Multiple sequence alignment - TraesCS6B01G018400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G018400 chr6B 100.000 7356 0 0 1 7356 11526880 11519525 0.000000e+00 13585
1 TraesCS6B01G018400 chr6B 85.138 1561 192 24 5815 7356 11415911 11414372 0.000000e+00 1561
2 TraesCS6B01G018400 chr6B 86.489 903 91 18 1434 2318 11428268 11427379 0.000000e+00 963
3 TraesCS6B01G018400 chr6B 83.784 851 97 21 6 830 11429825 11428990 0.000000e+00 769
4 TraesCS6B01G018400 chr6B 84.518 633 90 7 4810 5440 11417551 11416925 2.920000e-173 619
5 TraesCS6B01G018400 chr6B 84.137 643 58 12 783 1401 11429005 11428383 3.830000e-162 582
6 TraesCS6B01G018400 chr6B 86.239 327 40 3 5494 5819 11416680 11416358 4.220000e-92 350
7 TraesCS6B01G018400 chr6A 82.636 3179 446 63 1434 4586 5504561 5501463 0.000000e+00 2715
8 TraesCS6B01G018400 chr6A 83.791 2406 329 32 1434 3809 5480366 5477992 0.000000e+00 2226
9 TraesCS6B01G018400 chr6A 84.783 1564 202 20 5815 7356 5473983 5472434 0.000000e+00 1537
10 TraesCS6B01G018400 chr6A 84.665 1565 199 22 5815 7356 5499344 5497798 0.000000e+00 1522
11 TraesCS6B01G018400 chr6A 87.986 1182 88 14 825 1980 5558524 5557371 0.000000e+00 1347
12 TraesCS6B01G018400 chr6A 79.860 1574 255 37 5815 7350 5551728 5550179 0.000000e+00 1094
13 TraesCS6B01G018400 chr6A 77.734 1280 141 51 201 1400 5481698 5480483 0.000000e+00 652
14 TraesCS6B01G018400 chr6A 79.464 896 114 38 542 1400 5505543 5504681 8.280000e-159 571
15 TraesCS6B01G018400 chr6A 88.693 283 20 8 550 830 5558844 5558572 1.180000e-87 335
16 TraesCS6B01G018400 chr6A 84.498 329 45 5 5493 5819 5500116 5499792 3.310000e-83 320
17 TraesCS6B01G018400 chr6A 85.253 217 18 7 7150 7354 5548804 5548590 2.080000e-50 211
18 TraesCS6B01G018400 chr6A 90.714 140 11 1 108 247 5559199 5559062 1.260000e-42 185
19 TraesCS6B01G018400 chr6A 80.829 193 27 8 2127 2314 5555597 5555410 7.690000e-30 143
20 TraesCS6B01G018400 chr6D 89.463 1993 146 18 825 2787 6261454 6259496 0.000000e+00 2459
21 TraesCS6B01G018400 chr6D 86.143 1999 234 26 2818 4809 6259495 6257533 0.000000e+00 2117
22 TraesCS6B01G018400 chr6D 84.213 1970 266 25 1936 3888 6133817 6131876 0.000000e+00 1873
23 TraesCS6B01G018400 chr6D 85.925 1563 184 23 5815 7356 6116512 6114965 0.000000e+00 1635
24 TraesCS6B01G018400 chr6D 89.588 1239 121 5 5815 7050 6255926 6254693 0.000000e+00 1567
25 TraesCS6B01G018400 chr6D 91.817 831 50 10 1 830 6262315 6261502 0.000000e+00 1142
26 TraesCS6B01G018400 chr6D 85.614 1001 110 12 4815 5812 6257322 6256353 0.000000e+00 1020
27 TraesCS6B01G018400 chr6D 84.379 877 90 19 542 1401 6135435 6134589 0.000000e+00 817
28 TraesCS6B01G018400 chr6D 83.908 696 101 10 4810 5501 6118221 6117533 0.000000e+00 654
29 TraesCS6B01G018400 chr6D 87.234 517 47 14 1434 1937 6134421 6133911 8.280000e-159 571
30 TraesCS6B01G018400 chr6D 86.239 327 41 3 5494 5819 6117282 6116959 1.170000e-92 351
31 TraesCS6B01G018400 chr6D 82.630 403 42 14 92 489 6135848 6135469 1.530000e-86 331


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G018400 chr6B 11519525 11526880 7355 True 13585.000000 13585 100.000000 1 7356 1 chr6B.!!$R1 7355
1 TraesCS6B01G018400 chr6B 11414372 11417551 3179 True 843.333333 1561 85.298333 4810 7356 3 chr6B.!!$R2 2546
2 TraesCS6B01G018400 chr6B 11427379 11429825 2446 True 771.333333 963 84.803333 6 2318 3 chr6B.!!$R3 2312
3 TraesCS6B01G018400 chr6A 5472434 5473983 1549 True 1537.000000 1537 84.783000 5815 7356 1 chr6A.!!$R1 1541
4 TraesCS6B01G018400 chr6A 5477992 5481698 3706 True 1439.000000 2226 80.762500 201 3809 2 chr6A.!!$R2 3608
5 TraesCS6B01G018400 chr6A 5497798 5505543 7745 True 1282.000000 2715 82.815750 542 7356 4 chr6A.!!$R3 6814
6 TraesCS6B01G018400 chr6A 5548590 5559199 10609 True 552.500000 1347 85.555833 108 7354 6 chr6A.!!$R4 7246
7 TraesCS6B01G018400 chr6D 6254693 6262315 7622 True 1661.000000 2459 88.525000 1 7050 5 chr6D.!!$R3 7049
8 TraesCS6B01G018400 chr6D 6131876 6135848 3972 True 898.000000 1873 84.614000 92 3888 4 chr6D.!!$R2 3796
9 TraesCS6B01G018400 chr6D 6114965 6118221 3256 True 880.000000 1635 85.357333 4810 7356 3 chr6D.!!$R1 2546

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
396 412 0.105964 TGGTCCTGTAGCACACACAC 59.894 55.0 0.00 0.00 32.33 3.82 F
753 817 0.160182 CGCGTTTGACTGTAACGGAC 59.840 55.0 15.25 2.06 46.16 4.79 F
2439 4844 0.251787 GCCCTCCTTGGTTGTCCATT 60.252 55.0 0.00 0.00 43.91 3.16 F
2772 5183 0.250513 ACCGCTTCCACTCATCCTTC 59.749 55.0 0.00 0.00 0.00 3.46 F
3416 5828 0.035056 CCTGGCTTTTCCATCCTCGT 60.035 55.0 0.00 0.00 45.50 4.18 F
5059 7716 0.034186 TCCTTGGCAATTGGATCGCT 60.034 50.0 7.72 0.00 0.00 4.93 F
5163 7820 0.036388 CATTGGTGACTACGGTGGCT 60.036 55.0 0.00 0.00 0.00 4.75 F
5968 9602 0.662619 TTGCAAGCCACAAGAGTTCG 59.337 50.0 0.00 0.00 0.00 3.95 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2284 4408 0.240945 GGTGTCGCAACCCAAATCAG 59.759 55.0 0.00 0.00 33.79 2.90 R
2455 4860 0.028902 GCCGGTGAACACAAGTTGTC 59.971 55.0 5.27 0.00 37.51 3.18 R
3332 5744 0.109272 TCGTGATCAGAGCAACGACC 60.109 55.0 0.00 0.00 0.00 4.79 R
4591 7020 0.107993 CGCCATGAAGAGCTGAAGGA 60.108 55.0 0.00 0.00 0.00 3.36 R
5346 8005 0.178301 GAGGCCCTAGTACTGTTGCC 59.822 60.0 18.48 18.48 39.17 4.52 R
6246 9886 0.039618 GGATCTTCCCAAACTGCCCA 59.960 55.0 0.00 0.00 0.00 5.36 R
6333 9976 0.179032 TCCACGAAAAAGAGGCAGCA 60.179 50.0 0.00 0.00 0.00 4.41 R
7177 12437 0.042131 CCCCCTAGGAGGTGTGTACA 59.958 60.0 11.48 0.00 38.24 2.90 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 0.243636 GGTTTGATTGGAGTTGCGGG 59.756 55.000 0.00 0.00 0.00 6.13
267 276 5.344743 AAGTGCTTCCATCTCGAAGATAA 57.655 39.130 2.59 0.00 41.57 1.75
289 298 8.887036 ATAAAGTTTTTGTCTCATTGTTTCCC 57.113 30.769 0.00 0.00 0.00 3.97
290 299 5.930837 AGTTTTTGTCTCATTGTTTCCCA 57.069 34.783 0.00 0.00 0.00 4.37
310 319 2.567169 CACCCACATCACTGGTTCTAGA 59.433 50.000 0.00 0.00 0.00 2.43
311 320 2.567615 ACCCACATCACTGGTTCTAGAC 59.432 50.000 0.00 0.00 0.00 2.59
312 321 2.834549 CCCACATCACTGGTTCTAGACT 59.165 50.000 0.00 0.00 0.00 3.24
313 322 3.261897 CCCACATCACTGGTTCTAGACTT 59.738 47.826 0.00 0.00 0.00 3.01
324 333 2.960384 GTTCTAGACTTCCTCTAGGGGC 59.040 54.545 2.72 0.00 46.29 5.80
358 369 0.810031 ATACCGGACATGCTTCGTGC 60.810 55.000 9.46 0.00 43.25 5.34
396 412 0.105964 TGGTCCTGTAGCACACACAC 59.894 55.000 0.00 0.00 32.33 3.82
398 414 0.105964 GTCCTGTAGCACACACACCA 59.894 55.000 0.00 0.00 32.33 4.17
424 440 2.731571 CCCGCTCGAAGGATTCCCA 61.732 63.158 8.06 0.00 43.81 4.37
505 528 6.235664 AGAAAGGAATACAAACTCGCCTTTA 58.764 36.000 0.00 0.00 43.55 1.85
506 529 6.884836 AGAAAGGAATACAAACTCGCCTTTAT 59.115 34.615 0.00 0.00 43.55 1.40
507 530 7.393515 AGAAAGGAATACAAACTCGCCTTTATT 59.606 33.333 0.00 0.00 43.55 1.40
