Multiple sequence alignment - TraesCS6B01G018600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G018600 chr6B 100.000 2849 0 0 1682 4530 11542022 11539174 0.000000e+00 5262.0
1 TraesCS6B01G018600 chr6B 100.000 975 0 0 616 1590 11543088 11542114 0.000000e+00 1801.0
2 TraesCS6B01G018600 chr6B 100.000 492 0 0 1 492 11543703 11543212 0.000000e+00 909.0
3 TraesCS6B01G018600 chr6B 82.051 117 19 2 2706 2821 12549168 12549283 1.040000e-16 99.0
4 TraesCS6B01G018600 chr6A 89.480 1711 136 25 2840 4530 5606359 5604673 0.000000e+00 2122.0
5 TraesCS6B01G018600 chr6A 90.007 1481 113 15 1963 3413 5690287 5688812 0.000000e+00 1882.0
6 TraesCS6B01G018600 chr6A 87.845 1341 91 20 1682 2954 5792908 5791572 0.000000e+00 1507.0
7 TraesCS6B01G018600 chr6A 90.977 942 62 8 1682 2603 5607296 5606358 0.000000e+00 1247.0
8 TraesCS6B01G018600 chr6A 93.814 582 34 2 3411 3992 5785889 5785310 0.000000e+00 874.0
9 TraesCS6B01G018600 chr6A 93.299 582 36 3 3411 3992 5683260 5682682 0.000000e+00 856.0
10 TraesCS6B01G018600 chr6A 90.055 543 53 1 3988 4530 5673912 5673371 0.000000e+00 702.0
11 TraesCS6B01G018600 chr6A 89.687 543 55 1 3988 4530 5776540 5775999 0.000000e+00 691.0
12 TraesCS6B01G018600 chr6A 90.909 297 15 7 1682 1966 5695770 5695474 5.500000e-104 388.0
13 TraesCS6B01G018600 chr6A 90.845 284 26 0 3130 3413 5791561 5791278 9.200000e-102 381.0
14 TraesCS6B01G018600 chr6A 82.000 100 17 1 2722 2821 6395202 6395300 2.900000e-12 84.2
15 TraesCS6B01G018600 chr6D 89.503 1629 106 29 2935 4530 6277297 6275701 0.000000e+00 2001.0
16 TraesCS6B01G018600 chr6D 89.605 683 45 10 2263 2925 6306056 6305380 0.000000e+00 845.0
17 TraesCS6B01G018600 chr6D 91.494 435 22 6 1682 2101 6306492 6306058 6.530000e-163 584.0
18 TraesCS6B01G018600 chr1B 99.897 975 1 0 616 1590 1957475 1958449 0.000000e+00 1796.0
19 TraesCS6B01G018600 chr5B 99.385 975 6 0 616 1590 399181705 399180731 0.000000e+00 1768.0
20 TraesCS6B01G018600 chr5B 90.217 276 23 4 1313 1586 327523506 327523233 1.550000e-94 357.0
21 TraesCS6B01G018600 chr3B 99.282 975 7 0 616 1590 104986086 104987060 0.000000e+00 1762.0
22 TraesCS6B01G018600 chr3B 100.000 653 0 0 616 1268 830776725 830776073 0.000000e+00 1206.0
23 TraesCS6B01G018600 chr3B 99.631 271 1 0 1320 1590 830776028 830775758 3.150000e-136 496.0
24 TraesCS6B01G018600 chr2B 91.166 815 67 4 779 1589 771518738 771519551 0.000000e+00 1101.0
25 TraesCS6B01G018600 chr2B 85.714 770 86 11 616 1379 38220862 38220111 0.000000e+00 791.0
26 TraesCS6B01G018600 chr2B 83.041 171 17 1 1 171 87927001 87926843 1.310000e-30 145.0
27 TraesCS6B01G018600 chr2B 77.301 163 27 9 15 172 738174144 738174301 2.240000e-13 87.9
28 TraesCS6B01G018600 chr2B 89.552 67 5 2 231 297 74336209 74336145 2.900000e-12 84.2
29 TraesCS6B01G018600 chr2B 84.211 57 8 1 173 229 87926811 87926756 2.000000e-03 54.7
30 TraesCS6B01G018600 chr7D 79.956 454 60 14 1062 1510 384450634 384451061 5.690000e-79 305.0
31 TraesCS6B01G018600 chr5D 84.393 173 14 2 1 173 416436453 416436294 1.690000e-34 158.0
32 TraesCS6B01G018600 chr5D 87.500 80 10 0 93 172 22046088 22046167 4.830000e-15 93.5
33 TraesCS6B01G018600 chrUn 82.456 114 18 2 2709 2821 369446957 369446845 1.040000e-16 99.0
34 TraesCS6B01G018600 chrUn 80.342 117 21 2 2706 2821 76108557 76108672 2.240000e-13 87.9
35 TraesCS6B01G018600 chrUn 80.342 117 21 2 2706 2821 350828822 350828937 2.240000e-13 87.9
36 TraesCS6B01G018600 chrUn 97.059 34 1 0 2788 2821 380783404 380783437 1.760000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G018600 chr6B 11539174 11543703 4529 True 2657.333333 5262 100.0000 1 4530 3 chr6B.!!$R1 4529
1 TraesCS6B01G018600 chr6A 5688812 5690287 1475 True 1882.000000 1882 90.0070 1963 3413 1 chr6A.!!$R3 1450
2 TraesCS6B01G018600 chr6A 5604673 5607296 2623 True 1684.500000 2122 90.2285 1682 4530 2 chr6A.!!$R7 2848
3 TraesCS6B01G018600 chr6A 5791278 5792908 1630 True 944.000000 1507 89.3450 1682 3413 2 chr6A.!!$R8 1731
4 TraesCS6B01G018600 chr6A 5785310 5785889 579 True 874.000000 874 93.8140 3411 3992 1 chr6A.!!$R6 581
5 TraesCS6B01G018600 chr6A 5682682 5683260 578 True 856.000000 856 93.2990 3411 3992 1 chr6A.!!$R2 581
6 TraesCS6B01G018600 chr6A 5673371 5673912 541 True 702.000000 702 90.0550 3988 4530 1 chr6A.!!$R1 542
7 TraesCS6B01G018600 chr6A 5775999 5776540 541 True 691.000000 691 89.6870 3988 4530 1 chr6A.!!$R5 542
8 TraesCS6B01G018600 chr6D 6275701 6277297 1596 True 2001.000000 2001 89.5030 2935 4530 1 chr6D.!!$R1 1595
9 TraesCS6B01G018600 chr6D 6305380 6306492 1112 True 714.500000 845 90.5495 1682 2925 2 chr6D.!!$R2 1243
10 TraesCS6B01G018600 chr1B 1957475 1958449 974 False 1796.000000 1796 99.8970 616 1590 1 chr1B.!!$F1 974
11 TraesCS6B01G018600 chr5B 399180731 399181705 974 True 1768.000000 1768 99.3850 616 1590 1 chr5B.!!$R2 974
12 TraesCS6B01G018600 chr3B 104986086 104987060 974 False 1762.000000 1762 99.2820 616 1590 1 chr3B.!!$F1 974
13 TraesCS6B01G018600 chr3B 830775758 830776725 967 True 851.000000 1206 99.8155 616 1590 2 chr3B.!!$R1 974
14 TraesCS6B01G018600 chr2B 771518738 771519551 813 False 1101.000000 1101 91.1660 779 1589 1 chr2B.!!$F2 810
15 TraesCS6B01G018600 chr2B 38220111 38220862 751 True 791.000000 791 85.7140 616 1379 1 chr2B.!!$R1 763

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
38 39 0.036388 ATCCGTGATCGTTTGCTGGT 60.036 50.0 0.00 0.0 35.01 4.00 F
48 49 0.037975 GTTTGCTGGTGGGCTCAATG 60.038 55.0 0.00 0.0 0.00 2.82 F
286 287 0.039035 TAGTCCCAATGGCCACAACC 59.961 55.0 8.16 0.0 0.00 3.77 F
326 327 0.321564 CAGAATGCCCCACGTGAAGA 60.322 55.0 19.30 0.0 0.00 2.87 F
2228 2287 0.237761 AGAGGACTTTCGACGACGTG 59.762 55.0 4.58 0.0 40.69 4.49 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2015 2063 0.179113 GGCATGTTATGGGCGGTTTG 60.179 55.000 0.00 0.00 0.00 2.93 R
2051 2102 4.767255 GTCCCACTGGCTGCGGAG 62.767 72.222 0.00 0.00 0.00 4.63 R
2190 2249 0.108804 TCGATGAGCGTCCACTTTCC 60.109 55.000 0.00 0.00 41.80 3.13 R
2329 2556 0.179067 GACCAACAAGTCACCGGTGA 60.179 55.000 33.23 33.23 36.73 4.02 R
3688 3969 0.107703 TGGCGATGATCCTCACCAAC 60.108 55.000 5.37 0.00 0.00 3.77 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 3.729862 GAGGGTAAACACTCCTATCCG 57.270 52.381 0.60 0.00 40.47 4.18
24 25 3.029570 GAGGGTAAACACTCCTATCCGT 58.970 50.000 0.60 0.00 40.47 4.69
25 26 2.764572 AGGGTAAACACTCCTATCCGTG 59.235 50.000 0.00 0.00 37.18 4.94
26 27 2.762327 GGGTAAACACTCCTATCCGTGA 59.238 50.000 0.00 0.00 35.23 4.35
27 28 3.387050 GGGTAAACACTCCTATCCGTGAT 59.613 47.826 0.00 0.00 35.23 3.06
28 29 4.501058 GGGTAAACACTCCTATCCGTGATC 60.501 50.000 0.00 0.00 35.23 2.92
29 30 3.438297 AAACACTCCTATCCGTGATCG 57.562 47.619 0.00 0.00 35.23 3.69
30 31 2.054232 ACACTCCTATCCGTGATCGT 57.946 50.000 0.00 0.00 35.23 3.73
31 32 2.376109 ACACTCCTATCCGTGATCGTT 58.624 47.619 0.00 0.00 35.23 3.85
32 33 2.758979 ACACTCCTATCCGTGATCGTTT 59.241 45.455 0.00 0.00 35.23 3.60
33 34 3.116300 CACTCCTATCCGTGATCGTTTG 58.884 50.000 0.00 0.00 33.04 2.93
34 35 2.128035 CTCCTATCCGTGATCGTTTGC 58.872 52.381 0.00 0.00 35.01 3.68
35 36 1.754803 TCCTATCCGTGATCGTTTGCT 59.245 47.619 0.00 0.00 35.01 3.91
36 37 1.860950 CCTATCCGTGATCGTTTGCTG 59.139 52.381 0.00 0.00 35.01 4.41
37 38 1.860950 CTATCCGTGATCGTTTGCTGG 59.139 52.381 0.00 0.00 35.01 4.85
38 39 0.036388 ATCCGTGATCGTTTGCTGGT 60.036 50.000 0.00 0.00 35.01 4.00
39 40 0.948623 TCCGTGATCGTTTGCTGGTG 60.949 55.000 0.00 0.00 35.01 4.17
40 41 1.497278 CGTGATCGTTTGCTGGTGG 59.503 57.895 0.00 0.00 0.00 4.61
41 42 1.875963 GTGATCGTTTGCTGGTGGG 59.124 57.895 0.00 0.00 0.00 4.61
42 43 1.971167 TGATCGTTTGCTGGTGGGC 60.971 57.895 0.00 0.00 0.00 5.36
43 44 1.675641 GATCGTTTGCTGGTGGGCT 60.676 57.895 0.00 0.00 0.00 5.19
44 45 1.648467 GATCGTTTGCTGGTGGGCTC 61.648 60.000 0.00 0.00 0.00 4.70
45 46 2.410322 ATCGTTTGCTGGTGGGCTCA 62.410 55.000 0.00 0.00 0.00 4.26
46 47 2.192861 CGTTTGCTGGTGGGCTCAA 61.193 57.895 0.00 0.00 0.00 3.02
47 48 1.526575 CGTTTGCTGGTGGGCTCAAT 61.527 55.000 0.00 0.00 0.00 2.57
48 49 0.037975 GTTTGCTGGTGGGCTCAATG 60.038 55.000 0.00 0.00 0.00 2.82
49 50 0.178967 TTTGCTGGTGGGCTCAATGA 60.179 50.000 0.00 0.00 0.00 2.57
50 51 0.040058 TTGCTGGTGGGCTCAATGAT 59.960 50.000 0.00 0.00 0.00 2.45
