Multiple sequence alignment - TraesCS6B01G019600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G019600 chr6B 100.000 3107 0 0 1 3107 11791361 11794467 0.000000e+00 5738
1 TraesCS6B01G019600 chr6B 85.383 732 85 14 700 1424 11592563 11593279 0.000000e+00 739
2 TraesCS6B01G019600 chr6B 88.406 345 40 0 2763 3107 11599600 11599944 1.720000e-112 416
3 TraesCS6B01G019600 chr6B 90.094 212 21 0 1425 1636 11593367 11593578 3.050000e-70 276
4 TraesCS6B01G019600 chr6B 84.838 277 29 6 597 867 11764474 11764743 1.840000e-67 267
5 TraesCS6B01G019600 chr6B 95.161 62 3 0 644 705 11762142 11762203 7.090000e-17 99
6 TraesCS6B01G019600 chr6D 95.174 1720 66 6 1404 3107 6496776 6498494 0.000000e+00 2700
7 TraesCS6B01G019600 chr6D 84.353 1291 169 13 1835 3107 6371092 6372367 0.000000e+00 1234
8 TraesCS6B01G019600 chr6D 93.052 734 41 3 1432 2156 6352213 6352945 0.000000e+00 1064
9 TraesCS6B01G019600 chr6D 83.188 1035 154 11 2082 3107 6352943 6353966 0.000000e+00 929
10 TraesCS6B01G019600 chr6D 84.184 803 70 22 633 1417 6424848 6425611 0.000000e+00 726
11 TraesCS6B01G019600 chr6D 85.411 706 76 14 725 1417 6351348 6352039 0.000000e+00 708
12 TraesCS6B01G019600 chr6D 82.426 808 120 14 2310 3107 6426497 6427292 0.000000e+00 686
13 TraesCS6B01G019600 chr6D 90.737 475 35 4 946 1417 6496249 6496717 2.630000e-175 625
14 TraesCS6B01G019600 chr6D 84.323 606 60 19 824 1417 6441657 6442239 7.520000e-156 560
15 TraesCS6B01G019600 chr6D 87.657 397 43 4 978 1371 6370241 6370634 1.020000e-124 457
16 TraesCS6B01G019600 chr6D 87.172 343 44 0 1432 1774 6425713 6426055 1.040000e-104 390
17 TraesCS6B01G019600 chr6D 86.167 347 47 1 1428 1774 6442338 6442683 1.050000e-99 374
18 TraesCS6B01G019600 chr6D 82.273 440 60 11 993 1420 7032265 7032698 6.330000e-97 364
19 TraesCS6B01G019600 chr6D 86.061 330 38 1 1835 2156 6442714 6443043 6.380000e-92 348
20 TraesCS6B01G019600 chr6D 90.494 263 25 0 2845 3107 6465690 6465952 6.380000e-92 348
21 TraesCS6B01G019600 chr6D 84.074 270 21 11 656 919 6495999 6496252 1.110000e-59 241
22 TraesCS6B01G019600 chr6D 92.216 167 13 0 2684 2850 6456978 6457144 1.440000e-58 237
23 TraesCS6B01G019600 chr6D 77.907 258 55 2 2092 2348 6497688 6497944 3.210000e-35 159
24 TraesCS6B01G019600 chr6A 84.447 1048 143 9 2069 3107 5917658 5918694 0.000000e+00 1014
25 TraesCS6B01G019600 chr6A 84.783 782 91 15 654 1424 5900387 5901151 0.000000e+00 760
26 TraesCS6B01G019600 chr6A 84.645 775 58 23 665 1417 5939243 5939978 0.000000e+00 715
27 TraesCS6B01G019600 chr6A 82.797 808 117 12 2310 3107 5940864 5941659 0.000000e+00 702