535 563 1.247419 TTTTGTGCAGGGGTATGCCG 61.247 55.000 0.00 0.00 45.91 5.69
560 588 0.468226 TTTCTTGGAGGCACGTGTCT 59.532 50.000 25.17 25.17 0.00 3.41
593 647 9.226606 TGGTTAATGTAGGTTTTGTATCTCTTG 57.773 33.333 0.00 0.00 0.00 3.02
610 664 6.906157 TCTCTTGAAAATCTTGGCTGATTT 57.094 33.333 11.32 11.32 45.32 2.17
736 796 0.732538 GTTGGGTGCATGCTTTACGC 60.733 55.000 20.33 16.91 39.77 4.42
753 817 0.160182 CGCGTTTGACTGTAACGGAC 59.840 55.000 15.25 2.06 46.16 4.79
755 819 0.780002 CGTTTGACTGTAACGGACGG 59.220 55.000 7.73 0.00 43.31 4.79
771 836 1.143838 CGGGTGTGCATGCTAGCTA 59.856 57.895 20.33 2.58 34.99 3.32
892 1107 2.750712 ACGCTCTCAACTCTCTACTTCC 59.249 50.000 0.00 0.00 0.00 3.46
981 1196 1.301401 CGGGGAAGAGTTTGACGCA 60.301 57.895 0.00 0.00 0.00 5.24
1216 1439 4.907034 CGACGGCCACCTCGATCG 62.907 72.222 9.36 9.36 31.24 3.69
1217 1440 3.823330 GACGGCCACCTCGATCGT 61.823 66.667 15.94 0.00 36.74 3.73
1218 1441 4.129737 ACGGCCACCTCGATCGTG 62.130 66.667 15.94 12.87 32.60 4.35
1219 1442 4.129737 CGGCCACCTCGATCGTGT 62.130 66.667 15.94 10.94 0.00 4.49
1220 1443 2.509336 GGCCACCTCGATCGTGTG 60.509 66.667 24.05 24.05 0.00 3.82
1221 1444 2.261671 GCCACCTCGATCGTGTGT 59.738 61.111 26.64 17.35 0.00 3.72
1222 1445 1.374252 GCCACCTCGATCGTGTGTT 60.374 57.895 26.64 8.06 0.00 3.32
1223 1446 1.626654 GCCACCTCGATCGTGTGTTG 61.627 60.000 26.64 18.43 0.00 3.33
1224 1447 1.014044 CCACCTCGATCGTGTGTTGG 61.014 60.000 26.64 19.97 0.00 3.77
1225 1448 0.319555 CACCTCGATCGTGTGTTGGT 60.320 55.000 23.24 16.11 0.00 3.67
1226 1449 0.391597 ACCTCGATCGTGTGTTGGTT 59.608 50.000 15.94 0.00 0.00 3.67
1229 1452 1.129809 CGATCGTGTGTTGGTTCGC 59.870 57.895 7.03 0.00 0.00 4.70
1375 1604 0.531311 AAGCGTCTCGGGAAACGTTT 60.531 50.000 14.57 14.57 44.69 3.60
1415 1691 2.103263 GCCCTCGTATCTCCATGTTCTT 59.897 50.000 0.00 0.00 0.00 2.52
1416 1692 3.432326 GCCCTCGTATCTCCATGTTCTTT 60.432 47.826 0.00 0.00 0.00 2.52
1432 1798 8.023128 CCATGTTCTTTCTTGTTTGTAGGTATG 58.977 37.037 0.00 0.00 0.00 2.39
1449 1815 4.159321 AGGTATGGATCTGATAGATGTGCG 59.841 45.833 0.00 0.00 34.53 5.34
1454 1820 0.455815 TCTGATAGATGTGCGTGCGT 59.544 50.000 0.00 0.00 0.00 5.24
1474 1840 3.179048 GTGTTTTTGTGCAGTGTTCTCC 58.821 45.455 0.00 0.00 0.00 3.71
1507 1873 0.614979 TGGAGACGAGAAGAAGGGGG 60.615 60.000 0.00 0.00 0.00 5.40
1718 2084 1.660019 TTCCAACAAGGGCAAGGGGA 61.660 55.000 0.00 0.00 38.24 4.81
1759 2125 3.075148 GCTAGGGACCACAAAGAAGAAC 58.925 50.000 0.00 0.00 0.00 3.01
1877 2254 7.730332 TCAACTACATGATACCTATCTGTGGAT 59.270 37.037 0.00 0.00 32.42 3.41
2020 2531 0.963962 ATGTGGCCAAACTTGCTGAG 59.036 50.000 7.24 0.00 0.00 3.35
2042 2566 0.612174 CCGAGTGGTCTCTCTTGGGA 60.612 60.000 0.00 0.00 38.45 4.37
2053 2577 0.761802 CTCTTGGGATAGGGACCAGC 59.238 60.000 0.00 0.00 38.16 4.85
2058 2582 0.689623 GGGATAGGGACCAGCTGATG 59.310 60.000 17.39 1.02 0.00 3.07
2116 2645 5.584649 TGCAAGTTGTATATACAAGTCAGCC 59.415 40.000 32.08 23.27 46.11 4.85
2120 2649 6.810911 AGTTGTATATACAAGTCAGCCTCTG 58.189 40.000 25.18 0.00 44.20 3.35
2148 4247 8.816640 CATGTGATGCATATTAGTAGTACACA 57.183 34.615 11.43 11.43 38.52 3.72
2149 4248 9.428097 CATGTGATGCATATTAGTAGTACACAT 57.572 33.333 14.19 14.19 42.96 3.21
2249 4348 9.148104 ACTCATATTGAATCGATGACATATGTG 57.852 33.333 14.43 19.72 0.00 3.21
2284 4408 6.757478 GGATTGTTCTGTTTAGGTAGCTCTAC 59.243 42.308 0.00 0.00 35.40 2.59
2339 4486 3.309436 TTCCACTCCCGTCGCATGG 62.309 63.158 0.00 0.00 0.00 3.66
2347 4494 2.584418 CGTCGCATGGGCTCTCTG 60.584 66.667 4.59 0.00 38.10 3.35
2369 4774 3.268032 CTCCCCTTGCCCCTTGGT 61.268 66.667 0.00 0.00 0.00 3.67
2400 4805 2.657237 CCCCAGTCCACTCGTGTC 59.343 66.667 0.00 0.00 0.00 3.67
2403 4808 2.258591 CAGTCCACTCGTGTCGGG 59.741 66.667 6.35 0.00 0.00 5.14
2439 4844 0.251787 GCCCTCCTTGGTTGTCCATT 60.252 55.000 0.00 0.00 43.91 3.16
2455 4860 3.367025 GTCCATTTCTAGTCGTTTGACCG 59.633 47.826 0.00 0.00 46.74 4.79
2456 4861 3.256383 TCCATTTCTAGTCGTTTGACCGA 59.744 43.478 0.00 0.00 46.74 4.69
2466 4871 1.395608 CGTTTGACCGACAACTTGTGT 59.604 47.619 0.00 0.00 45.74 3.72
2535 4940 2.035442 GCTCTCCTTCGTTGGCCAC 61.035 63.158 3.88 0.00 0.00 5.01
2546 4951 1.134175 CGTTGGCCACTCTGTTTTTGT 59.866 47.619 3.88 0.00 0.00 2.83
2547 4952 2.416701 CGTTGGCCACTCTGTTTTTGTT 60.417 45.455 3.88 0.00 0.00 2.83
2553 4958 2.757868 CCACTCTGTTTTTGTTGTCCCA 59.242 45.455 0.00 0.00 0.00 4.37
2599 5010 2.672996 ACCACCGCAACCTCATGC 60.673 61.111 0.00 0.00 42.94 4.06
2605 5016 2.789917 GCAACCTCATGCTGCTCG 59.210 61.111 0.00 0.00 43.06 5.03
2666 5077 4.260620 CGATTTTCACGACTTCTTGTGGTT 60.261 41.667 0.00 0.00 35.41 3.67
2677 5088 6.036577 ACTTCTTGTGGTTGATTTGTGTTT 57.963 33.333 0.00 0.00 0.00 2.83
2702 5113 1.741770 GATGGTGTCACCCTCACGC 60.742 63.158 19.57 0.00 37.50 5.34
2703 5114 3.254024 ATGGTGTCACCCTCACGCC 62.254 63.158 19.57 0.54 43.66 5.68
2705 5116 3.986006 GTGTCACCCTCACGCCGA 61.986 66.667 0.00 0.00 0.00 5.54
2744 5155 0.384309 GACGATCTACGCCATGGTCA 59.616 55.000 14.67 0.00 46.94 4.02
2753 5164 0.686789 CGCCATGGTCATATCCTCCA 59.313 55.000 14.67 0.00 35.64 3.86
2772 5183 0.250513 ACCGCTTCCACTCATCCTTC 59.749 55.000 0.00 0.00 0.00 3.46
2803 5214 2.943036 TCCCCTGTTCAAACTACACC 57.057 50.000 0.00 0.00 0.00 4.16
2832 5243 1.452108 GGATTGGGCTCCACTTCCG 60.452 63.158 6.63 0.00 35.24 4.30
2876 5287 1.270412 CGTGTGGCAGTTGGGTAGTTA 60.270 52.381 0.00 0.00 0.00 2.24
2884 5295 3.686016 CAGTTGGGTAGTTACTTGGCAT 58.314 45.455 0.00 0.00 0.00 4.40
2948 5359 2.367567 ACCAACACTCGAGTATTGTGGT 59.632 45.455 29.23 26.77 30.94 4.16
2952 5363 2.029290 ACACTCGAGTATTGTGGTGACC 60.029 50.000 19.57 0.00 36.16 4.02
2969 5380 2.158370 TGACCAGGAGAGACAACTACCA 60.158 50.000 0.00 0.00 0.00 3.25
2985 5396 2.187946 CATGACCTGCCCCGTCTC 59.812 66.667 0.00 0.00 0.00 3.36
2990 5401 3.382832 CCTGCCCCGTCTCGTCTT 61.383 66.667 0.00 0.00 0.00 3.01
2998 5409 1.135746 CCCGTCTCGTCTTGTCTACAC 60.136 57.143 0.00 0.00 0.00 2.90
3041 5453 2.703430 CTAGCCCCTACCCCTGGT 59.297 66.667 0.00 0.00 40.16 4.00
3055 5467 2.118679 CCCTGGTCCATGTGAGTCATA 58.881 52.381 0.00 0.00 34.67 2.15
3112 5524 2.046023 CGCATGCTCCTGGACCAA 60.046 61.111 17.13 0.00 0.00 3.67
3162 5574 8.152246 TCCACTATATAAATAAAACCTCACCCG 58.848 37.037 0.00 0.00 0.00 5.28
3166 5578 1.541379 AATAAAACCTCACCCGCACC 58.459 50.000 0.00 0.00 0.00 5.01
3169 5581 0.696501 AAAACCTCACCCGCACCTAT 59.303 50.000 0.00 0.00 0.00 2.57
3203 5615 0.340558 TTCCCTTCCCCGACCATCTA 59.659 55.000 0.00 0.00 0.00 1.98
3204 5616 0.566176 TCCCTTCCCCGACCATCTAT 59.434 55.000 0.00 0.00 0.00 1.98
3205 5617 0.977395 CCCTTCCCCGACCATCTATC 59.023 60.000 0.00 0.00 0.00 2.08
3206 5618 0.977395 CCTTCCCCGACCATCTATCC 59.023 60.000 0.00 0.00 0.00 2.59
3217 5629 2.293856 ACCATCTATCCCCACTCAAGGT 60.294 50.000 0.00 0.00 0.00 3.50
