Multiple sequence alignment - TraesCS6B01G018500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G018500 chr6B 100.000 4211 0 0 1 4211 11536907 11541117 0.000000e+00 7777.0
1 TraesCS6B01G018500 chr6B 82.051 117 19 2 3977 4092 12549283 12549168 9.640000e-17 99.0
2 TraesCS6B01G018500 chr6A 90.245 2163 166 26 1817 3958 5604221 5606359 0.000000e+00 2784.0
3 TraesCS6B01G018500 chr6A 91.658 995 81 2 1817 2810 5775547 5776540 0.000000e+00 1376.0
4 TraesCS6B01G018500 chr6A 91.558 995 82 2 1817 2810 5672919 5673912 0.000000e+00 1371.0
5 TraesCS6B01G018500 chr6A 88.782 1141 61 37 617 1735 5602522 5603617 0.000000e+00 1336.0
6 TraesCS6B01G018500 chr6A 88.282 1135 65 30 617 1735 5671232 5672314 0.000000e+00 1297.0
7 TraesCS6B01G018500 chr6A 88.018 1135 69 30 617 1735 5773872 5774955 0.000000e+00 1280.0
8 TraesCS6B01G018500 chr6A 89.307 851 63 16 3385 4211 5688812 5689658 0.000000e+00 1042.0
9 TraesCS6B01G018500 chr6A 93.814 582 34 2 2806 3387 5785310 5785889 0.000000e+00 874.0
10 TraesCS6B01G018500 chr6A 93.299 582 36 3 2806 3387 5682682 5683260 0.000000e+00 856.0
11 TraesCS6B01G018500 chr6A 87.629 388 27 10 3844 4211 5791572 5791958 8.360000e-117 431.0
12 TraesCS6B01G018500 chr6A 90.845 284 26 0 3385 3668 5791278 5791561 8.540000e-102 381.0
13 TraesCS6B01G018500 chr6A 82.000 100 17 1 3977 4076 6395300 6395202 2.700000e-12 84.2
14 TraesCS6B01G018500 chr6D 90.408 2085 134 30 1813 3863 6275245 6277297 0.000000e+00 2682.0
15 TraesCS6B01G018500 chr6D 89.132 1187 60 26 573 1735 6273896 6275037 0.000000e+00 1413.0
16 TraesCS6B01G018500 chr6D 91.367 417 27 4 1 411 6271326 6271739 2.840000e-156 562.0
17 TraesCS6B01G018500 chr6D 89.045 356 19 8 3873 4211 6305380 6305732 1.400000e-114 424.0
18 TraesCS6B01G018500 chr6D 90.840 131 9 2 406 536 6273456 6273583 5.600000e-39 172.0
19 TraesCS6B01G018500 chrUn 82.456 114 18 2 3977 4089 369446845 369446957 9.640000e-17 99.0
20 TraesCS6B01G018500 chrUn 80.342 117 21 2 3977 4092 76108672 76108557 2.090000e-13 87.9
21 TraesCS6B01G018500 chrUn 80.342 117 21 2 3977 4092 350828937 350828822 2.090000e-13 87.9
22 TraesCS6B01G018500 chrUn 97.059 34 1 0 3977 4010 380783437 380783404 1.640000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G018500 chr6B 11536907 11541117 4210 False 7777.00 7777 100.00000 1 4211 1 chr6B.!!$F1 4210
1 TraesCS6B01G018500 chr6A 5602522 5606359 3837 False 2060.00 2784 89.51350 617 3958 2 chr6A.!!$F4 3341
2 TraesCS6B01G018500 chr6A 5671232 5673912 2680 False 1334.00 1371 89.92000 617 2810 2 chr6A.!!$F5 2193
3 TraesCS6B01G018500 chr6A 5773872 5776540 2668 False 1328.00 1376 89.83800 617 2810 2 chr6A.!!$F6 2193
4 TraesCS6B01G018500 chr6A 5688812 5689658 846 False 1042.00 1042 89.30700 3385 4211 1 chr6A.!!$F2 826
5 TraesCS6B01G018500 chr6A 5785310 5785889 579 False 874.00 874 93.81400 2806 3387 1 chr6A.!!$F3 581
6 TraesCS6B01G018500 chr6A 5682682 5683260 578 False 856.00 856 93.29900 2806 3387 1 chr6A.!!$F1 581
7 TraesCS6B01G018500 chr6A 5791278 5791958 680 False 406.00 431 89.23700 3385 4211 2 chr6A.!!$F7 826
8 TraesCS6B01G018500 chr6D 6271326 6277297 5971 False 1207.25 2682 90.43675 1 3863 4 chr6D.!!$F2 3862

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
541 2269 0.033504 GACTTGGAGTGTTCGGCAGA 59.966 55.0 0.00 0.00 0.0 4.26 F
1922 4489 0.110464 GCGACAAGAAAGCAGCTGAC 60.110 55.0 20.43 9.11 0.0 3.51 F
2922 5497 0.463654 TCCCAATCGGCATGCTACAC 60.464 55.0 18.92 0.00 0.0 2.90 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2156 4724 0.175760 TCGGCAGATACCTGAAGTGC 59.824 55.0 0.0 0.0 43.02 4.40 R
3051 5626 0.443869 CGATGCCAAAGTTCTGACCG 59.556 55.0 0.0 0.0 0.00 4.79 R
3765 6364 0.669932 AGCAGAAGCAGCAGAAGACG 60.670 55.0 0.0 0.0 45.49 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 5.121811 AGATCTGTGTGGATGATTAGTTGC 58.878 41.667 0.00 0.00 0.00 4.17
