276 5.221904 TGGATCTGTTTCCTGATTTGAGACA 60.222 40.000 0.00 0.00 36.68 3.41
2214 2277 5.884792 GGATCTGTTTCCTGATTTGAGACAT 59.115 40.000 0.00 0.00 32.68 3.06
2215 2278 6.183360 GGATCTGTTTCCTGATTTGAGACATG 60.183 42.308 0.00 0.00 32.68 3.21
2216 2279 5.624159 TCTGTTTCCTGATTTGAGACATGT 58.376 37.500 0.00 0.00 0.00 3.21
2217 2280 6.064060 TCTGTTTCCTGATTTGAGACATGTT 58.936 36.000 0.00 0.00 0.00 2.71
2218 2281 6.547141 TCTGTTTCCTGATTTGAGACATGTTT 59.453 34.615 0.00 0.00 0.00 2.83
2219 2282 7.719193 TCTGTTTCCTGATTTGAGACATGTTTA 59.281 33.333 0.00 0.00 0.00 2.01
2220 2283 8.231692 TGTTTCCTGATTTGAGACATGTTTAA 57.768 30.769 0.00 0.00 0.00 1.52
2221 2284 8.859090 TGTTTCCTGATTTGAGACATGTTTAAT 58.141 29.630 0.00 0.00 0.00 1.40
2222 2285 9.696917 GTTTCCTGATTTGAGACATGTTTAATT 57.303 29.630 0.00 0.00 0.00 1.40
2223 2286 9.695526 TTTCCTGATTTGAGACATGTTTAATTG 57.304 29.630 0.00 0.00 0.00 2.32
2224 2287 7.829725 TCCTGATTTGAGACATGTTTAATTGG 58.170 34.615 0.00 5.23 0.00 3.16
2225 2288 7.037438 CCTGATTTGAGACATGTTTAATTGGG 58.963 38.462 0.00 1.70 0.00 4.12
2226 2289 7.309990 CCTGATTTGAGACATGTTTAATTGGGT 60.310 37.037 0.00 0.00 0.00 4.51
2227 2290 7.377398 TGATTTGAGACATGTTTAATTGGGTG 58.623 34.615 0.00 0.00 0.00 4.61
2228 2291 4.782019 TGAGACATGTTTAATTGGGTGC 57.218 40.909 0.00 0.00 0.00 5.01
2229 2292 3.509575 TGAGACATGTTTAATTGGGTGCC 59.490 43.478 0.00 0.00 0.00 5.01
2230 2293 2.831526 AGACATGTTTAATTGGGTGCCC 59.168 45.455 0.00 0.00 0.00 5.36
2231 2294 1.905894 ACATGTTTAATTGGGTGCCCC 59.094 47.619 4.59 3.42 45.71 5.80
2240 2303 4.657952 GGGTGCCCCACTCAATAC 57.342 61.111 5.45 0.00 44.65 1.89
2241 2304 1.451387 GGGTGCCCCACTCAATACG 60.451 63.158 5.45 0.00 44.65 3.06
2242 2305 2.112815 GGTGCCCCACTCAATACGC 61.113 63.158 0.00 0.00 34.40 4.42
2243 2306 2.112815 GTGCCCCACTCAATACGCC 61.113 63.158 0.00 0.00 0.00 5.68
2244 2307 2.270850 GCCCCACTCAATACGCCA 59.729 61.111 0.00 0.00 0.00 5.69
2245 2308 1.152963 GCCCCACTCAATACGCCAT 60.153 57.895 0.00 0.00 0.00 4.40
2246 2309 1.166531 GCCCCACTCAATACGCCATC 61.167 60.000 0.00 0.00 0.00 3.51
2247 2310 0.535102 CCCCACTCAATACGCCATCC 60.535 60.000 0.00 0.00 0.00 3.51
2248 2311 0.180171 CCCACTCAATACGCCATCCA 59.820 55.000 0.00 0.00 0.00 3.41
2249 2312 1.586422 CCACTCAATACGCCATCCAG 58.414 55.000 0.00 0.00 0.00 3.86
2250 2313 1.138859 CCACTCAATACGCCATCCAGA 59.861 52.381 0.00 0.00 0.00 3.86
2251 2314 2.224378 CCACTCAATACGCCATCCAGAT 60.224 50.000 0.00 0.00 0.00 2.90
2252 2315 3.006859 CCACTCAATACGCCATCCAGATA 59.993 47.826 0.00 0.00 0.00 1.98
2253 2316 4.503123 CCACTCAATACGCCATCCAGATAA 60.503 45.833 0.00 0.00 0.00 1.75
2254 2317 5.240891 CACTCAATACGCCATCCAGATAAT 58.759 41.667 0.00 0.00 0.00 1.28
2255 2318 5.702670 CACTCAATACGCCATCCAGATAATT 59.297 40.000 0.00 0.00 0.00 1.40
2256 2319 6.205464 CACTCAATACGCCATCCAGATAATTT 59.795 38.462 0.00 0.00 0.00 1.82
2257 2320 6.205464 ACTCAATACGCCATCCAGATAATTTG 59.795 38.462 0.00 0.00 0.00 2.32
2258 2321 5.473162 TCAATACGCCATCCAGATAATTTGG 59.527 40.000 0.00 0.00 37.04 3.28
2259 2322 3.297134 ACGCCATCCAGATAATTTGGT 57.703 42.857 0.00 0.00 37.02 3.67
2260 2323 3.631250 ACGCCATCCAGATAATTTGGTT 58.369 40.909 0.00 0.00 37.02 3.67
2261 2324 4.787551 ACGCCATCCAGATAATTTGGTTA 58.212 39.130 0.00 0.00 37.02 2.85
2262 2325 4.578928 ACGCCATCCAGATAATTTGGTTAC 59.421 41.667 0.00 0.00 37.02 2.50
2263 2326 4.319477 CGCCATCCAGATAATTTGGTTACG 60.319 45.833 0.00 0.00 37.02 3.18
2264 2327 4.556699 GCCATCCAGATAATTTGGTTACGC 60.557 45.833 0.00 0.00 37.02 4.42
2265 2328 4.578516 CCATCCAGATAATTTGGTTACGCA 59.421 41.667 0.00 0.00 37.02 5.24
2266 2329 5.505654 CCATCCAGATAATTTGGTTACGCAC 60.506 44.000 0.00 0.00 37.02 5.34
2268 2331 3.066203 CCAGATAATTTGGTTACGCACCC 59.934 47.826 1.99 0.00 46.68 4.61
2269 2332 3.692101 CAGATAATTTGGTTACGCACCCA 59.308 43.478 1.99 0.00 46.68 4.51
2270 2333 3.692593 AGATAATTTGGTTACGCACCCAC 59.307 43.478 1.99 0.00 46.68 4.61
2271 2334 1.989706 AATTTGGTTACGCACCCACT 58.010 45.000 1.99 0.00 46.68 4.00
2272 2335 1.530323 ATTTGGTTACGCACCCACTC 58.470 50.000 1.99 0.00 46.68 3.51
2273 2336 0.881159 TTTGGTTACGCACCCACTCG 60.881 55.000 1.99 0.00 46.68 4.18
2274 2337 3.116531 GGTTACGCACCCACTCGC 61.117 66.667 0.00 0.00 40.19 5.03
2294 2357 2.190313 CCTGCATGGGCTCGCTAA 59.810 61.111 0.00 0.00 41.91 3.09
2295 2358 1.451927 CCTGCATGGGCTCGCTAAA 60.452 57.895 0.00 0.00 41.91 1.85
2296 2359 1.031571 CCTGCATGGGCTCGCTAAAA 61.032 55.000 0.00 0.00 41.91 1.52
2297 2360 0.099436 CTGCATGGGCTCGCTAAAAC 59.901 55.000 0.00 0.00 41.91 2.43
2298 2361 1.062525 GCATGGGCTCGCTAAAACG 59.937 57.895 0.00 0.00 36.96 3.60
2299 2362 1.644786 GCATGGGCTCGCTAAAACGT 61.645 55.000 0.00 0.00 36.96 3.99
2300 2363 0.802494 CATGGGCTCGCTAAAACGTT 59.198 50.000 0.00 0.00 0.00 3.99
2301 2364 0.802494 ATGGGCTCGCTAAAACGTTG 59.198 50.000 0.00 0.00 0.00 4.10
2302 2365 0.533308 TGGGCTCGCTAAAACGTTGT 60.533 50.000 0.00 0.00 0.00 3.32
2303 2366 1.270199 TGGGCTCGCTAAAACGTTGTA 60.270 47.619 0.00 0.00 0.00 2.41
2304 2367 1.799994 GGGCTCGCTAAAACGTTGTAA 59.200 47.619 0.00 0.00 0.00 2.41
2305 2368 2.411935 GGGCTCGCTAAAACGTTGTAAC 60.412 50.000 0.00 0.00 0.00 2.50
2306 2369 2.411935 GGCTCGCTAAAACGTTGTAACC 60.412 50.000 0.00 0.00 0.00 2.85
2307 2370 2.477754 GCTCGCTAAAACGTTGTAACCT 59.522 45.455 0.00 0.00 0.00 3.50
2308 2371 3.674753 GCTCGCTAAAACGTTGTAACCTA 59.325 43.478 0.00 0.00 0.00 3.08
2315 2378 6.903479 GCTAAAACGTTGTAACCTATACATGC 59.097 38.462 0.00 0.00 0.00 4.06
2317 2380 5.789710 AACGTTGTAACCTATACATGCAC 57.210 39.130 0.00 0.00 0.00 4.57
2320 2383 6.575267 ACGTTGTAACCTATACATGCACATA 58.425 36.000 0.00 0.00 0.00 2.29
2321 2384 6.477688 ACGTTGTAACCTATACATGCACATAC 59.522 38.462 0.00 0.00 0.00 2.39
2343 2406 4.587262 ACGCATGGGATACTAGAACATACA 59.413 41.667 17.76 0.00 0.00 2.29
2357 2421 5.519722 AGAACATACAAAAAGAAACGGCAG 58.480 37.500 0.00 0.00 0.00 4.85
2358 2422 4.911514 ACATACAAAAAGAAACGGCAGT 57.088 36.364 0.00 0.00 0.00 4.40
2359 2423 6.261381 AGAACATACAAAAAGAAACGGCAGTA 59.739 34.615 0.00 0.00 0.00 2.74
