AutoCloner

Multiple sequence alignment - TraesCS6B01G019000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS6B01G019000	chr6B	100.000	2954	0	0	1	2954	11591791	11594744	0.000000e+00	5456.0
1	TraesCS6B01G019000	chr6B	85.383	732	85	14	773	1489	11792060	11792784	0.000000e+00	739.0
2	TraesCS6B01G019000	chr6B	98.980	196	2	0	2164	2359	11598992	11599187	4.680000e-93	351.0
3	TraesCS6B01G019000	chr6B	90.094	212	21	0	1577	1788	11792785	11792996	2.900000e-70	276.0
4	TraesCS6B01G019000	chr6D	88.731	1553	140	26	23	1548	6350561	6352105	0.000000e+00	1866.0
5	TraesCS6B01G019000	chr6D	98.104	791	10	3	2165	2954	445191037	445190251	0.000000e+00	1373.0
6	TraesCS6B01G019000	chr6D	87.723	896	74	15	23	902	6369342	6370217	0.000000e+00	1013.0
7	TraesCS6B01G019000	chr6D	83.159	1051	119	34	759	1788	6424904	6425917	0.000000e+00	907.0
8	TraesCS6B01G019000	chr6D	87.855	774	73	14	1021	1788	6496250	6497008	0.000000e+00	889.0
9	TraesCS6B01G019000	chr6D	84.547	906	109	21	897	1788	6441657	6442545	0.000000e+00	869.0
10	TraesCS6B01G019000	chr6D	87.110	737	76	2	1046	1779	6370241	6370961	0.000000e+00	817.0
11	TraesCS6B01G019000	chr6D	79.812	743	114	20	1061	1788	7032265	7032986	2.630000e-140	508.0
12	TraesCS6B01G019000	chr6D	90.155	386	33	3	1782	2162	6371194	6371579	5.690000e-137	497.0
13	TraesCS6B01G019000	chr6D	91.608	286	24	0	1503	1788	6352132	6352417	2.130000e-106	396.0
14	TraesCS6B01G019000	chr6D	97.436	195	4	1	2164	2358	445186003	445185810	6.100000e-87	331.0
15	TraesCS6B01G019000	chr6D	82.713	376	49	9	1786	2146	6497313	6497687	1.320000e-83	320.0
16	TraesCS6B01G019000	chr6D	88.931	262	24	3	1906	2162	6352914	6353175	4.750000e-83	318.0
17	TraesCS6B01G019000	chr6D	80.385	260	46	3	1890	2144	6426440	6426699	3.000000e-45	193.0
18	TraesCS6B01G019000	chr6D	82.791	215	28	7	1787	1994	6426193	6426405	1.810000e-42	183.0
19	TraesCS6B01G019000	chr6A	92.844	1076	53	7	737	1788	5900399	5901474	0.000000e+00	1539.0
20	TraesCS6B01G019000	chr6A	82.931	1078	121	35	737	1788	5939244	5940284	0.000000e+00	913.0
21	TraesCS6B01G019000	chr6A	92.088	455	29	6	28	477	5882035	5882487	4.150000e-178	634.0
22	TraesCS6B01G019000	chr6A	86.403	581	70	6	1064	1641	5916509	5917083	6.950000e-176	627.0
23	TraesCS6B01G019000	chr6A	91.121	214	18	1	515	728	5882485	5882697	3.730000e-74	289.0
24	TraesCS6B01G019000	chr6A	85.606	264	29	7	1906	2162	5917642	5917903	4.850000e-68	268.0
25	TraesCS6B01G019000	chr6A	79.947	379	58	11	1782	2144	5901745	5902121	2.260000e-66	263.0
26	TraesCS6B01G019000	chr6A	80.385	260	46	3	1890	2144	5940807	5941066	3.000000e-45	193.0
27	TraesCS6B01G019000	chr6A	83.256	215	27	7	1787	1994	5940560	5940772	3.890000e-44	189.0