47 48 5.062558 GTGTGGATGATTAGTTGCAATTTGC 59.937 40.000 14.49 14.49 45.29 3.68
77 78 9.739276 TTTTGAATTAGTTAGATCTCCATGTGT 57.261 29.630 0.00 0.00 0.00 3.72
106 107 4.277009 TGGGGCGAACCATGTGCA 62.277 61.111 0.00 0.00 42.91 4.57
161 162 6.829229 TTGTTCTCTGATCTGCATGAAAAT 57.171 33.333 0.00 0.00 0.00 1.82
163 164 7.926674 TGTTCTCTGATCTGCATGAAAATAA 57.073 32.000 0.00 0.00 0.00 1.40
164 165 8.515695 TGTTCTCTGATCTGCATGAAAATAAT 57.484 30.769 0.00 0.00 0.00 1.28
209 210 2.509569 ACGTGTGGGAACAAATATGCA 58.490 42.857 0.00 0.00 46.06 3.96
211 212 2.227626 CGTGTGGGAACAAATATGCACA 59.772 45.455 0.00 0.00 46.06 4.57
219 220 2.963432 ACAAATATGCACAGGCTTTGC 58.037 42.857 18.42 18.42 41.91 3.68
261 267 2.542907 GCATGGGATTGCGTACCGG 61.543 63.158 0.00 0.00 30.92 5.28
268 274 1.365699 GATTGCGTACCGGTGAATGT 58.634 50.000 19.93 0.00 0.00 2.71
288 294 2.677228 GAGCTTTGGGCCAGGCTA 59.323 61.111 27.69 3.80 43.05 3.93
311 317 1.200948 GCTGACCTTTTGATGACTGGC 59.799 52.381 0.00 0.00 0.00 4.85
334 340 5.441709 TTTTCAAACCTAGCCTAAAACCG 57.558 39.130 0.00 0.00 0.00 4.44
342 348 2.437180 CCTAAAACCGGCCCGACC 60.437 66.667 3.71 0.00 0.00 4.79
343 349 2.666812 CTAAAACCGGCCCGACCT 59.333 61.111 3.71 0.00 35.61 3.85
345 351 0.179092 CTAAAACCGGCCCGACCTAG 60.179 60.000 3.71 0.00 35.61 3.02
372 378 5.140747 TGCTCAGTTTTACTCTTCTCCTC 57.859 43.478 0.00 0.00 0.00 3.71
418 2146 4.386711 CCGGGTTCTCCATATTAGGAAAC 58.613 47.826 0.00 0.00 37.20 2.78
434 2162 5.813513 AGGAAACAAGATGGAATTTTGCT 57.186 34.783 0.00 0.00 41.73 3.91
469 2197 4.891627 TGGTCATTATTTACGTGCATGG 57.108 40.909 11.36 0.00 0.00 3.66
476 2204 5.682943 TTATTTACGTGCATGGATAAGGC 57.317 39.130 11.36 0.00 0.00 4.35
481 2209 1.948834 CGTGCATGGATAAGGCAATGA 59.051 47.619 0.00 0.00 39.57 2.57
482 2210 2.031420 CGTGCATGGATAAGGCAATGAG 60.031 50.000 0.00 0.00 39.57 2.90
485 2213 3.138098 TGCATGGATAAGGCAATGAGGTA 59.862 43.478 0.00 0.00 34.05 3.08
496 2224 4.780021 AGGCAATGAGGTAAGAGAGAAAGA 59.220 41.667 0.00 0.00 0.00 2.52
509 2237 3.673902 AGAGAAAGAGAAGCAAGGAAGC 58.326 45.455 0.00 0.00 0.00 3.86
513 2241 0.394565 AGAGAAGCAAGGAAGCACGT 59.605 50.000 0.00 0.00 36.85 4.49
515 2243 0.886490 AGAAGCAAGGAAGCACGTGG 60.886 55.000 18.88 0.00 36.85 4.94
516 2244 1.152963 AAGCAAGGAAGCACGTGGT 60.153 52.632 15.81 15.81 36.85 4.16
536 2264 1.217882 GTGGTGACTTGGAGTGTTCG 58.782 55.000 0.00 0.00 0.00 3.95
537 2265 0.105964 TGGTGACTTGGAGTGTTCGG 59.894 55.000 0.00 0.00 0.00 4.30
538 2266 1.228657 GGTGACTTGGAGTGTTCGGC 61.229 60.000 0.00 0.00 0.00 5.54
539 2267 0.531974 GTGACTTGGAGTGTTCGGCA 60.532 55.000 0.00 0.00 0.00 5.69
540 2268 0.249868 TGACTTGGAGTGTTCGGCAG 60.250 55.000 0.00 0.00 0.00 4.85
541 2269 0.033504 GACTTGGAGTGTTCGGCAGA 59.966 55.000 0.00 0.00 0.00 4.26
542 2270 0.687354 ACTTGGAGTGTTCGGCAGAT 59.313 50.000 0.00 0.00 0.00 2.90
543 2271 1.899814 ACTTGGAGTGTTCGGCAGATA 59.100 47.619 0.00 0.00 0.00 1.98
544 2272 2.271800 CTTGGAGTGTTCGGCAGATAC 58.728 52.381 0.00 0.00 0.00 2.24
545 2273 1.262417 TGGAGTGTTCGGCAGATACA 58.738 50.000 4.99 2.30 0.00 2.29
546 2274 1.067142 TGGAGTGTTCGGCAGATACAC 60.067 52.381 17.67 17.67 37.99 2.90
547 2275 1.204941 GGAGTGTTCGGCAGATACACT 59.795 52.381 23.58 23.58 43.97 3.55
548 2276 2.426024 GGAGTGTTCGGCAGATACACTA 59.574 50.000 23.48 0.00 42.74 2.74
549 2277 3.068307 GGAGTGTTCGGCAGATACACTAT 59.932 47.826 23.48 11.47 42.74 2.12
550 2278 4.277672 GGAGTGTTCGGCAGATACACTATA 59.722 45.833 23.48 0.00 42.74 1.31
551 2279 5.221185 GGAGTGTTCGGCAGATACACTATAA 60.221 44.000 23.48 0.00 42.74 0.98
552 2280 6.406692 AGTGTTCGGCAGATACACTATAAT 57.593 37.500 22.74 8.21 41.87 1.28
553 2281 6.448006 AGTGTTCGGCAGATACACTATAATC 58.552 40.000 22.74 5.12 41.87 1.75