3220 5632 1.132500 CTATCCCCACTCAAGGTCCC 58.868 60.000 0.00 0.00 0.00 4.46
3286 5698 2.509916 GGCTGCTCCCTCTCCATG 59.490 66.667 0.00 0.00 0.00 3.66
3345 5757 2.621338 GATTCATGGTCGTTGCTCTGA 58.379 47.619 0.00 0.00 0.00 3.27
3346 5758 2.768253 TTCATGGTCGTTGCTCTGAT 57.232 45.000 0.00 0.00 0.00 2.90
3350 5762 0.388520 TGGTCGTTGCTCTGATCACG 60.389 55.000 0.00 0.00 0.00 4.35
3406 5818 0.397564 CCCAAACATGCCTGGCTTTT 59.602 50.000 21.03 13.13 0.00 2.27
3413 5825 0.337428 ATGCCTGGCTTTTCCATCCT 59.663 50.000 21.03 0.00 45.50 3.24
3416 5828 0.035056 CCTGGCTTTTCCATCCTCGT 60.035 55.000 0.00 0.00 45.50 4.18
3420 5832 1.087501 GCTTTTCCATCCTCGTGTCC 58.912 55.000 0.00 0.00 0.00 4.02
3469 5881 3.840666 TCTGACCTGGATACTGCTTCTTT 59.159 43.478 0.00 0.00 37.61 2.52
3470 5882 4.287067 TCTGACCTGGATACTGCTTCTTTT 59.713 41.667 0.00 0.00 37.61 2.27
3475 5887 5.013599 ACCTGGATACTGCTTCTTTTTCTCT 59.986 40.000 0.00 0.00 37.61 3.10
3482 5894 2.224426 TGCTTCTTTTTCTCTACCGCCA 60.224 45.455 0.00 0.00 0.00 5.69
3484 5896 2.074547 TCTTTTTCTCTACCGCCACG 57.925 50.000 0.00 0.00 0.00 4.94
3526 5938 1.349688 GTGGTGGGAGAACACATGGTA 59.650 52.381 0.00 0.00 43.08 3.25
3548 5960 0.324738 TGGTTTTGTTGTGGGCCAGA 60.325 50.000 6.40 0.99 0.00 3.86
3605 6019 5.353123 GCATCCGACCTTGTTTTATCAACTA 59.647 40.000 0.00 0.00 0.00 2.24
3606 6020 6.038271 GCATCCGACCTTGTTTTATCAACTAT 59.962 38.462 0.00 0.00 0.00 2.12
3631 6045 2.893398 GAGGTTCATCTCGGCGGT 59.107 61.111 7.21 0.00 0.00 5.68
3674 6088 3.117131 GGGTCTATTTCCCCATCACCAAT 60.117 47.826 0.00 0.00 40.88 3.16
3680 6094 3.616343 TTCCCCATCACCAATGCATAT 57.384 42.857 0.00 0.00 33.71 1.78
3694 6108 0.672401 GCATATGGCCCATGCAATGC 60.672 55.000 26.48 12.84 46.47 3.56
3695 6109 0.682292 CATATGGCCCATGCAATGCA 59.318 50.000 11.44 11.44 44.97 3.96
3706 6120 2.556144 TGCAATGCACAAGAGAGAGT 57.444 45.000 2.72 0.00 31.71 3.24
3710 6124 4.220602 TGCAATGCACAAGAGAGAGTAGTA 59.779 41.667 2.72 0.00 31.71 1.82
3712 6126 6.096846 TGCAATGCACAAGAGAGAGTAGTATA 59.903 38.462 2.72 0.00 31.71 1.47
3737 6151 6.553953 TTAGATAATATAGCCGCAATGGGA 57.446 37.500 0.00 0.00 38.63 4.37
3820 6235 8.579682 AAGTGCAGAAAAATGATAACTTCAAC 57.420 30.769 0.00 0.00 38.03 3.18
3828 6243 1.072489 TGATAACTTCAACGCCCACCA 59.928 47.619 0.00 0.00 0.00 4.17
3857 6272 5.071519 CCTCCTCTCCAATGACTACATCAAT 59.928 44.000 0.00 0.00 41.93 2.57
3859 6274 5.426509 TCCTCTCCAATGACTACATCAATGT 59.573 40.000 0.70 0.70 41.93 2.71
3925 6340 4.644103 GATGAAATCATGAACCCCACTG 57.356 45.455 0.00 0.00 44.70 3.66
3950 6365 1.603172 CCCGCTCGTCAAGATGGATAC 60.603 57.143 0.00 0.00 0.00 2.24
4020 6435 0.545171 CCTCCATCCACTGTCATGCT 59.455 55.000 0.00 0.00 0.00 3.79
4067 6482 3.872696 TCACTACTACGACGGTTCCATA 58.127 45.455 0.00 0.00 0.00 2.74
4074 6489 2.029623 ACGACGGTTCCATATGCTACT 58.970 47.619 0.00 0.00 0.00 2.57
4078 6493 2.764010 ACGGTTCCATATGCTACTGTCA 59.236 45.455 11.87 0.00 0.00 3.58
4081 6496 4.319177 GGTTCCATATGCTACTGTCATCC 58.681 47.826 0.00 0.00 0.00 3.51
4086 6501 4.380531 CATATGCTACTGTCATCCGGTTT 58.619 43.478 0.00 0.00 33.63 3.27
4092 6508 2.253610 ACTGTCATCCGGTTTAGTGGA 58.746 47.619 0.00 0.00 38.95 4.02
4101 6517 3.330110 TCCGGTTTAGTGGAAATGGGTTA 59.670 43.478 0.00 0.00 0.00 2.85
4103 6519 4.329392 CGGTTTAGTGGAAATGGGTTAGT 58.671 43.478 0.00 0.00 0.00 2.24
4105 6521 5.335348 CGGTTTAGTGGAAATGGGTTAGTTG 60.335 44.000 0.00 0.00 0.00 3.16
4128 6544 2.215907 TGTTTTCAATGTGGTTGCCG 57.784 45.000 0.00 0.00 37.74 5.69
4140 6566 3.997397 TTGCCGACGCTGCCACTA 61.997 61.111 0.00 0.00 35.36 2.74
4175 6601 0.518636 CCTGCAGTCGACCAATTGTG 59.481 55.000 13.01 3.72 0.00 3.33
4187 6613 3.870419 GACCAATTGTGTTGTGTTGCATT 59.130 39.130 4.43 0.00 0.00 3.56
4193 6619 4.446994 TGTGTTGTGTTGCATTTGAAGA 57.553 36.364 0.00 0.00 0.00 2.87
4200 6626 3.507233 GTGTTGCATTTGAAGAGGATCCA 59.493 43.478 15.82 0.00 33.66 3.41
4234 6662 7.264221 TCAAGTTTTCAAAGCAGCTCAAATAA 58.736 30.769 0.00 0.00 0.00 1.40
4251 6680 7.389803 TCAAATAACCAATGTCATCGTCAAT 57.610 32.000 0.00 0.00 0.00 2.57
4254 6683 9.734620 CAAATAACCAATGTCATCGTCAATAAT 57.265 29.630 0.00 0.00 0.00 1.28
4284 6713 0.172803 CGACCCTTTTCCTCGATCGT 59.827 55.000 15.94 0.00 0.00 3.73
4321 6750 4.706616 TGGTCTCCCTAACCCTAAATTCT 58.293 43.478 0.00 0.00 35.84 2.40
4322 6751 5.857134 TGGTCTCCCTAACCCTAAATTCTA 58.143 41.667 0.00 0.00 35.84 2.10
4324 6753 5.221402 GGTCTCCCTAACCCTAAATTCTACG 60.221 48.000 0.00 0.00 0.00 3.51
4338 6767 2.360726 TACGTGCGCTCTCCCTCA 60.361 61.111 9.73 0.00 0.00 3.86
4352 6781 0.679002 CCCTCATGCAACACTCCCTG 60.679 60.000 0.00 0.00 0.00 4.45
4403 6832 4.422073 TTGGTGGTATAGGAGCAAGATG 57.578 45.455 0.00 0.00 37.28 2.90
4411 6840 7.769044 GTGGTATAGGAGCAAGATGTTCTTTTA 59.231 37.037 0.00 0.00 37.28 1.52
4420 6849 6.260050 AGCAAGATGTTCTTTTACAAACTCGA 59.740 34.615 0.00 0.00 33.78 4.04
4423 6852 7.190920 AGATGTTCTTTTACAAACTCGAAGG 57.809 36.000 0.00 0.00 0.00 3.46
4496 6925 3.174790 GATTGCATGCCTCAATCGC 57.825 52.632 16.68 0.00 39.98 4.58
4513 6942 0.965363 CGCAATGGGGTTAAGCACCT 60.965 55.000 4.11 0.00 46.38 4.00
4523 6952 1.180456 TTAAGCACCTCACCCGTCGA 61.180 55.000 0.00 0.00 0.00 4.20
4559 6988 3.455910 CCCTTCATGACTTCTACCATCCA 59.544 47.826 0.00 0.00 0.00 3.41
4565 6994 2.838202 TGACTTCTACCATCCACTTCCC 59.162 50.000 0.00 0.00 0.00 3.97
4567 6996 2.108168 CTTCTACCATCCACTTCCCGA 58.892 52.381 0.00 0.00 0.00 5.14
4588 7017 1.332686 CATGAAGATGTCGGTGCATGG 59.667 52.381 0.00 0.00 31.89 3.66
4591 7020 0.394762 AAGATGTCGGTGCATGGCAT 60.395 50.000 8.53 8.53 41.91 4.40
4593 7022 1.789078 GATGTCGGTGCATGGCATCC 61.789 60.000 19.97 2.38 41.91 3.51
4596 7025 1.451927 TCGGTGCATGGCATCCTTC 60.452 57.895 0.00 0.00 41.91 3.46
4612 7047 2.033328 CTTCAGCTCTTCATGGCGCG 62.033 60.000 0.00 0.00 0.00 6.86
4634 7069 3.858989 CGCGCACACACACACACA 61.859 61.111 8.75 0.00 0.00 3.72
4635 7070 2.277247 GCGCACACACACACACAC 60.277 61.111 0.30 0.00 0.00 3.82
4636 7071 3.033166 GCGCACACACACACACACA 62.033 57.895 0.30 0.00 0.00 3.72
4637 7072 1.225991 CGCACACACACACACACAC 60.226 57.895 0.00 0.00 0.00 3.82
4638 7073 1.872468 GCACACACACACACACACA 59.128 52.632 0.00 0.00 0.00 3.72
4639 7074 0.239613 GCACACACACACACACACAA 59.760 50.000 0.00 0.00 0.00 3.33
4640 7075 1.335415 GCACACACACACACACACAAA 60.335 47.619 0.00 0.00 0.00 2.83
4641 7076 2.315011 CACACACACACACACACAAAC 58.685 47.619 0.00 0.00 0.00 2.93
4642 7077 1.950216 ACACACACACACACACAAACA 59.050 42.857 0.00 0.00 0.00 2.83
4643 7078 2.359214 ACACACACACACACACAAACAA 59.641 40.909 0.00 0.00 0.00 2.83
4647 7082 3.798878 CACACACACACACAAACAAACAA 59.201 39.130 0.00 0.00 0.00 2.83
4703 7138 1.142314 GCTCTCTGCCTCTGAGCTG 59.858 63.158 0.00 0.00 46.69 4.24
4729 7164 3.068732 GCAGTTTTCTTTGGAAGGAAGCT 59.931 43.478 0.00 0.00 37.98 3.74
4747 7182 3.173852 TTGGGACTACTCCAAGCCA 57.826 52.632 0.00 0.00 39.15 4.75