2364 2428 4.274214 ACAAAAAGAAACGGCAGTACCTAC 59.726 41.667 0.00 0.00 35.61 3.18
2366 2430 0.108945 AGAAACGGCAGTACCTACGC 60.109 55.000 0.00 0.00 35.61 4.42
2367 2431 1.408474 GAAACGGCAGTACCTACGCG 61.408 60.000 3.53 3.53 35.61 6.01
2368 2432 2.146073 AAACGGCAGTACCTACGCGT 62.146 55.000 19.17 19.17 35.61 6.01
2370 2434 1.305219 ACGGCAGTACCTACGCGTAA 61.305 55.000 20.97 2.25 35.61 3.18
2371 2435 0.863119 CGGCAGTACCTACGCGTAAC 60.863 60.000 20.97 15.43 35.61 2.50
2388 2452 5.004630 CGCGTAACGGATACACTAAATTTGA 59.995 40.000 0.00 0.00 38.44 2.69
2396 2460 9.745880 ACGGATACACTAAATTTGATACTACAG 57.254 33.333 0.00 0.00 0.00 2.74
2403 2467 4.864916 AATTTGATACTACAGCAGTGCG 57.135 40.909 10.00 7.44 38.24 5.34
2419 2483 4.838152 CGCTAGCCGTGCCCATGT 62.838 66.667 9.66 0.00 0.00 3.21
2446 2524 1.271054 GCAGGGCGGATGATACTTCAT 60.271 52.381 0.00 0.00 45.39 2.57
2457 2535 6.931281 CGGATGATACTTCATAACTTGTGGAT 59.069 38.462 0.00 0.00 42.73 3.41
2459 2537 7.173907 GGATGATACTTCATAACTTGTGGATGG 59.826 40.741 0.00 0.00 42.73 3.51
2506 2584 2.253603 GCGAGGCACAACATGAAAATC 58.746 47.619 0.00 0.00 0.00 2.17
2521 2599 7.893658 ACATGAAAATCTTCTTCAAGAATGCT 58.106 30.769 0.00 0.00 42.14 3.79
2557 2635 3.630148 GCGACATGGCGATGGACG 61.630 66.667 28.68 19.60 45.66 4.79
2593 2671 3.157217 ATGTCCCCATCGCTCGCTC 62.157 63.158 0.00 0.00 0.00 5.03
2626 2704 2.938956 ACTTGTTCTCCCACTTCCAG 57.061 50.000 0.00 0.00 0.00 3.86
2635 2713 0.178992 CCCACTTCCAGAACCTGCAA 60.179 55.000 0.00 0.00 0.00 4.08
2649 2727 4.030452 GCAACCTCCGTGCTGCAC 62.030 66.667 22.38 22.38 39.00 4.57
2672 2750 5.163622 ACCATGAACAAAGATTAGAATGCCG 60.164 40.000 0.00 0.00 0.00 5.69
2681 2759 0.179084 TTAGAATGCCGCGGAGAAGG 60.179 55.000 33.48 0.01 0.00 3.46
2692 3344 1.066143 GCGGAGAAGGTGGAATGAGAA 60.066 52.381 0.00 0.00 0.00 2.87
2700 3442 1.134670 GGTGGAATGAGAAGGTCTCGG 60.135 57.143 1.07 0.00 46.25 4.63
2711 3453 3.902467 AGAAGGTCTCGGAAAACTTACCT 59.098 43.478 0.00 0.00 38.98 3.08
2715 3457 4.286291 AGGTCTCGGAAAACTTACCTCATT 59.714 41.667 0.00 0.00 31.78 2.57
2722 3464 4.758165 GGAAAACTTACCTCATTCCGTTCA 59.242 41.667 0.00 0.00 31.14 3.18
2749 3491 0.178873 AGAAGTGCCTCCCTGGGTTA 60.179 55.000 13.56 0.00 36.00 2.85
2758 3500 3.178865 CCTCCCTGGGTTAAGTTCTGTA 58.821 50.000 13.56 0.00 0.00 2.74
2775 3517 1.342174 TGTACCGGAGACAAACCAGAC 59.658 52.381 9.46 0.00 0.00 3.51
2848 3590 1.071605 GATTGCTCGTGTGGTGAGAC 58.928 55.000 0.00 0.00 35.43 3.36
2850 3592 2.011741 TTGCTCGTGTGGTGAGACGT 62.012 55.000 0.00 0.00 39.76 4.34
2894 3636 1.154413 GCGGACGAACACATGCTTG 60.154 57.895 0.00 0.00 0.00 4.01
2896 3638 1.875963 GGACGAACACATGCTTGGG 59.124 57.895 0.00 0.00 0.00 4.12
2910 3652 2.051804 CTTGGGAAGCGCGGCTAATG 62.052 60.000 8.83 0.00 38.25 1.90
2917 3659 2.875786 GCGCGGCTAATGTGAGAGC 61.876 63.158 8.83 0.00 38.00 4.09
2962 3704 1.821332 GGCCATCCGAAGCAAGGAG 60.821 63.158 0.00 0.00 41.66 3.69
2970 3712 1.679977 GAAGCAAGGAGGCATGGCA 60.680 57.895 22.64 0.00 35.83 4.92
3020 3762 2.342179 GGTAGCTGTTGAGACTGAAGC 58.658 52.381 0.00 0.00 0.00 3.86
3024 3766 1.467734 GCTGTTGAGACTGAAGCATGG 59.532 52.381 0.00 0.00 34.01 3.66
3032 3774 1.181098 ACTGAAGCATGGCCAACACC 61.181 55.000 10.96 1.64 0.00 4.16
3034 3777 1.290009 GAAGCATGGCCAACACCAC 59.710 57.895 10.96 0.00 44.17 4.16
3037 3780 1.304052 GCATGGCCAACACCACCTA 60.304 57.895 10.96 0.00 44.17 3.08
3038 3781 0.897863 GCATGGCCAACACCACCTAA 60.898 55.000 10.96 0.00 44.17 2.69
3039 3782 1.176527 CATGGCCAACACCACCTAAG 58.823 55.000 10.96 0.00 44.17 2.18
3058 3803 2.192979 CCCGCCTGGTGCATGTAT 59.807 61.111 0.55 0.00 41.33 2.29
3087 3832 3.187700 GGCTACAGGTCAGTAAATGTCG 58.812 50.000 0.00 0.00 0.00 4.35
3116 3861 2.253452 GCTGACGCTTGTTGCAGG 59.747 61.111 0.00 0.00 43.06 4.85
3119 3864 0.512952 CTGACGCTTGTTGCAGGTAC 59.487 55.000 0.00 0.00 43.06 3.34
3125 3870 1.878948 GCTTGTTGCAGGTACCCGTTA 60.879 52.381 8.74 0.00 42.31 3.18
3129 3874 2.038689 TGTTGCAGGTACCCGTTATCAA 59.961 45.455 8.74 1.39 0.00 2.57
3175 3921 2.893637 TGAAGGCAGAGAAGAATACGC 58.106 47.619 0.00 0.00 0.00 4.42
3179 3925 1.812214 GCAGAGAAGAATACGCGCGG 61.812 60.000 35.22 16.31 0.00 6.46
3204 3950 1.019278 AAGATGTTGTACGCTGCCCG 61.019 55.000 0.00 0.00 44.21 6.13
3221 3967 1.558383 CGGCTGAGTTTATACGCGC 59.442 57.895 5.73 0.00 0.00 6.86
3276 4022 1.079405 CCAGTGGTGCGGATAACGT 60.079 57.895 0.00 0.00 46.52 3.99
3305 4051 0.457853 GCCGCATGTACAGAGACGAA 60.458 55.000 0.33 0.00 0.00 3.85
3314 4060 5.550232 TGTACAGAGACGAATTAGCGTTA 57.450 39.130 0.00 0.00 45.72 3.18
3315 4061 5.941733 TGTACAGAGACGAATTAGCGTTAA 58.058 37.500 0.00 0.00 45.72 2.01
3319 4065 6.587651 ACAGAGACGAATTAGCGTTAAAAAC 58.412 36.000 0.00 0.00 45.72 2.43
3340 4086 7.989416 AAACGTTCTTATATTTTGGGACAGA 57.011 32.000 0.00 0.00 42.39 3.41
3341 4087 7.611213 AACGTTCTTATATTTTGGGACAGAG 57.389 36.000 0.00 0.00 42.39 3.35
3342 4088 6.113411 ACGTTCTTATATTTTGGGACAGAGG 58.887 40.000 0.00 0.00 42.39 3.69
3343 4089 5.527582 CGTTCTTATATTTTGGGACAGAGGG 59.472 44.000 0.00 0.00 42.39 4.30
3344 4090 6.631766 CGTTCTTATATTTTGGGACAGAGGGA 60.632 42.308 0.00 0.00 42.39 4.20
3345 4091 6.500589 TCTTATATTTTGGGACAGAGGGAG 57.499 41.667 0.00 0.00 42.39 4.30
3346 4092 5.970640 TCTTATATTTTGGGACAGAGGGAGT 59.029 40.000 0.00 0.00 42.39 3.85
3347 4093 7.136885 TCTTATATTTTGGGACAGAGGGAGTA 58.863 38.462 0.00 0.00 42.39 2.59
3348 4094 5.896073 ATATTTTGGGACAGAGGGAGTAG 57.104 43.478 0.00 0.00 42.39 2.57
3349 4095 3.269592 TTTTGGGACAGAGGGAGTAGA 57.730 47.619 0.00 0.00 42.39 2.59
3350 4096 3.491766 TTTGGGACAGAGGGAGTAGAT 57.508 47.619 0.00 0.00 42.39 1.98
3351 4097 2.461300 TGGGACAGAGGGAGTAGATG 57.539 55.000 0.00 0.00 0.00 2.90
3352 4098 1.930204 TGGGACAGAGGGAGTAGATGA 59.070 52.381 0.00 0.00 0.00 2.92
3353 4099 2.091610 TGGGACAGAGGGAGTAGATGAG 60.092 54.545 0.00 0.00 0.00 2.90
3354 4100 2.091555 GGGACAGAGGGAGTAGATGAGT 60.092 54.545 0.00 0.00 0.00 3.41
3355 4101 3.138653 GGGACAGAGGGAGTAGATGAGTA 59.861 52.174 0.00 0.00 0.00 2.59