554 2282 6.265649 AGTGTTCGGCAGATACACTATAATCT 59.734 38.462 22.74 7.24 41.87 2.40
555 2283 7.447545 AGTGTTCGGCAGATACACTATAATCTA 59.552 37.037 22.74 0.00 41.87 1.98
556 2284 8.244802 GTGTTCGGCAGATACACTATAATCTAT 58.755 37.037 17.90 0.00 36.45 1.98
557 2285 8.459635 TGTTCGGCAGATACACTATAATCTATC 58.540 37.037 0.00 0.00 31.25 2.08
558 2286 8.679100 GTTCGGCAGATACACTATAATCTATCT 58.321 37.037 0.00 0.00 31.25 1.98
559 2287 9.901172 TTCGGCAGATACACTATAATCTATCTA 57.099 33.333 0.00 0.00 31.25 1.98
605 2609 4.819088 TGCATCACACTCTAGTAGAGCTAG 59.181 45.833 24.37 17.16 46.12 3.42
629 2636 8.752005 AGTAAAGCACCATGTAAATACATCAT 57.248 30.769 3.12 0.00 44.57 2.45
651 2658 7.471721 TCATTTTGTATCGCCAAGTAAATCAG 58.528 34.615 0.00 0.00 0.00 2.90
653 2660 4.481368 TGTATCGCCAAGTAAATCAGGT 57.519 40.909 0.00 0.00 0.00 4.00
702 2709 2.233922 ACCGAATAGTGTTGGAGGTGAG 59.766 50.000 0.00 0.00 0.00 3.51
890 2901 1.468506 TACGCCAGCTGACCAACTCA 61.469 55.000 17.39 0.00 0.00 3.41
891 2902 1.376424 CGCCAGCTGACCAACTCAT 60.376 57.895 17.39 0.00 0.00 2.90
914 2925 2.431057 TCGACCTTCTCTGATAAAGGCC 59.569 50.000 15.26 0.00 44.93 5.19
915 2926 2.799917 CGACCTTCTCTGATAAAGGCCG 60.800 54.545 15.26 13.27 44.93 6.13
916 2927 1.486726 ACCTTCTCTGATAAAGGCCGG 59.513 52.381 15.26 0.00 44.93 6.13
917 2928 1.587547 CTTCTCTGATAAAGGCCGGC 58.412 55.000 21.18 21.18 0.00 6.13
918 2929 0.908910 TTCTCTGATAAAGGCCGGCA 59.091 50.000 30.85 7.96 0.00 5.69
919 2930 1.131638 TCTCTGATAAAGGCCGGCAT 58.868 50.000 30.85 21.35 0.00 4.40
920 2931 1.202687 TCTCTGATAAAGGCCGGCATG 60.203 52.381 30.85 8.34 0.00 4.06
921 2932 0.179020 TCTGATAAAGGCCGGCATGG 60.179 55.000 30.85 8.34 42.50 3.66
948 2965 4.465512 CGATGCTGCCAACCGCAC 62.466 66.667 0.00 0.00 44.64 5.34
985 3011 3.487574 GCGAGATAGAACCTTTGATCACG 59.512 47.826 0.00 0.00 36.08 4.35
987 3013 3.798202 AGATAGAACCTTTGATCACGCC 58.202 45.455 0.00 0.00 0.00 5.68
988 3014 3.197766 AGATAGAACCTTTGATCACGCCA 59.802 43.478 0.00 0.00 0.00 5.69
989 3015 1.813513 AGAACCTTTGATCACGCCAG 58.186 50.000 0.00 0.00 0.00 4.85
990 3016 1.347707 AGAACCTTTGATCACGCCAGA 59.652 47.619 0.00 0.00 0.00 3.86
991 3017 1.464997 GAACCTTTGATCACGCCAGAC 59.535 52.381 0.00 0.00 0.00 3.51
992 3018 0.687354 ACCTTTGATCACGCCAGACT 59.313 50.000 0.00 0.00 0.00 3.24
1113 3147 4.888325 CAGGGGATCCGAGGGCCT 62.888 72.222 5.25 5.25 38.33 5.19
1227 3262 0.178998 ACATCATGCCCATCCTGCTC 60.179 55.000 0.00 0.00 0.00 4.26
1298 3336 6.723131 AAACGACTACTCATTTTCTTAGGC 57.277 37.500 0.00 0.00 0.00 3.93
1300 3338 6.770746 ACGACTACTCATTTTCTTAGGCTA 57.229 37.500 0.00 0.00 0.00 3.93
1301 3339 7.166691 ACGACTACTCATTTTCTTAGGCTAA 57.833 36.000 6.80 6.80 0.00 3.09
1303 3341 8.258708 ACGACTACTCATTTTCTTAGGCTAAAT 58.741 33.333 8.54 0.00 0.00 1.40
1306 3345 9.740710 ACTACTCATTTTCTTAGGCTAAATTGT 57.259 29.630 8.54 5.15 0.00 2.71
1369 3412 9.635404 TTTTTGGTATAATATGACCCCTACAAG 57.365 33.333 0.00 0.00 34.58 3.16
1370 3413 6.368779 TGGTATAATATGACCCCTACAAGC 57.631 41.667 0.00 0.00 34.58 4.01
1371 3414 6.088819 TGGTATAATATGACCCCTACAAGCT 58.911 40.000 0.00 0.00 34.58 3.74
1405 3448 2.332654 GGTTGGTCGTGGCACATCC 61.333 63.158 19.09 18.17 44.52 3.51
1421 3464 5.353938 GCACATCCATTTGCAACATTATCT 58.646 37.500 0.00 0.00 38.68 1.98
1554 3598 1.373059 GATCCCCGCCATCTTCTCC 59.627 63.158 0.00 0.00 0.00 3.71
1644 3688 1.614317 CCCGTGCTCAAATCCCTCTTT 60.614 52.381 0.00 0.00 0.00 2.52
1717 3761 2.278332 AGTCCTTCCTGCTTTCAACC 57.722 50.000 0.00 0.00 0.00 3.77
1741 3785 8.320396 CCATGAGAAGATCAAGGTTGTATATG 57.680 38.462 0.00 0.00 41.10 1.78
1742 3786 7.094890 CCATGAGAAGATCAAGGTTGTATATGC 60.095 40.741 0.00 0.00 41.10 3.14
1743 3787 6.291377 TGAGAAGATCAAGGTTGTATATGCC 58.709 40.000 0.00 0.00 34.02 4.40
1746 3790 5.234466 AGATCAAGGTTGTATATGCCTCC 57.766 43.478 0.00 0.00 0.00 4.30