4749 7184 0.911769 TGGGACTACTCCAAGCCATG 59.088 55.000 0.00 0.00 38.52 3.66
4769 7204 6.205853 GCCATGATGGGTATTGTACGATTTTA 59.794 38.462 14.26 0.00 38.19 1.52
4779 7214 7.277098 GGTATTGTACGATTTTACTCAAGCAGA 59.723 37.037 0.00 0.00 0.00 4.26
4806 7242 4.223923 AGGGTCACTTCTCACCAATCTTAG 59.776 45.833 0.00 0.00 33.91 2.18
4825 7467 3.498774 AGTGTGAGGAGACATGCTTTT 57.501 42.857 0.00 0.00 0.00 2.27
4844 7486 1.089481 TTGCGCGGGTGATGAATCTC 61.089 55.000 8.83 0.00 0.00 2.75
4851 7493 3.440173 GCGGGTGATGAATCTCTGAAAAA 59.560 43.478 0.00 0.00 0.00 1.94
4860 7502 7.337689 TGATGAATCTCTGAAAAATCCATCGTT 59.662 33.333 0.00 0.00 32.84 3.85
4861 7503 6.845302 TGAATCTCTGAAAAATCCATCGTTG 58.155 36.000 0.00 0.00 0.00 4.10
4956 7599 6.100279 AGCATTAGATTACATCTCTTGGGTGA 59.900 38.462 0.00 0.00 40.76 4.02
4957 7600 6.939163 GCATTAGATTACATCTCTTGGGTGAT 59.061 38.462 0.00 0.00 40.76 3.06
4980 7623 0.853530 AGTGGTTTCCCTTCCTGCTT 59.146 50.000 0.00 0.00 0.00 3.91
4983 7626 0.540597 GGTTTCCCTTCCTGCTTGCT 60.541 55.000 0.00 0.00 0.00 3.91
5008 7664 3.413522 GGTTTAGGACCTCGACACG 57.586 57.895 0.00 0.00 45.55 4.49
5010 7666 1.402062 GGTTTAGGACCTCGACACGTC 60.402 57.143 0.00 0.00 45.55 4.34
5026 7682 0.795085 CGTCGAGTCGGTCTGTAGTT 59.205 55.000 13.54 0.00 0.00 2.24
5037 7694 4.051922 CGGTCTGTAGTTATCCTCAATGC 58.948 47.826 0.00 0.00 0.00 3.56
5043 7700 4.716784 TGTAGTTATCCTCAATGCTGTCCT 59.283 41.667 0.00 0.00 0.00 3.85
5044 7701 4.851639 AGTTATCCTCAATGCTGTCCTT 57.148 40.909 0.00 0.00 0.00 3.36
5059 7716 0.034186 TCCTTGGCAATTGGATCGCT 60.034 50.000 7.72 0.00 0.00 4.93
5064 7721 2.929641 TGGCAATTGGATCGCTTATCA 58.070 42.857 7.72 0.00 36.20 2.15
5117 7774 3.706594 CCTACCTCTTCATCCTAGTTGCA 59.293 47.826 0.00 0.00 0.00 4.08
5154 7811 0.107508 CATCCTCGCCATTGGTGACT 60.108 55.000 14.95 0.59 37.29 3.41
5163 7820 0.036388 CATTGGTGACTACGGTGGCT 60.036 55.000 0.00 0.00 0.00 4.75
5172 7829 1.852067 CTACGGTGGCTGCCAAACAC 61.852 60.000 25.23 10.91 34.18 3.32
5194 7852 2.422746 CCCCTCATCCCCTTATTGTCT 58.577 52.381 0.00 0.00 0.00 3.41
5195 7853 3.598264 CCCCTCATCCCCTTATTGTCTA 58.402 50.000 0.00 0.00 0.00 2.59
5198 7856 5.403512 CCCTCATCCCCTTATTGTCTAGTA 58.596 45.833 0.00 0.00 0.00 1.82
5254 7912 2.024176 TCACTAGCCTCACCCTCAAA 57.976 50.000 0.00 0.00 0.00 2.69
5262 7920 2.232208 GCCTCACCCTCAAATTTTCCAG 59.768 50.000 0.00 0.00 0.00 3.86
5346 8005 0.888619 TGTCTAGTGTCCAGCTTCCG 59.111 55.000 0.00 0.00 0.00 4.30
5385 8044 0.764890 TGCTCTACACCCACAAGCTT 59.235 50.000 0.00 0.00 34.11 3.74
5405 8064 4.733230 GCTTAGGATCATCGATCTCATCCG 60.733 50.000 16.61 8.31 39.98 4.18
5416 8075 3.726607 GATCTCATCCGTCTCATTGCTT 58.273 45.455 0.00 0.00 0.00 3.91
5419 8078 2.606725 CTCATCCGTCTCATTGCTTGTC 59.393 50.000 0.00 0.00 0.00 3.18
5443 8102 4.718961 AGACAAAATTGCTCACTAGGTGT 58.281 39.130 0.00 0.00 34.79 4.16
5467 8126 1.066071 GGCACACCTCTTTCCTAGACC 60.066 57.143 0.00 0.00 0.00 3.85
5470 8129 1.076677 ACACCTCTTTCCTAGACCGGA 59.923 52.381 9.46 0.00 0.00 5.14
5488 8147 3.692593 CCGGAAAGGGTAATTTTGTCGAT 59.307 43.478 0.00 0.00 35.97 3.59
5490 8149 4.155280 CGGAAAGGGTAATTTTGTCGATGT 59.845 41.667 0.00 0.00 0.00 3.06
5502 8674 3.961480 TGTCGATGTCATCCTCTTGTT 57.039 42.857 7.25 0.00 0.00 2.83
5507 8679 6.042777 GTCGATGTCATCCTCTTGTTCATTA 58.957 40.000 7.25 0.00 0.00 1.90
5509 8681 7.225538 GTCGATGTCATCCTCTTGTTCATTAAT 59.774 37.037 7.25 0.00 0.00 1.40
5534 8706 5.536951 ACCACCTACTACCTAGTCTCTCTA 58.463 45.833 0.00 0.00 37.73 2.43
5540 8712 6.270463 CCTACTACCTAGTCTCTCTATGGTCA 59.730 46.154 0.00 0.00 37.73 4.02
5541 8713 6.773583 ACTACCTAGTCTCTCTATGGTCAT 57.226 41.667 0.00 0.00 34.48 3.06
5549 8721 5.779260 AGTCTCTCTATGGTCATATGCACAT 59.221 40.000 13.91 13.91 0.00 3.21
5559 8731 4.060900 GTCATATGCACATCGAGATTGGT 58.939 43.478 0.00 0.00 0.00 3.67
5647 8820 1.137675 CTCTGATGCCTCGTTCATGGA 59.862 52.381 0.00 0.00 0.00 3.41
5764 8937 5.644188 TCTTCCTTTGGTTCTTCCATCATT 58.356 37.500 0.00 0.00 46.60 2.57
5826 9454 3.539338 GCATATGGCTTTCCCCCTT 57.461 52.632 4.56 0.00 40.25 3.95
5917 9545 9.488762 TGAACTACTCTAATTCTCCAATAAGGA 57.511 33.333 0.00 0.00 46.75 3.36
5966 9600 2.057137 TCTTGCAAGCCACAAGAGTT 57.943 45.000 21.99 0.00 46.46 3.01
5967 9601 1.949525 TCTTGCAAGCCACAAGAGTTC 59.050 47.619 21.99 0.00 46.46 3.01
5968 9602 0.662619 TTGCAAGCCACAAGAGTTCG 59.337 50.000 0.00 0.00 0.00 3.95
5970 9604 0.884704 GCAAGCCACAAGAGTTCGGA 60.885 55.000 0.00 0.00 0.00 4.55
5985 9620 5.578727 AGAGTTCGGATTTTCAAGAAGATCG 59.421 40.000 7.10 4.12 34.00 3.69
5988 9623 3.618594 TCGGATTTTCAAGAAGATCGCAG 59.381 43.478 7.10 3.02 34.00 5.18
5993 9628 1.500474 TCAAGAAGATCGCAGGGGAT 58.500 50.000 0.00 0.00 0.00 3.85
6011 9646 7.337167 CAGGGGATAAAGGATCTCAATATGAG 58.663 42.308 0.88 0.88 45.59 2.90
6172 9808 3.451902 TGGAGATCAAAATTCCCAATGCC 59.548 43.478 0.00 0.00 0.00 4.40
6185 9821 5.590976 TCCCAATGCCATGTATATTGGTA 57.409 39.130 21.56 10.88 45.92 3.25
6191 9831 8.246180 CCAATGCCATGTATATTGGTAGAATTC 58.754 37.037 17.92 0.00 43.61 2.17
6207 9847 7.778853 TGGTAGAATTCGGTTAGAAGTAGAGAT 59.221 37.037 0.00 0.00 42.92 2.75
6215 9855 5.297278 CGGTTAGAAGTAGAGATAGCACTGT 59.703 44.000 0.00 0.00 0.00 3.55
6246 9886 9.899661 TCATGGCAAGTAGTATAAGTAATTTGT 57.100 29.630 0.00 0.00 0.00 2.83
6277 9917 3.333680 TGGGAAGATCCTAGTTTTTGGCT 59.666 43.478 0.00 0.00 36.57 4.75
6278 9918 3.696548 GGGAAGATCCTAGTTTTTGGCTG 59.303 47.826 0.00 0.00 36.57 4.85
6295 9935 2.158943 GGCTGGCTAACTAATCGAGGTT 60.159 50.000 0.00 0.00 0.00 3.50
6333 9976 9.530633 CTACTTATTCTTAGGTTTTGATAGCGT 57.469 33.333 0.00 0.00 0.00 5.07
6383 10026 1.617018 CCGTCATCAAGGAGGAGGCA 61.617 60.000 0.00 0.00 28.86 4.75
6406 10050 2.695666 CACAGAAGTATCTCATCCCCGT 59.304 50.000 0.00 0.00 32.03 5.28
6410 10054 5.244178 ACAGAAGTATCTCATCCCCGTAATC 59.756 44.000 0.00 0.00 32.03 1.75
6503 10165 1.588082 CACTCTTGGTGCCCAATGC 59.412 57.895 7.06 0.00 43.07 3.56
6505 10167 2.676121 TCTTGGTGCCCAATGCCG 60.676 61.111 7.06 0.00 43.07 5.69
6516 10178 0.893270 CCAATGCCGTCTTTGGTGGA 60.893 55.000 3.12 0.00 40.62 4.02
6523 10185 1.344763 CCGTCTTTGGTGGAGACTTCT 59.655 52.381 3.17 0.00 41.02 2.85
6530 10192 1.343069 GGTGGAGACTTCTGTGGAGT 58.657 55.000 0.00 0.00 0.00 3.85
6531 10193 1.001406 GGTGGAGACTTCTGTGGAGTG 59.999 57.143 0.00 0.00 0.00 3.51
6553 10215 3.077359 GCTAAGTGGCTGCTATAATGGG 58.923 50.000 0.00 0.00 0.00 4.00
6556 10218 1.073025 TGGCTGCTATAATGGGCCG 59.927 57.895 0.00 0.00 45.06 6.13
6582 10244 4.397420 ACACCTGCATCAACATAACAAGA 58.603 39.130 0.00 0.00 0.00 3.02
6616 10278 5.382618 TGACGATGTCTAGGATCATGATG 57.617 43.478 14.30 0.00 33.15 3.07
6636 10298 3.355378 TGCCGATTCATCCATTGACTTT 58.645 40.909 0.00 0.00 32.84 2.66
6668 10330 6.042093 AGCATAGGATCGAATTACTGGAGAAA 59.958 38.462 0.00 0.00 0.00 2.52