3356 4102 4.386536 GGGACAGAGGGAGTAGATGAGTAA 60.387 50.000 0.00 0.00 0.00 2.24
3357 4103 5.202004 GGACAGAGGGAGTAGATGAGTAAA 58.798 45.833 0.00 0.00 0.00 2.01
3358 4104 5.836358 GGACAGAGGGAGTAGATGAGTAAAT 59.164 44.000 0.00 0.00 0.00 1.40
3359 4105 6.015772 GGACAGAGGGAGTAGATGAGTAAATC 60.016 46.154 0.00 0.00 0.00 2.17
3360 4106 6.436027 ACAGAGGGAGTAGATGAGTAAATCA 58.564 40.000 0.00 0.00 43.70 2.57
3361 4107 6.322712 ACAGAGGGAGTAGATGAGTAAATCAC 59.677 42.308 0.00 0.00 41.91 3.06
3362 4108 5.836358 AGAGGGAGTAGATGAGTAAATCACC 59.164 44.000 0.00 0.00 41.91 4.02
3363 4109 4.585162 AGGGAGTAGATGAGTAAATCACCG 59.415 45.833 0.00 0.00 41.91 4.94
3364 4110 4.299978 GGAGTAGATGAGTAAATCACCGC 58.700 47.826 0.00 0.00 41.91 5.68
3365 4111 4.038162 GGAGTAGATGAGTAAATCACCGCT 59.962 45.833 0.00 0.00 41.91 5.52
3366 4112 5.189659 AGTAGATGAGTAAATCACCGCTC 57.810 43.478 0.00 0.00 41.91 5.03
3367 4113 3.085443 AGATGAGTAAATCACCGCTCG 57.915 47.619 0.00 0.00 41.91 5.03
3368 4114 2.688446 AGATGAGTAAATCACCGCTCGA 59.312 45.455 0.00 0.00 41.91 4.04
3369 4115 3.130516 AGATGAGTAAATCACCGCTCGAA 59.869 43.478 0.00 0.00 41.91 3.71
3370 4116 2.602878 TGAGTAAATCACCGCTCGAAC 58.397 47.619 0.00 0.00 31.12 3.95
3371 4117 1.582502 GAGTAAATCACCGCTCGAACG 59.417 52.381 0.15 0.15 0.00 3.95
3372 4118 0.024619 GTAAATCACCGCTCGAACGC 59.975 55.000 1.91 0.00 0.00 4.84
3373 4119 0.388778 TAAATCACCGCTCGAACGCA 60.389 50.000 1.91 0.00 0.00 5.24
3374 4120 1.225376 AAATCACCGCTCGAACGCAA 61.225 50.000 1.91 0.00 0.00 4.85
3375 4121 1.019278 AATCACCGCTCGAACGCAAT 61.019 50.000 1.91 0.00 0.00 3.56
3376 4122 1.019278 ATCACCGCTCGAACGCAATT 61.019 50.000 1.91 0.00 0.00 2.32
3377 4123 0.388778 TCACCGCTCGAACGCAATTA 60.389 50.000 1.91 0.00 0.00 1.40
3378 4124 0.650512 CACCGCTCGAACGCAATTAT 59.349 50.000 1.91 0.00 0.00 1.28
3379 4125 0.650512 ACCGCTCGAACGCAATTATG 59.349 50.000 1.91 0.00 0.00 1.90
3395 4141 6.441093 CAATTATGCAAAGCTTACCAGAGA 57.559 37.500 0.00 0.00 0.00 3.10
3396 4142 7.035840 CAATTATGCAAAGCTTACCAGAGAT 57.964 36.000 0.00 0.00 0.00 2.75
3397 4143 6.630444 ATTATGCAAAGCTTACCAGAGATG 57.370 37.500 0.00 0.00 0.00 2.90
3398 4144 3.701205 TGCAAAGCTTACCAGAGATGA 57.299 42.857 0.00 0.00 0.00 2.92
3399 4145 4.226427 TGCAAAGCTTACCAGAGATGAT 57.774 40.909 0.00 0.00 0.00 2.45
3400 4146 5.357742 TGCAAAGCTTACCAGAGATGATA 57.642 39.130 0.00 0.00 0.00 2.15
3401 4147 5.363101 TGCAAAGCTTACCAGAGATGATAG 58.637 41.667 0.00 0.00 0.00 2.08
3402 4148 5.104776 TGCAAAGCTTACCAGAGATGATAGT 60.105 40.000 0.00 0.00 0.00 2.12
3403 4149 5.236047 GCAAAGCTTACCAGAGATGATAGTG 59.764 44.000 0.00 0.00 0.00 2.74
3404 4150 6.577103 CAAAGCTTACCAGAGATGATAGTGA 58.423 40.000 0.00 0.00 0.00 3.41
3405 4151 6.798427 AAGCTTACCAGAGATGATAGTGAA 57.202 37.500 0.00 0.00 0.00 3.18
3406 4152 6.155475 AGCTTACCAGAGATGATAGTGAAC 57.845 41.667 0.00 0.00 0.00 3.18
3407 4153 5.658634 AGCTTACCAGAGATGATAGTGAACA 59.341 40.000 0.00 0.00 0.00 3.18
3408 4154 6.155221 AGCTTACCAGAGATGATAGTGAACAA 59.845 38.462 0.00 0.00 0.00 2.83
3409 4155 6.989169 GCTTACCAGAGATGATAGTGAACAAT 59.011 38.462 0.00 0.00 0.00 2.71
3410 4156 8.144478 GCTTACCAGAGATGATAGTGAACAATA 58.856 37.037 0.00 0.00 0.00 1.90
3414 4160 9.911788 ACCAGAGATGATAGTGAACAATATTTT 57.088 29.630 0.00 0.00 0.00 1.82
3432 4178 3.306917 TTTTTGAGTGATGCTGCATGG 57.693 42.857 21.53 0.00 0.00 3.66
3433 4179 2.203470 TTTGAGTGATGCTGCATGGA 57.797 45.000 21.53 3.14 0.00 3.41
3434 4180 1.456296 TTGAGTGATGCTGCATGGAC 58.544 50.000 21.53 15.59 0.00 4.02
3435 4181 0.741927 TGAGTGATGCTGCATGGACG 60.742 55.000 21.53 0.00 0.00 4.79
3436 4182 0.460811 GAGTGATGCTGCATGGACGA 60.461 55.000 21.53 0.00 0.00 4.20
3437 4183 0.742281 AGTGATGCTGCATGGACGAC 60.742 55.000 21.53 4.79 0.00 4.34
3438 4184 1.020861 GTGATGCTGCATGGACGACA 61.021 55.000 21.53 7.62 0.00 4.35
3439 4185 0.321475 TGATGCTGCATGGACGACAA 60.321 50.000 21.53 0.00 0.00 3.18
3440 4186 0.804364 GATGCTGCATGGACGACAAA 59.196 50.000 21.53 0.00 0.00 2.83
3441 4187 1.199789 GATGCTGCATGGACGACAAAA 59.800 47.619 21.53 0.00 0.00 2.44
3442 4188 1.028130 TGCTGCATGGACGACAAAAA 58.972 45.000 0.00 0.00 0.00 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.392754 CGACACACATGAATTTCTGATGGA 59.607 41.667 0.00 0.00 0.00 3.41
1 2 4.437794 CCGACACACATGAATTTCTGATGG 60.438 45.833 0.00 0.00 0.00 3.51
2 3 4.655027 CCGACACACATGAATTTCTGATG 58.345 43.478 0.00 0.00 0.00 3.07
5 6 2.414559 GGCCGACACACATGAATTTCTG 60.415 50.000 0.00 0.00 0.00 3.02
6 7 1.812571 GGCCGACACACATGAATTTCT 59.187 47.619 0.00 0.00 0.00 2.52
7 8 1.812571 AGGCCGACACACATGAATTTC 59.187 47.619 0.00 0.00 0.00 2.17
8 9 1.812571 GAGGCCGACACACATGAATTT 59.187 47.619 0.00 0.00 0.00 1.82
9 10 1.003580 AGAGGCCGACACACATGAATT 59.996 47.619 0.00 0.00 0.00 2.17
10 11 0.615331 AGAGGCCGACACACATGAAT 59.385 50.000 0.00 0.00 0.00 2.57
11 12 0.396435 AAGAGGCCGACACACATGAA 59.604 50.000 0.00 0.00 0.00 2.57
12 13 0.320683 CAAGAGGCCGACACACATGA 60.321 55.000 0.00 0.00 0.00 3.07
13 14 1.915614 GCAAGAGGCCGACACACATG 61.916 60.000 0.00 0.00 36.11 3.21
14 15 1.672356 GCAAGAGGCCGACACACAT 60.672 57.895 0.00 0.00 36.11 3.21
15 16 2.280797 GCAAGAGGCCGACACACA 60.281 61.111 0.00 0.00 36.11 3.72
16 17 3.414700 CGCAAGAGGCCGACACAC 61.415 66.667 0.00 0.00 40.31 3.82
19 20 3.012859 TATGCGCAAGAGGCCGACA 62.013 57.895 17.11 0.00 40.31 4.35
20 21 2.202878 TATGCGCAAGAGGCCGAC 60.203 61.111 17.11 0.00 40.31 4.79
21 22 2.202878 GTATGCGCAAGAGGCCGA 60.203 61.111 17.11 0.00 40.31 5.54
22 23 2.511373 TGTATGCGCAAGAGGCCG 60.511 61.111 17.11 0.00 40.31 6.13
23 24 1.745115 TGTGTATGCGCAAGAGGCC 60.745 57.895 17.11 0.00 40.31 5.19
24 25 1.021390 AGTGTGTATGCGCAAGAGGC 61.021 55.000 17.11 4.69 43.02 4.70
25 26 1.129251 CAAGTGTGTATGCGCAAGAGG 59.871 52.381 17.11 0.00 43.02 3.69
26 27 1.800586 ACAAGTGTGTATGCGCAAGAG 59.199 47.619 17.11 0.00 35.72 2.85
27 28 1.877637 ACAAGTGTGTATGCGCAAGA 58.122 45.000 17.11 1.68 35.72 3.02
28 29 2.686558 AACAAGTGTGTATGCGCAAG 57.313 45.000 17.11 0.00 36.80 4.01
29 30 3.135225 AGTAACAAGTGTGTATGCGCAA 58.865 40.909 17.11 0.11 36.80 4.85