28 TraesCS6B01G019600 chr6A 89.336 422 42 2 996 1417 5916509 5916927 7.630000e-146 527
29 TraesCS6B01G019600 chr6A 87.324 355 45 0 1420 1774 5901258 5901612 1.040000e-109 407
30 TraesCS6B01G019600 chr6A 86.006 343 48 0 1432 1774 5940080 5940422 4.890000e-98 368
31 TraesCS6B01G019600 chr6A 87.077 325 39 3 1835 2156 5917349 5917673 6.330000e-97 364
32 TraesCS6B01G019600 chr6A 82.857 245 33 3 1530 1774 5917083 5917318 8.730000e-51 211
33 TraesCS6B01G019600 chr7B 96.823 598 17 2 1 598 720542787 720542192 0.000000e+00 998
34 TraesCS6B01G019600 chr7B 95.652 598 24 2 1 598 249941119 249940524 0.000000e+00 959
35 TraesCS6B01G019600 chr4A 96.661 599 20 0 1 599 687429339 687428741 0.000000e+00 996
36 TraesCS6B01G019600 chr4A 95.652 598 25 1 1 598 466933743 466934339 0.000000e+00 959
37 TraesCS6B01G019600 chr5B 96.656 598 19 1 1 598 355239564 355238968 0.000000e+00 992
38 TraesCS6B01G019600 chr5B 96.321 598 21 1 1 598 702442181 702442777 0.000000e+00 981
39 TraesCS6B01G019600 chr2B 96.656 598 19 1 1 598 788462055 788462651 0.000000e+00 992
40 TraesCS6B01G019600 chr3B 96.488 598 20 1 1 598 549026582 549025986 0.000000e+00 987
41 TraesCS6B01G019600 chr1B 95.987 598 24 0 1 598 364273590 364272993 0.000000e+00 972


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G019600 chr6B 11791361 11794467 3106 False 5738.000000 5738 100.000000 1 3107 1 chr6B.!!$F2 3106
1 TraesCS6B01G019600 chr6B 11592563 11593578 1015 False 507.500000 739 87.738500 700 1636 2 chr6B.!!$F3 936
2 TraesCS6B01G019600 chr6D 6495999 6498494 2495 False 931.250000 2700 86.973000 656 3107 4 chr6D.!!$F8 2451
3 TraesCS6B01G019600 chr6D 6351348 6353966 2618 False 900.333333 1064 87.217000 725 3107 3 chr6D.!!$F4 2382
4 TraesCS6B01G019600 chr6D 6370241 6372367 2126 False 845.500000 1234 86.005000 978 3107 2 chr6D.!!$F5 2129
5 TraesCS6B01G019600 chr6D 6424848 6427292 2444 False 600.666667 726 84.594000 633 3107 3 chr6D.!!$F6 2474
6 TraesCS6B01G019600 chr6D 6441657 6443043 1386 False 427.333333 560 85.517000 824 2156 3 chr6D.!!$F7 1332
7 TraesCS6B01G019600 chr6A 5939243 5941659 2416 False 595.000000 715 84.482667 665 3107 3 chr6A.!!$F3 2442
8 TraesCS6B01G019600 chr6A 5900387 5901612 1225 False 583.500000 760 86.053500 654 1774 2 chr6A.!!$F1 1120
9 TraesCS6B01G019600 chr6A 5916509 5918694 2185 False 529.000000 1014 85.929250 996 3107 4 chr6A.!!$F2 2111
10 TraesCS6B01G019600 chr7B 720542192 720542787 595 True 998.000000 998 96.823000 1 598 1 chr7B.!!$R2 597
11 TraesCS6B01G019600 chr7B 249940524 249941119 595 True 959.000000 959 95.652000 1 598 1 chr7B.!!$R1 597