6699 10361 5.799827 TGGAAAATTTAGTGTTCCCCTTG 57.200 39.130 3.89 0.00 40.16 3.61
6789 10456 0.537371 GGCTTGGTAGTTGTGGCAGT 60.537 55.000 0.00 0.00 0.00 4.40
6894 10562 8.408043 TGATCAATAACAAGGTCATGAACTTT 57.592 30.769 23.52 12.80 35.91 2.66
6922 10590 1.480212 TTGCGAGGTCAGGGATGTGT 61.480 55.000 0.00 0.00 0.00 3.72
6933 10601 4.040952 GTCAGGGATGTGTTAGCCTATGAT 59.959 45.833 0.00 0.00 34.61 2.45
6944 10612 3.550437 AGCCTATGATGTTGACTGGAC 57.450 47.619 0.00 0.00 0.00 4.02
6945 10613 2.840038 AGCCTATGATGTTGACTGGACA 59.160 45.455 0.00 0.00 0.00 4.02
6947 10615 4.080129 AGCCTATGATGTTGACTGGACAAT 60.080 41.667 0.00 0.00 32.36 2.71
6949 10617 6.000219 GCCTATGATGTTGACTGGACAATAT 59.000 40.000 0.00 0.00 35.08 1.28
7001 10673 5.269505 AGACGAGCACAATAGAAGCTAAT 57.730 39.130 0.00 0.00 39.02 1.73
7003 10675 5.751028 AGACGAGCACAATAGAAGCTAATTC 59.249 40.000 0.00 0.00 39.02 2.17
7010 10682 8.910944 AGCACAATAGAAGCTAATTCAATTGAT 58.089 29.630 9.40 0.00 40.67 2.57
7056 10728 5.574970 AAGAGGAGATTGAGGTTTTGTCT 57.425 39.130 0.00 0.00 0.00 3.41
7060 10732 3.057946 GGAGATTGAGGTTTTGTCTGTGC 60.058 47.826 0.00 0.00 0.00 4.57
7062 10734 3.316308 AGATTGAGGTTTTGTCTGTGCAC 59.684 43.478 10.75 10.75 0.00 4.57
7077 10749 4.581409 TCTGTGCACGTACAATATAGGCTA 59.419 41.667 13.13 0.00 0.00 3.93
7080 10752 6.285224 TGTGCACGTACAATATAGGCTAAAT 58.715 36.000 13.13 0.00 0.00 1.40
7082 10754 7.281324 TGTGCACGTACAATATAGGCTAAATTT 59.719 33.333 13.13 0.00 0.00 1.82
7100 10772 3.467374 TTTTTGCCAACTAAGCCCTTG 57.533 42.857 0.00 0.00 0.00 3.61
7112 10786 2.896745 AGCCCTTGCAAACAAAGAAG 57.103 45.000 0.00 0.00 41.13 2.85
7156 10834 9.799223 ATAGGGAAGTTCTATATTGCCCTAATA 57.201 33.333 0.00 0.00 46.46 0.98
7169 12429 4.141287 TGCCCTAATAAATCAACGATGGG 58.859 43.478 0.00 0.00 35.47 4.00
7172 12432 6.177610 GCCCTAATAAATCAACGATGGGATA 58.822 40.000 0.00 0.00 34.34 2.59
7182 12453 6.718522 TCAACGATGGGATAATAGTGTACA 57.281 37.500 0.00 0.00 0.00 2.90
7184 12455 6.097129 TCAACGATGGGATAATAGTGTACACA 59.903 38.462 27.06 13.77 0.00 3.72
7185 12456 5.839621 ACGATGGGATAATAGTGTACACAC 58.160 41.667 27.06 4.51 46.77 3.82
7208 12480 4.104261 CCTCCTAGGGGGTATGGTAAAAAG 59.896 50.000 20.98 0.00 36.25 2.27
7282 12554 0.035056 AGGGCTGAGGTTGTACATGC 60.035 55.000 0.00 0.00 0.00 4.06
7330 12602 1.152756 AGCCACCACCACAAGAACC 60.153 57.895 0.00 0.00 0.00 3.62
7331 12603 2.551912 GCCACCACCACAAGAACCG 61.552 63.158 0.00 0.00 0.00 4.44
7350 12622 2.672651 CACATGCGGTGCAGGGAA 60.673 61.111 8.37 0.00 45.01 3.97
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 0.958091 CCGCAACTCCAATCAAACCA 59.042 50.000 0.00 0.00 0.00 3.67
23 24 3.003480 CCGTCCTTTCTTCCAGAATGTC 58.997 50.000 0.00 0.00 33.67 3.06
267 276 6.106003 GTGGGAAACAATGAGACAAAAACTT 58.894 36.000 0.00 0.00 0.00 2.66
289 298 2.567169 TCTAGAACCAGTGATGTGGGTG 59.433 50.000 0.00 0.00 37.79 4.61
290 299 2.567615 GTCTAGAACCAGTGATGTGGGT 59.432 50.000 0.00 0.00 41.71 4.51
310 319 3.142977 TGATAGATGCCCCTAGAGGAAGT 59.857 47.826 0.00 0.00 38.24 3.01
311 320 3.784178 TGATAGATGCCCCTAGAGGAAG 58.216 50.000 0.00 0.00 38.24 3.46
312 321 3.923273 TGATAGATGCCCCTAGAGGAA 57.077 47.619 0.00 0.00 38.24 3.36
313 322 3.567441 CCATGATAGATGCCCCTAGAGGA 60.567 52.174 0.00 0.00 38.24 3.71
324 333 3.055167 TCCGGTATTGCCCATGATAGATG 60.055 47.826 0.00 0.00 0.00 2.90
396 412 1.595993 TTCGAGCGGGAGAAGTCTGG 61.596 60.000 0.00 0.00 0.00 3.86
398 414 1.316706 CCTTCGAGCGGGAGAAGTCT 61.317 60.000 10.78 0.00 41.51 3.24
424 440 0.178921 TGCCAGAGGAGAAGACCACT 60.179 55.000 0.00 0.00 0.00 4.00
514 537 1.554617 GGCATACCCCTGCACAAAAAT 59.445 47.619 0.00 0.00 44.12 1.82
517 540 1.677300 CGGCATACCCCTGCACAAA 60.677 57.895 0.00 0.00 44.12 2.83
519 542 2.535485 CTTCGGCATACCCCTGCACA 62.535 60.000 0.00 0.00 44.12 4.57
535 563 1.135575 CGTGCCTCCAAGAAATGCTTC 60.136 52.381 0.00 0.00 33.60 3.86
560 588 4.938575 AACCTACATTAACCATGGTCCA 57.061 40.909 20.07 8.26 37.17 4.02
643 698 2.126888 GCGGTGCATCCACAAACG 60.127 61.111 0.00 0.00 43.88 3.60
701 758 8.673456 TGCACCCAACTATCTATATTGGTATA 57.327 34.615 1.85 0.00 41.18 1.47
706 766 5.942236 AGCATGCACCCAACTATCTATATTG 59.058 40.000 21.98 0.00 0.00 1.90
711 771 3.931907 AAGCATGCACCCAACTATCTA 57.068 42.857 21.98 0.00 0.00 1.98
753 817 1.143838 TAGCTAGCATGCACACCCG 59.856 57.895 21.98 2.10 34.99 5.28
755 819 2.748605 CTAGTAGCTAGCATGCACACC 58.251 52.381 21.98 4.99 34.99 4.16
967 1182 1.154836 CGCGTGCGTCAAACTCTTC 60.155 57.895 6.00 0.00 34.35 2.87
1029 1251 0.814010 CCGTCCCCATCAATTCGTCC 60.814 60.000 0.00 0.00 0.00 4.79
1143 1365 3.458163 GATGGACGGAGCGGACCA 61.458 66.667 2.30 2.30 40.14 4.02
1216 1439 2.052237 CTGCGCGAACCAACACAC 60.052 61.111 12.10 0.00 0.00 3.82
1217 1440 2.512745 ACTGCGCGAACCAACACA 60.513 55.556 12.10 0.00 0.00 3.72
1218 1441 2.052237 CACTGCGCGAACCAACAC 60.052 61.111 12.10 0.00 0.00 3.32
1219 1442 2.202946 TCACTGCGCGAACCAACA 60.203 55.556 12.10 0.00 0.00 3.33
1220 1443 2.248431 GTCACTGCGCGAACCAAC 59.752 61.111 12.10 0.00 0.00 3.77
1221 1444 3.334751 CGTCACTGCGCGAACCAA 61.335 61.111 12.10 0.00 0.00 3.67
1229 1452 4.025401 GGTTTGGCCGTCACTGCG 62.025 66.667 0.00 0.00 0.00 5.18
1253 1476 1.153667 CTCTCTCACCGCTTCTGCC 60.154 63.158 0.00 0.00 35.36 4.85
1415 1691 7.252612 TCAGATCCATACCTACAAACAAGAA 57.747 36.000 0.00 0.00 0.00 2.52
1416 1692 6.867519 TCAGATCCATACCTACAAACAAGA 57.132 37.500 0.00 0.00 0.00 3.02
1432 1798 2.064762 GCACGCACATCTATCAGATCC 58.935 52.381 0.00 0.00 31.32 3.36
1449 1815 0.639756 CACTGCACAAAAACACGCAC 59.360 50.000 0.00 0.00 0.00 5.34
1454 1820 2.159448 CGGAGAACACTGCACAAAAACA 60.159 45.455 0.00 0.00 0.00 2.83
1474 1840 4.193334 TCCATGCTCTCGTCGCCG 62.193 66.667 0.00 0.00 0.00 6.46
1615 1981 3.736100 TCAGCGTTTGCCATGGCG 61.736 61.111 30.87 17.94 45.51 5.69
1620 1986 2.281484 GAGGGTCAGCGTTTGCCA 60.281 61.111 0.00 0.00 44.31 4.92
1845 2222 8.938883 AGATAGGTATCATGTAGTTGACCATTT 58.061 33.333 0.00 0.00 35.17 2.32
1886 2263 8.655092 CAACAAAACAACTAAGCATGAAGAAAA 58.345 29.630 0.00 0.00 0.00 2.29
2020 2531 1.407258 CCAAGAGAGACCACTCGGATC 59.593 57.143 0.00 0.00 46.64 3.36
2042 2566 0.268869 TCCCATCAGCTGGTCCCTAT 59.731 55.000 15.13 0.00 44.30 2.57
2053 2577 1.959985 AGCTACTCGTGATCCCATCAG 59.040 52.381 0.00 0.00 40.53 2.90
2107 2634 0.803117 CATGCACAGAGGCTGACTTG 59.197 55.000 0.00 0.00 35.18 3.16
2111 2640 0.616891 ATCACATGCACAGAGGCTGA 59.383 50.000 0.00 0.00 35.18 4.26
2211 4310 4.940463 TCAATATGAGTTACCACGCTACC 58.060 43.478 0.00 0.00 0.00 3.18
2249 4348 6.575162 AAACAGAACAATCCACTCCAATAC 57.425 37.500 0.00 0.00 0.00 1.89
2284 4408 0.240945 GGTGTCGCAACCCAAATCAG 59.759 55.000 0.00 0.00 33.79 2.90
2362 4511 4.410400 GTGGCGAGGGACCAAGGG 62.410 72.222 0.00 0.00 39.39 3.95
2365 4514 2.668632 GATGTGGCGAGGGACCAA 59.331 61.111 0.00 0.00 39.39 3.67