51 52 0.681887 TGCTGGTGGGCTCAATGATG 60.682 55.000 0.00 0.00 0.00 3.07
52 53 0.682209 GCTGGTGGGCTCAATGATGT 60.682 55.000 0.00 0.00 0.00 3.06
53 54 1.386533 CTGGTGGGCTCAATGATGTC 58.613 55.000 0.00 0.00 0.00 3.06
54 55 0.392863 TGGTGGGCTCAATGATGTCG 60.393 55.000 0.00 0.00 0.00 4.35
55 56 1.097547 GGTGGGCTCAATGATGTCGG 61.098 60.000 0.00 0.00 0.00 4.79
56 57 0.107703 GTGGGCTCAATGATGTCGGA 60.108 55.000 0.00 0.00 0.00 4.55
57 58 0.107703 TGGGCTCAATGATGTCGGAC 60.108 55.000 0.00 0.00 0.00 4.79
58 59 0.107703 GGGCTCAATGATGTCGGACA 60.108 55.000 14.01 14.01 0.00 4.02
59 60 1.475751 GGGCTCAATGATGTCGGACAT 60.476 52.381 22.84 22.84 42.43 3.06
69 70 3.508744 ATGTCGGACATCAAATTTGGC 57.491 42.857 17.62 5.69 32.38 4.52
70 71 1.198867 TGTCGGACATCAAATTTGGCG 59.801 47.619 17.90 11.48 0.00 5.69
71 72 0.170116 TCGGACATCAAATTTGGCGC 59.830 50.000 17.90 0.00 0.00 6.53
72 73 0.171007 CGGACATCAAATTTGGCGCT 59.829 50.000 17.90 0.00 0.00 5.92
73 74 1.402720 CGGACATCAAATTTGGCGCTT 60.403 47.619 17.90 0.00 0.00 4.68
74 75 2.262211 GGACATCAAATTTGGCGCTTC 58.738 47.619 17.90 7.72 0.00 3.86
75 76 2.352617 GGACATCAAATTTGGCGCTTCA 60.353 45.455 17.90 0.00 0.00 3.02
76 77 2.919229 GACATCAAATTTGGCGCTTCAG 59.081 45.455 17.90 2.80 0.00 3.02
77 78 2.264813 CATCAAATTTGGCGCTTCAGG 58.735 47.619 17.90 0.00 0.00 3.86
78 79 1.614996 TCAAATTTGGCGCTTCAGGA 58.385 45.000 17.90 0.00 0.00 3.86
79 80 2.170166 TCAAATTTGGCGCTTCAGGAT 58.830 42.857 17.90 0.00 0.00 3.24
80 81 2.562298 TCAAATTTGGCGCTTCAGGATT 59.438 40.909 17.90 0.00 0.00 3.01
81 82 2.925563 CAAATTTGGCGCTTCAGGATTC 59.074 45.455 7.64 0.00 0.00 2.52
82 83 0.734889 ATTTGGCGCTTCAGGATTCG 59.265 50.000 7.64 0.00 0.00 3.34
83 84 1.922135 TTTGGCGCTTCAGGATTCGC 61.922 55.000 7.64 7.01 45.99 4.70
84 85 2.512515 GGCGCTTCAGGATTCGCT 60.513 61.111 7.64 0.00 45.97 4.93
85 86 2.109126 GGCGCTTCAGGATTCGCTT 61.109 57.895 7.64 0.00 45.97 4.68
86 87 0.810031 GGCGCTTCAGGATTCGCTTA 60.810 55.000 7.64 0.00 45.97 3.09
87 88 0.301987 GCGCTTCAGGATTCGCTTAC 59.698 55.000 0.00 0.00 43.70 2.34
88 89 0.572590 CGCTTCAGGATTCGCTTACG 59.427 55.000 0.00 0.00 42.01 3.18
89 90 1.641577 GCTTCAGGATTCGCTTACGT 58.358 50.000 0.00 0.00 41.18 3.57
90 91 2.793585 CGCTTCAGGATTCGCTTACGTA 60.794 50.000 0.00 0.00 41.18 3.57
91 92 2.789893 GCTTCAGGATTCGCTTACGTAG 59.210 50.000 0.00 0.00 41.18 3.51
93 94 4.421948 CTTCAGGATTCGCTTACGTAGTT 58.578 43.478 0.00 0.00 37.78 2.24
94 95 4.445452 TCAGGATTCGCTTACGTAGTTT 57.555 40.909 0.00 0.00 37.78 2.66
95 96 4.813027 TCAGGATTCGCTTACGTAGTTTT 58.187 39.130 0.00 0.00 37.78 2.43
96 97 4.860907 TCAGGATTCGCTTACGTAGTTTTC 59.139 41.667 0.00 0.00 37.78 2.29
97 98 4.624024 CAGGATTCGCTTACGTAGTTTTCA 59.376 41.667 0.00 0.00 37.78 2.69
98 99 5.119588 CAGGATTCGCTTACGTAGTTTTCAA 59.880 40.000 0.00 0.00 37.78 2.69
99 100 5.347907 AGGATTCGCTTACGTAGTTTTCAAG 59.652 40.000 0.00 0.00 37.78 3.02
100 101 4.379374 TTCGCTTACGTAGTTTTCAAGC 57.621 40.909 6.85 6.85 42.82 4.01
101 102 3.382855 TCGCTTACGTAGTTTTCAAGCA 58.617 40.909 15.13 2.64 45.49 3.91
102 103 3.991773 TCGCTTACGTAGTTTTCAAGCAT 59.008 39.130 15.13 0.00 45.49 3.79
103 104 5.162794 TCGCTTACGTAGTTTTCAAGCATA 58.837 37.500 15.13 2.44 45.49 3.14
104 105 5.808540 TCGCTTACGTAGTTTTCAAGCATAT 59.191 36.000 15.13 0.00 45.49 1.78
105 106 6.311935 TCGCTTACGTAGTTTTCAAGCATATT 59.688 34.615 15.13 0.00 45.49 1.28
106 107 6.623743 CGCTTACGTAGTTTTCAAGCATATTC 59.376 38.462 15.13 0.00 45.49 1.75
107 108 6.623743 GCTTACGTAGTTTTCAAGCATATTCG 59.376 38.462 11.14 0.00 44.83 3.34
108 109 7.585286 TTACGTAGTTTTCAAGCATATTCGT 57.415 32.000 0.00 0.00 37.78 3.85
109 110 6.091123 ACGTAGTTTTCAAGCATATTCGTC 57.909 37.500 0.00 0.00 37.78 4.20
110 111 5.181084 CGTAGTTTTCAAGCATATTCGTCG 58.819 41.667 0.00 0.00 0.00 5.12
111 112 4.600012 AGTTTTCAAGCATATTCGTCGG 57.400 40.909 0.00 0.00 0.00 4.79
112 113 3.098636 GTTTTCAAGCATATTCGTCGGC 58.901 45.455 0.00 0.00 0.00 5.54
113 114 2.017138 TTCAAGCATATTCGTCGGCA 57.983 45.000 0.00 0.00 0.00 5.69
114 115 1.570813 TCAAGCATATTCGTCGGCAG 58.429 50.000 0.00 0.00 0.00 4.85
115 116 1.134818 TCAAGCATATTCGTCGGCAGT 60.135 47.619 0.00 0.00 0.00 4.40
116 117 1.258982 CAAGCATATTCGTCGGCAGTC 59.741 52.381 0.00 0.00 0.00 3.51
117 118 0.249489 AGCATATTCGTCGGCAGTCC 60.249 55.000 0.00 0.00 0.00 3.85
118 119 0.529773 GCATATTCGTCGGCAGTCCA 60.530 55.000 0.00 0.00 0.00 4.02
119 120 1.934589 CATATTCGTCGGCAGTCCAA 58.065 50.000 0.00 0.00 0.00 3.53
120 121 2.483876 CATATTCGTCGGCAGTCCAAT 58.516 47.619 0.00 0.00 0.00 3.16
121 122 1.934589 TATTCGTCGGCAGTCCAATG 58.065 50.000 0.00 0.00 0.00 2.82
122 123 1.369091 ATTCGTCGGCAGTCCAATGC 61.369 55.000 0.00 0.00 45.74 3.56
123 124 2.434884 CGTCGGCAGTCCAATGCT 60.435 61.111 0.00 0.00 45.75 3.79
124 125 2.034879 CGTCGGCAGTCCAATGCTT 61.035 57.895 0.00 0.00 45.75 3.91
125 126 1.577328 CGTCGGCAGTCCAATGCTTT 61.577 55.000 0.00 0.00 45.75 3.51
126 127 1.448985 GTCGGCAGTCCAATGCTTTA 58.551 50.000 0.00 0.00 45.75 1.85
127 128 1.130561 GTCGGCAGTCCAATGCTTTAC 59.869 52.381 0.00 0.00 45.75 2.01
128 129 0.451783 CGGCAGTCCAATGCTTTACC 59.548 55.000 0.00 0.00 45.75 2.85
129 130 1.839424 GGCAGTCCAATGCTTTACCT 58.161 50.000 0.00 0.00 45.75 3.08
130 131 1.745653 GGCAGTCCAATGCTTTACCTC 59.254 52.381 0.00 0.00 45.75 3.85
131 132 1.745653 GCAGTCCAATGCTTTACCTCC 59.254 52.381 0.00 0.00 43.07 4.30
132 133 2.619074 GCAGTCCAATGCTTTACCTCCT 60.619 50.000 0.00 0.00 43.07 3.69
133 134 3.690460 CAGTCCAATGCTTTACCTCCTT 58.310 45.455 0.00 0.00 0.00 3.36
134 135 4.082125 CAGTCCAATGCTTTACCTCCTTT 58.918 43.478 0.00 0.00 0.00 3.11
135 136 4.524328 CAGTCCAATGCTTTACCTCCTTTT 59.476 41.667 0.00 0.00 0.00 2.27
136 137 5.011023 CAGTCCAATGCTTTACCTCCTTTTT 59.989 40.000 0.00 0.00 0.00 1.94
159 160 9.998106 TTTTTAGCTAAGTCTTGTATGAACTCT 57.002 29.630 6.24 0.00 0.00 3.24
162 163 7.948034 AGCTAAGTCTTGTATGAACTCTAGT 57.052 36.000 0.00 0.00 0.00 2.57
163 164 7.767261 AGCTAAGTCTTGTATGAACTCTAGTG 58.233 38.462 0.00 0.00 0.00 2.74
164 165 6.975772 GCTAAGTCTTGTATGAACTCTAGTGG 59.024 42.308 0.00 0.00 0.00 4.00
165 166 6.919775 AAGTCTTGTATGAACTCTAGTGGT 57.080 37.500 0.00 0.00 0.00 4.16
166 167 6.518208 AGTCTTGTATGAACTCTAGTGGTC 57.482 41.667 2.80 2.80 0.00 4.02
167 168 6.249951 AGTCTTGTATGAACTCTAGTGGTCT 58.750 40.000 10.97 0.35 0.00 3.85
168 169 6.151985 AGTCTTGTATGAACTCTAGTGGTCTG 59.848 42.308 10.97 0.00 0.00 3.51
169 170 6.010850 TCTTGTATGAACTCTAGTGGTCTGT 58.989 40.000 10.97 3.16 0.00 3.41
170 171 5.644977 TGTATGAACTCTAGTGGTCTGTG 57.355 43.478 10.97 0.00 0.00 3.66
171 172 5.077564 TGTATGAACTCTAGTGGTCTGTGT 58.922 41.667 10.97 0.00 0.00 3.72
172 173 4.527509 ATGAACTCTAGTGGTCTGTGTG 57.472 45.455 10.97 0.00 0.00 3.82
173 174 3.562182 TGAACTCTAGTGGTCTGTGTGA 58.438 45.455 10.97 0.00 0.00 3.58
174 175 3.570125 TGAACTCTAGTGGTCTGTGTGAG 59.430 47.826 10.97 0.00 0.00 3.51
175 176 3.510531 ACTCTAGTGGTCTGTGTGAGA 57.489 47.619 0.00 0.00 0.00 3.27
186 187 5.891810 GTCTGTGTGAGACTCTTTGTAAC 57.108 43.478 3.68 0.00 46.85 2.50
187 188 5.593010 GTCTGTGTGAGACTCTTTGTAACT 58.407 41.667 3.68 0.00 46.85 2.24
188 189 6.736123 GTCTGTGTGAGACTCTTTGTAACTA 58.264 40.000 3.68 0.00 46.85 2.24
189 190 7.371936 GTCTGTGTGAGACTCTTTGTAACTAT 58.628 38.462 3.68 0.00 46.85 2.12
190 191 7.327275 GTCTGTGTGAGACTCTTTGTAACTATG 59.673 40.741 3.68 0.00 46.85 2.23
191 192 7.014326 TCTGTGTGAGACTCTTTGTAACTATGT 59.986 37.037 3.68 0.00 0.00 2.29
192 193 7.497595 TGTGTGAGACTCTTTGTAACTATGTT 58.502 34.615 3.68 0.00 0.00 2.71
193 194 7.438160 TGTGTGAGACTCTTTGTAACTATGTTG 59.562 37.037 3.68 0.00 0.00 3.33
194 195 6.423905 TGTGAGACTCTTTGTAACTATGTTGC 59.576 38.462 3.68 0.00 0.00 4.17
195 196 6.647067 GTGAGACTCTTTGTAACTATGTTGCT 59.353 38.462 3.68 0.00 0.00 3.91
196 197 7.171678 GTGAGACTCTTTGTAACTATGTTGCTT 59.828 37.037 3.68 0.00 0.00 3.91
197 198 7.171508 TGAGACTCTTTGTAACTATGTTGCTTG 59.828 37.037 3.68 0.00 0.00 4.01
198 199 7.217200 AGACTCTTTGTAACTATGTTGCTTGA 58.783 34.615 0.00 0.00 0.00 3.02
199 200 7.880195 AGACTCTTTGTAACTATGTTGCTTGAT 59.120 33.333 0.00 0.00 0.00 2.57
200 201 8.396272 ACTCTTTGTAACTATGTTGCTTGATT 57.604 30.769 0.00 0.00 0.00 2.57
201 202 8.850156 ACTCTTTGTAACTATGTTGCTTGATTT 58.150 29.630 0.00 0.00 0.00 2.17
211 212 9.533253 ACTATGTTGCTTGATTTATAAAATGCC 57.467 29.630 1.21 0.00 0.00 4.40