1747 3791 3.857157 TCAAGGTTGTATATGCCTCCC 57.143 47.619 0.00 0.00 0.00 4.30
1750 3794 5.162637 TCAAGGTTGTATATGCCTCCCTAT 58.837 41.667 0.00 0.00 0.00 2.57
1751 3795 6.327781 TCAAGGTTGTATATGCCTCCCTATA 58.672 40.000 0.00 0.00 0.00 1.31
1752 3796 6.212791 TCAAGGTTGTATATGCCTCCCTATAC 59.787 42.308 0.00 0.00 33.38 1.47
1754 3798 5.958987 AGGTTGTATATGCCTCCCTATACTC 59.041 44.000 0.00 0.00 33.75 2.59
1755 3799 5.958987 GGTTGTATATGCCTCCCTATACTCT 59.041 44.000 0.00 0.00 33.75 3.24
1756 3800 7.036059 AGGTTGTATATGCCTCCCTATACTCTA 60.036 40.741 0.00 0.00 33.75 2.43
1759 3803 7.705700 TGTATATGCCTCCCTATACTCTACAA 58.294 38.462 0.00 0.00 33.75 2.41
1760 3804 8.344546 TGTATATGCCTCCCTATACTCTACAAT 58.655 37.037 0.00 0.00 33.75 2.71
1761 3805 9.863650 GTATATGCCTCCCTATACTCTACAATA 57.136 37.037 0.00 0.00 31.18 1.90
1762 3806 8.770010 ATATGCCTCCCTATACTCTACAATAC 57.230 38.462 0.00 0.00 0.00 1.89
1765 3809 6.437477 TGCCTCCCTATACTCTACAATACATG 59.563 42.308 0.00 0.00 0.00 3.21
1766 3810 6.628398 GCCTCCCTATACTCTACAATACATGC 60.628 46.154 0.00 0.00 0.00 4.06
1767 3811 6.437477 CCTCCCTATACTCTACAATACATGCA 59.563 42.308 0.00 0.00 0.00 3.96
1769 3813 8.067751 TCCCTATACTCTACAATACATGCATC 57.932 38.462 0.00 0.00 0.00 3.91
1771 3815 9.190317 CCCTATACTCTACAATACATGCATCTA 57.810 37.037 0.00 0.00 0.00 1.98
1776 3976 8.414629 ACTCTACAATACATGCATCTATCTGA 57.585 34.615 0.00 0.00 0.00 3.27
1922 4489 0.110464 GCGACAAGAAAGCAGCTGAC 60.110 55.000 20.43 9.11 0.00 3.51
1958 4525 2.355363 TTCAACGACCTGACCGCG 60.355 61.111 0.00 0.00 0.00 6.46
2045 4612 1.673168 GGGAGATGCAAAAGATCGCT 58.327 50.000 0.00 0.00 0.00 4.93
2084 4651 2.695666 TGCTCCAATACTCTGGTAGAGC 59.304 50.000 5.78 0.00 46.12 4.09
2104 4672 9.182933 GTAGAGCACTATAGTATTTGCTTACAC 57.817 37.037 14.69 10.17 45.32 2.90
2121 4689 1.002888 ACACACCAGCTCTGAATCCAG 59.997 52.381 0.00 0.00 41.74 3.86
2122 4690 1.277273 CACACCAGCTCTGAATCCAGA 59.723 52.381 0.00 0.00 46.48 3.86
2130 4698 3.968649 AGCTCTGAATCCAGACTCATGAT 59.031 43.478 0.00 0.00 44.01 2.45
2156 4724 2.487762 ACCATGTTAATCTTGTGCCGTG 59.512 45.455 0.00 0.00 0.00 4.94
2330 4898 2.671070 GGGCTGCTGTTAGAGGCA 59.329 61.111 0.00 0.00 36.50 4.75
2367 4935 4.884257 GGAGCGGCGGCGATACAA 62.884 66.667 36.87 0.00 46.35 2.41
2448 5016 1.690633 GCCACCCTCCTCATCTGGA 60.691 63.158 0.00 0.00 34.52 3.86
2471 5039 2.282391 TTCCTGCTTGCCGTGCAT 60.282 55.556 0.00 0.00 38.76 3.96
2562 5130 0.828022 ACCCAACGCCGATATTCTCA 59.172 50.000 0.00 0.00 0.00 3.27
2570 5138 2.936498 CGCCGATATTCTCACCAAACTT 59.064 45.455 0.00 0.00 0.00 2.66
2594 5162 4.319177 AGCTGGTGAGTACATTTCAACTC 58.681 43.478 0.00 0.00 42.04 3.01
2596 5164 4.757149 GCTGGTGAGTACATTTCAACTCTT 59.243 41.667 0.00 0.00 42.17 2.85
2673 5248 8.657074 TCATATTGTTTATAGAAGGTTGGTCG 57.343 34.615 0.00 0.00 0.00 4.79
2688 5263 6.500910 AGGTTGGTCGAAGTTTACAAAATTC 58.499 36.000 5.11 5.11 39.02 2.17
2730 5305 9.632807 TTATATGTGGTGTAATTTTGCAAAGAC 57.367 29.630 12.41 12.06 0.00 3.01
2770 5345 0.538977 AGCATGCTCTGTGCCTGTTT 60.539 50.000 16.30 0.00 43.50 2.83
2859 5434 3.240134 GAAGGCTGCCTCCGACACA 62.240 63.158 23.61 0.00 30.89 3.72
2907 5482 5.387788 CAGGGAACAATCATATCAATCCCA 58.612 41.667 10.34 0.00 46.05 4.37
2922 5497 0.463654 TCCCAATCGGCATGCTACAC 60.464 55.000 18.92 0.00 0.00 2.90
2943 5518 1.071699 CGAGACAAGGAAGTTTGGGGA 59.928 52.381 0.00 0.00 32.32 4.81
3051 5626 1.113517 TAGGCCCGAGAGTATGCACC 61.114 60.000 0.00 0.00 0.00 5.01
3093 5668 1.518056 AAGTGCAGGTTGTCATGGCG 61.518 55.000 0.00 0.00 0.00 5.69
3104 5679 1.202568 TGTCATGGCGATGATCCTCAC 60.203 52.381 14.85 2.07 40.78 3.51
3108 5683 0.107703 TGGCGATGATCCTCACCAAC 60.108 55.000 5.37 0.00 0.00 3.77
3249 5824 9.143631 GATTGCAAAATTAAGCTCATTGTAACT 57.856 29.630 1.71 0.00 30.46 2.24