2366 4515 3.399181 GGATGTGGCGAGGGACCA 61.399 66.667 0.00 0.00 33.84 4.02
2400 4805 0.250727 AGGAATGTGTGGTGAACCCG 60.251 55.000 0.00 0.00 35.15 5.28
2403 4808 0.598065 GGCAGGAATGTGTGGTGAAC 59.402 55.000 0.00 0.00 0.00 3.18
2455 4860 0.028902 GCCGGTGAACACAAGTTGTC 59.971 55.000 5.27 0.00 37.51 3.18
2456 4861 1.381165 GGCCGGTGAACACAAGTTGT 61.381 55.000 1.64 1.64 41.74 3.32
2524 4929 1.757682 AAAACAGAGTGGCCAACGAA 58.242 45.000 7.24 0.00 0.00 3.85
2535 4940 4.157656 TCAACTGGGACAACAAAAACAGAG 59.842 41.667 0.00 0.00 38.70 3.35
2546 4951 0.555769 AAAGGGCTCAACTGGGACAA 59.444 50.000 0.00 0.00 38.70 3.18
2547 4952 0.110486 GAAAGGGCTCAACTGGGACA 59.890 55.000 0.00 0.00 0.00 4.02
2553 4958 0.405973 GGAAGGGAAAGGGCTCAACT 59.594 55.000 0.00 0.00 0.00 3.16
2677 5088 4.487714 GAGGGTGACACCATCTATTTGA 57.512 45.455 27.86 0.00 45.03 2.69
2688 5099 3.986006 TCGGCGTGAGGGTGACAC 61.986 66.667 6.85 0.00 35.26 3.67
2691 5102 3.680786 CTGTCGGCGTGAGGGTGA 61.681 66.667 6.85 0.00 0.00 4.02
2702 5113 2.432146 TGGGAGAGAATGAATCTGTCGG 59.568 50.000 0.00 0.00 46.76 4.79
2703 5114 3.452474 GTGGGAGAGAATGAATCTGTCG 58.548 50.000 0.00 0.00 46.76 4.35
2705 5116 3.099905 TCGTGGGAGAGAATGAATCTGT 58.900 45.455 0.00 0.00 38.96 3.41
2744 5155 0.759346 GTGGAAGCGGTGGAGGATAT 59.241 55.000 0.00 0.00 0.00 1.63
2753 5164 0.250513 GAAGGATGAGTGGAAGCGGT 59.749 55.000 0.00 0.00 0.00 5.68
2772 5183 0.968901 ACAGGGGATGCACAATGCTG 60.969 55.000 2.02 0.00 45.31 4.41
2803 5214 0.825010 GCCCAATCCCTATGGCACTG 60.825 60.000 0.00 0.00 43.46 3.66
2832 5243 1.671379 GAGCAAACGGTCCACTCCC 60.671 63.158 0.00 0.00 0.00 4.30
2857 5268 2.148768 GTAACTACCCAACTGCCACAC 58.851 52.381 0.00 0.00 0.00 3.82
2901 5312 2.233566 AGACATCAGGGGCAGCCAA 61.234 57.895 15.19 0.00 0.00 4.52
2948 5359 2.158370 TGGTAGTTGTCTCTCCTGGTCA 60.158 50.000 0.00 0.00 0.00 4.02
2952 5363 3.118956 GGTCATGGTAGTTGTCTCTCCTG 60.119 52.174 0.00 0.00 0.00 3.86
2969 5380 3.461773 CGAGACGGGGCAGGTCAT 61.462 66.667 9.40 0.00 36.87 3.06
2998 5409 1.065199 TGAGGGGAGCAAGCACATTAG 60.065 52.381 0.00 0.00 0.00 1.73
3008 5419 1.500474 CTAGGAATGTGAGGGGAGCA 58.500 55.000 0.00 0.00 0.00 4.26
3041 5453 1.837439 GGGGTGTATGACTCACATGGA 59.163 52.381 0.00 0.00 39.77 3.41
3055 5467 3.506743 TGGCATGTGGTGGGGTGT 61.507 61.111 0.00 0.00 0.00 4.16
3112 5524 4.098807 GGTAACAAACATGTTGACCAAGGT 59.901 41.667 12.82 0.00 33.59 3.50
3203 5615 4.171186 GGGACCTTGAGTGGGGAT 57.829 61.111 0.00 0.00 0.00 3.85
3217 5629 0.547712 CTTTGGGAGAGGAGTGGGGA 60.548 60.000 0.00 0.00 0.00 4.81
3220 5632 1.204113 AGGCTTTGGGAGAGGAGTGG 61.204 60.000 0.00 0.00 0.00 4.00
3284 5696 2.593148 TTTGACACGGTGGCGCAT 60.593 55.556 10.83 0.00 0.00 4.73
3286 5698 1.852067 AATCTTTGACACGGTGGCGC 61.852 55.000 13.48 0.00 0.00 6.53
3332 5744 0.109272 TCGTGATCAGAGCAACGACC 60.109 55.000 0.00 0.00 0.00 4.79
3345 5757 0.820871 GCAAGTCTCCCTCTCGTGAT 59.179 55.000 0.00 0.00 0.00 3.06
3346 5758 0.539669 TGCAAGTCTCCCTCTCGTGA 60.540 55.000 0.00 0.00 0.00 4.35
3350 5762 0.612744 AGCTTGCAAGTCTCCCTCTC 59.387 55.000 26.55 7.50 0.00 3.20
3357 5769 0.892814 GGCCAGAAGCTTGCAAGTCT 60.893 55.000 26.55 19.20 43.05 3.24
3361 5773 1.518056 CGAAGGCCAGAAGCTTGCAA 61.518 55.000 2.10 0.00 43.05 4.08
3406 5818 2.214122 TACGGGGACACGAGGATGGA 62.214 60.000 0.00 0.00 37.61 3.41
3413 5825 2.573083 GGGTTGTACGGGGACACGA 61.573 63.158 0.00 0.00 37.61 4.35
3416 5828 2.929477 GGGGGTTGTACGGGGACA 60.929 66.667 0.00 0.00 0.00 4.02
3420 5832 4.462280 GAGCGGGGGTTGTACGGG 62.462 72.222 0.00 0.00 0.00 5.28
3469 5881 2.263540 GGCGTGGCGGTAGAGAAA 59.736 61.111 0.00 0.00 0.00 2.52
3470 5882 2.992689 TGGCGTGGCGGTAGAGAA 60.993 61.111 0.00 0.00 0.00 2.87
3500 5912 1.053835 TGTTCTCCCACCACAGCTCA 61.054 55.000 0.00 0.00 0.00 4.26
3526 5938 1.334384 GGCCCACAACAAAACCAGGT 61.334 55.000 0.00 0.00 0.00 4.00
3583 5997 9.675464 TTTATAGTTGATAAAACAAGGTCGGAT 57.325 29.630 0.00 0.00 37.12 4.18
3605 6019 3.477210 GAGATGAACCTCGGCCTTTAT 57.523 47.619 0.00 0.00 0.00 1.40
3606 6020 2.981859 GAGATGAACCTCGGCCTTTA 57.018 50.000 0.00 0.00 0.00 1.85
3680 6094 2.173758 CTTGTGCATTGCATGGGCCA 62.174 55.000 15.49 9.61 41.91 5.36
3710 6124 9.507329 CCCATTGCGGCTATATTATCTAAATAT 57.493 33.333 0.00 0.00 0.00 1.28
3712 6126 7.573710 TCCCATTGCGGCTATATTATCTAAAT 58.426 34.615 0.00 0.00 0.00 1.40
3725 6139 2.275380 GGTGTTTCCCATTGCGGCT 61.275 57.895 0.00 0.00 0.00 5.52
3731 6145 2.944094 GCTACCGATGGTGTTTCCCATT 60.944 50.000 0.00 0.00 45.31 3.16
3811 6226 1.310904 GTTGGTGGGCGTTGAAGTTA 58.689 50.000 0.00 0.00 0.00 2.24
3828 6243 0.909610 TCATTGGAGAGGAGGGCGTT 60.910 55.000 0.00 0.00 0.00 4.84
3857 6272 0.732880 GCTCGACTAAAGCAGCGACA 60.733 55.000 0.00 0.00 39.61 4.35
3859 6274 1.092348 TAGCTCGACTAAAGCAGCGA 58.908 50.000 0.00 0.00 42.35 4.93
3933 6348 4.981389 GAATGTATCCATCTTGACGAGC 57.019 45.455 0.00 0.00 0.00 5.03
3950 6365 5.175491 CACCAATCGTTGTTCAAAAGGAATG 59.825 40.000 0.00 0.00 37.93 2.67
3951 6366 5.288804 CACCAATCGTTGTTCAAAAGGAAT 58.711 37.500 0.00 0.00 37.93 3.01
3958 6373 1.262950 CGAGCACCAATCGTTGTTCAA 59.737 47.619 0.00 0.00 35.48 2.69
4043 6458 2.421424 GGAACCGTCGTAGTAGTGATGT 59.579 50.000 0.00 0.00 0.00 3.06
4067 6482 3.451178 ACTAAACCGGATGACAGTAGCAT 59.549 43.478 9.46 0.00 0.00 3.79
4074 6489 3.773418 TTTCCACTAAACCGGATGACA 57.227 42.857 9.46 0.00 0.00 3.58
4078 6493 2.310647 ACCCATTTCCACTAAACCGGAT 59.689 45.455 9.46 0.00 0.00 4.18
4081 6496 4.329392 ACTAACCCATTTCCACTAAACCG 58.671 43.478 0.00 0.00 0.00 4.44
4086 6501 3.692690 GGCAACTAACCCATTTCCACTA 58.307 45.455 0.00 0.00 0.00 2.74
4101 6517 6.368815 CAACCACATTGAAAACAAGGCAACT 61.369 40.000 0.00 0.00 46.76 3.16
4103 6519 3.902881 ACCACATTGAAAACAAGGCAA 57.097 38.095 0.00 0.00 0.00 4.52
4105 6521 2.287644 GCAACCACATTGAAAACAAGGC 59.712 45.455 0.00 0.00 41.23 4.35
4163 6589 2.478709 GCAACACAACACAATTGGTCGA 60.479 45.455 10.83 0.00 0.00 4.20
4175 6601 4.305989 TCCTCTTCAAATGCAACACAAC 57.694 40.909 0.00 0.00 0.00 3.32
4187 6613 2.191400 CCCACTCTGGATCCTCTTCAA 58.809 52.381 14.23 0.00 40.96 2.69
4193 6619 0.252881 TTGAGCCCACTCTGGATCCT 60.253 55.000 14.23 0.00 43.85 3.24
4200 6626 3.297134 TTGAAAACTTGAGCCCACTCT 57.703 42.857 0.00 0.00 43.85 3.24
4234 6662 5.450412 GGCAATTATTGACGATGACATTGGT 60.450 40.000 9.36 0.47 0.00 3.67
4251 6680 1.280710 AGGGTCGTGATGTGGCAATTA 59.719 47.619 0.00 0.00 0.00 1.40
4254 6683 0.179004 AAAGGGTCGTGATGTGGCAA 60.179 50.000 0.00 0.00 0.00 4.52
4284 6713 4.543590 GAGACCATGTTTCTCCTTCAGA 57.456 45.455 9.50 0.00 34.50 3.27
4321 6750 1.753078 ATGAGGGAGAGCGCACGTA 60.753 57.895 11.47 0.00 0.00 3.57
4322 6751 3.071206 ATGAGGGAGAGCGCACGT 61.071 61.111 11.47 0.00 0.00 4.49
4324 6753 2.894387 GCATGAGGGAGAGCGCAC 60.894 66.667 11.47 2.25 0.00 5.34
4338 6767 2.036256 GGCCAGGGAGTGTTGCAT 59.964 61.111 0.00 0.00 0.00 3.96