28	TraesCS6B01G019000	chr2A	99.368	791	5	0	2164	2954	32937598	32936808	0.000000e+00	1434.0
29	TraesCS6B01G019000	chr2A	98.485	198	3	0	2164	2361	32932566	32932369	1.680000e-92	350.0
30	TraesCS6B01G019000	chr4A	98.731	788	9	1	2165	2951	605013420	605014207	0.000000e+00	1399.0
31	TraesCS6B01G019000	chr4A	97.475	198	4	1	2164	2360	605018458	605018655	1.310000e-88	337.0
32	TraesCS6B01G019000	chr4A	88.614	202	21	2	2749	2949	546214283	546214483	8.180000e-61	244.0
33	TraesCS6B01G019000	chr1D	97.243	798	10	4	2165	2954	460546175	460545382	0.000000e+00	1341.0
34	TraesCS6B01G019000	chr1D	94.130	477	14	3	2165	2640	3245671	3246134	0.000000e+00	713.0
35	TraesCS6B01G019000	chr1D	97.835	231	5	0	2724	2954	3246133	3246363	1.650000e-107	399.0
36	TraesCS6B01G019000	chr3A	98.993	298	3	0	2657	2954	686522163	686521866	4.330000e-148	534.0
37	TraesCS6B01G019000	chr3A	94.848	330	16	1	2165	2494	686522491	686522163	5.650000e-142	514.0
38	TraesCS6B01G019000	chrUn	89.372	207	20	2	2749	2954	103463954	103463749	2.920000e-65	259.0
39	TraesCS6B01G019000	chr1A	89.372	207	20	2	2749	2954	1820649	1820444	2.920000e-65	259.0
40	TraesCS6B01G019000	chr1A	76.235	425	92	8	28	448	130153819	130154238	1.780000e-52	217.0
41	TraesCS6B01G019000	chr3B	79.026	267	46	5	166	430	786869727	786869469	1.090000e-39	174.0
42	TraesCS6B01G019000	chr3D	81.884	138	23	2	303	439	113813593	113813729	6.690000e-22	115.0
43	TraesCS6B01G019000	chr5B	77.857	140	30	1	306	445	509187893	509188031	5.250000e-13	86.1
44	TraesCS6B01G019000	chr2D	72.137	262	62	11	196	452	99706447	99706192	5.280000e-08	69.4
45	TraesCS6B01G019000	chr5D	81.579	76	11	3	379	452	102608320	102608246	3.180000e-05	60.2

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS6B01G019000	chr6B	11591791	11594744	2953	False	5456.000000	5456	100.000000	1	2954	1	chr6B.!!$F1	2953
1	TraesCS6B01G019000	chr6B	11792060	11792996	936	False	507.500000	739	87.738500	773	1788	2	chr6B.!!$F3	1015
2	TraesCS6B01G019000	chr6D	445190251	445191037	786	True	1373.000000	1373	98.104000	2165	2954	1	chr6D.!!$R2	789
3	TraesCS6B01G019000	chr6D	6441657	6442545	888	False	869.000000	869	84.547000	897	1788	1	chr6D.!!$F1	891
4	TraesCS6B01G019000	chr6D	6350561	6353175	2614	False	860.000000	1866	89.756667	23	2162	3	chr6D.!!$F3	2139
5	TraesCS6B01G019000	chr6D	6369342	6371579	2237	False	775.666667	1013	88.329333	23	2162	3	chr6D.!!$F4	2139
6	TraesCS6B01G019000	chr6D	6496250	6497687	1437	False	604.500000	889	85.284000	1021	2146	2	chr6D.!!$F6	1125
7	TraesCS6B01G019000	chr6D	7032265	7032986	721	False	508.000000	508	79.812000	1061	1788	1	chr6D.!!$F2	727