3306 5897 8.467598 TCTTAGTTATGGTCTGACATTCTACAC 58.532 37.037 10.38 0.00 32.39 2.90
3313 5904 5.105351 TGGTCTGACATTCTACACAATCGAT 60.105 40.000 10.38 0.00 0.00 3.59
3387 5978 9.915629 GTAATAGACGAATCTTCTTGGATACAT 57.084 33.333 0.00 0.00 41.08 2.29
3409 6000 6.040955 ACATATACGAGCAAGAAGATCAAGGA 59.959 38.462 0.00 0.00 31.47 3.36
3429 6020 7.172532 TCAAGGAACATGTAGTTGTGATGTTAC 59.827 37.037 0.00 0.00 41.51 2.50
3493 6084 0.739561 GACCAGCGTAACCTCGAGAT 59.260 55.000 15.71 4.86 0.00 2.75
3506 6097 2.414806 CTCGAGATTGCATCCATCCAG 58.585 52.381 6.58 0.00 0.00 3.86
3605 6196 3.181434 TGGGAGCACTTGGTATCTTTGTT 60.181 43.478 0.00 0.00 0.00 2.83
3609 6200 5.106673 GGAGCACTTGGTATCTTTGTTGTAC 60.107 44.000 0.00 0.00 0.00 2.90
3621 6212 1.330234 TGTTGTACAGTACCTCGGCA 58.670 50.000 8.30 0.00 0.00 5.69
3622 6213 1.271379 TGTTGTACAGTACCTCGGCAG 59.729 52.381 8.30 0.00 0.00 4.85
3626 6217 2.026915 TGTACAGTACCTCGGCAGTAGA 60.027 50.000 8.30 0.00 0.00 2.59
3637 6228 1.497722 GCAGTAGACACTTTGCCGC 59.502 57.895 0.00 0.00 30.46 6.53
3644 6235 4.332637 CACTTTGCCGCGCTTGCT 62.333 61.111 17.83 0.00 36.08 3.91
3650 6241 3.099574 GCCGCGCTTGCTGAAAAC 61.100 61.111 5.56 0.00 36.08 2.43
3659 6250 3.520569 GCTTGCTGAAAACAAGTTCCAA 58.479 40.909 5.50 0.00 45.09 3.53
3746 6337 4.801147 TCGAGATGTGAATAATGCTTGC 57.199 40.909 0.00 0.00 0.00 4.01
3750 6341 5.693555 CGAGATGTGAATAATGCTTGCTAGA 59.306 40.000 0.00 0.00 0.00 2.43
3765 6364 2.880963 CTAGACTAGCAACTGGAGCC 57.119 55.000 0.00 0.00 0.00 4.70
3821 6420 5.338381 CCTTGCACCTCTTAGTGATTTCCTA 60.338 44.000 0.00 0.00 40.34 2.94
3823 6422 6.313519 TGCACCTCTTAGTGATTTCCTAAT 57.686 37.500 0.00 0.00 40.34 1.73
3825 6424 5.760743 GCACCTCTTAGTGATTTCCTAATCC 59.239 44.000 0.00 0.00 40.34 3.01
3828 6427 7.829211 CACCTCTTAGTGATTTCCTAATCCAAA 59.171 37.037 0.00 0.00 40.34 3.28
3839 6438 9.591792 GATTTCCTAATCCAAAAAGATTCAAGG 57.408 33.333 0.00 0.00 37.62 3.61
3842 6441 9.768215 TTCCTAATCCAAAAAGATTCAAGGTAT 57.232 29.630 0.00 0.00 37.62 2.73
3891 6495 6.969993 TGCTTATGTTCAAGGGTTAAACTT 57.030 33.333 0.00 0.00 0.00 2.66
3901 6509 4.823790 AGGGTTAAACTTTTACACAGCG 57.176 40.909 0.00 0.00 0.00 5.18
3905 6513 5.443261 GGTTAAACTTTTACACAGCGGTAC 58.557 41.667 0.00 0.00 0.00 3.34
3926 6541 7.359765 CGGTACTAACTTATGTGACCACAAAAG 60.360 40.741 6.95 2.20 45.41 2.27
3928 6543 7.875327 ACTAACTTATGTGACCACAAAAGTT 57.125 32.000 6.95 3.50 45.41 2.66
3935 6550 9.398170 CTTATGTGACCACAAAAGTTATGAAAG 57.602 33.333 6.95 0.00 45.41 2.62
3939 6554 8.474025 TGTGACCACAAAAGTTATGAAAGATTT 58.526 29.630 0.00 0.00 38.56 2.17
4031 6652 2.801162 CACGTGCACCTCTCGTCG 60.801 66.667 12.15 0.00 42.22 5.12
4073 6694 2.854777 CTCTACGAAATCAGTCTTGGCG 59.145 50.000 0.00 0.00 0.00 5.69
4130 6751 0.393808 GCGGGAAGGCCTTACATTGA 60.394 55.000 29.15 0.00 0.00 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
77 78 1.475403 TCGCCCCACAAAACAAAAGA 58.525 45.000 0.00 0.00 0.00 2.52
132 133 8.828688 TCATGCAGATCAGAGAACAAATATAG 57.171 34.615 0.00 0.00 0.00 1.31
190 191 2.227626 TGTGCATATTTGTTCCCACACG 59.772 45.455 0.00 0.00 30.32 4.49
196 197 3.874392 AAGCCTGTGCATATTTGTTCC 57.126 42.857 0.00 0.00 41.13 3.62
259 265 1.068333 CCAAAGCTCCAACATTCACCG 60.068 52.381 0.00 0.00 0.00 4.94
261 267 1.337167 GCCCAAAGCTCCAACATTCAC 60.337 52.381 0.00 0.00 38.99 3.18
268 274 2.118076 CCTGGCCCAAAGCTCCAA 59.882 61.111 0.00 0.00 43.05 3.53
311 317 5.458015 CGGTTTTAGGCTAGGTTTGAAAAG 58.542 41.667 0.00 0.00 0.00 2.27
334 340 2.829592 CAATCCCTAGGTCGGGCC 59.170 66.667 8.29 0.00 44.30 5.80
342 348 5.983540 AGAGTAAAACTGAGCAATCCCTAG 58.016 41.667 0.00 0.00 0.00 3.02
343 349 6.213600 AGAAGAGTAAAACTGAGCAATCCCTA 59.786 38.462 0.00 0.00 0.00 3.53
345 351 5.249420 AGAAGAGTAAAACTGAGCAATCCC 58.751 41.667 0.00 0.00 0.00 3.85