4403 6832 5.505159 CCCACCTTCGAGTTTGTAAAAGAAC 60.505 44.000 0.00 0.00 0.00 3.01
4411 6840 2.721425 TTTCCCACCTTCGAGTTTGT 57.279 45.000 0.00 0.00 0.00 2.83
4420 6849 4.588951 GGAAGAAGTTTGATTTCCCACCTT 59.411 41.667 0.00 0.00 34.38 3.50
4423 6852 5.473039 CATGGAAGAAGTTTGATTTCCCAC 58.527 41.667 0.14 0.00 38.62 4.61
4513 6942 0.963225 TTTCATGTCTCGACGGGTGA 59.037 50.000 0.00 0.00 0.00 4.02
4515 6944 2.007049 GCATTTCATGTCTCGACGGGT 61.007 52.381 0.00 0.00 0.00 5.28
4523 6952 3.159213 TGAAGGGTGCATTTCATGTCT 57.841 42.857 7.04 0.00 0.00 3.41
4567 6996 2.011947 CATGCACCGACATCTTCATGT 58.988 47.619 0.00 0.00 46.64 3.21
4588 7017 1.948145 CCATGAAGAGCTGAAGGATGC 59.052 52.381 0.00 0.00 0.00 3.91
4591 7020 0.107993 CGCCATGAAGAGCTGAAGGA 60.108 55.000 0.00 0.00 0.00 3.36
4593 7022 1.720301 GCGCCATGAAGAGCTGAAG 59.280 57.895 0.00 0.00 0.00 3.02
4596 7025 4.233635 GCGCGCCATGAAGAGCTG 62.234 66.667 23.24 0.00 0.00 4.24
4617 7052 3.858989 TGTGTGTGTGTGTGCGCG 61.859 61.111 0.00 0.00 0.00 6.86
4618 7053 2.277247 GTGTGTGTGTGTGTGCGC 60.277 61.111 0.00 0.00 0.00 6.09
4619 7054 1.225991 GTGTGTGTGTGTGTGTGCG 60.226 57.895 0.00 0.00 0.00 5.34
4620 7055 0.239613 TTGTGTGTGTGTGTGTGTGC 59.760 50.000 0.00 0.00 0.00 4.57
4621 7056 2.287248 TGTTTGTGTGTGTGTGTGTGTG 60.287 45.455 0.00 0.00 0.00 3.82
4622 7057 1.950216 TGTTTGTGTGTGTGTGTGTGT 59.050 42.857 0.00 0.00 0.00 3.72
4623 7058 2.695613 TGTTTGTGTGTGTGTGTGTG 57.304 45.000 0.00 0.00 0.00 3.82
4624 7059 3.181486 TGTTTGTTTGTGTGTGTGTGTGT 60.181 39.130 0.00 0.00 0.00 3.72
4625 7060 3.375642 TGTTTGTTTGTGTGTGTGTGTG 58.624 40.909 0.00 0.00 0.00 3.82
4626 7061 3.717400 TGTTTGTTTGTGTGTGTGTGT 57.283 38.095 0.00 0.00 0.00 3.72
4627 7062 4.922692 AGATTGTTTGTTTGTGTGTGTGTG 59.077 37.500 0.00 0.00 0.00 3.82
4628 7063 5.132897 AGATTGTTTGTTTGTGTGTGTGT 57.867 34.783 0.00 0.00 0.00 3.72
4629 7064 7.026562 TCTAAGATTGTTTGTTTGTGTGTGTG 58.973 34.615 0.00 0.00 0.00 3.82
4630 7065 7.151999 TCTAAGATTGTTTGTTTGTGTGTGT 57.848 32.000 0.00 0.00 0.00 3.72
4631 7066 7.306167 GCATCTAAGATTGTTTGTTTGTGTGTG 60.306 37.037 0.00 0.00 0.00 3.82
4632 7067 6.697019 GCATCTAAGATTGTTTGTTTGTGTGT 59.303 34.615 0.00 0.00 0.00 3.72
4633 7068 6.144402 GGCATCTAAGATTGTTTGTTTGTGTG 59.856 38.462 0.00 0.00 0.00 3.82
4634 7069 6.040842 AGGCATCTAAGATTGTTTGTTTGTGT 59.959 34.615 0.00 0.00 0.00 3.72
4635 7070 6.449698 AGGCATCTAAGATTGTTTGTTTGTG 58.550 36.000 0.00 0.00 0.00 3.33
4636 7071 6.655078 AGGCATCTAAGATTGTTTGTTTGT 57.345 33.333 0.00 0.00 0.00 2.83
4637 7072 6.587608 GGAAGGCATCTAAGATTGTTTGTTTG 59.412 38.462 0.00 0.00 0.00 2.93
4638 7073 6.267471 TGGAAGGCATCTAAGATTGTTTGTTT 59.733 34.615 0.00 0.00 0.00 2.83
4639 7074 5.774690 TGGAAGGCATCTAAGATTGTTTGTT 59.225 36.000 0.00 0.00 0.00 2.83
4640 7075 5.324409 TGGAAGGCATCTAAGATTGTTTGT 58.676 37.500 0.00 0.00 0.00 2.83
4641 7076 5.888105 CTGGAAGGCATCTAAGATTGTTTG 58.112 41.667 0.00 0.00 0.00 2.93
4703 7138 3.636764 TCCTTCCAAAGAAAACTGCCTTC 59.363 43.478 0.00 0.00 0.00 3.46
4729 7164 1.281867 CATGGCTTGGAGTAGTCCCAA 59.718 52.381 14.26 7.56 43.15 4.12
4747 7182 8.208224 TGAGTAAAATCGTACAATACCCATCAT 58.792 33.333 0.00 0.00 0.00 2.45
4749 7184 8.428186 TTGAGTAAAATCGTACAATACCCATC 57.572 34.615 0.00 0.00 0.00 3.51
4769 7204 3.796866 ACCCTAGGTCTGCTTGAGT 57.203 52.632 8.29 0.00 0.00 3.41
4779 7214 1.149288 TGGTGAGAAGTGACCCTAGGT 59.851 52.381 8.29 0.00 39.44 3.08
4796 7232 4.160329 TGTCTCCTCACACTAAGATTGGT 58.840 43.478 0.00 0.00 0.00 3.67
4806 7242 3.854784 GCAAAAAGCATGTCTCCTCACAC 60.855 47.826 0.00 0.00 44.79 3.82
4813 7455 1.067199 CCGCGCAAAAAGCATGTCTC 61.067 55.000 8.75 0.00 46.13 3.36
4825 7467 1.078497 AGATTCATCACCCGCGCAA 60.078 52.632 8.75 0.00 0.00 4.85
4860 7502 2.825075 ATTGCATGAGCTCCACGGCA 62.825 55.000 12.15 12.51 42.74 5.69
4861 7503 2.117156 ATTGCATGAGCTCCACGGC 61.117 57.895 12.15 9.96 42.74 5.68
4946 7589 1.909302 ACCACTGGTATCACCCAAGAG 59.091 52.381 0.00 0.00 37.50 2.85
4980 7623 1.631898 GGTCCTAAACCCACCTTAGCA 59.368 52.381 0.00 0.00 42.85 3.49
5003 7659 1.154450 CAGACCGACTCGACGTGTC 60.154 63.158 17.76 17.76 35.45 3.67
5007 7663 0.795085 AACTACAGACCGACTCGACG 59.205 55.000 0.00 0.00 0.00 5.12
5008 7664 3.002144 GGATAACTACAGACCGACTCGAC 59.998 52.174 0.00 0.00 0.00 4.20
5010 7666 3.204526 AGGATAACTACAGACCGACTCG 58.795 50.000 0.00 0.00 0.00 4.18
5014 7670 4.202121 GCATTGAGGATAACTACAGACCGA 60.202 45.833 0.00 0.00 0.00 4.69
5026 7682 2.421952 GCCAAGGACAGCATTGAGGATA 60.422 50.000 0.00 0.00 38.00 2.59
5037 7694 1.402968 CGATCCAATTGCCAAGGACAG 59.597 52.381 0.00 0.00 33.57 3.51
5043 7700 3.286353 TGATAAGCGATCCAATTGCCAA 58.714 40.909 0.00 0.00 40.67 4.52
5044 7701 2.929641 TGATAAGCGATCCAATTGCCA 58.070 42.857 0.00 0.00 40.67 4.92
5059 7716 3.426787 TGACGGAGCCCTTTTTGATAA 57.573 42.857 0.00 0.00 0.00 1.75
5064 7721 0.539669 CCCTTGACGGAGCCCTTTTT 60.540 55.000 0.00 0.00 33.16 1.94
5117 7774 0.541392 TGAGGCGCTGGTGAACATAT 59.459 50.000 7.64 0.00 0.00 1.78
5154 7811 1.894756 GTGTTTGGCAGCCACCGTA 60.895 57.895 15.89 0.00 30.78 4.02
5194 7852 9.143155 TCTTCCACATATAGCAAGATTGTACTA 57.857 33.333 0.00 0.00 0.00 1.82
5195 7853 7.928706 GTCTTCCACATATAGCAAGATTGTACT 59.071 37.037 0.00 0.00 0.00 2.73
5198 7856 6.540189 GTGTCTTCCACATATAGCAAGATTGT 59.460 38.462 0.00 0.00 43.92 2.71
5201 7859 5.455326 GGGTGTCTTCCACATATAGCAAGAT 60.455 44.000 0.00 0.00 46.44 2.40
5225 7883 2.164422 TGAGGCTAGTGATTGTCGTGAG 59.836 50.000 0.00 0.00 0.00 3.51
5254 7912 4.322953 GGAATGAACATGCACCTGGAAAAT 60.323 41.667 0.00 0.00 0.00 1.82
5262 7920 2.715046 TGAGAGGAATGAACATGCACC 58.285 47.619 0.00 0.00 0.00 5.01
5309 7967 1.152830 AACCAAACACCGAGGCCAT 59.847 52.632 5.01 0.00 0.00 4.40
5346 8005 0.178301 GAGGCCCTAGTACTGTTGCC 59.822 60.000 18.48 18.48 39.17 4.52
5372 8031 1.985159 TGATCCTAAGCTTGTGGGTGT 59.015 47.619 9.86 1.96 0.00 4.16
5385 8044 3.942115 GACGGATGAGATCGATGATCCTA 59.058 47.826 18.75 0.11 39.66 2.94
5416 8075 6.166279 CCTAGTGAGCAATTTTGTCTAGACA 58.834 40.000 21.74 21.74 39.98 3.41
5419 8078 5.934625 ACACCTAGTGAGCAATTTTGTCTAG 59.065 40.000 0.96 0.00 36.96 2.43
5430 8089 0.250295 GCCACAACACCTAGTGAGCA 60.250 55.000 0.96 0.00 37.97 4.26
5443 8102 0.550914 AGGAAAGAGGTGTGCCACAA 59.449 50.000 0.00 0.00 35.86 3.33
5463 8122 4.077108 GACAAAATTACCCTTTCCGGTCT 58.923 43.478 0.00 0.00 37.34 3.85
5467 8126 4.155280 ACATCGACAAAATTACCCTTTCCG 59.845 41.667 0.00 0.00 0.00 4.30
5470 8129 6.127730 GGATGACATCGACAAAATTACCCTTT 60.128 38.462 9.31 0.00 0.00 3.11
5488 8147 6.599244 GGTCATTAATGAACAAGAGGATGACA 59.401 38.462 25.39 0.00 43.87 3.58
5502 8674 7.359849 ACTAGGTAGTAGGTGGTCATTAATGA 58.640 38.462 14.23 14.23 34.13 2.57
5507 8679 5.194132 AGAGACTAGGTAGTAGGTGGTCATT 59.806 44.000 0.00 0.00 36.50 2.57