30 31 2.734606 GAGTAACAAGTGTGTATGCGCA 59.265 45.455 14.96 14.96 36.80 6.09
31 32 2.734606 TGAGTAACAAGTGTGTATGCGC 59.265 45.455 0.00 0.00 36.80 6.09
32 33 4.388773 ACATGAGTAACAAGTGTGTATGCG 59.611 41.667 0.00 0.00 36.80 4.73
33 34 5.862924 ACATGAGTAACAAGTGTGTATGC 57.137 39.130 0.00 0.00 36.80 3.14
34 35 6.034577 CGGTACATGAGTAACAAGTGTGTATG 59.965 42.308 0.00 0.00 37.82 2.39
35 36 6.097356 CGGTACATGAGTAACAAGTGTGTAT 58.903 40.000 0.00 0.00 37.82 2.29
36 37 5.009911 ACGGTACATGAGTAACAAGTGTGTA 59.990 40.000 0.00 0.00 37.82 2.90
37 38 4.202182 ACGGTACATGAGTAACAAGTGTGT 60.202 41.667 0.00 0.00 37.82 3.72
38 39 4.304110 ACGGTACATGAGTAACAAGTGTG 58.696 43.478 0.00 0.00 37.82 3.82
39 40 4.595762 ACGGTACATGAGTAACAAGTGT 57.404 40.909 0.00 0.00 37.82 3.55
40 41 4.556135 CGTACGGTACATGAGTAACAAGTG 59.444 45.833 17.69 0.00 37.82 3.16
41 42 4.216257 ACGTACGGTACATGAGTAACAAGT 59.784 41.667 21.06 0.96 37.82 3.16
42 43 4.726416 ACGTACGGTACATGAGTAACAAG 58.274 43.478 21.06 0.38 37.82 3.16
43 44 4.764679 ACGTACGGTACATGAGTAACAA 57.235 40.909 21.06 0.00 37.82 2.83
53 54 7.997717 GCATATGCATGGTACGTACGGTACA 62.998 48.000 22.84 14.69 45.75 2.90
54 55 5.659342 GCATATGCATGGTACGTACGGTAC 61.659 50.000 22.84 17.53 44.55 3.34
55 56 3.612241 GCATATGCATGGTACGTACGGTA 60.612 47.826 22.84 11.02 41.59 4.02
56 57 2.864882 GCATATGCATGGTACGTACGGT 60.865 50.000 22.84 7.58 41.59 4.83
57 58 1.724623 GCATATGCATGGTACGTACGG 59.275 52.381 22.84 12.07 41.59 4.02
70 71 1.577922 CCGAGTGCCATGCATATGC 59.422 57.895 21.09 21.09 41.91 3.14
71 72 0.250424 TCCCGAGTGCCATGCATATG 60.250 55.000 0.00 0.00 41.91 1.78
72 73 0.473755 TTCCCGAGTGCCATGCATAT 59.526 50.000 0.00 0.00 41.91 1.78
73 74 0.254462 TTTCCCGAGTGCCATGCATA 59.746 50.000 0.00 0.00 41.91 3.14
74 75 1.001020 TTTCCCGAGTGCCATGCAT 60.001 52.632 0.00 0.00 41.91 3.96
75 76 1.971167 GTTTCCCGAGTGCCATGCA 60.971 57.895 0.00 0.00 35.60 3.96
76 77 1.971167 TGTTTCCCGAGTGCCATGC 60.971 57.895 0.00 0.00 0.00 4.06
77 78 1.875963 GTGTTTCCCGAGTGCCATG 59.124 57.895 0.00 0.00 0.00 3.66
78 79 1.671054 CGTGTTTCCCGAGTGCCAT 60.671 57.895 0.00 0.00 0.00 4.40
79 80 2.280524 CGTGTTTCCCGAGTGCCA 60.281 61.111 0.00 0.00 0.00 4.92
80 81 0.953960 ATTCGTGTTTCCCGAGTGCC 60.954 55.000 0.00 0.00 35.49 5.01
81 82 0.872388 AATTCGTGTTTCCCGAGTGC 59.128 50.000 0.00 0.00 35.49 4.40
82 83 3.744426 AGTTAATTCGTGTTTCCCGAGTG 59.256 43.478 0.00 0.00 35.49 3.51
83 84 3.999046 AGTTAATTCGTGTTTCCCGAGT 58.001 40.909 0.00 0.00 35.49 4.18
84 85 5.404946 TCTAGTTAATTCGTGTTTCCCGAG 58.595 41.667 0.00 0.00 35.49 4.63
85 86 5.389859 TCTAGTTAATTCGTGTTTCCCGA 57.610 39.130 0.00 0.00 0.00 5.14
86 87 5.865552 TCTTCTAGTTAATTCGTGTTTCCCG 59.134 40.000 0.00 0.00 0.00 5.14
87 88 6.183360 GCTCTTCTAGTTAATTCGTGTTTCCC 60.183 42.308 0.00 0.00 0.00 3.97
88 89 6.367969 TGCTCTTCTAGTTAATTCGTGTTTCC 59.632 38.462 0.00 0.00 0.00 3.13
89 90 7.347508 TGCTCTTCTAGTTAATTCGTGTTTC 57.652 36.000 0.00 0.00 0.00 2.78
90 91 7.064728 GGATGCTCTTCTAGTTAATTCGTGTTT 59.935 37.037 0.00 0.00 0.00 2.83
91 92 6.535508 GGATGCTCTTCTAGTTAATTCGTGTT 59.464 38.462 0.00 0.00 0.00 3.32
92 93 6.043411 GGATGCTCTTCTAGTTAATTCGTGT 58.957 40.000 0.00 0.00 0.00 4.49
93 94 6.042777 TGGATGCTCTTCTAGTTAATTCGTG 58.957 40.000 0.00 0.00 0.00 4.35
94 95 6.222038 TGGATGCTCTTCTAGTTAATTCGT 57.778 37.500 0.00 0.00 0.00 3.85
95 96 6.146837 CCATGGATGCTCTTCTAGTTAATTCG 59.853 42.308 5.56 0.00 0.00 3.34
96 97 6.429385 CCCATGGATGCTCTTCTAGTTAATTC 59.571 42.308 15.22 0.00 0.00 2.17
97 98 6.101734 TCCCATGGATGCTCTTCTAGTTAATT 59.898 38.462 15.22 0.00 0.00 1.40
98 99 5.608437 TCCCATGGATGCTCTTCTAGTTAAT 59.392 40.000 15.22 0.00 0.00 1.40
99 100 4.968719 TCCCATGGATGCTCTTCTAGTTAA 59.031 41.667 15.22 0.00 0.00 2.01
100 101 4.556697 TCCCATGGATGCTCTTCTAGTTA 58.443 43.478 15.22 0.00 0.00 2.24
101 102 3.387962 TCCCATGGATGCTCTTCTAGTT 58.612 45.455 15.22 0.00 0.00 2.24
102 103 2.971330 CTCCCATGGATGCTCTTCTAGT 59.029 50.000 15.22 0.00 0.00 2.57
103 104 2.302445 CCTCCCATGGATGCTCTTCTAG 59.698 54.545 15.22 0.00 0.00 2.43
104 105 2.333069 CCTCCCATGGATGCTCTTCTA 58.667 52.381 15.22 0.00 0.00 2.10
105 106 1.138568 CCTCCCATGGATGCTCTTCT 58.861 55.000 15.22 0.00 0.00 2.85
106 107 0.110104 CCCTCCCATGGATGCTCTTC 59.890 60.000 15.22 0.00 0.00 2.87
107 108 0.327867 TCCCTCCCATGGATGCTCTT 60.328 55.000 15.22 0.00 0.00 2.85
108 109 1.059006 GTCCCTCCCATGGATGCTCT 61.059 60.000 15.22 0.00 33.65 4.09
109 110 1.453669 GTCCCTCCCATGGATGCTC 59.546 63.158 15.22 0.00 33.65 4.26
110 111 2.446848 CGTCCCTCCCATGGATGCT 61.447 63.158 15.22 0.00 33.65 3.79
111 112 1.772819 ATCGTCCCTCCCATGGATGC 61.773 60.000 15.22 0.00 38.54 3.91
112 113 0.035881 CATCGTCCCTCCCATGGATG 59.964 60.000 15.22 5.06 39.77 3.51
113 114 1.130054 CCATCGTCCCTCCCATGGAT 61.130 60.000 15.22 0.00 38.52 3.41
114 115 1.766059 CCATCGTCCCTCCCATGGA 60.766 63.158 15.22 0.00 38.52 3.41
115 116 2.822637 CCCATCGTCCCTCCCATGG 61.823 68.421 4.14 4.14 36.32 3.66
116 117 2.072487 ACCCATCGTCCCTCCCATG 61.072 63.158 0.00 0.00 0.00 3.66
117 118 2.072487 CACCCATCGTCCCTCCCAT 61.072 63.158 0.00 0.00 0.00 4.00
118 119 2.687200 CACCCATCGTCCCTCCCA 60.687 66.667 0.00 0.00 0.00 4.37
119 120 2.298661 AACACCCATCGTCCCTCCC 61.299 63.158 0.00 0.00 0.00 4.30
120 121 1.078426 CAACACCCATCGTCCCTCC 60.078 63.158 0.00 0.00 0.00 4.30
121 122 1.078426 CCAACACCCATCGTCCCTC 60.078 63.158 0.00 0.00 0.00 4.30
122 123 2.602676 CCCAACACCCATCGTCCCT 61.603 63.158 0.00 0.00 0.00 4.20
123 124 2.045340 CCCAACACCCATCGTCCC 60.045 66.667 0.00 0.00 0.00 4.46
124 125 1.674322 CACCCAACACCCATCGTCC 60.674 63.158 0.00 0.00 0.00 4.79
125 126 0.035439 ATCACCCAACACCCATCGTC 60.035 55.000 0.00 0.00 0.00 4.20
126 127 1.209504 CTATCACCCAACACCCATCGT 59.790 52.381 0.00 0.00 0.00 3.73
127 128 1.484653 TCTATCACCCAACACCCATCG 59.515 52.381 0.00 0.00 0.00 3.84
128 129 2.505819 AGTCTATCACCCAACACCCATC 59.494 50.000 0.00 0.00 0.00 3.51
129 130 2.239654 CAGTCTATCACCCAACACCCAT 59.760 50.000 0.00 0.00 0.00 4.00