212 213 6.884096 TGTTGCTTGATTTATAAAATGCCG 57.116 33.333 1.21 0.00 0.00 5.69
213 214 6.625362 TGTTGCTTGATTTATAAAATGCCGA 58.375 32.000 1.21 0.00 0.00 5.54
214 215 6.529829 TGTTGCTTGATTTATAAAATGCCGAC 59.470 34.615 1.21 6.80 0.00 4.79
215 216 5.587289 TGCTTGATTTATAAAATGCCGACC 58.413 37.500 1.21 0.00 0.00 4.79
216 217 5.359576 TGCTTGATTTATAAAATGCCGACCT 59.640 36.000 1.21 0.00 0.00 3.85
217 218 6.127479 TGCTTGATTTATAAAATGCCGACCTT 60.127 34.615 1.21 0.00 0.00 3.50
218 219 6.198966 GCTTGATTTATAAAATGCCGACCTTG 59.801 38.462 1.21 0.00 0.00 3.61
219 220 6.767524 TGATTTATAAAATGCCGACCTTGT 57.232 33.333 1.21 0.00 0.00 3.16
220 221 6.791303 TGATTTATAAAATGCCGACCTTGTC 58.209 36.000 1.21 0.00 0.00 3.18
221 222 5.570234 TTTATAAAATGCCGACCTTGTCC 57.430 39.130 0.00 0.00 0.00 4.02
222 223 2.570415 TAAAATGCCGACCTTGTCCA 57.430 45.000 0.00 0.00 0.00 4.02
223 224 1.247567 AAAATGCCGACCTTGTCCAG 58.752 50.000 0.00 0.00 0.00 3.86
224 225 0.400213 AAATGCCGACCTTGTCCAGA 59.600 50.000 0.00 0.00 0.00 3.86
225 226 0.400213 AATGCCGACCTTGTCCAGAA 59.600 50.000 0.00 0.00 0.00 3.02
226 227 0.400213 ATGCCGACCTTGTCCAGAAA 59.600 50.000 0.00 0.00 0.00 2.52
227 228 0.181587 TGCCGACCTTGTCCAGAAAA 59.818 50.000 0.00 0.00 0.00 2.29
228 229 1.314730 GCCGACCTTGTCCAGAAAAA 58.685 50.000 0.00 0.00 0.00 1.94
248 249 4.568152 AAAAACAACTTCCGGTCATCTG 57.432 40.909 0.00 0.00 0.00 2.90
249 250 2.185004 AACAACTTCCGGTCATCTGG 57.815 50.000 0.00 0.00 41.27 3.86
250 251 1.348064 ACAACTTCCGGTCATCTGGA 58.652 50.000 0.00 0.00 46.32 3.86
259 260 5.429681 TCCGGTCATCTGGAAAGAAATAA 57.570 39.130 0.00 0.00 45.16 1.40
260 261 5.811190 TCCGGTCATCTGGAAAGAAATAAA 58.189 37.500 0.00 0.00 45.16 1.40
261 262 5.646360 TCCGGTCATCTGGAAAGAAATAAAC 59.354 40.000 0.00 0.00 45.16 2.01
262 263 5.648092 CCGGTCATCTGGAAAGAAATAAACT 59.352 40.000 0.00 0.00 42.46 2.66
263 264 6.821665 CCGGTCATCTGGAAAGAAATAAACTA 59.178 38.462 0.00 0.00 42.46 2.24
264 265 7.335924 CCGGTCATCTGGAAAGAAATAAACTAA 59.664 37.037 0.00 0.00 42.46 2.24
265 266 8.726988 CGGTCATCTGGAAAGAAATAAACTAAA 58.273 33.333 0.00 0.00 0.00 1.85
266 267 9.841880 GGTCATCTGGAAAGAAATAAACTAAAC 57.158 33.333 0.00 0.00 0.00 2.01
273 274 9.511272 TGGAAAGAAATAAACTAAACTAGTCCC 57.489 33.333 0.00 0.00 38.26 4.46
274 275 9.511272 GGAAAGAAATAAACTAAACTAGTCCCA 57.489 33.333 0.00 0.00 38.26 4.37
278 279 9.462606 AGAAATAAACTAAACTAGTCCCAATGG 57.537 33.333 0.00 0.00 38.26 3.16
279 280 7.640597 AATAAACTAAACTAGTCCCAATGGC 57.359 36.000 0.00 0.00 38.26 4.40
280 281 3.646736 ACTAAACTAGTCCCAATGGCC 57.353 47.619 0.00 0.00 32.47 5.36
281 282 2.916934 ACTAAACTAGTCCCAATGGCCA 59.083 45.455 8.56 8.56 32.47 5.36
282 283 2.215942 AAACTAGTCCCAATGGCCAC 57.784 50.000 8.16 0.00 0.00 5.01
283 284 1.072266 AACTAGTCCCAATGGCCACA 58.928 50.000 8.16 0.00 0.00 4.17
284 285 1.072266 ACTAGTCCCAATGGCCACAA 58.928 50.000 8.16 0.00 0.00 3.33
285 286 1.271926 ACTAGTCCCAATGGCCACAAC 60.272 52.381 8.16 1.68 0.00 3.32
286 287 0.039035 TAGTCCCAATGGCCACAACC 59.961 55.000 8.16 0.00 0.00 3.77
287 288 2.119391 TCCCAATGGCCACAACCC 59.881 61.111 8.16 0.00 0.00 4.11
288 289 2.203758 CCCAATGGCCACAACCCA 60.204 61.111 8.16 0.00 36.66 4.51
289 290 2.582493 CCCAATGGCCACAACCCAC 61.582 63.158 8.16 0.00 34.68 4.61
290 291 2.650196 CAATGGCCACAACCCACG 59.350 61.111 8.16 0.00 34.68 4.94
291 292 2.197324 AATGGCCACAACCCACGT 59.803 55.556 8.16 0.00 34.68 4.49
292 293 2.199652 AATGGCCACAACCCACGTG 61.200 57.895 8.16 9.08 34.68 4.49
293 294 2.632602 AATGGCCACAACCCACGTGA 62.633 55.000 19.30 0.00 36.43 4.35
294 295 2.282180 GGCCACAACCCACGTGAT 60.282 61.111 19.30 0.97 36.43 3.06
295 296 2.625823 GGCCACAACCCACGTGATG 61.626 63.158 19.30 15.07 36.43 3.07
296 297 1.896660 GCCACAACCCACGTGATGT 60.897 57.895 19.30 15.74 36.43 3.06
297 298 0.604243 GCCACAACCCACGTGATGTA 60.604 55.000 19.30 0.00 36.43 2.29
298 299 1.948611 GCCACAACCCACGTGATGTAT 60.949 52.381 19.30 3.30 36.43 2.29
299 300 2.678479 GCCACAACCCACGTGATGTATA 60.678 50.000 19.30 0.00 36.43 1.47
300 301 3.804036 CCACAACCCACGTGATGTATAT 58.196 45.455 19.30 0.49 36.43 0.86
301 302 4.741235 GCCACAACCCACGTGATGTATATA 60.741 45.833 19.30 0.00 36.43 0.86
302 303 5.547465 CCACAACCCACGTGATGTATATAT 58.453 41.667 19.30 0.00 36.43 0.86
303 304 6.693466 CCACAACCCACGTGATGTATATATA 58.307 40.000 19.30 0.00 36.43 0.86
304 305 6.811665 CCACAACCCACGTGATGTATATATAG 59.188 42.308 19.30 5.45 36.43 1.31
305 306 7.375834 CACAACCCACGTGATGTATATATAGT 58.624 38.462 19.30 2.79 36.43 2.12
306 307 7.541091 CACAACCCACGTGATGTATATATAGTC 59.459 40.741 19.30 0.00 36.43 2.59
307 308 6.770746 ACCCACGTGATGTATATATAGTCC 57.229 41.667 19.30 0.00 0.00 3.85
308 309 6.250711 ACCCACGTGATGTATATATAGTCCA 58.749 40.000 19.30 0.00 0.00 4.02
309 310 6.377429 ACCCACGTGATGTATATATAGTCCAG 59.623 42.308 19.30 0.00 0.00 3.86
310 311 6.602009 CCCACGTGATGTATATATAGTCCAGA 59.398 42.308 19.30 0.00 0.00 3.86
311 312 7.122204 CCCACGTGATGTATATATAGTCCAGAA 59.878 40.741 19.30 0.00 0.00 3.02
312 313 8.687242 CCACGTGATGTATATATAGTCCAGAAT 58.313 37.037 19.30 0.00 0.00 2.40
313 314 9.508567 CACGTGATGTATATATAGTCCAGAATG 57.491 37.037 10.90 0.00 0.00 2.67
314 315 8.191446 ACGTGATGTATATATAGTCCAGAATGC 58.809 37.037 0.00 0.00 31.97 3.56
315 316 7.649705 CGTGATGTATATATAGTCCAGAATGCC 59.350 40.741 0.00 0.00 31.97 4.40
316 317 7.928706 GTGATGTATATATAGTCCAGAATGCCC 59.071 40.741 0.00 0.00 31.97 5.36
317 318 6.808321 TGTATATATAGTCCAGAATGCCCC 57.192 41.667 0.00 0.00 31.97 5.80
318 319 6.268414 TGTATATATAGTCCAGAATGCCCCA 58.732 40.000 0.00 0.00 31.97 4.96
319 320 5.700402 ATATATAGTCCAGAATGCCCCAC 57.300 43.478 0.00 0.00 31.97 4.61
320 321 0.469917 ATAGTCCAGAATGCCCCACG 59.530 55.000 0.00 0.00 31.97 4.94
321 322 0.907704 TAGTCCAGAATGCCCCACGT 60.908 55.000 0.00 0.00 31.97 4.49
322 323 2.040544 GTCCAGAATGCCCCACGTG 61.041 63.158 9.08 9.08 31.97 4.49
323 324 2.220586 TCCAGAATGCCCCACGTGA 61.221 57.895 19.30 0.00 31.97 4.35
324 325 1.303236 CCAGAATGCCCCACGTGAA 60.303 57.895 19.30 0.00 31.97 3.18
325 326 1.308069 CCAGAATGCCCCACGTGAAG 61.308 60.000 19.30 8.88 31.97 3.02
326 327 0.321564 CAGAATGCCCCACGTGAAGA 60.322 55.000 19.30 0.00 0.00 2.87
327 328 0.400213 AGAATGCCCCACGTGAAGAA 59.600 50.000 19.30 1.93 0.00 2.52
328 329 1.202879 AGAATGCCCCACGTGAAGAAA 60.203 47.619 19.30 0.00 0.00 2.52
329 330 1.611491 GAATGCCCCACGTGAAGAAAA 59.389 47.619 19.30 0.00 0.00 2.29
330 331 1.698506 ATGCCCCACGTGAAGAAAAA 58.301 45.000 19.30 0.00 0.00 1.94
351 352 3.197614 CCGAGCGAGGCTGACTTA 58.802 61.111 0.00 0.00 39.88 2.24
352 353 1.226717 CCGAGCGAGGCTGACTTAC 60.227 63.158 0.00 0.00 39.88 2.34
353 354 1.583967 CGAGCGAGGCTGACTTACG 60.584 63.158 0.00 0.00 39.88 3.18
354 355 1.507174 GAGCGAGGCTGACTTACGT 59.493 57.895 0.00 0.00 39.88 3.57
355 356 0.798771 GAGCGAGGCTGACTTACGTG 60.799 60.000 0.00 0.00 39.88 4.49
356 357 1.211969 GCGAGGCTGACTTACGTGA 59.788 57.895 0.00 0.00 0.00 4.35
357 358 0.388134 GCGAGGCTGACTTACGTGAA 60.388 55.000 0.00 0.00 0.00 3.18
358 359 1.618861 CGAGGCTGACTTACGTGAAG 58.381 55.000 0.00 0.59 41.37 3.02
359 360 1.199327 CGAGGCTGACTTACGTGAAGA 59.801 52.381 0.00 0.00 38.65 2.87
360 361 2.351447 CGAGGCTGACTTACGTGAAGAA 60.351 50.000 0.00 0.00 38.65 2.52
361 362 3.650139 GAGGCTGACTTACGTGAAGAAA 58.350 45.455 0.00 0.00 38.65 2.52
362 363 4.056050 GAGGCTGACTTACGTGAAGAAAA 58.944 43.478 0.00 0.00 38.65 2.29
363 364 4.642429 AGGCTGACTTACGTGAAGAAAAT 58.358 39.130 0.00 0.00 38.65 1.82
364 365 5.790593 AGGCTGACTTACGTGAAGAAAATA 58.209 37.500 0.00 0.00 38.65 1.40
365 366 6.228258 AGGCTGACTTACGTGAAGAAAATAA 58.772 36.000 0.00 0.00 38.65 1.40
366 367 6.369065 AGGCTGACTTACGTGAAGAAAATAAG 59.631 38.462 0.00 0.00 38.65 1.73
367 368 6.147328 GGCTGACTTACGTGAAGAAAATAAGT 59.853 38.462 0.00 0.00 38.48 2.24
368 369 7.228150 GCTGACTTACGTGAAGAAAATAAGTC 58.772 38.462 12.80 12.80 46.24 3.01
369 370 7.116519 GCTGACTTACGTGAAGAAAATAAGTCT 59.883 37.037 17.93 0.00 46.22 3.24
370 371 9.622004 CTGACTTACGTGAAGAAAATAAGTCTA 57.378 33.333 17.93 8.03 46.22 2.59
371 372 9.970395 TGACTTACGTGAAGAAAATAAGTCTAA 57.030 29.630 17.93 2.36 46.22 2.10
388 389 6.737254 AGTCTAAATTGTTGTATCAACCGG 57.263 37.500 0.00 0.00 0.00 5.28
389 390 6.469410 AGTCTAAATTGTTGTATCAACCGGA 58.531 36.000 9.46 0.00 0.00 5.14
390 391 7.110155 AGTCTAAATTGTTGTATCAACCGGAT 58.890 34.615 9.46 0.00 40.14 4.18