351 357 4.500127 GGAGGAGAAGAGTAAAACTGAGC 58.500 47.826 0.00 0.00 0.00 4.26
372 378 1.162698 CTGCATGGCGAAGATATGGG 58.837 55.000 0.00 0.00 0.00 4.00
400 406 7.993183 TCCATCTTGTTTCCTAATATGGAGAAC 59.007 37.037 0.00 0.00 37.17 3.01
404 410 9.713684 AAATTCCATCTTGTTTCCTAATATGGA 57.286 29.630 0.00 0.00 39.60 3.41
418 2146 5.716094 TGATGTCAGCAAAATTCCATCTTG 58.284 37.500 0.00 0.00 32.07 3.02
434 2162 7.465353 AATAATGACCAACATGTTGATGTCA 57.535 32.000 33.50 33.50 42.30 3.58
469 2197 6.412362 TCTCTCTTACCTCATTGCCTTATC 57.588 41.667 0.00 0.00 0.00 1.75
476 2204 6.534793 GCTTCTCTTTCTCTCTTACCTCATTG 59.465 42.308 0.00 0.00 0.00 2.82
481 2209 5.046663 CCTTGCTTCTCTTTCTCTCTTACCT 60.047 44.000 0.00 0.00 0.00 3.08
482 2210 5.046950 TCCTTGCTTCTCTTTCTCTCTTACC 60.047 44.000 0.00 0.00 0.00 2.85
485 2213 5.550290 CTTCCTTGCTTCTCTTTCTCTCTT 58.450 41.667 0.00 0.00 0.00 2.85
496 2224 0.886490 CCACGTGCTTCCTTGCTTCT 60.886 55.000 10.91 0.00 0.00 2.85
509 2237 1.436195 CCAAGTCACCACACCACGTG 61.436 60.000 9.08 9.08 45.92 4.49
513 2241 0.180171 CACTCCAAGTCACCACACCA 59.820 55.000 0.00 0.00 0.00 4.17
515 2243 1.940613 GAACACTCCAAGTCACCACAC 59.059 52.381 0.00 0.00 0.00 3.82
516 2244 1.472552 CGAACACTCCAAGTCACCACA 60.473 52.381 0.00 0.00 0.00 4.17
564 2292 9.171877 TGTGATGCACAATGAACTTTATGTATA 57.828 29.630 0.00 0.00 41.69 1.47
565 2293 7.970061 GTGTGATGCACAATGAACTTTATGTAT 59.030 33.333 1.32 0.00 46.28 2.29
566 2294 7.304735 GTGTGATGCACAATGAACTTTATGTA 58.695 34.615 1.32 0.00 46.28 2.29
567 2295 6.151691 GTGTGATGCACAATGAACTTTATGT 58.848 36.000 1.32 0.00 46.28 2.29
568 2296 6.621737 GTGTGATGCACAATGAACTTTATG 57.378 37.500 1.32 0.00 46.28 1.90
605 2609 9.801873 AAATGATGTATTTACATGGTGCTTTAC 57.198 29.630 7.91 0.00 46.20 2.01
629 2636 5.708230 ACCTGATTTACTTGGCGATACAAAA 59.292 36.000 0.00 0.00 0.00 2.44
651 2658 6.704050 GGCTAACTCTTATCATTTCTGAGACC 59.296 42.308 0.00 0.00 34.12 3.85
653 2660 7.268586 GTGGCTAACTCTTATCATTTCTGAGA 58.731 38.462 0.00 0.00 34.12 3.27
702 2709 0.179062 CTCTAGGTGTGAGGCCATGC 60.179 60.000 5.01 0.00 0.00 4.06
890 2901 4.038642 GCCTTTATCAGAGAAGGTCGAGAT 59.961 45.833 14.06 0.00 43.47 2.75
891 2902 3.381908 GCCTTTATCAGAGAAGGTCGAGA 59.618 47.826 14.06 0.00 43.47 4.04
964 2990 3.487574 GCGTGATCAAAGGTTCTATCTCG 59.512 47.826 0.00 0.00 38.00 4.04
987 3013 2.821366 GCCATGCCACCGAGTCTG 60.821 66.667 0.00 0.00 0.00 3.51
988 3014 4.457496 CGCCATGCCACCGAGTCT 62.457 66.667 0.00 0.00 0.00 3.24
1113 3147 2.288025 GGCCAGGAACGTGTAGGGA 61.288 63.158 0.00 0.00 0.00 4.20
1298 3336 4.335594 GGGCACAGGTAGCTAACAATTTAG 59.664 45.833 12.26 0.00 38.23 1.85
1300 3338 3.089284 GGGCACAGGTAGCTAACAATTT 58.911 45.455 12.26 0.00 0.00 1.82
1301 3339 2.041081 TGGGCACAGGTAGCTAACAATT 59.959 45.455 12.26 0.00 0.00 2.32
1303 3341 1.060729 TGGGCACAGGTAGCTAACAA 58.939 50.000 12.26 0.00 0.00 2.83
1306 3345 3.352648 GAATTTGGGCACAGGTAGCTAA 58.647 45.455 0.00 0.00 0.00 3.09
1316 3355 0.035439 TCCTCGAGGAATTTGGGCAC 60.035 55.000 31.91 0.00 42.18 5.01
1347 3390 6.088819 AGCTTGTAGGGGTCATATTATACCA 58.911 40.000 0.00 0.00 37.51 3.25
1349 3392 7.124448 AGCTAGCTTGTAGGGGTCATATTATAC 59.876 40.741 12.68 0.00 0.00 1.47
1360 3403 2.383442 TCCTAGCTAGCTTGTAGGGG 57.617 55.000 24.88 14.77 35.03 4.79
1363 3406 6.389091 CATCTCAATCCTAGCTAGCTTGTAG 58.611 44.000 24.88 14.34 0.00 2.74
1364 3407 5.244851 CCATCTCAATCCTAGCTAGCTTGTA 59.755 44.000 24.88 8.45 0.00 2.41
1365 3408 4.040217 CCATCTCAATCCTAGCTAGCTTGT 59.960 45.833 24.88 2.71 0.00 3.16
1367 3410 4.230455 ACCATCTCAATCCTAGCTAGCTT 58.770 43.478 24.88 7.25 0.00 3.74
1368 3411 3.855668 ACCATCTCAATCCTAGCTAGCT 58.144 45.455 23.12 23.12 0.00 3.32
1369 3412 4.314121 CAACCATCTCAATCCTAGCTAGC 58.686 47.826 15.74 6.62 0.00 3.42
1370 3413 4.346418 ACCAACCATCTCAATCCTAGCTAG 59.654 45.833 14.20 14.20 0.00 3.42