130 131 1.628340 CAGTCTATCACCCAACACCCA 59.372 52.381 0.00 0.00 0.00 4.51
131 132 1.906574 TCAGTCTATCACCCAACACCC 59.093 52.381 0.00 0.00 0.00 4.61
132 133 3.914426 ATCAGTCTATCACCCAACACC 57.086 47.619 0.00 0.00 0.00 4.16
133 134 4.406003 ACCTATCAGTCTATCACCCAACAC 59.594 45.833 0.00 0.00 0.00 3.32
134 135 4.620723 ACCTATCAGTCTATCACCCAACA 58.379 43.478 0.00 0.00 0.00 3.33
135 136 5.615925 AACCTATCAGTCTATCACCCAAC 57.384 43.478 0.00 0.00 0.00 3.77
136 137 7.402071 ACTTTAACCTATCAGTCTATCACCCAA 59.598 37.037 0.00 0.00 0.00 4.12
137 138 6.901300 ACTTTAACCTATCAGTCTATCACCCA 59.099 38.462 0.00 0.00 0.00 4.51
138 139 7.069578 TGACTTTAACCTATCAGTCTATCACCC 59.930 40.741 4.77 0.00 37.21 4.61
139 140 8.008513 TGACTTTAACCTATCAGTCTATCACC 57.991 38.462 4.77 0.00 37.21 4.02
140 141 7.650104 GCTGACTTTAACCTATCAGTCTATCAC 59.350 40.741 4.77 0.00 40.61 3.06
141 142 7.342026 TGCTGACTTTAACCTATCAGTCTATCA 59.658 37.037 4.77 0.00 40.61 2.15
142 143 7.717568 TGCTGACTTTAACCTATCAGTCTATC 58.282 38.462 4.77 0.00 40.61 2.08
143 144 7.661536 TGCTGACTTTAACCTATCAGTCTAT 57.338 36.000 4.77 0.00 40.61 1.98
144 145 7.342026 TGATGCTGACTTTAACCTATCAGTCTA 59.658 37.037 4.77 0.00 40.61 2.59
145 146 6.155221 TGATGCTGACTTTAACCTATCAGTCT 59.845 38.462 4.77 0.00 40.61 3.24
146 147 6.256757 GTGATGCTGACTTTAACCTATCAGTC 59.743 42.308 0.00 0.00 40.61 3.51
147 148 6.109359 GTGATGCTGACTTTAACCTATCAGT 58.891 40.000 0.00 0.00 40.61 3.41
148 149 6.108687 TGTGATGCTGACTTTAACCTATCAG 58.891 40.000 0.00 0.00 41.29 2.90
149 150 6.048732 TGTGATGCTGACTTTAACCTATCA 57.951 37.500 0.00 0.00 0.00 2.15
150 151 5.525378 CCTGTGATGCTGACTTTAACCTATC 59.475 44.000 0.00 0.00 0.00 2.08
151 152 5.189736 TCCTGTGATGCTGACTTTAACCTAT 59.810 40.000 0.00 0.00 0.00 2.57
152 153 4.530553 TCCTGTGATGCTGACTTTAACCTA 59.469 41.667 0.00 0.00 0.00 3.08
153 154 3.327757 TCCTGTGATGCTGACTTTAACCT 59.672 43.478 0.00 0.00 0.00 3.50
154 155 3.674997 TCCTGTGATGCTGACTTTAACC 58.325 45.455 0.00 0.00 0.00 2.85
155 156 4.333926 GGATCCTGTGATGCTGACTTTAAC 59.666 45.833 3.84 0.00 36.48 2.01
156 157 4.225942 AGGATCCTGTGATGCTGACTTTAA 59.774 41.667 15.29 0.00 46.62 1.52
157 158 3.776969 AGGATCCTGTGATGCTGACTTTA 59.223 43.478 15.29 0.00 46.62 1.85
158 159 2.575279 AGGATCCTGTGATGCTGACTTT 59.425 45.455 15.29 0.00 46.62 2.66
159 160 2.194859 AGGATCCTGTGATGCTGACTT 58.805 47.619 15.29 0.00 46.62 3.01
160 161 1.876849 AGGATCCTGTGATGCTGACT 58.123 50.000 15.29 0.00 46.62 3.41
165 166 5.311265 TGATCAATTAGGATCCTGTGATGC 58.689 41.667 28.54 21.94 42.41 3.91
166 167 6.996879 ACTTGATCAATTAGGATCCTGTGATG 59.003 38.462 28.54 20.25 42.41 3.07
167 168 6.996879 CACTTGATCAATTAGGATCCTGTGAT 59.003 38.462 25.80 25.80 42.49 3.06
168 169 6.156775 TCACTTGATCAATTAGGATCCTGTGA 59.843 38.462 25.28 22.46 44.09 3.58
169 170 6.351711 TCACTTGATCAATTAGGATCCTGTG 58.648 40.000 25.28 17.99 42.41 3.66
170 171 6.566079 TCACTTGATCAATTAGGATCCTGT 57.434 37.500 25.28 10.11 42.41 4.00
171 172 9.565090 TTATTCACTTGATCAATTAGGATCCTG 57.435 33.333 25.28 8.53 42.41 3.86
182 183 9.681692 CTGTTTCATGTTTATTCACTTGATCAA 57.318 29.630 8.12 8.12 32.51 2.57
183 184 9.065798 TCTGTTTCATGTTTATTCACTTGATCA 57.934 29.630 0.00 0.00 32.51 2.92
184 185 9.897744 TTCTGTTTCATGTTTATTCACTTGATC 57.102 29.630 0.00 0.00 32.51 2.92
185 186 9.683069 GTTCTGTTTCATGTTTATTCACTTGAT 57.317 29.630 0.00 0.00 32.51 2.57
186 187 8.902806 AGTTCTGTTTCATGTTTATTCACTTGA 58.097 29.630 0.00 0.00 0.00 3.02
189 190 9.778741 TCTAGTTCTGTTTCATGTTTATTCACT 57.221 29.630 0.00 0.00 0.00 3.41
196 197 8.873830 CGATGTATCTAGTTCTGTTTCATGTTT 58.126 33.333 0.00 0.00 0.00 2.83
197 198 8.251026 TCGATGTATCTAGTTCTGTTTCATGTT 58.749 33.333 0.00 0.00 0.00 2.71
198 199 7.772166 TCGATGTATCTAGTTCTGTTTCATGT 58.228 34.615 0.00 0.00 0.00 3.21
199 200 8.634475 TTCGATGTATCTAGTTCTGTTTCATG 57.366 34.615 0.00 0.00 0.00 3.07
200 201 9.823647 ATTTCGATGTATCTAGTTCTGTTTCAT 57.176 29.630 0.00 0.00 0.00 2.57
220 221 9.321562 GGGAGTATGTTGTATTCTTTATTTCGA 57.678 33.333 0.00 0.00 0.00 3.71
221 222 9.326413 AGGGAGTATGTTGTATTCTTTATTTCG 57.674 33.333 0.00 0.00 0.00 3.46
223 224 9.628500 GGAGGGAGTATGTTGTATTCTTTATTT 57.372 33.333 0.00 0.00 0.00 1.40
224 225 7.931948 CGGAGGGAGTATGTTGTATTCTTTATT 59.068 37.037 0.00 0.00 0.00 1.40
225 226 7.070821 ACGGAGGGAGTATGTTGTATTCTTTAT 59.929 37.037 0.00 0.00 0.00 1.40
226 227 6.381994 ACGGAGGGAGTATGTTGTATTCTTTA 59.618 38.462 0.00 0.00 0.00 1.85
227 228 5.189145 ACGGAGGGAGTATGTTGTATTCTTT 59.811 40.000 0.00 0.00 0.00 2.52
228 229 4.715297 ACGGAGGGAGTATGTTGTATTCTT 59.285 41.667 0.00 0.00 0.00 2.52
229 230 4.287552 ACGGAGGGAGTATGTTGTATTCT 58.712 43.478 0.00 0.00 0.00 2.40
230 231 4.341520 AGACGGAGGGAGTATGTTGTATTC 59.658 45.833 0.00 0.00 0.00 1.75
231 232 4.287552 AGACGGAGGGAGTATGTTGTATT 58.712 43.478 0.00 0.00 0.00 1.89
232 233 3.890147 GAGACGGAGGGAGTATGTTGTAT 59.110 47.826 0.00 0.00 0.00 2.29
233 234 3.285484 GAGACGGAGGGAGTATGTTGTA 58.715 50.000 0.00 0.00 0.00 2.41
234 235 2.100989 GAGACGGAGGGAGTATGTTGT 58.899 52.381 0.00 0.00 0.00 3.32
235 236 2.100197 TGAGACGGAGGGAGTATGTTG 58.900 52.381 0.00 0.00 0.00 3.33
236 237 2.526888 TGAGACGGAGGGAGTATGTT 57.473 50.000 0.00 0.00 0.00 2.71
237 238 2.526888 TTGAGACGGAGGGAGTATGT 57.473 50.000 0.00 0.00 0.00 2.29
238 239 3.887621 TTTTGAGACGGAGGGAGTATG 57.112 47.619 0.00 0.00 0.00 2.39
239 240 7.728981 TCTTATATTTTGAGACGGAGGGAGTAT 59.271 37.037 0.00 0.00 0.00 2.12
240 241 7.064866 TCTTATATTTTGAGACGGAGGGAGTA 58.935 38.462 0.00 0.00 0.00 2.59
241 242 5.897824 TCTTATATTTTGAGACGGAGGGAGT 59.102 40.000 0.00 0.00 0.00 3.85
242 243 6.406692 TCTTATATTTTGAGACGGAGGGAG 57.593 41.667 0.00 0.00 0.00 4.30
243 244 6.383147 AGTTCTTATATTTTGAGACGGAGGGA 59.617 38.462 0.00 0.00 0.00 4.20
244 245 6.583562 AGTTCTTATATTTTGAGACGGAGGG 58.416 40.000 0.00 0.00 0.00 4.30
245 246 8.494016 AAAGTTCTTATATTTTGAGACGGAGG 57.506 34.615 0.00 0.00 0.00 4.30
277 278 5.698089 GTCCCGTTTTTAACACTAGCTTAGT 59.302 40.000 0.00 0.00 40.28 2.24
278 279 5.164022 CGTCCCGTTTTTAACACTAGCTTAG 60.164 44.000 0.00 0.00 0.00 2.18