8	TraesCS6B01G019000	chr6D	6424904	6426699	1795	False	427.666667	907	82.111667	759	2144	3	chr6D.!!$F5	1385
9	TraesCS6B01G019000	chr6A	5900399	5902121	1722	False	901.000000	1539	86.395500	737	2144	2	chr6A.!!$F2	1407
10	TraesCS6B01G019000	chr6A	5882035	5882697	662	False	461.500000	634	91.604500	28	728	2	chr6A.!!$F1	700
11	TraesCS6B01G019000	chr6A	5916509	5917903	1394	False	447.500000	627	86.004500	1064	2162	2	chr6A.!!$F3	1098
12	TraesCS6B01G019000	chr6A	5939244	5941066	1822	False	431.666667	913	82.190667	737	2144	3	chr6A.!!$F4	1407
13	TraesCS6B01G019000	chr2A	32936808	32937598	790	True	1434.000000	1434	99.368000	2164	2954	1	chr2A.!!$R2	790
14	TraesCS6B01G019000	chr4A	605013420	605014207	787	False	1399.000000	1399	98.731000	2165	2951	1	chr4A.!!$F2	786
15	TraesCS6B01G019000	chr1D	460545382	460546175	793	True	1341.000000	1341	97.243000	2165	2954	1	chr1D.!!$R1	789
16	TraesCS6B01G019000	chr1D	3245671	3246363	692	False	556.000000	713	95.982500	2165	2954	2	chr1D.!!$F1	789
17	TraesCS6B01G019000	chr3A	686521866	686522491	625	True	524.000000	534	96.920500	2165	2954	2	chr3A.!!$R1	789

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
966	1040	1.206745	CGTACGTGCCTATGCCTTCG	61.207	60.0	7.22	0.0	36.33	3.79	F
1332	1435	0.813210	GCTGGATCTTGGCGGAAGAG	60.813	60.0	3.50	0.0	44.14	2.85	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1855	2364	0.034896	AGTTGGTCAAGTGCCCTACG	59.965	55.0	0.00	0.0	32.65	3.51	R
2301	3035	0.108585	ACTCCATGGTTCGTGTGCTT	59.891	50.0	12.58	0.0	0.00	3.91	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
25	26	2.423892	TCTCTGATGAAGGTGTACGAGC	59.576	50.000	0.00	0.00	0.00	5.03
57	58	5.659463	CGGCTCAATTTAAATTCATCCCAA	58.341	37.500	10.53	0.00	0.00	4.12
61	62	7.012610	GGCTCAATTTAAATTCATCCCAATTGG	59.987	37.037	18.21	18.21	34.02	3.16
108	111	5.625426	GCGATGGCTATGAGAGATGGATTAA	60.625	44.000	0.00	0.00	35.83	1.40
129	132	7.833285	TTAACCCTTGCTTATTCTTTTGAGT	57.167	32.000	0.00	0.00	0.00	3.41
169	173	5.221087	CGGAATCAGACTCCTTAGAGGTTAC	60.221	48.000	0.00	0.00	45.11	2.50
178	182	8.048514	AGACTCCTTAGAGGTTACTAACTACTG	58.951	40.741	0.00	0.00	45.11	2.74
254	258	6.428159	GTGTGTGGATATTAGTTCCATGATCC	59.572	42.308	0.00	0.00	44.75	3.36
345	349	8.753497	ATTATTGTAAGAAGGCTTCCTTTAGG	57.247	34.615	23.09	0.00	44.82	2.69
381	385	5.607119	CACATGGTTCTGTGGTTAGTAAC	57.393	43.478	4.32	4.32	42.26	2.50
433	437	9.393512	GATCTTAATAAAGCTAGCCATGATGAT	57.606	33.333	12.13	8.67	32.36	2.45
490	497	3.704800	ACTAGGCTCCTTGAGGAAAAC	57.295	47.619	0.76	0.00	44.91	2.43
492	499	1.450360	AGGCTCCTTGAGGAAAACCT	58.550	50.000	9.15	9.15	44.91	3.50
547	554	2.168313	ACGACATCCACACATGCATCTA	59.832	45.455	0.00	0.00	0.00	1.98