391 392 7.065803 AGTCTAAATTGTTGTATCAACCGGATG 59.934 37.037 9.46 7.03 36.72 3.51
392 393 5.975693 AAATTGTTGTATCAACCGGATGT 57.024 34.783 9.46 0.00 36.72 3.06
393 394 5.975693 AATTGTTGTATCAACCGGATGTT 57.024 34.783 9.46 4.07 36.72 2.71
402 403 2.524569 AACCGGATGTTGCCTTTTTG 57.475 45.000 9.46 0.00 35.31 2.44
403 404 1.408969 ACCGGATGTTGCCTTTTTGT 58.591 45.000 9.46 0.00 0.00 2.83
404 405 2.588620 ACCGGATGTTGCCTTTTTGTA 58.411 42.857 9.46 0.00 0.00 2.41
405 406 2.959707 ACCGGATGTTGCCTTTTTGTAA 59.040 40.909 9.46 0.00 0.00 2.41
406 407 3.385111 ACCGGATGTTGCCTTTTTGTAAA 59.615 39.130 9.46 0.00 0.00 2.01
407 408 3.738791 CCGGATGTTGCCTTTTTGTAAAC 59.261 43.478 0.00 0.00 0.00 2.01
408 409 3.423867 CGGATGTTGCCTTTTTGTAAACG 59.576 43.478 0.00 0.00 0.00 3.60
409 410 4.364860 GGATGTTGCCTTTTTGTAAACGT 58.635 39.130 0.00 0.00 0.00 3.99
410 411 4.208253 GGATGTTGCCTTTTTGTAAACGTG 59.792 41.667 0.00 0.00 0.00 4.49
411 412 2.924290 TGTTGCCTTTTTGTAAACGTGC 59.076 40.909 0.00 0.00 0.00 5.34
412 413 1.828832 TGCCTTTTTGTAAACGTGCG 58.171 45.000 0.00 0.00 0.00 5.34
413 414 1.132643 TGCCTTTTTGTAAACGTGCGT 59.867 42.857 0.00 0.00 0.00 5.24
414 415 1.776897 GCCTTTTTGTAAACGTGCGTC 59.223 47.619 0.00 0.00 0.00 5.19
415 416 2.540157 GCCTTTTTGTAAACGTGCGTCT 60.540 45.455 0.00 0.00 0.00 4.18
416 417 3.285745 CCTTTTTGTAAACGTGCGTCTC 58.714 45.455 0.00 0.00 0.00 3.36
417 418 3.001939 CCTTTTTGTAAACGTGCGTCTCT 59.998 43.478 0.00 0.00 0.00 3.10
418 419 4.209703 CCTTTTTGTAAACGTGCGTCTCTA 59.790 41.667 0.00 0.00 0.00 2.43
419 420 5.107220 CCTTTTTGTAAACGTGCGTCTCTAT 60.107 40.000 0.00 0.00 0.00 1.98
420 421 6.089820 CCTTTTTGTAAACGTGCGTCTCTATA 59.910 38.462 0.00 0.00 0.00 1.31
421 422 7.359431 CCTTTTTGTAAACGTGCGTCTCTATAA 60.359 37.037 0.00 0.00 0.00 0.98
422 423 5.997732 TTGTAAACGTGCGTCTCTATAAC 57.002 39.130 0.00 0.00 0.00 1.89
423 424 5.300969 TGTAAACGTGCGTCTCTATAACT 57.699 39.130 0.00 0.00 0.00 2.24
424 425 5.327091 TGTAAACGTGCGTCTCTATAACTC 58.673 41.667 0.00 0.00 0.00 3.01
425 426 4.698583 AAACGTGCGTCTCTATAACTCT 57.301 40.909 0.00 0.00 0.00 3.24
426 427 5.808042 AAACGTGCGTCTCTATAACTCTA 57.192 39.130 0.00 0.00 0.00 2.43
427 428 5.406767 AACGTGCGTCTCTATAACTCTAG 57.593 43.478 0.00 0.00 0.00 2.43
428 429 4.440880 ACGTGCGTCTCTATAACTCTAGT 58.559 43.478 0.00 0.00 0.00 2.57
429 430 4.507388 ACGTGCGTCTCTATAACTCTAGTC 59.493 45.833 0.00 0.00 0.00 2.59
430 431 4.746115 CGTGCGTCTCTATAACTCTAGTCT 59.254 45.833 0.00 0.00 0.00 3.24
431 432 5.919707 CGTGCGTCTCTATAACTCTAGTCTA 59.080 44.000 0.00 0.00 0.00 2.59
432 433 6.088483 CGTGCGTCTCTATAACTCTAGTCTAG 59.912 46.154 0.00 0.00 0.00 2.43
433 434 7.147312 GTGCGTCTCTATAACTCTAGTCTAGA 58.853 42.308 9.28 9.28 0.00 2.43
434 435 7.816031 GTGCGTCTCTATAACTCTAGTCTAGAT 59.184 40.741 10.06 0.00 33.66 1.98
435 436 9.022884 TGCGTCTCTATAACTCTAGTCTAGATA 57.977 37.037 10.06 1.72 33.66 1.98
436 437 9.294030 GCGTCTCTATAACTCTAGTCTAGATAC 57.706 40.741 10.06 5.91 33.66 2.24
437 438 9.793252 CGTCTCTATAACTCTAGTCTAGATACC 57.207 40.741 10.06 0.00 33.66 2.73
465 466 8.960591 ACATATATTGAAGTTCTGTTTTGAGGG 58.039 33.333 4.17 0.00 0.00 4.30
466 467 9.177608 CATATATTGAAGTTCTGTTTTGAGGGA 57.822 33.333 4.17 0.00 0.00 4.20
467 468 9.927081 ATATATTGAAGTTCTGTTTTGAGGGAT 57.073 29.630 4.17 0.00 0.00 3.85
469 470 6.877611 TTGAAGTTCTGTTTTGAGGGATAC 57.122 37.500 4.17 0.00 0.00 2.24
490 491 9.924010 GGATACCCATAGTTCTGTCTACTATAT 57.076 37.037 0.00 0.00 36.84 0.86
1771 1779 3.164011 GACGACGTCGCGGACTTG 61.164 66.667 35.92 9.56 44.43 3.16
1965 2013 2.434884 CGCCACCGCTGTCTGATT 60.435 61.111 0.00 0.00 0.00 2.57
2000 2048 0.616395 TCCCCGCCATTGTCTCTACA 60.616 55.000 0.00 0.00 0.00 2.74
2015 2063 3.695060 TCTCTACAATCTTCTCACCCGAC 59.305 47.826 0.00 0.00 0.00 4.79
2051 2102 1.509923 CCTCGTCTCCCGTACAACC 59.490 63.158 0.00 0.00 37.94 3.77
2059 2110 2.813908 CCGTACAACCTCCGCAGC 60.814 66.667 0.00 0.00 0.00 5.25
2074 2125 1.518903 GCAGCCAGTGGGACAAGAAC 61.519 60.000 12.15 0.00 44.16 3.01
2105 2164 3.698040 GGGAATTATCTACGGCGATCCTA 59.302 47.826 16.62 0.00 0.00 2.94
2138 2197 0.721718 GCATCACCAACGTCAGCTAC 59.278 55.000 0.00 0.00 0.00 3.58
2201 2260 2.047560 GGGGACGGAAAGTGGACG 60.048 66.667 0.00 0.00 0.00 4.79
2210 2269 1.272781 GAAAGTGGACGCTCATCGAG 58.727 55.000 0.00 0.00 41.67 4.04
2219 2278 1.133407 ACGCTCATCGAGAGGACTTTC 59.867 52.381 12.01 0.00 44.86 2.62
2228 2287 0.237761 AGAGGACTTTCGACGACGTG 59.762 55.000 4.58 0.00 40.69 4.49
2231 2290 1.050767 GGACTTTCGACGACGTGAAG 58.949 55.000 4.58 17.94 40.69 3.02
2279 2506 1.977293 GAGGCAGGATCCTGGTCACC 61.977 65.000 36.92 29.20 43.77 4.02
2288 2515 3.341629 CTGGTCACCATGGGGGCT 61.342 66.667 20.21 0.00 42.05 5.19
2373 2600 1.990799 CGAATACGAGTGCAAGGACA 58.009 50.000 0.00 0.00 42.66 4.02
2384 2611 1.336887 TGCAAGGACAGCTACGTCTTC 60.337 52.381 0.00 0.00 36.12 2.87
2393 2620 1.062206 CTACGTCTTCGAGTCCCGC 59.938 63.158 0.00 0.00 40.62 6.13
2427 2654 2.511600 CATCGGTTCGCACCTCCC 60.512 66.667 1.96 0.00 41.64 4.30
2428 2655 4.143333 ATCGGTTCGCACCTCCCG 62.143 66.667 1.96 0.00 41.64 5.14
2440 2667 1.290955 CCTCCCGCAGTGTTTCGTA 59.709 57.895 0.00 0.00 0.00 3.43
2442 2669 1.005867 TCCCGCAGTGTTTCGTACC 60.006 57.895 0.00 0.00 0.00 3.34
2444 2671 1.289109 CCCGCAGTGTTTCGTACCAG 61.289 60.000 0.00 0.00 0.00 4.00
2479 2706 1.680338 GTTGATGCCCTATGGGTGTC 58.320 55.000 4.42 3.92 46.51 3.67
2480 2707 1.064758 GTTGATGCCCTATGGGTGTCA 60.065 52.381 4.42 6.31 46.51 3.58
2486 2713 0.327924 CCCTATGGGTGTCAGTGCAA 59.672 55.000 0.00 0.00 38.25 4.08
2489 2716 2.228822 CCTATGGGTGTCAGTGCAAAAC 59.771 50.000 0.00 0.00 0.00 2.43
2539 2769 0.321653 AAGAAGATGCGGTGGGTGAC 60.322 55.000 0.00 0.00 0.00 3.67
2570 2800 1.454295 TAGCCTGGCGGATCGTGTA 60.454 57.895 13.96 0.00 0.00 2.90
2579 2809 3.119065 TGGCGGATCGTGTATTGTTTCTA 60.119 43.478 0.00 0.00 0.00 2.10
2723 2953 5.503520 CGTTTTCAGGTACAACTTCCTCAAC 60.504 44.000 0.00 0.00 30.91 3.18
2821 3051 4.516698 CGCTATTGCTCCAATTCAGGTATT 59.483 41.667 0.00 0.00 35.54 1.89
2827 3067 7.859325 TTGCTCCAATTCAGGTATTTACTAC 57.141 36.000 0.00 0.00 0.00 2.73
2829 3069 6.821665 TGCTCCAATTCAGGTATTTACTACAC 59.178 38.462 0.00 0.00 31.44 2.90
2839 3079 8.143193 TCAGGTATTTACTACACGAGTTCAAAA 58.857 33.333 0.00 0.00 39.81 2.44
2841 3081 9.498176 AGGTATTTACTACACGAGTTCAAAATT 57.502 29.630 0.00 0.00 39.81 1.82
2842 3082 9.537848 GGTATTTACTACACGAGTTCAAAATTG 57.462 33.333 0.00 0.00 39.81 2.32
2895 3143 7.733402 TTTTGTGGTCACATAAGTTAGTACC 57.267 36.000 4.53 0.00 41.52 3.34
2905 3157 6.587226 CACATAAGTTAGTACCGCTGTGTAAA 59.413 38.462 0.00 0.00 0.00 2.01
2929 3183 7.539034 AAGTTTAACCCTTGAACATAAGCAT 57.461 32.000 0.00 0.00 32.15 3.79
2931 3185 6.948309 AGTTTAACCCTTGAACATAAGCATCT 59.052 34.615 0.00 0.00 32.15 2.90
2932 3186 7.121315 AGTTTAACCCTTGAACATAAGCATCTC 59.879 37.037 0.00 0.00 32.15 2.75
2933 3187 4.574674 ACCCTTGAACATAAGCATCTCA 57.425 40.909 0.00 0.00 0.00 3.27
2940 3194 6.732531 TGAACATAAGCATCTCAAACTGAG 57.267 37.500 0.00 0.00 45.59 3.35
3031 3288 0.669932 AGCAGAAGCAGCAGAAGACG 60.670 55.000 0.00 0.00 45.49 4.18
3040 3305 1.004440 GCAGAAGACGGCTCCAGTT 60.004 57.895 0.00 0.00 34.59 3.16
3041 3306 1.294659 GCAGAAGACGGCTCCAGTTG 61.295 60.000 0.00 0.00 34.59 3.16
3046 3311 0.900647 AGACGGCTCCAGTTGCTAGT 60.901 55.000 0.00 0.00 0.00 2.57
3050 3315 1.066303 CGGCTCCAGTTGCTAGTCTAG 59.934 57.143 2.18 2.18 0.00 2.43
3137 3402 0.537188 CACGGTGAATAGCTCCCAGT 59.463 55.000 0.74 0.00 0.00 4.00
3146 3411 2.859165 TAGCTCCCAGTTGGAACTTG 57.141 50.000 0.00 0.00 44.57 3.16
3152 3417 3.699038 CTCCCAGTTGGAACTTGTTTTCA 59.301 43.478 0.00 0.00 44.57 2.69
3159 3424 2.119457 GGAACTTGTTTTCAGCAAGCG 58.881 47.619 5.12 0.00 45.09 4.68
3170 3435 4.629115 GCAAGCGCGGCAAAGTGT 62.629 61.111 19.91 0.00 0.00 3.55
3174 3439 1.566018 AAGCGCGGCAAAGTGTCTAC 61.566 55.000 8.83 0.00 0.00 2.59
3175 3440 2.027625 GCGCGGCAAAGTGTCTACT 61.028 57.895 8.83 0.00 39.32 2.57
3187 3452 1.132643 GTGTCTACTGCCGAGGTACTG 59.867 57.143 0.00 0.00 41.55 2.74
3191 3456 2.026915 TCTACTGCCGAGGTACTGTACA 60.027 50.000 18.79 0.00 41.55 2.90
3303 3568 5.239351 CAAAATGTTTCTGGATGGATGCAA 58.761 37.500 0.00 0.00 0.00 4.08
3367 3632 3.963841 CGACGTCGTCTTCCATCG 58.036 61.111 29.08 4.96 34.11 3.84
3387 3652 6.092122 CCATCGTAACATCACAACTACATGTT 59.908 38.462 2.30 0.00 42.20 2.71