279 280 4.685628 CGTCCCGTTTTTAACACTAGCTTA 59.314 41.667 0.00 0.00 0.00 3.09
280 281 3.495753 CGTCCCGTTTTTAACACTAGCTT 59.504 43.478 0.00 0.00 0.00 3.74
281 282 3.062042 CGTCCCGTTTTTAACACTAGCT 58.938 45.455 0.00 0.00 0.00 3.32
282 283 2.411935 GCGTCCCGTTTTTAACACTAGC 60.412 50.000 0.00 0.00 0.00 3.42
283 284 2.159934 CGCGTCCCGTTTTTAACACTAG 60.160 50.000 0.00 0.00 0.00 2.57
284 285 1.791785 CGCGTCCCGTTTTTAACACTA 59.208 47.619 0.00 0.00 0.00 2.74
285 286 0.582960 CGCGTCCCGTTTTTAACACT 59.417 50.000 0.00 0.00 0.00 3.55
286 287 0.581053 TCGCGTCCCGTTTTTAACAC 59.419 50.000 5.77 0.00 38.35 3.32
287 288 1.293924 TTCGCGTCCCGTTTTTAACA 58.706 45.000 5.77 0.00 38.35 2.41
288 289 2.599739 ATTCGCGTCCCGTTTTTAAC 57.400 45.000 5.77 0.00 38.35 2.01
289 290 3.622627 AAATTCGCGTCCCGTTTTTAA 57.377 38.095 5.77 0.00 38.35 1.52
290 291 3.003068 TGAAAATTCGCGTCCCGTTTTTA 59.997 39.130 5.77 2.30 35.31 1.52
291 292 2.223525 TGAAAATTCGCGTCCCGTTTTT 60.224 40.909 5.77 4.73 36.67 1.94
292 293 1.334243 TGAAAATTCGCGTCCCGTTTT 59.666 42.857 5.77 7.60 38.35 2.43
293 294 0.945813 TGAAAATTCGCGTCCCGTTT 59.054 45.000 5.77 0.73 38.35 3.60
294 295 0.515564 CTGAAAATTCGCGTCCCGTT 59.484 50.000 5.77 0.00 38.35 4.44
295 296 1.296056 CCTGAAAATTCGCGTCCCGT 61.296 55.000 5.77 0.00 38.35 5.28
296 297 1.017177 TCCTGAAAATTCGCGTCCCG 61.017 55.000 5.77 0.00 38.61 5.14
311 312 2.189521 GCGTGGGGGTATGTCCTG 59.810 66.667 0.00 0.00 36.25 3.86
393 395 0.590682 CACTGTGTGGTATTTGCGCA 59.409 50.000 5.66 5.66 0.00 6.09
431 434 2.094390 GGATGTATAGCCGGCGTATTCA 60.094 50.000 23.20 20.78 0.00 2.57
495 499 2.554893 GGTGTATCCGCAAAAGGACAAA 59.445 45.455 0.00 0.00 44.07 2.83
639 661 4.172512 CATGCCCTCTGCTCCGCT 62.173 66.667 0.00 0.00 42.00 5.52
724 749 4.737578 AGGGCGTCTAATACTATCTTCCA 58.262 43.478 0.00 0.00 0.00 3.53
889 925 0.250597 TCGTCCTCGACAACCTCTCA 60.251 55.000 0.00 0.00 41.35 3.27
981 1017 1.319541 TCCTCGAAGCCCTATTCTCG 58.680 55.000 0.00 0.00 0.00 4.04
1498 1560 0.880441 TGGCATTGACAACGTGATGG 59.120 50.000 0.00 0.00 0.00 3.51
1995 2058 3.462483 ACCGAATGGCATATCGTACAA 57.538 42.857 21.66 0.00 39.70 2.41
2184 2247 2.358957 TCAGGAAACAGATCCATTGCG 58.641 47.619 0.00 0.00 42.27 4.85
2190 2253 5.248640 TGTCTCAAATCAGGAAACAGATCC 58.751 41.667 0.00 0.00 35.23 3.36
2191 2254 6.373774 ACATGTCTCAAATCAGGAAACAGATC 59.626 38.462 0.00 0.00 35.23 2.75
2192 2255 6.243900 ACATGTCTCAAATCAGGAAACAGAT 58.756 36.000 0.00 0.00 38.35 2.90
2193 2256 5.624159 ACATGTCTCAAATCAGGAAACAGA 58.376 37.500 0.00 0.00 0.00 3.41
2194 2257 5.954296 ACATGTCTCAAATCAGGAAACAG 57.046 39.130 0.00 0.00 0.00 3.16
2195 2258 6.713762 AAACATGTCTCAAATCAGGAAACA 57.286 33.333 0.00 0.00 0.00 2.83
2196 2259 9.696917 AATTAAACATGTCTCAAATCAGGAAAC 57.303 29.630 0.00 0.00 0.00 2.78
2197 2260 9.695526 CAATTAAACATGTCTCAAATCAGGAAA 57.304 29.630 0.00 0.00 0.00 3.13
2198 2261 8.306038 CCAATTAAACATGTCTCAAATCAGGAA 58.694 33.333 0.00 0.00 0.00 3.36
2199 2262 7.093814 CCCAATTAAACATGTCTCAAATCAGGA 60.094 37.037 0.00 0.00 0.00 3.86
2200 2263 7.037438 CCCAATTAAACATGTCTCAAATCAGG 58.963 38.462 0.00 3.57 0.00 3.86
2201 2264 7.543172 CACCCAATTAAACATGTCTCAAATCAG 59.457 37.037 0.00 0.00 0.00 2.90
2202 2265 7.377398 CACCCAATTAAACATGTCTCAAATCA 58.623 34.615 0.00 0.00 0.00 2.57
2203 2266 6.311200 GCACCCAATTAAACATGTCTCAAATC 59.689 38.462 0.00 0.00 0.00 2.17
2204 2267 6.165577 GCACCCAATTAAACATGTCTCAAAT 58.834 36.000 0.00 0.00 0.00 2.32
2205 2268 5.510520 GGCACCCAATTAAACATGTCTCAAA 60.511 40.000 0.00 0.00 0.00 2.69
2206 2269 4.021544 GGCACCCAATTAAACATGTCTCAA 60.022 41.667 0.00 0.00 0.00 3.02
2207 2270 3.509575 GGCACCCAATTAAACATGTCTCA 59.490 43.478 0.00 0.00 0.00 3.27
2208 2271 4.110036 GGCACCCAATTAAACATGTCTC 57.890 45.455 0.00 0.00 0.00 3.36
2225 2288 2.112815 GGCGTATTGAGTGGGGCAC 61.113 63.158 0.00 0.00 34.10 5.01
2226 2289 1.920734 ATGGCGTATTGAGTGGGGCA 61.921 55.000 0.00 0.00 37.58 5.36
2227 2290 1.152963 ATGGCGTATTGAGTGGGGC 60.153 57.895 0.00 0.00 0.00 5.80
2228 2291 0.535102 GGATGGCGTATTGAGTGGGG 60.535 60.000 0.00 0.00 0.00 4.96
2229 2292 0.180171 TGGATGGCGTATTGAGTGGG 59.820 55.000 0.00 0.00 0.00 4.61
2230 2293 1.138859 TCTGGATGGCGTATTGAGTGG 59.861 52.381 0.00 0.00 0.00 4.00
2231 2294 2.602257 TCTGGATGGCGTATTGAGTG 57.398 50.000 0.00 0.00 0.00 3.51
2232 2295 4.955811 TTATCTGGATGGCGTATTGAGT 57.044 40.909 0.00 0.00 0.00 3.41
2233 2296 6.348786 CCAAATTATCTGGATGGCGTATTGAG 60.349 42.308 0.00 0.00 35.85 3.02
2234 2297 5.473162 CCAAATTATCTGGATGGCGTATTGA 59.527 40.000 0.00 0.00 35.85 2.57
2235 2298 5.241506 ACCAAATTATCTGGATGGCGTATTG 59.758 40.000 1.57 0.00 37.40 1.90
2236 2299 5.385198 ACCAAATTATCTGGATGGCGTATT 58.615 37.500 1.57 0.00 37.40 1.89
2237 2300 4.985538 ACCAAATTATCTGGATGGCGTAT 58.014 39.130 1.57 0.00 37.40 3.06
2238 2301 4.431416 ACCAAATTATCTGGATGGCGTA 57.569 40.909 1.57 0.00 37.40 4.42
2239 2302 3.297134 ACCAAATTATCTGGATGGCGT 57.703 42.857 1.57 0.00 37.40 5.68
2240 2303 4.319477 CGTAACCAAATTATCTGGATGGCG 60.319 45.833 1.57 0.00 37.40 5.69
2241 2304 4.556699 GCGTAACCAAATTATCTGGATGGC 60.557 45.833 1.57 0.00 37.40 4.40
2242 2305 4.578516 TGCGTAACCAAATTATCTGGATGG 59.421 41.667 1.57 0.00 37.40 3.51
2243 2306 5.510671 GTGCGTAACCAAATTATCTGGATG 58.489 41.667 1.57 0.00 37.40 3.51
2244 2307 5.751243 GTGCGTAACCAAATTATCTGGAT 57.249 39.130 1.57 0.00 37.40 3.41
2277 2340 1.031571 TTTTAGCGAGCCCATGCAGG 61.032 55.000 0.00 0.00 41.13 4.85
2278 2341 0.099436 GTTTTAGCGAGCCCATGCAG 59.901 55.000 0.00 0.00 41.13 4.41
2279 2342 1.643868 CGTTTTAGCGAGCCCATGCA 61.644 55.000 0.00 0.00 41.13 3.96
2280 2343 1.062525 CGTTTTAGCGAGCCCATGC 59.937 57.895 0.00 0.00 37.95 4.06
2281 2344 0.802494 AACGTTTTAGCGAGCCCATG 59.198 50.000 0.00 0.00 35.59 3.66
2282 2345 0.802494 CAACGTTTTAGCGAGCCCAT 59.198 50.000 0.00 0.00 35.59 4.00
2283 2346 0.533308 ACAACGTTTTAGCGAGCCCA 60.533 50.000 0.00 0.00 35.59 5.36
2284 2347 1.431496 TACAACGTTTTAGCGAGCCC 58.569 50.000 0.00 0.00 35.59 5.19