558	565	5.049612	CACACATGCATCTATCATCAAGTCC	60.050	44.000	0.00	0.00	0.00	3.85
630	637	4.809673	CAAGTTTATGTCAGCTTTTCCCC	58.190	43.478	0.00	0.00	0.00	4.81
631	638	3.431415	AGTTTATGTCAGCTTTTCCCCC	58.569	45.455	0.00	0.00	0.00	5.40
678	687	4.891756	AGTTACTAGCTACTTGGCCGAATA	59.108	41.667	0.00	0.00	0.00	1.75
688	697	2.171725	GGCCGAATACAGTCCGCAC	61.172	63.158	0.00	0.00	0.00	5.34
809	856	4.511246	AGGCCATGGCATCCACGG	62.511	66.667	36.56	2.85	40.24	4.94
929	992	2.119495	AGTACCTCATCCATCCACACC	58.881	52.381	0.00	0.00	0.00	4.16
966	1040	1.206745	CGTACGTGCCTATGCCTTCG	61.207	60.000	7.22	0.00	36.33	3.79
1004	1079	1.470890	ACGTTGCACCGGGAAAATATG	59.529	47.619	8.96	0.00	0.00	1.78
1015	1094	4.493547	CGGGAAAATATGCACACACATTT	58.506	39.130	0.00	0.00	0.00	2.32
1019	1098	7.041107	GGGAAAATATGCACACACATTTGTAT	58.959	34.615	0.00	0.00	33.30	2.29
1029	1108	5.620822	CACACACATTTGTATCACGAAACAG	59.379	40.000	0.00	0.00	33.30	3.16
1058	1143	1.145571	ACTACCACCACCACACCATT	58.854	50.000	0.00	0.00	0.00	3.16
1138	1235	1.139947	GGAGCTTCTTCCTCGTCGG	59.860	63.158	0.00	0.00	34.27	4.79
1319	1422	1.202580	GGCTATGTCGTCAAGCTGGAT	60.203	52.381	0.00	0.00	36.48	3.41
1332	1435	0.813210	GCTGGATCTTGGCGGAAGAG	60.813	60.000	3.50	0.00	44.14	2.85
1632	1834	2.191128	ACCTCTGTTGGTGCATCTTC	57.809	50.000	0.00	0.00	39.17	2.87
1710	1912	5.319453	AGATTCCATCTTTGAAGTTGCTCA	58.681	37.500	0.00	0.00	35.76	4.26
1745	1947	1.065401	TCGCTTTCAAGTGCAAACCAG	59.935	47.619	0.00	0.00	36.50	4.00
1808	2317	3.659786	TGTTCGTCCAACAGATTACAGG	58.340	45.455	0.00	0.00	40.29	4.00
1844	2353	4.937015	GCAGCAACAATATGGTTGGAATTT	59.063	37.500	21.87	0.00	46.36	1.82
1855	2364	3.607422	GTTGGAATTTTGCCAAACAGC	57.393	42.857	0.00	0.00	46.18	4.40
1856	2365	1.863267	TGGAATTTTGCCAAACAGCG	58.137	45.000	0.00	0.00	34.65	5.18
1858	2367	2.362397	TGGAATTTTGCCAAACAGCGTA	59.638	40.909	0.00	0.00	34.65	4.42
1915	2424	8.856153	TTTCTTACAATAACATTACTGGAGCA	57.144	30.769	0.00	0.00	0.00	4.26
1947	2523	3.379688	GGCATTGGGAATCTCTCTTGTTC	59.620	47.826	0.00	0.00	0.00	3.18
1949	2525	4.460382	GCATTGGGAATCTCTCTTGTTCAA	59.540	41.667	0.00	0.00	0.00	2.69
1952	2528	7.680588	GCATTGGGAATCTCTCTTGTTCAATAC	60.681	40.741	0.00	0.00	0.00	1.89
1975	2700	9.965902	ATACAACTTGATCTTCAACCTTCTTAT	57.034	29.630	0.00	0.00	32.21	1.73
2007	2732	0.824109	GCTAGGGTTGGGAAATTGCC	59.176	55.000	0.00	0.00	0.00	4.52
2013	2747	4.866532	AGGGTTGGGAAATTGCCCTTCTA	61.867	47.826	22.99	0.00	46.80	2.10
2016	2750	8.251614	AGGGTTGGGAAATTGCCCTTCTATTA	62.252	42.308	22.99	0.00	46.80	0.98
2082	2816	7.650104	GGATAGAGAGTTGCACTAGATTACAAC	59.350	40.741	0.00	5.38	42.08	3.32
2162	2896	8.459911	ACTGCACCAAATTATATTACCTTACC	57.540	34.615	0.00	0.00	0.00	2.85