12 TraesCS6B01G019600 chr4A 687428741 687429339 598 True 996.000000 996 96.661000 1 599 1 chr4A.!!$R1 598
13 TraesCS6B01G019600 chr4A 466933743 466934339 596 False 959.000000 959 95.652000 1 598 1 chr4A.!!$F1 597
14 TraesCS6B01G019600 chr5B 355238968 355239564 596 True 992.000000 992 96.656000 1 598 1 chr5B.!!$R1 597
15 TraesCS6B01G019600 chr5B 702442181 702442777 596 False 981.000000 981 96.321000 1 598 1 chr5B.!!$F1 597
16 TraesCS6B01G019600 chr2B 788462055 788462651 596 False 992.000000 992 96.656000 1 598 1 chr2B.!!$F1 597
17 TraesCS6B01G019600 chr3B 549025986 549026582 596 True 987.000000 987 96.488000 1 598 1 chr3B.!!$R1 597
18 TraesCS6B01G019600 chr1B 364272993 364273590 597 True 972.000000 972 95.987000 1 598 1 chr1B.!!$R1 597

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
908 946 0.250513 CTTCTTAAGAGCACCGCCCT 59.749 55.0 5.12 0.0 0.0 5.19 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2565 2961 1.470632 CCGAGCAGACCAATCTCAGAC 60.471 57.143 0.0 0.0 30.42 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 1.490574 GGTCCATCTCTGGCTACTGT 58.509 55.000 0.00 0.00 42.80 3.55
81 82 1.033202 AAGCGACAACCCACGGTTTT 61.033 50.000 0.00 0.00 44.33 2.43
199 200 0.460311 CCCAGGCTACGGTTGTCTAG 59.540 60.000 0.00 0.00 0.00 2.43
336 337 3.309436 TTCTCCATGTGCCGACCGG 62.309 63.158 0.00 0.00 38.57 5.28
389 390 1.093159 GCCGACTTCTACCTTCGAGA 58.907 55.000 0.00 0.00 34.62 4.04
401 402 1.337821 CTTCGAGAAGTTCCGTTCCG 58.662 55.000 11.74 4.11 33.87 4.30
533 534 2.752903 GTGGCCCACCTTTGTACTTATG 59.247 50.000 1.17 0.00 36.63 1.90
599 600 6.014242 CAGCCCATATCTTGTCCTTCTACATA 60.014 42.308 0.00 0.00 0.00 2.29
600 601 6.732862 AGCCCATATCTTGTCCTTCTACATAT 59.267 38.462 0.00 0.00 0.00 1.78
601 602 7.901322 AGCCCATATCTTGTCCTTCTACATATA 59.099 37.037 0.00 0.00 0.00 0.86
602 603 7.982354 GCCCATATCTTGTCCTTCTACATATAC 59.018 40.741 0.00 0.00 0.00 1.47
603 604 9.261035 CCCATATCTTGTCCTTCTACATATACT 57.739 37.037 0.00 0.00 0.00 2.12
608 609 9.869667 ATCTTGTCCTTCTACATATACTACTGT 57.130 33.333 0.00 0.00 0.00 3.55
646 647 9.880157 TTCAAAGGGTATTACACTACTTGTATC 57.120 33.333 0.00 0.00 40.53 2.24
647 648 9.263446 TCAAAGGGTATTACACTACTTGTATCT 57.737 33.333 0.00 0.00 40.53 1.98
688 689 4.224147 ACACACACCACAGGCTACATTATA 59.776 41.667 0.00 0.00 0.00 0.98
689 690 5.182487 CACACACCACAGGCTACATTATAA 58.818 41.667 0.00 0.00 0.00 0.98
751 765 3.414700 CACGAAGCAGCCCACGAC 61.415 66.667 9.82 0.00 0.00 4.34
784 798 3.859650 GACGACTTCGACCTTGACA 57.140 52.632 5.47 0.00 43.02 3.58
785 799 2.129823 GACGACTTCGACCTTGACAA 57.870 50.000 5.47 0.00 43.02 3.18