2285 2348 2.411935 GGTTACAACGTTTTAGCGAGCC 60.412 50.000 0.00 0.00 35.59 4.70
2286 2349 2.477754 AGGTTACAACGTTTTAGCGAGC 59.522 45.455 0.00 0.00 35.59 5.03
2287 2350 6.527722 TGTATAGGTTACAACGTTTTAGCGAG 59.472 38.462 0.00 0.00 35.59 5.03
2288 2351 6.385843 TGTATAGGTTACAACGTTTTAGCGA 58.614 36.000 0.00 0.00 35.59 4.93
2289 2352 6.630676 TGTATAGGTTACAACGTTTTAGCG 57.369 37.500 0.00 0.00 37.94 4.26
2290 2353 6.903479 GCATGTATAGGTTACAACGTTTTAGC 59.097 38.462 0.00 0.00 0.00 3.09
2291 2354 7.901377 GTGCATGTATAGGTTACAACGTTTTAG 59.099 37.037 0.00 0.00 0.00 1.85
2292 2355 7.387122 TGTGCATGTATAGGTTACAACGTTTTA 59.613 33.333 0.00 0.00 0.00 1.52
2293 2356 6.205076 TGTGCATGTATAGGTTACAACGTTTT 59.795 34.615 0.00 0.00 0.00 2.43
2294 2357 5.701750 TGTGCATGTATAGGTTACAACGTTT 59.298 36.000 0.00 0.00 0.00 3.60
2295 2358 5.239351 TGTGCATGTATAGGTTACAACGTT 58.761 37.500 0.00 0.00 0.00 3.99
2296 2359 4.823157 TGTGCATGTATAGGTTACAACGT 58.177 39.130 0.00 0.00 0.00 3.99
2297 2360 5.984233 ATGTGCATGTATAGGTTACAACG 57.016 39.130 0.00 0.00 0.00 4.10
2298 2361 6.563381 GCGTATGTGCATGTATAGGTTACAAC 60.563 42.308 0.00 0.00 34.15 3.32
2299 2362 5.464057 GCGTATGTGCATGTATAGGTTACAA 59.536 40.000 0.00 0.00 34.15 2.41
2300 2363 4.986034 GCGTATGTGCATGTATAGGTTACA 59.014 41.667 0.00 0.00 34.15 2.41
2301 2364 4.986034 TGCGTATGTGCATGTATAGGTTAC 59.014 41.667 0.00 0.00 40.62 2.50
2302 2365 5.203060 TGCGTATGTGCATGTATAGGTTA 57.797 39.130 0.00 0.00 40.62 2.85
2303 2366 4.066646 TGCGTATGTGCATGTATAGGTT 57.933 40.909 0.00 0.00 40.62 3.50
2304 2367 3.744238 TGCGTATGTGCATGTATAGGT 57.256 42.857 0.00 0.00 40.62 3.08
2315 2378 4.783764 TCTAGTATCCCATGCGTATGTG 57.216 45.455 12.66 0.69 32.21 3.21
2317 2380 5.134202 TGTTCTAGTATCCCATGCGTATG 57.866 43.478 6.50 6.50 0.00 2.39
2320 2383 4.587262 TGTATGTTCTAGTATCCCATGCGT 59.413 41.667 0.00 0.00 0.00 5.24
2321 2384 5.134202 TGTATGTTCTAGTATCCCATGCG 57.866 43.478 0.00 0.00 0.00 4.73
2327 2390 9.968743 CGTTTCTTTTTGTATGTTCTAGTATCC 57.031 33.333 0.00 0.00 0.00 2.59
2329 2392 8.448615 GCCGTTTCTTTTTGTATGTTCTAGTAT 58.551 33.333 0.00 0.00 0.00 2.12
2343 2406 3.495753 CGTAGGTACTGCCGTTTCTTTTT 59.504 43.478 0.00 0.00 41.52 1.94
2357 2421 2.286833 TGTATCCGTTACGCGTAGGTAC 59.713 50.000 19.61 17.68 39.32 3.34
2358 2422 2.286833 GTGTATCCGTTACGCGTAGGTA 59.713 50.000 19.61 5.98 39.32 3.08
2359 2423 1.064060 GTGTATCCGTTACGCGTAGGT 59.936 52.381 19.61 7.04 39.32 3.08
2364 2428 5.004630 TCAAATTTAGTGTATCCGTTACGCG 59.995 40.000 3.53 3.53 44.43 6.01
2366 2430 9.241317 AGTATCAAATTTAGTGTATCCGTTACG 57.759 33.333 0.00 0.00 33.15 3.18
2370 2434 9.745880 CTGTAGTATCAAATTTAGTGTATCCGT 57.254 33.333 0.00 0.00 0.00 4.69
2371 2435 8.700644 GCTGTAGTATCAAATTTAGTGTATCCG 58.299 37.037 0.00 0.00 0.00 4.18
2375 2439 9.366216 CACTGCTGTAGTATCAAATTTAGTGTA 57.634 33.333 0.00 0.00 37.60 2.90
2382 2446 3.063997 GCGCACTGCTGTAGTATCAAATT 59.936 43.478 0.30 0.00 41.73 1.82
2385 2449 1.640428 GCGCACTGCTGTAGTATCAA 58.360 50.000 0.30 0.00 41.73 2.57
2403 2467 2.897350 GACATGGGCACGGCTAGC 60.897 66.667 6.04 6.04 0.00 3.42
2431 2495 5.050091 CCACAAGTTATGAAGTATCATCCGC 60.050 44.000 0.00 0.00 42.75 5.54
2432 2496 6.280643 TCCACAAGTTATGAAGTATCATCCG 58.719 40.000 0.00 0.00 42.75 4.18
2446 2524 5.128827 GGTCACTATCTCCATCCACAAGTTA 59.871 44.000 0.00 0.00 0.00 2.24
2457 2535 2.766263 GTGGTCATGGTCACTATCTCCA 59.234 50.000 10.65 0.00 35.64 3.86
2459 2537 2.766263 TGGTGGTCATGGTCACTATCTC 59.234 50.000 15.36 3.73 34.57 2.75
2559 2637 1.298638 CATCTGATCTCGCACGCGA 60.299 57.895 15.93 14.15 46.87 5.87
2626 2704 2.617274 GCACGGAGGTTGCAGGTTC 61.617 63.158 0.00 0.00 0.00 3.62
2635 2713 3.640407 ATGGTGCAGCACGGAGGT 61.640 61.111 22.79 0.21 34.83 3.85
2649 2727 5.276270 CGGCATTCTAATCTTTGTTCATGG 58.724 41.667 0.00 0.00 0.00 3.66
2672 2750 0.537188 TCTCATTCCACCTTCTCCGC 59.463 55.000 0.00 0.00 0.00 5.54
2681 2759 1.825474 TCCGAGACCTTCTCATTCCAC 59.175 52.381 4.16 0.00 43.55 4.02
2692 3344 3.236896 TGAGGTAAGTTTTCCGAGACCT 58.763 45.455 0.00 0.00 40.01 3.85
2700 3442 5.237779 TGTGAACGGAATGAGGTAAGTTTTC 59.762 40.000 0.00 0.00 0.00 2.29
2711 3453 4.594123 TCTACAAGTGTGAACGGAATGA 57.406 40.909 0.00 0.00 0.00 2.57
2749 3491 3.493873 GGTTTGTCTCCGGTACAGAACTT 60.494 47.826 21.36 0.00 0.00 2.66
2758 3500 1.111116 TCGTCTGGTTTGTCTCCGGT 61.111 55.000 0.00 0.00 33.44 5.28
2848 3590 3.655276 AGTAGTTCAACACCACCTACG 57.345 47.619 0.00 0.00 34.58 3.51
2850 3592 3.507233 CCGTAGTAGTTCAACACCACCTA 59.493 47.826 0.00 0.00 0.00 3.08
2876 3618 1.154413 CAAGCATGTGTTCGTCCGC 60.154 57.895 0.00 0.00 0.00 5.54
2894 3636 2.513897 ACATTAGCCGCGCTTCCC 60.514 61.111 5.56 0.00 40.44 3.97
2896 3638 0.806102 TCTCACATTAGCCGCGCTTC 60.806 55.000 5.56 0.00 40.44 3.86
2901 3643 1.003116 CATTGCTCTCACATTAGCCGC 60.003 52.381 0.00 0.00 37.97 6.53
2910 3652 1.407989 CCCCTTCTCCATTGCTCTCAC 60.408 57.143 0.00 0.00 0.00 3.51
2917 3659 0.750911 GCAGCTCCCCTTCTCCATTG 60.751 60.000 0.00 0.00 0.00 2.82
2962 3704 2.679336 CTGCCTTTTTAAATGCCATGCC 59.321 45.455 0.00 0.00 0.00 4.40
2970 3712 3.691609 CGCTCCTCTCTGCCTTTTTAAAT 59.308 43.478 0.00 0.00 0.00 1.40
3001 3743 3.032017 TGCTTCAGTCTCAACAGCTAC 57.968 47.619 0.00 0.00 0.00 3.58
3006 3748 1.527034 GCCATGCTTCAGTCTCAACA 58.473 50.000 0.00 0.00 0.00 3.33
3011 3753 0.111061 TGTTGGCCATGCTTCAGTCT 59.889 50.000 6.09 0.00 0.00 3.24
3020 3762 1.176527 CTTAGGTGGTGTTGGCCATG 58.823 55.000 6.09 0.00 41.08 3.66
3024 3766 0.608308 GGGACTTAGGTGGTGTTGGC 60.608 60.000 0.00 0.00 0.00 4.52
3032 3774 2.291043 ACCAGGCGGGACTTAGGTG 61.291 63.158 11.67 0.00 41.15 4.00
3034 3777 2.584608 CACCAGGCGGGACTTAGG 59.415 66.667 11.67 0.00 41.15 2.69
3058 3803 1.116536 TGACCTGTAGCCACAACGGA 61.117 55.000 0.00 0.00 36.56 4.69
3116 3861 3.598019 TCTGGTGTTGATAACGGGTAC 57.402 47.619 0.00 0.00 0.00 3.34
3119 3864 2.288666 CCATCTGGTGTTGATAACGGG 58.711 52.381 0.00 0.00 0.00 5.28
3125 3870 2.097036 CACATGCCATCTGGTGTTGAT 58.903 47.619 0.00 0.00 37.57 2.57
3129 3874 1.000521 CCCACATGCCATCTGGTGT 60.001 57.895 0.00 0.00 37.57 4.16