3409 3674 6.127451 TGTTCCTTGATCTTCTTGCTCGTATA 60.127 38.462 0.00 0.00 0.00 1.47
3483 3748 5.177326 GCATAATTGGTTGCATCTCCAAAA 58.823 37.500 17.90 11.89 45.08 2.44
3490 3755 4.107622 GGTTGCATCTCCAAAATCGATTG 58.892 43.478 12.25 1.06 0.00 2.67
3502 3767 6.652900 TCCAAAATCGATTGTGTAGAATGTCA 59.347 34.615 23.52 0.00 0.00 3.58
3503 3768 6.963242 CCAAAATCGATTGTGTAGAATGTCAG 59.037 38.462 23.52 4.03 0.00 3.51
3511 3776 7.254117 CGATTGTGTAGAATGTCAGACCATAAC 60.254 40.741 0.00 0.00 0.00 1.89
3512 3777 6.605471 TGTGTAGAATGTCAGACCATAACT 57.395 37.500 0.00 0.00 0.00 2.24
3688 3969 1.715785 GGGAGAGGGAGATGGAGAAG 58.284 60.000 0.00 0.00 0.00 2.85
3692 3973 2.433970 GAGAGGGAGATGGAGAAGTTGG 59.566 54.545 0.00 0.00 0.00 3.77
3745 4026 0.443869 CGATGCCAAAGTTCTGACCG 59.556 55.000 0.00 0.00 0.00 4.79
3751 4032 1.238439 CAAAGTTCTGACCGGTGCAT 58.762 50.000 14.63 0.00 0.00 3.96
3843 4124 1.676014 CCTCATGGGGTTGAACTCGTC 60.676 57.143 2.32 0.00 0.00 4.20
3848 4129 3.774702 GGTTGAACTCGTCGGCGC 61.775 66.667 3.52 0.00 38.14 6.53
3874 4155 1.523758 CCCAAACTTCCTTGTCTCGG 58.476 55.000 0.00 0.00 0.00 4.63
3937 4218 1.333636 CCTTGATGCCTCCGAGGACT 61.334 60.000 19.33 3.67 37.67 3.85
4026 4307 5.097742 ACCATGTGTAGCTGCATAAGTAA 57.902 39.130 8.05 0.00 0.00 2.24
4053 4334 1.810755 CACAGAGCATGCTCACAACAT 59.189 47.619 40.91 22.28 44.99 2.71
4066 4347 7.477144 TGCTCACAACATATTAGTTATTCCG 57.523 36.000 0.00 0.00 0.00 4.30
4084 4365 4.231718 TCCGTCTTTGCAAAATTACACC 57.768 40.909 13.84 0.00 0.00 4.16
4090 4371 6.806249 CGTCTTTGCAAAATTACACCACATAT 59.194 34.615 13.84 0.00 0.00 1.78
4134 4417 5.488645 TTTGTAAACTTCGACCAACCTTC 57.511 39.130 0.00 0.00 0.00 3.46
4137 4420 6.105397 TGTAAACTTCGACCAACCTTCTAT 57.895 37.500 0.00 0.00 0.00 1.98
4226 4514 5.865085 AGTTGAAATGTACTCACCAGCTTA 58.135 37.500 0.00 0.00 0.00 3.09
4234 4522 3.577805 ACTCACCAGCTTAAGTTTGGT 57.422 42.857 21.16 21.16 45.77 3.67
4325 4613 2.449518 TTGTCCTGCCACTGGGGA 60.450 61.111 0.00 0.00 40.01 4.81
4348 4636 1.973281 CGGCAAGCAGGAACATGGT 60.973 57.895 0.00 0.00 0.00 3.55
4354 4642 1.293062 AGCAGGAACATGGTCCAGAT 58.707 50.000 31.20 20.27 40.48 2.90
4429 4717 0.895530 ATCACCTCGTCGGTTGTCAT 59.104 50.000 0.00 0.00 46.37 3.06
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.181464 GGATAGGAGTGTTTACCCTCTGC 60.181 52.174 0.00 0.00 32.16 4.26
1 2 3.068307 CGGATAGGAGTGTTTACCCTCTG 59.932 52.174 0.00 0.00 32.16 3.35
2 3 3.297736 CGGATAGGAGTGTTTACCCTCT 58.702 50.000 0.00 0.00 32.16 3.69
3 4 3.029570 ACGGATAGGAGTGTTTACCCTC 58.970 50.000 0.00 0.00 32.16 4.30
4 5 2.764572 CACGGATAGGAGTGTTTACCCT 59.235 50.000 0.00 0.00 33.97 4.34
5 6 2.762327 TCACGGATAGGAGTGTTTACCC 59.238 50.000 0.00 0.00 39.25 3.69
6 7 4.618965 GATCACGGATAGGAGTGTTTACC 58.381 47.826 0.00 0.00 39.25 2.85
7 8 4.201990 ACGATCACGGATAGGAGTGTTTAC 60.202 45.833 0.00 0.00 44.46 2.01
8 9 3.949754 ACGATCACGGATAGGAGTGTTTA 59.050 43.478 0.00 0.00 44.46 2.01
9 10 2.758979 ACGATCACGGATAGGAGTGTTT 59.241 45.455 0.00 0.00 44.46 2.83
10 11 2.376109 ACGATCACGGATAGGAGTGTT 58.624 47.619 0.00 0.00 44.46 3.32
11 12 2.054232 ACGATCACGGATAGGAGTGT 57.946 50.000 0.00 0.00 44.46 3.55
12 13 3.116300 CAAACGATCACGGATAGGAGTG 58.884 50.000 0.00 0.00 44.46 3.51
13 14 2.481449 GCAAACGATCACGGATAGGAGT 60.481 50.000 0.00 0.00 44.46 3.85
14 15 2.128035 GCAAACGATCACGGATAGGAG 58.872 52.381 0.00 0.00 44.46 3.69
15 16 1.754803 AGCAAACGATCACGGATAGGA 59.245 47.619 0.00 0.00 44.46 2.94
16 17 1.860950 CAGCAAACGATCACGGATAGG 59.139 52.381 0.00 0.00 44.46 2.57
17 18 1.860950 CCAGCAAACGATCACGGATAG 59.139 52.381 0.00 0.00 44.46 2.08
18 19 1.206132 ACCAGCAAACGATCACGGATA 59.794 47.619 0.00 0.00 44.46 2.59
19 20 0.036388 ACCAGCAAACGATCACGGAT 60.036 50.000 0.00 0.00 44.46 4.18
20 21 0.948623 CACCAGCAAACGATCACGGA 60.949 55.000 0.00 0.00 44.46 4.69
21 22 1.497278 CACCAGCAAACGATCACGG 59.503 57.895 0.00 0.00 44.46 4.94
22 23 1.497278 CCACCAGCAAACGATCACG 59.503 57.895 0.00 0.00 45.75 4.35
23 24 1.875963 CCCACCAGCAAACGATCAC 59.124 57.895 0.00 0.00 0.00 3.06
24 25 1.971167 GCCCACCAGCAAACGATCA 60.971 57.895 0.00 0.00 0.00 2.92
25 26 1.648467 GAGCCCACCAGCAAACGATC 61.648 60.000 0.00 0.00 34.23 3.69
26 27 1.675641 GAGCCCACCAGCAAACGAT 60.676 57.895 0.00 0.00 34.23 3.73
27 28 2.281484 GAGCCCACCAGCAAACGA 60.281 61.111 0.00 0.00 34.23 3.85
28 29 1.526575 ATTGAGCCCACCAGCAAACG 61.527 55.000 0.00 0.00 34.23 3.60
29 30 0.037975 CATTGAGCCCACCAGCAAAC 60.038 55.000 0.00 0.00 34.23 2.93
30 31 0.178967 TCATTGAGCCCACCAGCAAA 60.179 50.000 0.00 0.00 34.23 3.68
31 32 0.040058 ATCATTGAGCCCACCAGCAA 59.960 50.000 0.00 0.00 34.23 3.91
32 33 0.681887 CATCATTGAGCCCACCAGCA 60.682 55.000 0.00 0.00 34.23 4.41
33 34 0.682209 ACATCATTGAGCCCACCAGC 60.682 55.000 0.00 0.00 0.00 4.85
34 35 1.386533 GACATCATTGAGCCCACCAG 58.613 55.000 0.00 0.00 0.00 4.00
35 36 0.392863 CGACATCATTGAGCCCACCA 60.393 55.000 0.00 0.00 0.00 4.17
36 37 1.097547 CCGACATCATTGAGCCCACC 61.098 60.000 0.00 0.00 0.00 4.61
37 38 0.107703 TCCGACATCATTGAGCCCAC 60.108 55.000 0.00 0.00 0.00 4.61
38 39 0.107703 GTCCGACATCATTGAGCCCA 60.108 55.000 0.00 0.00 0.00 5.36
39 40 0.107703 TGTCCGACATCATTGAGCCC 60.108 55.000 0.00 0.00 0.00 5.19
40 41 1.959042 ATGTCCGACATCATTGAGCC 58.041 50.000 8.28 0.00 32.38 4.70
49 50 2.159393 CGCCAAATTTGATGTCCGACAT 60.159 45.455 19.86 14.01 42.43 3.06
50 51 1.198867 CGCCAAATTTGATGTCCGACA 59.801 47.619 19.86 3.10 0.00 4.35
51 52 1.895051 CGCCAAATTTGATGTCCGAC 58.105 50.000 19.86 0.00 0.00 4.79
52 53 0.170116 GCGCCAAATTTGATGTCCGA 59.830 50.000 19.86 0.00 0.00 4.55
53 54 0.171007 AGCGCCAAATTTGATGTCCG 59.829 50.000 19.86 13.36 0.00 4.79
54 55 2.262211 GAAGCGCCAAATTTGATGTCC 58.738 47.619 19.86 3.42 0.00 4.02
55 56 2.919229 CTGAAGCGCCAAATTTGATGTC 59.081 45.455 19.86 9.41 0.00 3.06
56 57 2.353011 CCTGAAGCGCCAAATTTGATGT 60.353 45.455 19.86 0.00 0.00 3.06
57 58 2.094597 TCCTGAAGCGCCAAATTTGATG 60.095 45.455 19.86 11.83 0.00 3.07
58 59 2.170166 TCCTGAAGCGCCAAATTTGAT 58.830 42.857 19.86 0.00 0.00 2.57
59 60 1.614996 TCCTGAAGCGCCAAATTTGA 58.385 45.000 19.86 0.00 0.00 2.69
60 61 2.660189 ATCCTGAAGCGCCAAATTTG 57.340 45.000 11.40 11.40 0.00 2.32
61 62 2.415893 CGAATCCTGAAGCGCCAAATTT 60.416 45.455 2.29 0.00 0.00 1.82
62 63 1.133025 CGAATCCTGAAGCGCCAAATT 59.867 47.619 2.29 0.00 0.00 1.82
63 64 0.734889 CGAATCCTGAAGCGCCAAAT 59.265 50.000 2.29 0.00 0.00 2.32
64 65 1.922135 GCGAATCCTGAAGCGCCAAA 61.922 55.000 2.29 0.00 43.33 3.28
65 66 2.398554 GCGAATCCTGAAGCGCCAA 61.399 57.895 2.29 0.00 43.33 4.52
66 67 2.819595 GCGAATCCTGAAGCGCCA 60.820 61.111 2.29 0.00 43.33 5.69
69 70 0.572590 CGTAAGCGAATCCTGAAGCG 59.427 55.000 0.00 0.00 41.33 4.68
70 71 1.641577 ACGTAAGCGAATCCTGAAGC 58.358 50.000 0.00 0.00 45.62 3.86
71 72 4.030134 ACTACGTAAGCGAATCCTGAAG 57.970 45.455 0.00 0.00 45.62 3.02
72 73 4.445452 AACTACGTAAGCGAATCCTGAA 57.555 40.909 0.00 0.00 45.62 3.02
73 74 4.445452 AAACTACGTAAGCGAATCCTGA 57.555 40.909 0.00 0.00 45.62 3.86
74 75 4.624024 TGAAAACTACGTAAGCGAATCCTG 59.376 41.667 0.00 0.00 45.62 3.86
75 76 4.813027 TGAAAACTACGTAAGCGAATCCT 58.187 39.130 0.00 0.00 45.62 3.24
76 77 5.520022 TTGAAAACTACGTAAGCGAATCC 57.480 39.130 0.00 0.00 45.62 3.01
77 78 5.013859 GCTTGAAAACTACGTAAGCGAATC 58.986 41.667 0.00 0.00 45.62 2.52
78 79 4.449743 TGCTTGAAAACTACGTAAGCGAAT 59.550 37.500 11.21 0.00 44.90 3.34
79 80 3.803231 TGCTTGAAAACTACGTAAGCGAA 59.197 39.130 11.21 0.00 44.90 4.70
80 81 3.382855 TGCTTGAAAACTACGTAAGCGA 58.617 40.909 11.21 0.55 44.90 4.93
81 82 3.781341 TGCTTGAAAACTACGTAAGCG 57.219 42.857 11.21 0.00 44.90 4.68
82 83 6.623743 CGAATATGCTTGAAAACTACGTAAGC 59.376 38.462 9.48 9.48 42.92 3.09
84 85 7.461807 CGACGAATATGCTTGAAAACTACGTAA 60.462 37.037 0.00 0.00 0.00 3.18
85 86 6.021232 CGACGAATATGCTTGAAAACTACGTA 60.021 38.462 0.00 0.00 0.00 3.57
86 87 5.220154 CGACGAATATGCTTGAAAACTACGT 60.220 40.000 0.00 0.00 0.00 3.57
87 88 5.181084 CGACGAATATGCTTGAAAACTACG 58.819 41.667 0.00 0.00 0.00 3.51
88 89 5.490213 CCGACGAATATGCTTGAAAACTAC 58.510 41.667 0.00 0.00 0.00 2.73
89 90 4.033587 GCCGACGAATATGCTTGAAAACTA 59.966 41.667 0.00 0.00 0.00 2.24
90 91 3.181510 GCCGACGAATATGCTTGAAAACT 60.182 43.478 0.00 0.00 0.00 2.66
91 92 3.098636 GCCGACGAATATGCTTGAAAAC 58.901 45.455 0.00 0.00 0.00 2.43