786 800 2.466846 GACGACTTCGACCTTGACAAA 58.533 47.619 5.47 0.00 43.02 2.83
787 801 3.057734 GACGACTTCGACCTTGACAAAT 58.942 45.455 5.47 0.00 43.02 2.32
792 817 5.220228 CGACTTCGACCTTGACAAATATGAC 60.220 44.000 0.00 0.00 43.02 3.06
795 820 3.932710 TCGACCTTGACAAATATGACTGC 59.067 43.478 0.00 0.00 0.00 4.40
798 823 3.441572 ACCTTGACAAATATGACTGCTGC 59.558 43.478 0.00 0.00 0.00 5.25
799 824 3.441222 CCTTGACAAATATGACTGCTGCA 59.559 43.478 0.88 0.88 0.00 4.41
809 834 4.219846 CTGCTGCATCGCGTCTGC 62.220 66.667 23.16 23.16 40.10 4.26
868 899 1.373497 CCACACGTCCACAGCTCTC 60.373 63.158 0.00 0.00 0.00 3.20
873 904 1.247419 ACGTCCACAGCTCTCCTCTG 61.247 60.000 0.00 0.00 37.56 3.35
904 942 1.667724 CATGCCTTCTTAAGAGCACCG 59.332 52.381 18.54 11.00 37.46 4.94
908 946 0.250513 CTTCTTAAGAGCACCGCCCT 59.749 55.000 5.12 0.00 0.00 5.19
931 969 4.200874 ACGATTGCACCGGGAAAATATAA 58.799 39.130 6.32 0.00 0.00 0.98
1062 1110 0.890996 CGGCAACCTGGAGCTTCTTT 60.891 55.000 0.00 0.00 0.00 2.52
1114 1162 3.538614 GCATAGGGCACGAGAGGA 58.461 61.111 0.00 0.00 43.97 3.71
1337 1388 4.636648 TCTCGAGTACCTCAATCTCAACTC 59.363 45.833 13.13 0.00 0.00 3.01
1338 1389 4.332828 TCGAGTACCTCAATCTCAACTCA 58.667 43.478 0.00 0.00 34.41 3.41
1366 1417 1.610967 TGTGGGCCTGATGGTCGTA 60.611 57.895 4.53 0.00 39.29 3.43
1386 1437 4.322801 CGTATTCCAGAGTTCTTGGGTTCT 60.323 45.833 0.00 0.00 0.00 3.01
1391 1442 5.621193 TCCAGAGTTCTTGGGTTCTTTAAG 58.379 41.667 0.00 0.00 0.00 1.85
1413 1464 3.876320 GGAACTTGAGGCATCTTGATCTC 59.124 47.826 0.00 0.00 0.00 2.75
1420 1471 4.151883 GAGGCATCTTGATCTCTCCTACT 58.848 47.826 0.00 0.00 0.00 2.57
1438 1675 5.706833 TCCTACTCGTGTATGTACTCAACAA 59.293 40.000 0.00 0.00 42.70 2.83
1461 1698 5.407407 ACATCTCATGGTTAACTCGTCTT 57.593 39.130 5.42 0.00 33.60 3.01
1489 1726 4.637091 TGTTGGTGCATCTTGATATGAGTG 59.363 41.667 0.00 0.00 0.00 3.51
1493 1730 3.812053 GTGCATCTTGATATGAGTGGGAC 59.188 47.826 0.00 0.00 0.00 4.46
1505 1742 1.280421 GAGTGGGACCAATCTCAGCTT 59.720 52.381 11.25 0.00 35.37 3.74
1507 1744 2.503356 AGTGGGACCAATCTCAGCTTAG 59.497 50.000 0.00 0.00 35.37 2.18
1642 1879 9.170734 CAAATCTTCAATACCTTGATCTCTCAA 57.829 33.333 0.00 0.00 40.95 3.02
2239 2628 7.338800 AGGGATACAAAGTTGCAATAGATTG 57.661 36.000 0.59 8.48 38.63 2.67
2304 2693 2.443887 CCAATGTTGGGAAACTGCAG 57.556 50.000 13.48 13.48 44.70 4.41
2314 2703 2.941720 GGGAAACTGCAGCAGATTAGAG 59.058 50.000 29.70 1.19 35.18 2.43
2318 2707 5.413309 AAACTGCAGCAGATTAGAGTACT 57.587 39.130 29.70 0.00 35.18 2.73
2356 2745 6.126652 ACAATCATCTTACTGGAGTTATGCCT 60.127 38.462 0.00 0.00 0.00 4.75