1371 3414 4.298626 ACCAACCATCTCAATCCTAGCTA 58.701 43.478 0.00 0.00 0.00 3.32
1445 3488 9.495572 AGAATTAATTGAAATTACCCGCAAAAA 57.504 25.926 5.17 0.00 31.03 1.94
1446 3489 9.145865 GAGAATTAATTGAAATTACCCGCAAAA 57.854 29.630 5.17 0.00 31.03 2.44
1447 3490 7.486551 CGAGAATTAATTGAAATTACCCGCAAA 59.513 33.333 5.17 0.00 31.03 3.68
1448 3491 6.970043 CGAGAATTAATTGAAATTACCCGCAA 59.030 34.615 5.17 0.00 31.03 4.85
1449 3492 6.316640 TCGAGAATTAATTGAAATTACCCGCA 59.683 34.615 5.17 0.00 31.03 5.69
1450 3493 6.721321 TCGAGAATTAATTGAAATTACCCGC 58.279 36.000 5.17 0.00 31.03 6.13
1481 3524 9.097257 CTGAACCAACAAAACAAATTATGAACT 57.903 29.630 0.00 0.00 0.00 3.01
1482 3525 8.334632 CCTGAACCAACAAAACAAATTATGAAC 58.665 33.333 0.00 0.00 0.00 3.18
1501 3545 1.029681 AGGAACGTTTTGCCTGAACC 58.970 50.000 0.46 0.00 0.00 3.62
1554 3598 2.229675 TTATCAGCTGCAGGTCGATG 57.770 50.000 26.83 14.89 0.00 3.84
1644 3688 0.391793 TCAATATGACGCCGTTGCCA 60.392 50.000 0.00 0.00 0.00 4.92
1671 3715 4.717629 TGCCGCTTCCAGTCGTCG 62.718 66.667 0.00 0.00 0.00 5.12
1717 3761 7.094890 GGCATATACAACCTTGATCTTCTCATG 60.095 40.741 0.00 0.00 32.72 3.07
1735 3779 8.770010 ATTGTAGAGTATAGGGAGGCATATAC 57.230 38.462 0.00 0.00 35.84 1.47
1736 3780 9.863650 GTATTGTAGAGTATAGGGAGGCATATA 57.136 37.037 0.00 0.00 0.00 0.86
1738 3782 7.705700 TGTATTGTAGAGTATAGGGAGGCATA 58.294 38.462 0.00 0.00 0.00 3.14
1739 3783 6.562228 TGTATTGTAGAGTATAGGGAGGCAT 58.438 40.000 0.00 0.00 0.00 4.40
1740 3784 5.960704 TGTATTGTAGAGTATAGGGAGGCA 58.039 41.667 0.00 0.00 0.00 4.75
1741 3785 6.628398 GCATGTATTGTAGAGTATAGGGAGGC 60.628 46.154 0.00 0.00 0.00 4.70
1742 3786 6.437477 TGCATGTATTGTAGAGTATAGGGAGG 59.563 42.308 0.00 0.00 0.00 4.30
1743 3787 7.468141 TGCATGTATTGTAGAGTATAGGGAG 57.532 40.000 0.00 0.00 0.00 4.30
1750 3794 9.520515 TCAGATAGATGCATGTATTGTAGAGTA 57.479 33.333 16.74 0.37 0.00 2.59
1751 3795 8.414629 TCAGATAGATGCATGTATTGTAGAGT 57.585 34.615 16.74 0.00 0.00 3.24
1752 3796 9.303537 CATCAGATAGATGCATGTATTGTAGAG 57.696 37.037 16.74 3.96 46.90 2.43
1814 4014 0.973632 ACATGCTCTACACACGGGAA 59.026 50.000 0.00 0.00 0.00 3.97
1844 4411 0.178921 TCTGCCTTGTGACCTCTCCT 60.179 55.000 0.00 0.00 0.00 3.69
1846 4413 1.552337 TCATCTGCCTTGTGACCTCTC 59.448 52.381 0.00 0.00 0.00 3.20
1884 4451 2.226437 CGCTGTTGCTTTGGTGTATCTT 59.774 45.455 0.00 0.00 36.97 2.40
1922 4489 2.827800 AGGCGTGGATCATGTCTATG 57.172 50.000 0.00 0.00 33.21 2.23
2045 4612 2.283604 TCCAGCGTGGAGGCAGTA 60.284 61.111 3.02 0.00 42.67 2.74
2084 4651 7.254455 GCTGGTGTGTAAGCAAATACTATAGTG 60.254 40.741 15.90 0.00 39.31 2.74
2130 4698 6.600032 ACGGCACAAGATTAACATGGTTAATA 59.400 34.615 12.79 0.00 0.00 0.98
2156 4724 0.175760 TCGGCAGATACCTGAAGTGC 59.824 55.000 0.00 0.00 43.02 4.40
2367 4935 0.895530 ATCACCTCGTCGGTTGTCAT 59.104 50.000 0.00 0.00 46.37 3.06
2442 5010 1.293062 AGCAGGAACATGGTCCAGAT 58.707 50.000 31.20 20.27 40.48 2.90
2448 5016 1.973281 CGGCAAGCAGGAACATGGT 60.973 57.895 0.00 0.00 0.00 3.55
2471 5039 2.449518 TTGTCCTGCCACTGGGGA 60.450 61.111 0.00 0.00 40.01 4.81
2562 5130 3.577805 ACTCACCAGCTTAAGTTTGGT 57.422 42.857 21.16 21.16 45.77 3.67
2570 5138 5.865085 AGTTGAAATGTACTCACCAGCTTA 58.135 37.500 0.00 0.00 0.00 3.09
2659 5232 6.105397 TGTAAACTTCGACCAACCTTCTAT 57.895 37.500 0.00 0.00 0.00 1.98
2662 5235 5.488645 TTTGTAAACTTCGACCAACCTTC 57.511 39.130 0.00 0.00 0.00 3.46
2706 5281 6.806249 CGTCTTTGCAAAATTACACCACATAT 59.194 34.615 13.84 0.00 0.00 1.78
2712 5287 4.231718 TCCGTCTTTGCAAAATTACACC 57.768 40.909 13.84 0.00 0.00 4.16
2730 5305 7.477144 TGCTCACAACATATTAGTTATTCCG 57.523 36.000 0.00 0.00 0.00 4.30
2743 5318 1.810755 CACAGAGCATGCTCACAACAT 59.189 47.619 40.91 22.28 44.99 2.71
2770 5345 5.097742 ACCATGTGTAGCTGCATAAGTAA 57.902 39.130 8.05 0.00 0.00 2.24