2273	3007	4.642466	AAGGAAAGGAAACGGAGAGAAT	57.358	40.909	0.00	0.00	0.00	2.40
2301	3035	4.523173	CAGTACGCTCCTATCCAAATCCTA	59.477	45.833	0.00	0.00	0.00	2.94
2414	3148	2.965147	GCGACATTTGACGGCAGCA	61.965	57.895	0.00	0.00	34.07	4.41

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
0	1	5.849510	TCGTACACCTTCATCAGAGAAAAA	58.150	37.500	0.00	0.00	0.00	1.94
1	2	5.462530	TCGTACACCTTCATCAGAGAAAA	57.537	39.130	0.00	0.00	0.00	2.29
2	3	4.618460	GCTCGTACACCTTCATCAGAGAAA	60.618	45.833	0.00	0.00	0.00	2.52
3	4	3.119459	GCTCGTACACCTTCATCAGAGAA	60.119	47.826	0.00	0.00	0.00	2.87
4	5	2.423892	GCTCGTACACCTTCATCAGAGA	59.576	50.000	0.00	0.00	0.00	3.10
5	6	2.792890	CGCTCGTACACCTTCATCAGAG	60.793	54.545	0.00	0.00	0.00	3.35
6	7	1.132453	CGCTCGTACACCTTCATCAGA	59.868	52.381	0.00	0.00	0.00	3.27
7	8	1.135373	ACGCTCGTACACCTTCATCAG	60.135	52.381	0.00	0.00	0.00	2.90
8	9	0.885879	ACGCTCGTACACCTTCATCA	59.114	50.000	0.00	0.00	0.00	3.07
9	10	1.992170	AACGCTCGTACACCTTCATC	58.008	50.000	0.00	0.00	0.00	2.92
10	11	2.029290	AGAAACGCTCGTACACCTTCAT	60.029	45.455	0.00	0.00	0.00	2.57
11	12	1.338973	AGAAACGCTCGTACACCTTCA	59.661	47.619	0.00	0.00	0.00	3.02
12	13	1.719780	CAGAAACGCTCGTACACCTTC	59.280	52.381	0.00	0.00	0.00	3.46
13	14	1.604693	CCAGAAACGCTCGTACACCTT	60.605	52.381	0.00	0.00	0.00	3.50
14	15	0.038526	CCAGAAACGCTCGTACACCT	60.039	55.000	0.00	0.00	0.00	4.00
15	16	1.623973	GCCAGAAACGCTCGTACACC	61.624	60.000	0.00	0.00	0.00	4.16
16	17	1.779683	GCCAGAAACGCTCGTACAC	59.220	57.895	0.00	0.00	0.00	2.90
17	18	1.731613	CGCCAGAAACGCTCGTACA	60.732	57.895	0.00	0.00	0.00	2.90
18	19	2.442188	CCGCCAGAAACGCTCGTAC	61.442	63.158	0.00	0.00	0.00	3.67
19	20	2.126228	CCGCCAGAAACGCTCGTA	60.126	61.111	0.00	0.00	0.00	3.43
25	26	0.240945	AAATTGAGCCGCCAGAAACG	59.759	50.000	0.00	0.00	0.00	3.60
57	58	2.848694	AGGTGATCACATCTGTCCCAAT	59.151	45.455	26.47	0.00	35.99	3.16
108	111	5.833131	TGAACTCAAAAGAATAAGCAAGGGT	59.167	36.000	0.00	0.00	0.00	4.34
129	132	1.218047	CCGCCTCCACTCGATTGAA	59.782	57.895	4.04	0.00	0.00	2.69
178	182	2.017049	ACCATCTTGTTTGCCTATCGC	58.983	47.619	0.00	0.00	38.31	4.58
254	258	8.179615	GGTAACAATACTTAAAATGACCTTCCG	58.820	37.037	0.00	0.00	32.36	4.30
334	338	4.526970	TCATCCAATCACCTAAAGGAAGC	58.473	43.478	2.23	0.00	38.94	3.86
449	456	5.859495	AGTTCCAAGAGAGAAAATCGACTT	58.141	37.500	0.00	0.00	32.51	3.01
490	497	1.090052	GGCGTGGCTGCTACTAAAGG	61.090	60.000	14.29	0.00	34.52	3.11
492	499	0.672401	GTGGCGTGGCTGCTACTAAA	60.672	55.000	14.29	0.00	42.41	1.85
630	637	0.900182	GGAACTGGCCAAAAGAGGGG	60.900	60.000	7.01	0.00	0.00	4.79
631	638	0.113190	AGGAACTGGCCAAAAGAGGG	59.887	55.000	7.01	0.00	37.18	4.30