2371 2760 2.669240 CCTCCAGGACCGGGAAAC 59.331 66.667 14.79 0.00 37.39 2.78
2381 2770 0.320697 ACCGGGAAACTGCACTAGTC 59.679 55.000 6.32 0.00 39.18 2.59
2476 2865 9.362151 ACATTATTTGACCTTGACCTTTCTTAA 57.638 29.630 0.00 0.00 0.00 1.85
2502 2898 7.568128 ACAATCTTATATACCACCATGGCTA 57.432 36.000 13.04 0.00 42.67 3.93
2682 3078 5.413309 AGAACTTAGAACACCTGGATCTG 57.587 43.478 0.00 0.00 0.00 2.90
2730 3126 2.617532 GCCATCAGAGTTTGGAGCTTCT 60.618 50.000 0.00 0.00 34.81 2.85
2870 3266 3.685139 TCCTCGATGTTCTCAAAAGCT 57.315 42.857 0.00 0.00 0.00 3.74
3045 3441 3.608008 GCTTTCTGCAGCTAAGTCACAAC 60.608 47.826 21.75 7.53 42.31 3.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 2.309162 AGGTAGACACAGTAGCCAGAGA 59.691 50.000 0.00 0.00 0.00 3.10
25 26 1.075050 AGTGAAGGACCGAGGTAGACA 59.925 52.381 0.00 0.00 0.00 3.41
199 200 2.846918 GCAGAGACGTTGTCGCAC 59.153 61.111 3.62 0.00 41.18 5.34
401 402 2.433318 GCCAGTGACGCAGAGACC 60.433 66.667 0.00 0.00 0.00 3.85
620 621 9.880157 GATACAAGTAGTGTAATACCCTTTGAA 57.120 33.333 0.00 0.00 45.81 2.69
621 622 9.263446 AGATACAAGTAGTGTAATACCCTTTGA 57.737 33.333 0.00 0.00 45.81 2.69
644 645 9.331282 GTGTGTTGCTAGGAGATTTAATTAGAT 57.669 33.333 0.00 0.00 0.00 1.98
645 646 8.318412 TGTGTGTTGCTAGGAGATTTAATTAGA 58.682 33.333 0.00 0.00 0.00 2.10
646 647 8.391106 GTGTGTGTTGCTAGGAGATTTAATTAG 58.609 37.037 0.00 0.00 0.00 1.73
647 648 7.335924 GGTGTGTGTTGCTAGGAGATTTAATTA 59.664 37.037 0.00 0.00 0.00 1.40
648 649 6.151144 GGTGTGTGTTGCTAGGAGATTTAATT 59.849 38.462 0.00 0.00 0.00 1.40
649 650 5.648092 GGTGTGTGTTGCTAGGAGATTTAAT 59.352 40.000 0.00 0.00 0.00 1.40
650 651 5.001232 GGTGTGTGTTGCTAGGAGATTTAA 58.999 41.667 0.00 0.00 0.00 1.52
651 652 4.041075 TGGTGTGTGTTGCTAGGAGATTTA 59.959 41.667 0.00 0.00 0.00 1.40
652 653 3.181445 TGGTGTGTGTTGCTAGGAGATTT 60.181 43.478 0.00 0.00 0.00 2.17
688 689 4.621269 AGGTCACTGGACGTCCTT 57.379 55.556 33.39 18.82 45.28 3.36
777 791 3.441222 TGCAGCAGTCATATTTGTCAAGG 59.559 43.478 0.00 0.00 0.00 3.61
784 798 1.262417 CGCGATGCAGCAGTCATATTT 59.738 47.619 0.00 0.00 36.85 1.40
785 799 0.863799 CGCGATGCAGCAGTCATATT 59.136 50.000 0.00 0.00 36.85 1.28
786 800 0.249615 ACGCGATGCAGCAGTCATAT 60.250 50.000 15.93 0.00 36.85 1.78
787 801 0.871592 GACGCGATGCAGCAGTCATA 60.872 55.000 15.93 0.00 39.03 2.15
792 817 4.219846 GCAGACGCGATGCAGCAG 62.220 66.667 27.56 0.00 43.31 4.24
811 836 0.966875 TTCCATGGCAGATGTGTGGC 60.967 55.000 6.96 0.00 43.25 5.01
904 942 2.895372 CCGGTGCAATCGTAGGGC 60.895 66.667 9.38 0.00 0.00 5.19
908 946 2.116827 ATTTTCCCGGTGCAATCGTA 57.883 45.000 0.00 0.00 0.00 3.43
912 950 5.420739 AGTGTTTATATTTTCCCGGTGCAAT 59.579 36.000 0.00 0.00 0.00 3.56