2859 5434 1.333636 CCTTGATGCCTCCGAGGACT 61.334 60.000 19.33 3.67 37.67 3.85
2922 5497 1.523758 CCCAAACTTCCTTGTCTCGG 58.476 55.000 0.00 0.00 0.00 4.63
2948 5523 3.774702 GGTTGAACTCGTCGGCGC 61.775 66.667 3.52 0.00 38.14 6.53
2953 5528 1.676014 CCTCATGGGGTTGAACTCGTC 60.676 57.143 2.32 0.00 0.00 4.20
3045 5620 1.238439 CAAAGTTCTGACCGGTGCAT 58.762 50.000 14.63 0.00 0.00 3.96
3051 5626 0.443869 CGATGCCAAAGTTCTGACCG 59.556 55.000 0.00 0.00 0.00 4.79
3104 5679 2.433970 GAGAGGGAGATGGAGAAGTTGG 59.566 54.545 0.00 0.00 0.00 3.77
3108 5683 1.715785 GGGAGAGGGAGATGGAGAAG 58.284 60.000 0.00 0.00 0.00 2.85
3284 5859 6.605471 TGTGTAGAATGTCAGACCATAACT 57.395 37.500 0.00 0.00 0.00 2.24
3285 5860 7.254117 CGATTGTGTAGAATGTCAGACCATAAC 60.254 40.741 0.00 0.00 0.00 1.89
3293 5868 6.963242 CCAAAATCGATTGTGTAGAATGTCAG 59.037 38.462 23.52 4.03 0.00 3.51
3306 5897 4.107622 GGTTGCATCTCCAAAATCGATTG 58.892 43.478 12.25 1.06 0.00 2.67
3313 5904 5.177326 GCATAATTGGTTGCATCTCCAAAA 58.823 37.500 17.90 11.89 45.08 2.44
3387 5978 6.127451 TGTTCCTTGATCTTCTTGCTCGTATA 60.127 38.462 0.00 0.00 0.00 1.47
3409 6000 6.092122 CCATCGTAACATCACAACTACATGTT 59.908 38.462 2.30 0.00 42.20 2.71
3429 6020 3.963841 CGACGTCGTCTTCCATCG 58.036 61.111 29.08 4.96 34.11 3.84
3493 6084 5.239351 CAAAATGTTTCTGGATGGATGCAA 58.761 37.500 0.00 0.00 0.00 4.08
3605 6196 2.026915 TCTACTGCCGAGGTACTGTACA 60.027 50.000 18.79 0.00 41.55 2.90
3609 6200 1.132643 GTGTCTACTGCCGAGGTACTG 59.867 57.143 0.00 0.00 41.55 2.74
3621 6212 2.027625 GCGCGGCAAAGTGTCTACT 61.028 57.895 8.83 0.00 39.32 2.57
3622 6213 1.566018 AAGCGCGGCAAAGTGTCTAC 61.566 55.000 8.83 0.00 0.00 2.59
3626 6217 4.629115 GCAAGCGCGGCAAAGTGT 62.629 61.111 19.91 0.00 0.00 3.55
3637 6228 2.119457 GGAACTTGTTTTCAGCAAGCG 58.881 47.619 5.12 0.00 45.09 4.68
3644 6235 3.699038 CTCCCAGTTGGAACTTGTTTTCA 59.301 43.478 0.00 0.00 44.57 2.69
3650 6241 2.859165 TAGCTCCCAGTTGGAACTTG 57.141 50.000 0.00 0.00 44.57 3.16
3659 6250 0.537188 CACGGTGAATAGCTCCCAGT 59.463 55.000 0.74 0.00 0.00 4.00
3746 6337 1.066303 CGGCTCCAGTTGCTAGTCTAG 59.934 57.143 2.18 2.18 0.00 2.43
3750 6341 0.900647 AGACGGCTCCAGTTGCTAGT 60.901 55.000 0.00 0.00 0.00 2.57
3755 6346 1.294659 GCAGAAGACGGCTCCAGTTG 61.295 60.000 0.00 0.00 34.59 3.16
3756 6347 1.004440 GCAGAAGACGGCTCCAGTT 60.004 57.895 0.00 0.00 34.59 3.16
3765 6364 0.669932 AGCAGAAGCAGCAGAAGACG 60.670 55.000 0.00 0.00 45.49 4.18
3856 6458 6.732531 TGAACATAAGCATCTCAAACTGAG 57.267 37.500 0.00 0.00 45.59 3.35
3863 6465 4.574674 ACCCTTGAACATAAGCATCTCA 57.425 40.909 0.00 0.00 0.00 3.27
3864 6466 7.121315 AGTTTAACCCTTGAACATAAGCATCTC 59.879 37.037 0.00 0.00 32.15 2.75
3865 6467 6.948309 AGTTTAACCCTTGAACATAAGCATCT 59.052 34.615 0.00 0.00 32.15 2.90
3867 6469 7.539034 AAGTTTAACCCTTGAACATAAGCAT 57.461 32.000 0.00 0.00 32.15 3.79
3880 6484 3.566742 CCGCTGTGTAAAAGTTTAACCCT 59.433 43.478 0.00 0.00 0.00 4.34
3891 6495 6.587226 CACATAAGTTAGTACCGCTGTGTAAA 59.413 38.462 0.00 0.00 0.00 2.01
3901 6509 7.733402 TTTTGTGGTCACATAAGTTAGTACC 57.267 36.000 4.53 0.00 41.52 3.34
3954 6569 9.537848 GGTATTTACTACACGAGTTCAAAATTG 57.462 33.333 0.00 0.00 39.81 2.32
3957 6572 8.143193 TCAGGTATTTACTACACGAGTTCAAAA 58.857 33.333 0.00 0.00 39.81 2.44
3967 6583 6.821665 TGCTCCAATTCAGGTATTTACTACAC 59.178 38.462 0.00 0.00 31.44 2.90
3969 6585 7.859325 TTGCTCCAATTCAGGTATTTACTAC 57.141 36.000 0.00 0.00 0.00 2.73
3975 6596 4.516698 CGCTATTGCTCCAATTCAGGTATT 59.483 41.667 0.00 0.00 35.54 1.89
4073 6694 5.503520 CGTTTTCAGGTACAACTTCCTCAAC 60.504 44.000 0.00 0.00 30.91 3.18
4127 6748 3.890756 TCTACGACAACAGTAAGGGTCAA 59.109 43.478 0.00 0.00 0.00 3.18
4130 6751 2.227388 CGTCTACGACAACAGTAAGGGT 59.773 50.000 0.00 0.00 43.02 4.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.