3152 3897 4.333926 GCGTATTCTTCTCTGCCTTCATTT 59.666 41.667 0.00 0.00 0.00 2.32
3154 3899 3.462021 GCGTATTCTTCTCTGCCTTCAT 58.538 45.455 0.00 0.00 0.00 2.57
3158 3903 0.528684 GCGCGTATTCTTCTCTGCCT 60.529 55.000 8.43 0.00 0.00 4.75
3167 3913 2.291465 TCTTGTATACCGCGCGTATTCT 59.709 45.455 29.95 10.76 38.64 2.40
3168 3914 2.653890 TCTTGTATACCGCGCGTATTC 58.346 47.619 29.95 21.29 38.64 1.75
3175 3921 3.179010 CGTACAACATCTTGTATACCGCG 59.821 47.826 0.00 0.00 43.31 6.46
3179 3925 4.025979 GGCAGCGTACAACATCTTGTATAC 60.026 45.833 0.00 0.00 43.31 1.47
3204 3950 0.300789 GTGCGCGTATAAACTCAGCC 59.699 55.000 8.43 0.00 0.00 4.85
3221 3967 2.597305 GTGCTAACTCCAATACGACGTG 59.403 50.000 11.56 0.00 0.00 4.49
3255 4001 1.078497 TTATCCGCACCACTGGCAG 60.078 57.895 14.16 14.16 0.00 4.85
3259 4005 1.082117 GGACGTTATCCGCACCACTG 61.082 60.000 0.00 0.00 41.42 3.66
3295 4041 6.587651 GTTTTTAACGCTAATTCGTCTCTGT 58.412 36.000 0.00 0.00 42.46 3.41
3314 4060 8.852135 TCTGTCCCAAAATATAAGAACGTTTTT 58.148 29.630 9.22 9.22 0.00 1.94
3315 4061 8.398878 TCTGTCCCAAAATATAAGAACGTTTT 57.601 30.769 0.46 0.00 0.00 2.43
3319 4065 5.527582 CCCTCTGTCCCAAAATATAAGAACG 59.472 44.000 0.00 0.00 0.00 3.95
3320 4066 6.659824 TCCCTCTGTCCCAAAATATAAGAAC 58.340 40.000 0.00 0.00 0.00 3.01
3321 4067 6.447084 ACTCCCTCTGTCCCAAAATATAAGAA 59.553 38.462 0.00 0.00 0.00 2.52
3323 4069 6.253946 ACTCCCTCTGTCCCAAAATATAAG 57.746 41.667 0.00 0.00 0.00 1.73
3324 4070 7.136885 TCTACTCCCTCTGTCCCAAAATATAA 58.863 38.462 0.00 0.00 0.00 0.98
3331 4077 2.314852 TCATCTACTCCCTCTGTCCCAA 59.685 50.000 0.00 0.00 0.00 4.12
3333 4079 2.091555 ACTCATCTACTCCCTCTGTCCC 60.092 54.545 0.00 0.00 0.00 4.46
3336 4082 6.322712 GTGATTTACTCATCTACTCCCTCTGT 59.677 42.308 0.00 0.00 35.97 3.41
3337 4083 6.239176 GGTGATTTACTCATCTACTCCCTCTG 60.239 46.154 0.00 0.00 35.97 3.35
3338 4084 5.836358 GGTGATTTACTCATCTACTCCCTCT 59.164 44.000 0.00 0.00 35.97 3.69
3339 4085 5.278561 CGGTGATTTACTCATCTACTCCCTC 60.279 48.000 0.00 0.00 35.97 4.30
3340 4086 4.585162 CGGTGATTTACTCATCTACTCCCT 59.415 45.833 0.00 0.00 35.97 4.20
3341 4087 4.796618 GCGGTGATTTACTCATCTACTCCC 60.797 50.000 0.00 0.00 35.97 4.30
3342 4088 4.038162 AGCGGTGATTTACTCATCTACTCC 59.962 45.833 0.00 0.00 35.97 3.85
3343 4089 5.189659 AGCGGTGATTTACTCATCTACTC 57.810 43.478 0.00 0.00 35.97 2.59
3344 4090 4.261238 CGAGCGGTGATTTACTCATCTACT 60.261 45.833 0.00 0.00 35.97 2.57
3345 4091 3.975670 CGAGCGGTGATTTACTCATCTAC 59.024 47.826 0.00 0.00 35.97 2.59
3346 4092 3.881089 TCGAGCGGTGATTTACTCATCTA 59.119 43.478 0.00 0.00 35.97 1.98
3347 4093 2.688446 TCGAGCGGTGATTTACTCATCT 59.312 45.455 0.00 0.00 35.97 2.90
3348 4094 3.079960 TCGAGCGGTGATTTACTCATC 57.920 47.619 0.00 0.00 35.97 2.92
3349 4095 3.187700 GTTCGAGCGGTGATTTACTCAT 58.812 45.455 0.00 0.00 35.97 2.90
3350 4096 2.602878 GTTCGAGCGGTGATTTACTCA 58.397 47.619 0.00 0.00 0.00 3.41
3351 4097 1.582502 CGTTCGAGCGGTGATTTACTC 59.417 52.381 14.37 0.00 0.00 2.59
3352 4098 1.625616 CGTTCGAGCGGTGATTTACT 58.374 50.000 14.37 0.00 0.00 2.24
3353 4099 0.024619 GCGTTCGAGCGGTGATTTAC 59.975 55.000 23.12 0.00 0.00 2.01
3354 4100 0.388778 TGCGTTCGAGCGGTGATTTA 60.389 50.000 23.12 0.00 40.67 1.40
3355 4101 1.225376 TTGCGTTCGAGCGGTGATTT 61.225 50.000 23.12 0.00 40.67 2.17
3356 4102 1.019278 ATTGCGTTCGAGCGGTGATT 61.019 50.000 23.12 0.00 40.67 2.57
3357 4103 1.019278 AATTGCGTTCGAGCGGTGAT 61.019 50.000 23.12 0.00 40.67 3.06
3358 4104 0.388778 TAATTGCGTTCGAGCGGTGA 60.389 50.000 23.12 0.00 40.67 4.02
3359 4105 0.650512 ATAATTGCGTTCGAGCGGTG 59.349 50.000 23.12 0.00 40.67 4.94
3360 4106 0.650512 CATAATTGCGTTCGAGCGGT 59.349 50.000 23.12 0.00 40.67 5.68
3361 4107 0.654472 GCATAATTGCGTTCGAGCGG 60.654 55.000 23.12 5.68 39.49 5.52
3362 4108 2.758356 GCATAATTGCGTTCGAGCG 58.242 52.632 17.91 17.91 39.49 5.03
3372 4118 6.441093 TCTCTGGTAAGCTTTGCATAATTG 57.559 37.500 3.20 0.00 0.00 2.32
3373 4119 6.830324 TCATCTCTGGTAAGCTTTGCATAATT 59.170 34.615 3.20 0.00 0.00 1.40
3374 4120 6.359804 TCATCTCTGGTAAGCTTTGCATAAT 58.640 36.000 3.20 0.00 0.00 1.28
3375 4121 5.744171 TCATCTCTGGTAAGCTTTGCATAA 58.256 37.500 3.20 0.00 0.00 1.90
3376 4122 5.357742 TCATCTCTGGTAAGCTTTGCATA 57.642 39.130 3.20 0.00 0.00 3.14
3377 4123 4.226427 TCATCTCTGGTAAGCTTTGCAT 57.774 40.909 3.20 0.00 0.00 3.96
3378 4124 3.701205 TCATCTCTGGTAAGCTTTGCA 57.299 42.857 3.20 0.00 0.00 4.08
3379 4125 5.236047 CACTATCATCTCTGGTAAGCTTTGC 59.764 44.000 3.20 0.00 0.00 3.68
3380 4126 6.577103 TCACTATCATCTCTGGTAAGCTTTG 58.423 40.000 3.20 0.00 0.00 2.77
3381 4127 6.798427 TCACTATCATCTCTGGTAAGCTTT 57.202 37.500 3.20 0.00 0.00 3.51
3382 4128 6.155221 TGTTCACTATCATCTCTGGTAAGCTT 59.845 38.462 3.48 3.48 0.00 3.74
3383 4129 5.658634 TGTTCACTATCATCTCTGGTAAGCT 59.341 40.000 0.00 0.00 0.00 3.74
3384 4130 5.907207 TGTTCACTATCATCTCTGGTAAGC 58.093 41.667 0.00 0.00 0.00 3.09
3388 4134 9.911788 AAAATATTGTTCACTATCATCTCTGGT 57.088 29.630 0.00 0.00 0.00 4.00
3412 4158 2.892215 TCCATGCAGCATCACTCAAAAA 59.108 40.909 4.38 0.00 0.00 1.94
3413 4159 2.229543 GTCCATGCAGCATCACTCAAAA 59.770 45.455 4.38 0.00 0.00 2.44
3414 4160 1.814394 GTCCATGCAGCATCACTCAAA 59.186 47.619 4.38 0.00 0.00 2.69
3415 4161 1.456296 GTCCATGCAGCATCACTCAA 58.544 50.000 4.38 0.00 0.00 3.02
3416 4162 0.741927 CGTCCATGCAGCATCACTCA 60.742 55.000 4.38 0.00 0.00 3.41
3417 4163 0.460811 TCGTCCATGCAGCATCACTC 60.461 55.000 4.38 0.00 0.00 3.51
3418 4164 0.742281 GTCGTCCATGCAGCATCACT 60.742 55.000 4.38 0.00 0.00 3.41
3419 4165 1.020861 TGTCGTCCATGCAGCATCAC 61.021 55.000 4.38 4.40 0.00 3.06
3420 4166 0.321475 TTGTCGTCCATGCAGCATCA 60.321 50.000 4.38 0.00 0.00 3.07
3421 4167 0.804364 TTTGTCGTCCATGCAGCATC 59.196 50.000 4.38 0.00 0.00 3.91
3422 4168 1.246649 TTTTGTCGTCCATGCAGCAT 58.753 45.000 0.52 0.52 0.00 3.79
3423 4169 1.028130 TTTTTGTCGTCCATGCAGCA 58.972 45.000 0.00 0.00 0.00 4.41
3424 4170 3.863681 TTTTTGTCGTCCATGCAGC 57.136 47.368 0.00 0.00 0.00 5.25


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.