92 93 2.744741 TGCCGACGAATATGCTTGAAAA 59.255 40.909 0.00 0.00 0.00 2.29
93 94 2.351418 CTGCCGACGAATATGCTTGAAA 59.649 45.455 0.00 0.00 0.00 2.69
94 95 1.933181 CTGCCGACGAATATGCTTGAA 59.067 47.619 0.00 0.00 0.00 2.69
95 96 1.134818 ACTGCCGACGAATATGCTTGA 60.135 47.619 0.00 0.00 0.00 3.02
96 97 1.258982 GACTGCCGACGAATATGCTTG 59.741 52.381 0.00 0.00 0.00 4.01
97 98 1.571919 GACTGCCGACGAATATGCTT 58.428 50.000 0.00 0.00 0.00 3.91
98 99 0.249489 GGACTGCCGACGAATATGCT 60.249 55.000 0.00 0.00 0.00 3.79
99 100 0.529773 TGGACTGCCGACGAATATGC 60.530 55.000 0.00 0.00 36.79 3.14
100 101 1.934589 TTGGACTGCCGACGAATATG 58.065 50.000 0.00 0.00 36.79 1.78
101 102 2.483876 CATTGGACTGCCGACGAATAT 58.516 47.619 0.00 0.00 36.79 1.28
102 103 1.934589 CATTGGACTGCCGACGAATA 58.065 50.000 0.00 0.00 36.79 1.75
103 104 1.369091 GCATTGGACTGCCGACGAAT 61.369 55.000 0.00 0.00 36.10 3.34
104 105 2.032634 GCATTGGACTGCCGACGAA 61.033 57.895 0.00 0.00 36.10 3.85
105 106 2.434185 GCATTGGACTGCCGACGA 60.434 61.111 0.00 0.00 36.10 4.20
106 107 1.577328 AAAGCATTGGACTGCCGACG 61.577 55.000 0.00 0.00 43.33 5.12
107 108 1.130561 GTAAAGCATTGGACTGCCGAC 59.869 52.381 0.00 0.00 43.33 4.79
108 109 1.448985 GTAAAGCATTGGACTGCCGA 58.551 50.000 0.00 0.00 43.33 5.54
109 110 0.451783 GGTAAAGCATTGGACTGCCG 59.548 55.000 0.00 0.00 43.33 5.69
110 111 1.745653 GAGGTAAAGCATTGGACTGCC 59.254 52.381 0.00 0.00 43.33 4.85
111 112 1.745653 GGAGGTAAAGCATTGGACTGC 59.254 52.381 0.00 0.00 42.62 4.40
112 113 3.356529 AGGAGGTAAAGCATTGGACTG 57.643 47.619 0.00 0.00 0.00 3.51
113 114 4.388577 AAAGGAGGTAAAGCATTGGACT 57.611 40.909 0.00 0.00 0.00 3.85
114 115 5.468540 AAAAAGGAGGTAAAGCATTGGAC 57.531 39.130 0.00 0.00 0.00 4.02
133 134 9.998106 AGAGTTCATACAAGACTTAGCTAAAAA 57.002 29.630 7.74 0.00 0.00 1.94
136 137 9.463902 ACTAGAGTTCATACAAGACTTAGCTAA 57.536 33.333 5.94 5.94 0.00 3.09
137 138 8.894731 CACTAGAGTTCATACAAGACTTAGCTA 58.105 37.037 0.00 0.00 0.00 3.32
138 139 7.147983 CCACTAGAGTTCATACAAGACTTAGCT 60.148 40.741 0.00 0.00 0.00 3.32
139 140 6.975772 CCACTAGAGTTCATACAAGACTTAGC 59.024 42.308 0.00 0.00 0.00 3.09
140 141 8.057536 ACCACTAGAGTTCATACAAGACTTAG 57.942 38.462 0.00 0.00 0.00 2.18
141 142 7.889073 AGACCACTAGAGTTCATACAAGACTTA 59.111 37.037 0.00 0.00 0.00 2.24
142 143 6.722129 AGACCACTAGAGTTCATACAAGACTT 59.278 38.462 0.00 0.00 0.00 3.01
143 144 6.151985 CAGACCACTAGAGTTCATACAAGACT 59.848 42.308 0.00 0.00 0.00 3.24
144 145 6.071840 ACAGACCACTAGAGTTCATACAAGAC 60.072 42.308 0.00 0.00 0.00 3.01
145 146 6.010850 ACAGACCACTAGAGTTCATACAAGA 58.989 40.000 0.00 0.00 0.00 3.02
146 147 6.096036 CACAGACCACTAGAGTTCATACAAG 58.904 44.000 0.00 0.00 0.00 3.16
147 148 5.538813 ACACAGACCACTAGAGTTCATACAA 59.461 40.000 0.00 0.00 0.00 2.41
148 149 5.048013 CACACAGACCACTAGAGTTCATACA 60.048 44.000 0.00 0.00 0.00 2.29
149 150 5.183331 TCACACAGACCACTAGAGTTCATAC 59.817 44.000 0.00 0.00 0.00 2.39
150 151 5.321927 TCACACAGACCACTAGAGTTCATA 58.678 41.667 0.00 0.00 0.00 2.15
151 152 4.152647 TCACACAGACCACTAGAGTTCAT 58.847 43.478 0.00 0.00 0.00 2.57
152 153 3.562182 TCACACAGACCACTAGAGTTCA 58.438 45.455 0.00 0.00 0.00 3.18
153 154 3.821600 TCTCACACAGACCACTAGAGTTC 59.178 47.826 0.00 0.00 0.00 3.01
154 155 3.570550 GTCTCACACAGACCACTAGAGTT 59.429 47.826 0.00 0.00 45.47 3.01
155 156 3.150767 GTCTCACACAGACCACTAGAGT 58.849 50.000 0.00 0.00 45.47 3.24
156 157 3.840890 GTCTCACACAGACCACTAGAG 57.159 52.381 0.00 0.00 45.47 2.43
165 166 5.854010 AGTTACAAAGAGTCTCACACAGA 57.146 39.130 1.94 0.00 0.00 3.41
166 167 7.148641 ACATAGTTACAAAGAGTCTCACACAG 58.851 38.462 1.94 0.00 0.00 3.66
167 168 7.050970 ACATAGTTACAAAGAGTCTCACACA 57.949 36.000 1.94 0.00 0.00 3.72
168 169 7.569591 GCAACATAGTTACAAAGAGTCTCACAC 60.570 40.741 1.94 0.00 0.00 3.82
169 170 6.423905 GCAACATAGTTACAAAGAGTCTCACA 59.576 38.462 1.94 0.00 0.00 3.58
170 171 6.647067 AGCAACATAGTTACAAAGAGTCTCAC 59.353 38.462 1.94 0.00 0.00 3.51
171 172 6.759272 AGCAACATAGTTACAAAGAGTCTCA 58.241 36.000 1.94 0.00 0.00 3.27
172 173 7.385205 TCAAGCAACATAGTTACAAAGAGTCTC 59.615 37.037 0.00 0.00 0.00 3.36
173 174 7.217200 TCAAGCAACATAGTTACAAAGAGTCT 58.783 34.615 0.00 0.00 0.00 3.24
174 175 7.421530 TCAAGCAACATAGTTACAAAGAGTC 57.578 36.000 0.00 0.00 0.00 3.36
175 176 7.986085 ATCAAGCAACATAGTTACAAAGAGT 57.014 32.000 0.00 0.00 0.00 3.24
185 186 9.533253 GGCATTTTATAAATCAAGCAACATAGT 57.467 29.630 0.00 0.00 0.00 2.12
186 187 8.693504 CGGCATTTTATAAATCAAGCAACATAG 58.306 33.333 0.00 0.00 0.00 2.23
187 188 8.409371 TCGGCATTTTATAAATCAAGCAACATA 58.591 29.630 0.00 0.00 0.00 2.29
188 189 7.222611 GTCGGCATTTTATAAATCAAGCAACAT 59.777 33.333 0.00 0.00 0.00 2.71
189 190 6.529829 GTCGGCATTTTATAAATCAAGCAACA 59.470 34.615 0.00 0.00 0.00 3.33
190 191 6.019881 GGTCGGCATTTTATAAATCAAGCAAC 60.020 38.462 0.00 4.18 0.00 4.17
191 192 6.039616 GGTCGGCATTTTATAAATCAAGCAA 58.960 36.000 0.00 0.00 0.00 3.91
192 193 5.359576 AGGTCGGCATTTTATAAATCAAGCA 59.640 36.000 0.00 0.00 0.00 3.91
193 194 5.831997 AGGTCGGCATTTTATAAATCAAGC 58.168 37.500 0.00 1.61 0.00 4.01
194 195 7.257722 ACAAGGTCGGCATTTTATAAATCAAG 58.742 34.615 0.00 0.00 0.00 3.02
195 196 7.164230 ACAAGGTCGGCATTTTATAAATCAA 57.836 32.000 0.00 0.00 0.00 2.57
196 197 6.183360 GGACAAGGTCGGCATTTTATAAATCA 60.183 38.462 0.00 0.00 32.65 2.57
197 198 6.183360 TGGACAAGGTCGGCATTTTATAAATC 60.183 38.462 0.00 0.00 32.65 2.17
198 199 5.654650 TGGACAAGGTCGGCATTTTATAAAT 59.345 36.000 0.00 0.00 32.65 1.40
199 200 5.010933 TGGACAAGGTCGGCATTTTATAAA 58.989 37.500 0.00 0.00 32.65 1.40
200 201 4.590918 TGGACAAGGTCGGCATTTTATAA 58.409 39.130 0.00 0.00 32.65 0.98
201 202 4.080807 TCTGGACAAGGTCGGCATTTTATA 60.081 41.667 0.00 0.00 32.65 0.98
202 203 3.016736 CTGGACAAGGTCGGCATTTTAT 58.983 45.455 0.00 0.00 32.65 1.40
203 204 2.039216 TCTGGACAAGGTCGGCATTTTA 59.961 45.455 0.00 0.00 32.65 1.52
204 205 1.202879 TCTGGACAAGGTCGGCATTTT 60.203 47.619 0.00 0.00 32.65 1.82
205 206 0.400213 TCTGGACAAGGTCGGCATTT 59.600 50.000 0.00 0.00 32.65 2.32
206 207 0.400213 TTCTGGACAAGGTCGGCATT 59.600 50.000 0.00 0.00 32.65 3.56
207 208 0.400213 TTTCTGGACAAGGTCGGCAT 59.600 50.000 0.00 0.00 32.65 4.40
208 209 0.181587 TTTTCTGGACAAGGTCGGCA 59.818 50.000 0.00 0.00 32.65 5.69
209 210 1.314730 TTTTTCTGGACAAGGTCGGC 58.685 50.000 0.00 0.00 32.65 5.54
227 228 3.317993 CCAGATGACCGGAAGTTGTTTTT 59.682 43.478 9.46 0.00 0.00 1.94
228 229 2.884639 CCAGATGACCGGAAGTTGTTTT 59.115 45.455 9.46 0.00 0.00 2.43
229 230 2.105821 TCCAGATGACCGGAAGTTGTTT 59.894 45.455 9.46 0.00 0.00 2.83
230 231 1.697432 TCCAGATGACCGGAAGTTGTT 59.303 47.619 9.46 0.00 0.00 2.83
231 232 1.348064 TCCAGATGACCGGAAGTTGT 58.652 50.000 9.46 0.00 0.00 3.32
232 233 2.472695 TTCCAGATGACCGGAAGTTG 57.527 50.000 9.46 0.00 36.36 3.16
233 234 2.637872 TCTTTCCAGATGACCGGAAGTT 59.362 45.455 9.46 0.00 42.14 2.66
234 235 2.257207 TCTTTCCAGATGACCGGAAGT 58.743 47.619 9.46 0.00 42.14 3.01
235 236 3.334583 TTCTTTCCAGATGACCGGAAG 57.665 47.619 9.46 0.00 42.14 3.46
236 237 3.780804 TTTCTTTCCAGATGACCGGAA 57.219 42.857 9.46 0.00 39.54 4.30
237 238 5.429681 TTATTTCTTTCCAGATGACCGGA 57.570 39.130 9.46 0.00 0.00 5.14
238 239 5.648092 AGTTTATTTCTTTCCAGATGACCGG 59.352 40.000 0.00 0.00 0.00 5.28
239 240 6.743575 AGTTTATTTCTTTCCAGATGACCG 57.256 37.500 0.00 0.00 0.00 4.79
240 241 9.841880 GTTTAGTTTATTTCTTTCCAGATGACC 57.158 33.333 0.00 0.00 0.00 4.02
247 248 9.511272 GGGACTAGTTTAGTTTATTTCTTTCCA 57.489 33.333 0.00 0.00 39.59 3.53
248 249 9.511272 TGGGACTAGTTTAGTTTATTTCTTTCC 57.489 33.333 0.00 0.00 39.59 3.13
252 253 9.462606 CCATTGGGACTAGTTTAGTTTATTTCT 57.537 33.333 0.00 0.00 39.59 2.52
253 254 8.188799 GCCATTGGGACTAGTTTAGTTTATTTC 58.811 37.037 4.53 0.00 39.59 2.17
254 255 7.123697 GGCCATTGGGACTAGTTTAGTTTATTT 59.876 37.037 4.53 0.00 40.08 1.40
255 256 6.605995 GGCCATTGGGACTAGTTTAGTTTATT 59.394 38.462 4.53 0.00 40.08 1.40
256 257 6.127101 GGCCATTGGGACTAGTTTAGTTTAT 58.873 40.000 4.53 0.00 40.08 1.40
257 258 5.014333 TGGCCATTGGGACTAGTTTAGTTTA 59.986 40.000 0.00 0.00 45.45 2.01
258 259 4.202631 TGGCCATTGGGACTAGTTTAGTTT 60.203 41.667 0.00 0.00 45.45 2.66
259 260 3.332485 TGGCCATTGGGACTAGTTTAGTT 59.668 43.478 0.00 0.00 45.45 2.24
260 261 2.916934 TGGCCATTGGGACTAGTTTAGT 59.083 45.455 0.00 0.00 45.45 2.24