632	639	3.753787	AGGAACTGGCCAAAAGAGG	57.246	52.632	7.01	0.00	37.18	3.69
678	687	5.593679	AATAATACTAGTGTGCGGACTGT	57.406	39.130	8.99	4.87	0.00	3.55
809	856	1.168714	GACTCATTTGTGGGGTGCTC	58.831	55.000	0.00	0.00	0.00	4.26
929	992	1.781025	CGTAGAGAGGAGCTGCGGAG	61.781	65.000	0.00	0.00	37.74	4.63
966	1040	1.535437	CGTCGGGTGGTGCTCTTATAC	60.535	57.143	0.00	0.00	0.00	1.47
1004	1079	3.804518	TCGTGATACAAATGTGTGTGC	57.195	42.857	0.00	0.00	38.82	4.57
1015	1094	2.094442	TGATCGGCTGTTTCGTGATACA	60.094	45.455	0.00	0.00	0.00	2.29
1019	1098	0.669318	GGTGATCGGCTGTTTCGTGA	60.669	55.000	0.00	0.00	0.00	4.35
1029	1108	1.153429	GGTGGTAGTGGTGATCGGC	60.153	63.158	0.00	0.00	0.00	5.54
1058	1143	4.854924	CGATCCATGGCGGTGGCA	62.855	66.667	6.96	0.00	43.52	4.92
1167	1264	3.902086	GTCCCTCTCGCGCCCTAC	61.902	72.222	0.00	0.00	0.00	3.18
1190	1287	4.828409	CCTTGCTTGAAGGCCAGA	57.172	55.556	5.01	0.00	45.17	3.86
1302	1405	3.430790	CCAAGATCCAGCTTGACGACATA	60.431	47.826	6.14	0.00	46.31	2.29
1319	1422	3.369471	CCAAATAGTCTCTTCCGCCAAGA	60.369	47.826	0.00	0.00	38.95	3.02
1520	1698	3.826729	GGTATTCCAGCTTTGACAGGTTT	59.173	43.478	0.00	0.00	0.00	3.27
1710	1912	0.965439	AGCGAGCACTCAGAAAGACT	59.035	50.000	0.00	0.00	0.00	3.24
1745	1947	1.697982	AGGTTTAGGTGTGTGAGGGAC	59.302	52.381	0.00	0.00	0.00	4.46
1844	2353	2.265182	GCCCTACGCTGTTTGGCAA	61.265	57.895	0.00	0.00	41.76	4.52
1855	2364	0.034896	AGTTGGTCAAGTGCCCTACG	59.965	55.000	0.00	0.00	32.65	3.51
1856	2365	2.271944	AAGTTGGTCAAGTGCCCTAC	57.728	50.000	0.00	0.00	0.00	3.18
1858	2367	2.644798	AGATAAGTTGGTCAAGTGCCCT	59.355	45.455	0.00	0.00	0.00	5.19
1887	2396	8.276252	TCCAGTAATGTTATTGTAAGAAAGGC	57.724	34.615	0.00	0.00	0.00	4.35
1915	2424	1.136828	TCCCAATGCCTAGCGGTATT	58.863	50.000	0.00	0.00	45.11	1.89
1947	2523	8.103948	AGAAGGTTGAAGATCAAGTTGTATTG	57.896	34.615	2.11	0.00	37.00	1.90
1949	2525	9.965902	ATAAGAAGGTTGAAGATCAAGTTGTAT	57.034	29.630	2.11	0.00	37.00	2.29
1952	2528	8.025445	CCAATAAGAAGGTTGAAGATCAAGTTG	58.975	37.037	0.00	0.00	37.00	3.16
1975	2700	1.133262	ACCCTAGCGGTATAGCTCCAA	60.133	52.381	0.00	0.00	45.97	3.53
2016	2750	7.037586	TCCACTAAGGTTGTTATTGGAGAGATT	60.038	37.037	0.94	0.00	39.02	2.40
2033	2767	5.539193	CCCTAGTTGTATAGGTCCACTAAGG	59.461	48.000	0.00	0.00	40.77	2.69
2082	2816	5.705441	TGCTATTGTAAGAAAGGTCAAGGTG	59.295	40.000	0.00	0.00	0.00	4.00
2273	3007	2.092049	TGGATAGGAGCGTACTGGAGAA	60.092	50.000	0.00	0.00	0.00	2.87
2301	3035	0.108585	ACTCCATGGTTCGTGTGCTT	59.891	50.000	12.58	0.00	0.00	3.91
2414	3148	3.195610	TCAGATCCGCTGTACTTGAACAT	59.804	43.478	0.00	0.00	45.14	2.71

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.