5509 8681 4.110072 AGAGACTAGGTAGTAGGTGGTCA 58.890 47.826 0.00 0.00 36.50 4.02
5534 8706 4.548451 ATCTCGATGTGCATATGACCAT 57.452 40.909 6.97 7.06 0.00 3.55
5540 8712 4.248859 GCTACCAATCTCGATGTGCATAT 58.751 43.478 0.00 0.00 0.00 1.78
5541 8713 3.554960 GGCTACCAATCTCGATGTGCATA 60.555 47.826 0.00 0.00 0.00 3.14
5549 8721 1.123077 ATGCAGGCTACCAATCTCGA 58.877 50.000 0.00 0.00 0.00 4.04
5559 8731 0.471191 CCCACTCATCATGCAGGCTA 59.529 55.000 0.00 0.00 0.00 3.93
5615 8788 1.072806 GCATCAGAGGGGCACATGATA 59.927 52.381 7.10 0.00 31.35 2.15
5647 8820 5.185454 TGCTTAGCTAATACACTGCATGTT 58.815 37.500 6.64 0.00 43.19 2.71
5654 8827 5.614324 TCACCATGCTTAGCTAATACACT 57.386 39.130 6.64 0.00 0.00 3.55
5764 8937 1.381191 TGGAGATGGGCAGTCGCTA 60.381 57.895 0.00 0.00 38.60 4.26
5826 9454 9.853555 AATATGAGTTTTATTTGAAATGTCGCA 57.146 25.926 0.00 0.00 0.00 5.10
5927 9555 7.708322 TGCAAGAAGAGATGACTAACACATATC 59.292 37.037 0.00 0.00 36.58 1.63
5966 9600 3.595173 TGCGATCTTCTTGAAAATCCGA 58.405 40.909 0.00 0.00 0.00 4.55
5967 9601 3.242543 CCTGCGATCTTCTTGAAAATCCG 60.243 47.826 0.00 0.00 0.00 4.18
5968 9602 3.065925 CCCTGCGATCTTCTTGAAAATCC 59.934 47.826 0.00 0.00 0.00 3.01
5970 9604 3.019564 CCCCTGCGATCTTCTTGAAAAT 58.980 45.455 0.00 0.00 0.00 1.82
5985 9620 3.864789 TTGAGATCCTTTATCCCCTGC 57.135 47.619 0.00 0.00 34.90 4.85
6025 9661 2.174854 AGGGTCTGGTATTGTAATGCCC 59.825 50.000 8.88 0.00 40.06 5.36
6036 9672 3.474798 AGAGATGTCAAGGGTCTGGTA 57.525 47.619 0.00 0.00 0.00 3.25
6172 9808 9.923143 TCTAACCGAATTCTACCAATATACATG 57.077 33.333 3.52 0.00 0.00 3.21
6185 9821 7.502895 TGCTATCTCTACTTCTAACCGAATTCT 59.497 37.037 3.52 0.00 0.00 2.40
6191 9831 5.297278 ACAGTGCTATCTCTACTTCTAACCG 59.703 44.000 0.00 0.00 0.00 4.44
6207 9847 2.580962 TGCCATGAACAAACAGTGCTA 58.419 42.857 0.00 0.00 0.00 3.49
6215 9855 9.727859 TTACTTATACTACTTGCCATGAACAAA 57.272 29.630 0.00 0.00 0.00 2.83
6246 9886 0.039618 GGATCTTCCCAAACTGCCCA 59.960 55.000 0.00 0.00 0.00 5.36
6277 9917 4.463539 TGTGTAACCTCGATTAGTTAGCCA 59.536 41.667 3.79 2.22 34.36 4.75
6278 9918 4.802563 GTGTGTAACCTCGATTAGTTAGCC 59.197 45.833 3.79 0.24 34.36 3.93
6295 9935 8.701895 CCTAAGAATAAGTAGAATGGGTGTGTA 58.298 37.037 0.00 0.00 0.00 2.90
6313 9953 5.065218 CAGCACGCTATCAAAACCTAAGAAT 59.935 40.000 0.00 0.00 0.00 2.40
6333 9976 0.179032 TCCACGAAAAAGAGGCAGCA 60.179 50.000 0.00 0.00 0.00 4.41
6383 10026 3.133003 CGGGGATGAGATACTTCTGTGTT 59.867 47.826 0.00 0.00 30.30 3.32
6406 10050 1.903183 TGTCGTCCCCATGTGTGATTA 59.097 47.619 0.00 0.00 0.00 1.75
6410 10054 1.473257 CCTATGTCGTCCCCATGTGTG 60.473 57.143 0.00 0.00 0.00 3.82
6503 10165 1.344763 AGAAGTCTCCACCAAAGACGG 59.655 52.381 0.00 0.00 46.23 4.79
6505 10167 3.134458 CACAGAAGTCTCCACCAAAGAC 58.866 50.000 0.00 0.00 42.84 3.01
6516 10178 2.310779 TAGCCACTCCACAGAAGTCT 57.689 50.000 0.00 0.00 0.00 3.24
6523 10185 1.127567 AGCCACTTAGCCACTCCACA 61.128 55.000 0.00 0.00 0.00 4.17
6530 10192 3.496692 CCATTATAGCAGCCACTTAGCCA 60.497 47.826 0.00 0.00 0.00 4.75
6531 10193 3.077359 CCATTATAGCAGCCACTTAGCC 58.923 50.000 0.00 0.00 0.00 3.93
6556 10218 1.755179 ATGTTGATGCAGGTGTAGCC 58.245 50.000 0.00 0.00 37.58 3.93
6582 10244 3.056250 AGACATCGTCATTGAGCTTGTCT 60.056 43.478 14.79 14.79 37.95 3.41
6616 10278 4.376340 AAAAGTCAATGGATGAATCGGC 57.624 40.909 0.00 0.00 40.50 5.54
6659 10321 7.595819 TTTTCCAATGTGTAATTTCTCCAGT 57.404 32.000 0.00 0.00 0.00 4.00
6668 10330 9.705290 GGAACACTAAATTTTCCAATGTGTAAT 57.295 29.630 0.00 0.00 38.98 1.89
6747 10410 3.904571 TCACTGAATTTCAAGCATGCAC 58.095 40.909 21.98 1.30 0.00 4.57
6748 10411 4.490743 CATCACTGAATTTCAAGCATGCA 58.509 39.130 21.98 0.00 0.00 3.96
6749 10412 3.863424 CCATCACTGAATTTCAAGCATGC 59.137 43.478 10.51 10.51 0.00 4.06
6750 10413 3.863424 GCCATCACTGAATTTCAAGCATG 59.137 43.478 0.01 3.10 0.00 4.06
6789 10456 7.440856 GCATTAAAAATTTCTTCCAGGTGACAA 59.559 33.333 0.00 0.00 0.00 3.18
6834 10501 8.679344 TTATCCAAGCCCTAGATGTATTATCA 57.321 34.615 0.00 0.00 0.00 2.15
6914 10582 4.357918 ACATCATAGGCTAACACATCCC 57.642 45.455 0.00 0.00 0.00 3.85
6922 10590 4.469586 TGTCCAGTCAACATCATAGGCTAA 59.530 41.667 0.00 0.00 0.00 3.09
6933 10601 5.495640 TGCACATATATTGTCCAGTCAACA 58.504 37.500 0.00 0.00 36.00 3.33
6965 10633 0.325296 TCGTCTAGCCACCATTCCCT 60.325 55.000 0.00 0.00 0.00 4.20
6994 10666 6.815142 GCTGGTTTGATCAATTGAATTAGCTT 59.185 34.615 13.09 0.00 0.00 3.74
7001 10673 5.336929 CCTCATGCTGGTTTGATCAATTGAA 60.337 40.000 13.09 0.00 0.00 2.69
7003 10675 4.158949 TCCTCATGCTGGTTTGATCAATTG 59.841 41.667 9.40 0.00 0.00 2.32
7010 10682 1.361204 TCCTCCTCATGCTGGTTTGA 58.639 50.000 4.83 0.00 0.00 2.69
7056 10728 3.812156 AGCCTATATTGTACGTGCACA 57.188 42.857 18.64 0.00 0.00 4.57
7060 10732 8.953990 GCAAAAATTTAGCCTATATTGTACGTG 58.046 33.333 0.00 0.00 0.00 4.49
7062 10734 8.502161 GGCAAAAATTTAGCCTATATTGTACG 57.498 34.615 21.27 0.00 44.92 3.67
7077 10749 4.705110 AGGGCTTAGTTGGCAAAAATTT 57.295 36.364 0.00 0.00 0.00 1.82
7080 10752 2.484594 GCAAGGGCTTAGTTGGCAAAAA 60.485 45.455 0.00 0.00 36.96 1.94
7082 10754 0.678950 GCAAGGGCTTAGTTGGCAAA 59.321 50.000 0.00 0.00 36.96 3.68
7088 10760 3.704061 TCTTTGTTTGCAAGGGCTTAGTT 59.296 39.130 0.00 0.00 41.91 2.24
7090 10762 4.202151 ACTTCTTTGTTTGCAAGGGCTTAG 60.202 41.667 0.00 0.00 41.91 2.18
7093 10765 2.110578 ACTTCTTTGTTTGCAAGGGCT 58.889 42.857 0.00 0.00 41.91 5.19
7112 10786 6.440436 TCCCTATTTTTCGTAGCAAACAAAC 58.560 36.000 0.00 0.00 0.00 2.93
7124 10798 8.290325 GGCAATATAGAACTTCCCTATTTTTCG 58.710 37.037 0.00 0.00 0.00 3.46
7156 10834 8.208224 TGTACACTATTATCCCATCGTTGATTT 58.792 33.333 0.00 0.00 0.00 2.17
7169 12429 6.208994 CCCTAGGAGGTGTGTACACTATTATC 59.791 46.154 25.60 15.50 45.73 1.75
7172 12432 4.287552 CCCTAGGAGGTGTGTACACTATT 58.712 47.826 25.60 11.37 45.73 1.73
7176 12436 1.192428 CCCCTAGGAGGTGTGTACAC 58.808 60.000 19.36 19.36 40.00 2.90
7177 12437 0.042131 CCCCCTAGGAGGTGTGTACA 59.958 60.000 11.48 0.00 38.24 2.90
7180 12451 1.024536 ATACCCCCTAGGAGGTGTGT 58.975 55.000 24.69 8.02 39.89 3.72
7182 12453 0.267960 CCATACCCCCTAGGAGGTGT 59.732 60.000 24.69 15.79 39.89 4.16
7184 12455 1.945786 TACCATACCCCCTAGGAGGT 58.054 55.000 20.21 20.21 40.35 3.85
7185 12456 3.355857 TTTACCATACCCCCTAGGAGG 57.644 52.381 11.48 9.67 39.89 4.30
7188 12459 4.725304 AGACTTTTTACCATACCCCCTAGG 59.275 45.833 0.06 0.06 43.78 3.02
7189 12460 5.427481 TGAGACTTTTTACCATACCCCCTAG 59.573 44.000 0.00 0.00 0.00 3.02
7192 12463 4.579647 TGAGACTTTTTACCATACCCCC 57.420 45.455 0.00 0.00 0.00 5.40
7208 12480 8.638685 ACATTTGCATGCTTTTATTATGAGAC 57.361 30.769 20.33 0.00 33.05 3.36
7261 12533 0.537188 ATGTACAACCTCAGCCCTCG 59.463 55.000 0.00 0.00 0.00 4.63
7282 12554 6.072728 TGTTCATCGTCTAGGAAATGTTTTGG 60.073 38.462 0.00 0.00 27.90 3.28


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.