261 262 3.279434 GTGGCCATTGGGACTAGTTTAG 58.721 50.000 9.72 0.00 45.45 1.85
262 263 2.645297 TGTGGCCATTGGGACTAGTTTA 59.355 45.455 9.72 0.00 45.45 2.01
263 264 1.427368 TGTGGCCATTGGGACTAGTTT 59.573 47.619 9.72 0.00 45.45 2.66
264 265 1.072266 TGTGGCCATTGGGACTAGTT 58.928 50.000 9.72 0.00 45.45 2.24
265 266 1.072266 TTGTGGCCATTGGGACTAGT 58.928 50.000 9.72 0.00 45.45 2.57
266 267 1.463674 GTTGTGGCCATTGGGACTAG 58.536 55.000 9.72 0.00 45.45 2.57
267 268 0.039035 GGTTGTGGCCATTGGGACTA 59.961 55.000 9.72 0.00 45.45 2.59
268 269 1.228862 GGTTGTGGCCATTGGGACT 60.229 57.895 9.72 0.00 45.45 3.85
269 270 2.282783 GGGTTGTGGCCATTGGGAC 61.283 63.158 9.72 3.45 45.44 4.46
270 271 2.119391 GGGTTGTGGCCATTGGGA 59.881 61.111 9.72 0.00 35.59 4.37
271 272 2.203758 TGGGTTGTGGCCATTGGG 60.204 61.111 9.72 0.00 37.18 4.12
272 273 2.929903 CGTGGGTTGTGGCCATTGG 61.930 63.158 9.72 0.00 0.00 3.16
273 274 2.199652 ACGTGGGTTGTGGCCATTG 61.200 57.895 9.72 0.00 0.00 2.82
274 275 2.197324 ACGTGGGTTGTGGCCATT 59.803 55.556 9.72 0.00 0.00 3.16
275 276 2.424842 ATCACGTGGGTTGTGGCCAT 62.425 55.000 17.00 0.00 37.91 4.40
276 277 3.126703 ATCACGTGGGTTGTGGCCA 62.127 57.895 17.00 0.00 37.91 5.36
277 278 2.282180 ATCACGTGGGTTGTGGCC 60.282 61.111 17.00 0.00 37.91 5.36
278 279 0.604243 TACATCACGTGGGTTGTGGC 60.604 55.000 17.00 0.00 37.91 5.01
279 280 2.107950 ATACATCACGTGGGTTGTGG 57.892 50.000 17.00 0.40 37.91 4.17
280 281 7.375834 ACTATATATACATCACGTGGGTTGTG 58.624 38.462 17.00 9.57 38.70 3.33
281 282 7.309621 GGACTATATATACATCACGTGGGTTGT 60.310 40.741 17.00 18.14 0.00 3.32
282 283 7.033791 GGACTATATATACATCACGTGGGTTG 58.966 42.308 17.00 13.38 0.00 3.77
283 284 6.722590 TGGACTATATATACATCACGTGGGTT 59.277 38.462 17.00 2.22 0.00 4.11
284 285 6.250711 TGGACTATATATACATCACGTGGGT 58.749 40.000 17.00 16.44 0.00 4.51
285 286 6.602009 TCTGGACTATATATACATCACGTGGG 59.398 42.308 17.00 11.09 0.00 4.61
286 287 7.625828 TCTGGACTATATATACATCACGTGG 57.374 40.000 17.00 2.57 0.00 4.94
287 288 9.508567 CATTCTGGACTATATATACATCACGTG 57.491 37.037 9.94 9.94 0.00 4.49
288 289 8.191446 GCATTCTGGACTATATATACATCACGT 58.809 37.037 0.00 0.00 0.00 4.49
289 290 7.649705 GGCATTCTGGACTATATATACATCACG 59.350 40.741 0.00 0.00 0.00 4.35
290 291 7.928706 GGGCATTCTGGACTATATATACATCAC 59.071 40.741 0.00 0.00 0.00 3.06
291 292 7.071196 GGGGCATTCTGGACTATATATACATCA 59.929 40.741 0.00 0.00 0.00 3.07
292 293 7.071196 TGGGGCATTCTGGACTATATATACATC 59.929 40.741 0.00 0.00 0.00 3.06
293 294 6.908593 TGGGGCATTCTGGACTATATATACAT 59.091 38.462 0.00 0.00 0.00 2.29
294 295 6.156256 GTGGGGCATTCTGGACTATATATACA 59.844 42.308 0.00 0.00 0.00 2.29
295 296 6.583562 GTGGGGCATTCTGGACTATATATAC 58.416 44.000 0.00 0.00 0.00 1.47
296 297 5.362717 CGTGGGGCATTCTGGACTATATATA 59.637 44.000 0.00 0.00 0.00 0.86
297 298 4.162320 CGTGGGGCATTCTGGACTATATAT 59.838 45.833 0.00 0.00 0.00 0.86
298 299 3.513912 CGTGGGGCATTCTGGACTATATA 59.486 47.826 0.00 0.00 0.00 0.86
299 300 2.303022 CGTGGGGCATTCTGGACTATAT 59.697 50.000 0.00 0.00 0.00 0.86
300 301 1.691976 CGTGGGGCATTCTGGACTATA 59.308 52.381 0.00 0.00 0.00 1.31
301 302 0.469917 CGTGGGGCATTCTGGACTAT 59.530 55.000 0.00 0.00 0.00 2.12
302 303 0.907704 ACGTGGGGCATTCTGGACTA 60.908 55.000 0.00 0.00 0.00 2.59
303 304 2.224159 ACGTGGGGCATTCTGGACT 61.224 57.895 0.00 0.00 0.00 3.85
304 305 2.040544 CACGTGGGGCATTCTGGAC 61.041 63.158 7.95 0.00 0.00 4.02
305 306 1.773856 TTCACGTGGGGCATTCTGGA 61.774 55.000 17.00 0.00 0.00 3.86
306 307 1.303236 TTCACGTGGGGCATTCTGG 60.303 57.895 17.00 0.00 0.00 3.86
307 308 0.321564 TCTTCACGTGGGGCATTCTG 60.322 55.000 17.00 0.00 0.00 3.02
308 309 0.400213 TTCTTCACGTGGGGCATTCT 59.600 50.000 17.00 0.00 0.00 2.40
309 310 1.243902 TTTCTTCACGTGGGGCATTC 58.756 50.000 17.00 0.00 0.00 2.67
310 311 1.698506 TTTTCTTCACGTGGGGCATT 58.301 45.000 17.00 0.00 0.00 3.56
311 312 1.698506 TTTTTCTTCACGTGGGGCAT 58.301 45.000 17.00 0.00 0.00 4.40
312 313 3.192799 TTTTTCTTCACGTGGGGCA 57.807 47.368 17.00 0.00 0.00 5.36
327 328 3.056328 GCCTCGCTCGGCCTTTTT 61.056 61.111 0.00 0.00 44.41 1.94
334 335 1.226717 GTAAGTCAGCCTCGCTCGG 60.227 63.158 0.00 0.00 36.40 4.63
335 336 1.583967 CGTAAGTCAGCCTCGCTCG 60.584 63.158 0.00 0.00 36.40 5.03
336 337 4.386245 CGTAAGTCAGCCTCGCTC 57.614 61.111 0.00 0.00 36.40 5.03
362 363 8.889717 CCGGTTGATACAACAATTTAGACTTAT 58.110 33.333 14.89 0.00 32.36 1.73
363 364 8.095792 TCCGGTTGATACAACAATTTAGACTTA 58.904 33.333 14.89 0.00 32.36 2.24
364 365 6.938030 TCCGGTTGATACAACAATTTAGACTT 59.062 34.615 14.89 0.00 32.36 3.01
365 366 6.469410 TCCGGTTGATACAACAATTTAGACT 58.531 36.000 14.89 0.00 32.36 3.24
366 367 6.730960 TCCGGTTGATACAACAATTTAGAC 57.269 37.500 14.89 0.00 32.36 2.59
367 368 6.882140 ACATCCGGTTGATACAACAATTTAGA 59.118 34.615 19.34 4.33 30.56 2.10
368 369 7.083875 ACATCCGGTTGATACAACAATTTAG 57.916 36.000 19.34 4.56 30.56 1.85
369 370 7.455641 AACATCCGGTTGATACAACAATTTA 57.544 32.000 19.34 0.00 38.60 1.40
370 371 5.975693 ACATCCGGTTGATACAACAATTT 57.024 34.783 19.34 0.00 30.56 1.82
371 372 5.975693 AACATCCGGTTGATACAACAATT 57.024 34.783 19.34 0.00 38.60 2.32
383 384 1.760029 ACAAAAAGGCAACATCCGGTT 59.240 42.857 0.00 0.00 41.47 4.44
384 385 1.408969 ACAAAAAGGCAACATCCGGT 58.591 45.000 0.00 0.00 41.41 5.28
385 386 3.651803 TTACAAAAAGGCAACATCCGG 57.348 42.857 0.00 0.00 41.41 5.14
386 387 3.423867 CGTTTACAAAAAGGCAACATCCG 59.576 43.478 0.00 0.00 41.41 4.18
387 388 4.208253 CACGTTTACAAAAAGGCAACATCC 59.792 41.667 0.00 0.00 41.41 3.51
388 389 4.317769 GCACGTTTACAAAAAGGCAACATC 60.318 41.667 0.00 0.00 41.41 3.06
389 390 3.553917 GCACGTTTACAAAAAGGCAACAT 59.446 39.130 0.00 0.00 41.41 2.71
390 391 2.924290 GCACGTTTACAAAAAGGCAACA 59.076 40.909 0.00 0.00 41.41 3.33
391 392 2.035259 CGCACGTTTACAAAAAGGCAAC 60.035 45.455 0.00 0.00 34.54 4.17
392 393 2.186076 CGCACGTTTACAAAAAGGCAA 58.814 42.857 0.00 0.00 34.54 4.52
393 394 1.132643 ACGCACGTTTACAAAAAGGCA 59.867 42.857 0.00 0.00 34.54 4.75
394 395 1.776897 GACGCACGTTTACAAAAAGGC 59.223 47.619 0.00 0.00 34.54 4.35
395 396 3.001939 AGAGACGCACGTTTACAAAAAGG 59.998 43.478 0.00 0.00 36.70 3.11
396 397 4.191662 AGAGACGCACGTTTACAAAAAG 57.808 40.909 0.00 0.00 0.00 2.27
397 398 5.910637 ATAGAGACGCACGTTTACAAAAA 57.089 34.783 0.00 0.00 0.00 1.94
398 399 6.642131 AGTTATAGAGACGCACGTTTACAAAA 59.358 34.615 0.00 0.00 0.00 2.44
399 400 6.151691 AGTTATAGAGACGCACGTTTACAAA 58.848 36.000 0.00 0.00 0.00 2.83
400 401 5.702865 AGTTATAGAGACGCACGTTTACAA 58.297 37.500 0.00 0.00 0.00 2.41
401 402 5.122869 AGAGTTATAGAGACGCACGTTTACA 59.877 40.000 0.00 0.00 0.00 2.41
402 403 5.567552 AGAGTTATAGAGACGCACGTTTAC 58.432 41.667 0.00 0.00 0.00 2.01
403 404 5.808042 AGAGTTATAGAGACGCACGTTTA 57.192 39.130 0.00 0.00 0.00 2.01
404 405 4.698583 AGAGTTATAGAGACGCACGTTT 57.301 40.909 0.00 0.00 0.00 3.60
405 406 4.874966 ACTAGAGTTATAGAGACGCACGTT 59.125 41.667 0.00 0.00 0.00 3.99
406 407 4.440880 ACTAGAGTTATAGAGACGCACGT 58.559 43.478 0.00 0.00 0.00 4.49
407 408 4.746115 AGACTAGAGTTATAGAGACGCACG 59.254 45.833 0.00 0.00 0.00 5.34
408 409 7.147312 TCTAGACTAGAGTTATAGAGACGCAC 58.853 42.308 8.17 0.00 0.00 5.34
409 410 7.287512 TCTAGACTAGAGTTATAGAGACGCA 57.712 40.000 8.17 0.00 0.00 5.24
410 411 9.294030 GTATCTAGACTAGAGTTATAGAGACGC 57.706 40.741 17.02 0.00 38.38 5.19
411 412 9.793252 GGTATCTAGACTAGAGTTATAGAGACG 57.207 40.741 17.02 0.00 38.41 4.18
439 440 8.960591 CCCTCAAAACAGAACTTCAATATATGT 58.039 33.333 0.00 0.00 0.00 2.29
440 441 9.177608 TCCCTCAAAACAGAACTTCAATATATG 57.822 33.333 0.00 0.00 0.00 1.78
441 442 9.927081 ATCCCTCAAAACAGAACTTCAATATAT 57.073 29.630 0.00 0.00 0.00 0.86
443 444 9.178758 GTATCCCTCAAAACAGAACTTCAATAT 57.821 33.333 0.00 0.00 0.00 1.28
444 445 7.610305 GGTATCCCTCAAAACAGAACTTCAATA 59.390 37.037 0.00 0.00 0.00 1.90
445 446 6.434340 GGTATCCCTCAAAACAGAACTTCAAT 59.566 38.462 0.00 0.00 0.00 2.57
446 447 5.768164 GGTATCCCTCAAAACAGAACTTCAA 59.232 40.000 0.00 0.00 0.00 2.69
447 448 5.313712 GGTATCCCTCAAAACAGAACTTCA 58.686 41.667 0.00 0.00 0.00 3.02
448 449 4.700692 GGGTATCCCTCAAAACAGAACTTC 59.299 45.833 0.00 0.00 41.34 3.01
449 450 4.105697 TGGGTATCCCTCAAAACAGAACTT 59.894 41.667 6.38 0.00 45.70 2.66
450 451 3.655777 TGGGTATCCCTCAAAACAGAACT 59.344 43.478 6.38 0.00 45.70 3.01
451 452 4.028993 TGGGTATCCCTCAAAACAGAAC 57.971 45.455 6.38 0.00 45.70 3.01