931 969 3.433615 GCTTCGTGCTATGAAAGAGTGTT 59.566 43.478 0.00 0.00 38.95 3.32
1106 1154 2.733593 GCAACGCGTTCCTCTCGT 60.734 61.111 23.92 0.00 39.22 4.18
1114 1162 3.660111 GAAGGCCAGCAACGCGTT 61.660 61.111 20.79 20.79 37.06 4.84
1337 1388 2.978010 GCCCACACAGTCCCGTTG 60.978 66.667 0.00 0.00 0.00 4.10
1338 1389 4.265056 GGCCCACACAGTCCCGTT 62.265 66.667 0.00 0.00 0.00 4.44
1366 1417 4.731313 AAGAACCCAAGAACTCTGGAAT 57.269 40.909 0.00 0.00 0.00 3.01
1386 1437 5.630121 TCAAGATGCCTCAAGTTCCTTAAA 58.370 37.500 0.00 0.00 0.00 1.52
1391 1442 3.876320 GAGATCAAGATGCCTCAAGTTCC 59.124 47.826 0.00 0.00 0.00 3.62
1413 1464 5.353400 TGTTGAGTACATACACGAGTAGGAG 59.647 44.000 11.56 0.70 35.65 3.69
1420 1471 6.452242 AGATGTTTGTTGAGTACATACACGA 58.548 36.000 0.00 0.00 46.64 4.35
1438 1675 5.407407 AGACGAGTTAACCATGAGATGTT 57.593 39.130 0.88 0.00 0.00 2.71
1461 1698 1.699083 TCAAGATGCACCAACAGAGGA 59.301 47.619 0.00 0.00 0.00 3.71
1489 1726 3.274288 CAACTAAGCTGAGATTGGTCCC 58.726 50.000 4.63 0.00 0.00 4.46
1493 1730 1.667724 CGGCAACTAAGCTGAGATTGG 59.332 52.381 4.63 0.00 43.63 3.16
1564 1801 0.795085 CTTGAAAGCGAGCACTCAGG 59.205 55.000 0.00 0.00 0.00 3.86
1941 2178 3.829948 CTGCAATCTGTTGGATGAACAC 58.170 45.455 0.00 0.00 39.78 3.32
2005 2242 4.028993 TGGTTAAGTTCCCCAATCTGTC 57.971 45.455 0.00 0.00 0.00 3.51
2239 2628 2.294449 AAGAAAGGGAAAGGTCCTGC 57.706 50.000 0.00 0.00 44.28 4.85
2250 2639 7.054124 TCCAGTAATGCTATTGTAAGAAAGGG 58.946 38.462 0.00 0.00 0.00 3.95
2304 2693 8.940768 AGAAAGATCAAAGTACTCTAATCTGC 57.059 34.615 12.16 9.02 0.00 4.26
2335 2724 5.537300 GAGGCATAACTCCAGTAAGATGA 57.463 43.478 0.00 0.00 0.00 2.92
2356 2745 2.890766 GCAGTTTCCCGGTCCTGGA 61.891 63.158 0.00 0.00 0.00 3.86
2364 2753 1.714794 CAGACTAGTGCAGTTTCCCG 58.285 55.000 0.00 0.00 37.72 5.14
2381 2770 8.420189 GTTGTTCGAAAGAGAAAAATATTGCAG 58.580 33.333 0.00 0.00 43.69 4.41
2456 2845 7.469537 TGTTTTAAGAAAGGTCAAGGTCAAA 57.530 32.000 0.00 0.00 0.00 2.69
2457 2846 7.469537 TTGTTTTAAGAAAGGTCAAGGTCAA 57.530 32.000 0.00 0.00 0.00 3.18
2476 2865 7.297614 AGCCATGGTGGTATATAAGATTGTTT 58.702 34.615 14.67 0.00 40.46 2.83
2565 2961 1.470632 CCGAGCAGACCAATCTCAGAC 60.471 57.143 0.00 0.00 30.42 3.51
2682 3078 3.057946 GCCCTGAGAAAGAATTGTGTGAC 60.058 47.826 0.00 0.00 0.00 3.67
2763 3159 4.314522 TTCAGGAATATGCCCACTGAAA 57.685 40.909 0.00 0.00 43.01 2.69
2799 3195 4.993705 ATCCAAGACAACTAGGTTCCAA 57.006 40.909 0.00 0.00 0.00 3.53
2870 3266 9.990360 GATTTAAAATCAGGAAAACCAGGTTAA 57.010 29.630 4.87 0.00 0.00 2.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.