452 453 4.946160 ATGGGTATCCCTCAAAACAGAA 57.054 40.909 6.38 0.00 45.70 3.02
453 454 5.036916 ACTATGGGTATCCCTCAAAACAGA 58.963 41.667 6.38 0.00 45.70 3.41
454 455 5.373812 ACTATGGGTATCCCTCAAAACAG 57.626 43.478 6.38 0.00 45.70 3.16
455 456 5.491078 AGAACTATGGGTATCCCTCAAAACA 59.509 40.000 6.38 0.00 45.70 2.83
456 457 5.823045 CAGAACTATGGGTATCCCTCAAAAC 59.177 44.000 6.38 0.00 45.70 2.43
457 458 5.491078 ACAGAACTATGGGTATCCCTCAAAA 59.509 40.000 6.38 0.00 45.70 2.44
458 459 5.036916 ACAGAACTATGGGTATCCCTCAAA 58.963 41.667 6.38 0.00 45.70 2.69
459 460 4.631234 ACAGAACTATGGGTATCCCTCAA 58.369 43.478 6.38 0.00 45.70 3.02
460 461 4.078571 AGACAGAACTATGGGTATCCCTCA 60.079 45.833 6.38 0.00 45.70 3.86
461 462 4.484912 AGACAGAACTATGGGTATCCCTC 58.515 47.826 6.38 0.00 45.70 4.30
462 463 4.561254 AGACAGAACTATGGGTATCCCT 57.439 45.455 6.38 0.00 45.70 4.20
463 464 5.395611 AGTAGACAGAACTATGGGTATCCC 58.604 45.833 0.00 0.00 45.71 3.85
464 465 9.924010 ATATAGTAGACAGAACTATGGGTATCC 57.076 37.037 6.11 0.00 39.79 2.59
1771 1779 4.778143 ACGGCATGGAAGCGGACC 62.778 66.667 0.00 0.00 38.12 4.46
1846 1866 0.727398 GGGTCGAATCTTTGCCTTCG 59.273 55.000 0.00 0.00 44.18 3.79
1849 1869 1.303282 GGGGGTCGAATCTTTGCCT 59.697 57.895 0.00 0.00 0.00 4.75
1865 1885 1.987807 ATGCACCTGAATCGGAGGGG 61.988 60.000 0.00 0.00 37.03 4.79
1930 1978 2.398554 GCTGCACACCCGGTACATG 61.399 63.158 0.00 0.00 0.00 3.21
1932 1980 4.673298 CGCTGCACACCCGGTACA 62.673 66.667 0.00 0.00 0.00 2.90
1957 2005 2.456577 TCGATGGTGAGGAATCAGACA 58.543 47.619 0.00 0.00 0.00 3.41
1961 2009 3.432186 GGATGTTCGATGGTGAGGAATCA 60.432 47.826 0.00 0.00 0.00 2.57
1965 2013 0.830648 GGGATGTTCGATGGTGAGGA 59.169 55.000 0.00 0.00 0.00 3.71
2000 2048 2.779506 GGTTTGTCGGGTGAGAAGATT 58.220 47.619 0.00 0.00 0.00 2.40
2015 2063 0.179113 GGCATGTTATGGGCGGTTTG 60.179 55.000 0.00 0.00 0.00 2.93
2051 2102 4.767255 GTCCCACTGGCTGCGGAG 62.767 72.222 0.00 0.00 0.00 4.63
2059 2110 2.162681 GGATTGTTCTTGTCCCACTGG 58.837 52.381 0.00 0.00 0.00 4.00
2074 2125 4.565652 CCGTAGATAATTCCCTGGGGATTG 60.566 50.000 26.72 10.47 44.74 2.67
2105 2164 0.900421 TGATGCTGCTGCTGTAGAGT 59.100 50.000 17.00 0.00 40.48 3.24
2138 2197 0.686789 TGGCCCTGATGGTATGATCG 59.313 55.000 0.00 0.00 36.04 3.69
2145 2204 0.323725 GTGAACATGGCCCTGATGGT 60.324 55.000 15.66 2.96 36.04 3.55
2183 2242 2.047560 GTCCACTTTCCGTCCCCG 60.048 66.667 0.00 0.00 0.00 5.73
2190 2249 0.108804 TCGATGAGCGTCCACTTTCC 60.109 55.000 0.00 0.00 41.80 3.13
2191 2250 1.135373 TCTCGATGAGCGTCCACTTTC 60.135 52.381 0.00 0.00 41.80 2.62
2201 2260 1.402259 TCGAAAGTCCTCTCGATGAGC 59.598 52.381 6.42 0.00 39.07 4.26
2210 2269 0.236711 TCACGTCGTCGAAAGTCCTC 59.763 55.000 9.47 0.00 40.62 3.71
2219 2278 1.482955 CAAGTGCTTCACGTCGTCG 59.517 57.895 0.00 0.00 39.64 5.12
2222 2281 0.597637 ACTCCAAGTGCTTCACGTCG 60.598 55.000 0.00 0.00 39.64 5.12
2279 2506 1.228367 GATACTGCCAGCCCCCATG 60.228 63.158 0.00 0.00 0.00 3.66
2288 2515 0.983467 TGACCTGCAAGATACTGCCA 59.017 50.000 0.00 0.00 41.90 4.92
2291 2518 2.862536 CGTGATGACCTGCAAGATACTG 59.137 50.000 0.00 0.00 34.07 2.74
2329 2556 0.179067 GACCAACAAGTCACCGGTGA 60.179 55.000 33.23 33.23 36.73 4.02
2373 2600 1.367599 CGGGACTCGAAGACGTAGCT 61.368 60.000 0.00 0.00 42.43 3.32
2393 2620 3.272334 GCCCATAACAGCTCGCCG 61.272 66.667 0.00 0.00 0.00 6.46
2427 2654 0.319211 TCCTGGTACGAAACACTGCG 60.319 55.000 0.00 0.00 0.00 5.18
2428 2655 1.798813 CTTCCTGGTACGAAACACTGC 59.201 52.381 0.00 0.00 0.00 4.40
2479 2706 2.303022 TCCTCCTCTAGGTTTTGCACTG 59.697 50.000 0.00 0.00 46.62 3.66
2480 2707 2.569404 CTCCTCCTCTAGGTTTTGCACT 59.431 50.000 0.00 0.00 46.62 4.40
2486 2713 1.960953 GCGTCCTCCTCCTCTAGGTTT 60.961 57.143 0.00 0.00 46.62 3.27
2539 2769 2.421424 GCCAGGCTACACTCATCTTTTG 59.579 50.000 3.29 0.00 0.00 2.44
2723 2953 2.854777 CTCTACGAAATCAGTCTTGGCG 59.145 50.000 0.00 0.00 0.00 5.69
2857 3098 8.474025 TGTGACCACAAAAGTTATGAAAGATTT 58.526 29.630 0.00 0.00 38.56 2.17
2861 3102 9.398170 CTTATGTGACCACAAAAGTTATGAAAG 57.602 33.333 6.95 0.00 45.41 2.62
2868 3109 7.875327 ACTAACTTATGTGACCACAAAAGTT 57.125 32.000 6.95 3.50 45.41 2.66
2870 3111 7.359765 CGGTACTAACTTATGTGACCACAAAAG 60.360 40.741 6.95 2.20 45.41 2.27
2891 3139 5.443261 GGTTAAACTTTTACACAGCGGTAC 58.557 41.667 0.00 0.00 0.00 3.34
2895 3143 4.823790 AGGGTTAAACTTTTACACAGCG 57.176 40.909 0.00 0.00 0.00 5.18
2905 3157 6.969993 TGCTTATGTTCAAGGGTTAAACTT 57.030 33.333 0.00 0.00 0.00 2.66
2954 3210 9.768215 TTCCTAATCCAAAAAGATTCAAGGTAT 57.232 29.630 0.00 0.00 37.62 2.73
2956 3212 8.491045 TTTCCTAATCCAAAAAGATTCAAGGT 57.509 30.769 0.00 0.00 37.62 3.50
2957 3213 9.591792 GATTTCCTAATCCAAAAAGATTCAAGG 57.408 33.333 0.00 0.00 37.62 3.61
2968 3225 7.829211 CACCTCTTAGTGATTTCCTAATCCAAA 59.171 37.037 0.00 0.00 40.34 3.28
2971 3228 5.760743 GCACCTCTTAGTGATTTCCTAATCC 59.239 44.000 0.00 0.00 40.34 3.01
2973 3230 6.313519 TGCACCTCTTAGTGATTTCCTAAT 57.686 37.500 0.00 0.00 40.34 1.73
2975 3232 5.338381 CCTTGCACCTCTTAGTGATTTCCTA 60.338 44.000 0.00 0.00 40.34 2.94
3031 3288 2.880963 CTAGACTAGCAACTGGAGCC 57.119 55.000 0.00 0.00 0.00 4.70
3046 3311 5.693555 CGAGATGTGAATAATGCTTGCTAGA 59.306 40.000 0.00 0.00 0.00 2.43
3050 3315 4.801147 TCGAGATGTGAATAATGCTTGC 57.199 40.909 0.00 0.00 0.00 4.01
3137 3402 3.520569 GCTTGCTGAAAACAAGTTCCAA 58.479 40.909 5.50 0.00 45.09 3.53
3146 3411 3.099574 GCCGCGCTTGCTGAAAAC 61.100 61.111 5.56 0.00 36.08 2.43
3152 3417 4.332637 CACTTTGCCGCGCTTGCT 62.333 61.111 17.83 0.00 36.08 3.91
3159 3424 1.497722 GCAGTAGACACTTTGCCGC 59.502 57.895 0.00 0.00 30.46 6.53
3170 3435 2.026915 TGTACAGTACCTCGGCAGTAGA 60.027 50.000 8.30 0.00 0.00 2.59
3174 3439 1.271379 TGTTGTACAGTACCTCGGCAG 59.729 52.381 8.30 0.00 0.00 4.85
3175 3440 1.330234 TGTTGTACAGTACCTCGGCA 58.670 50.000 8.30 0.00 0.00 5.69
3187 3452 5.106673 GGAGCACTTGGTATCTTTGTTGTAC 60.107 44.000 0.00 0.00 0.00 2.90
3191 3456 3.181434 TGGGAGCACTTGGTATCTTTGTT 60.181 43.478 0.00 0.00 0.00 2.83
3290 3555 2.414806 CTCGAGATTGCATCCATCCAG 58.585 52.381 6.58 0.00 0.00 3.86
3303 3568 0.739561 GACCAGCGTAACCTCGAGAT 59.260 55.000 15.71 4.86 0.00 2.75
3367 3632 7.172532 TCAAGGAACATGTAGTTGTGATGTTAC 59.827 37.037 0.00 0.00 41.51 2.50
3387 3652 6.040955 ACATATACGAGCAAGAAGATCAAGGA 59.959 38.462 0.00 0.00 31.47 3.36
3409 3674 9.915629 GTAATAGACGAATCTTCTTGGATACAT 57.084 33.333 0.00 0.00 41.08 2.29
3483 3748 5.105351 TGGTCTGACATTCTACACAATCGAT 60.105 40.000 10.38 0.00 0.00 3.59
3490 3755 8.467598 TCTTAGTTATGGTCTGACATTCTACAC 58.532 37.037 10.38 0.00 32.39 2.90
3547 3828 9.143631 GATTGCAAAATTAAGCTCATTGTAACT 57.856 29.630 1.71 0.00 30.46 2.24
3688 3969 0.107703 TGGCGATGATCCTCACCAAC 60.108 55.000 5.37 0.00 0.00 3.77
3692 3973 1.202568 TGTCATGGCGATGATCCTCAC 60.203 52.381 14.85 2.07 40.78 3.51
3703 3984 1.518056 AAGTGCAGGTTGTCATGGCG 61.518 55.000 0.00 0.00 0.00 5.69
3745 4026 1.113517 TAGGCCCGAGAGTATGCACC 61.114 60.000 0.00 0.00 0.00 5.01
3853 4134 1.071699 CGAGACAAGGAAGTTTGGGGA 59.928 52.381 0.00 0.00 32.32 4.81
3874 4155 0.463654 TCCCAATCGGCATGCTACAC 60.464 55.000 18.92 0.00 0.00 2.90
3889 4170 5.387788 CAGGGAACAATCATATCAATCCCA 58.612 41.667 10.34 0.00 46.05 4.37
3937 4218 3.240134 GAAGGCTGCCTCCGACACA 62.240 63.158 23.61 0.00 30.89 3.72
4026 4307 0.538977 AGCATGCTCTGTGCCTGTTT 60.539 50.000 16.30 0.00 43.50 2.83
4066 4347 9.632807 TTATATGTGGTGTAATTTTGCAAAGAC 57.367 29.630 12.41 12.06 0.00 3.01
4108 4389 6.500910 AGGTTGGTCGAAGTTTACAAAATTC 58.499 36.000 5.11 5.11 39.02 2.17
4123 4404 8.657074 TCATATTGTTTATAGAAGGTTGGTCG 57.343 34.615 0.00 0.00 0.00 4.79
4200 4488 4.757149 GCTGGTGAGTACATTTCAACTCTT 59.243 41.667 0.00 0.00 42.17 2.85
4202 4490 4.319177 AGCTGGTGAGTACATTTCAACTC 58.681 43.478 0.00 0.00 42.04 3.01
4226 4514 2.936498 CGCCGATATTCTCACCAAACTT 59.064 45.455 0.00 0.00 0.00 2.66
4234 4522 0.828022 ACCCAACGCCGATATTCTCA 59.172 50.000 0.00 0.00 0.00 3.27
4325 4613 2.282391 TTCCTGCTTGCCGTGCAT 60.282 55.556 0.00 0.00 38.76 3.96
4348 4636 1.690633 GCCACCCTCCTCATCTGGA 60.691 63.158 0.00 0.00 34.52 3.86
4429 4717 4.884257 GGAGCGGCGGCGATACAA 62.884 66.667 36.87 0.00 46.35 2.41
4466 4754 2.671070 GGGCTGCTGTTAGAGGCA 59.329 61.111 0.00 0.00 36.50 4.75


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.