Multiple sequence alignment - TraesCS6B01G016100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G016100 chr6B 100.000 6959 0 0 1 6959 9792329 9785371 0.000000e+00 12851.0
1 TraesCS6B01G016100 chr6B 90.994 2454 210 8 3974 6422 10054203 10056650 0.000000e+00 3297.0
2 TraesCS6B01G016100 chr6B 91.343 1005 81 3 1001 2004 10052204 10053203 0.000000e+00 1369.0
3 TraesCS6B01G016100 chr6B 100.000 282 0 0 7331 7612 9784999 9784718 8.750000e-144 521.0
4 TraesCS6B01G016100 chr6B 86.538 468 56 6 77 539 9348306 9347841 6.810000e-140 508.0
5 TraesCS6B01G016100 chr6B 84.990 513 29 21 3495 3980 10053681 10054172 1.920000e-130 477.0
6 TraesCS6B01G016100 chr6B 85.652 460 52 10 6511 6957 10724349 10723891 8.940000e-129 472.0
7 TraesCS6B01G016100 chr6B 82.833 466 65 5 2146 2610 10053233 10053684 3.310000e-108 403.0
8 TraesCS6B01G016100 chr6B 95.620 137 6 0 629 765 9338115 9337979 3.580000e-53 220.0
9 TraesCS6B01G016100 chr6B 83.246 191 19 8 7434 7612 10057373 10057562 6.110000e-36 163.0
10 TraesCS6B01G016100 chr6B 90.667 75 7 0 6432 6506 10056721 10056795 4.860000e-17 100.0
11 TraesCS6B01G016100 chrUn 91.549 2260 178 11 3971 6229 305210887 305213134 0.000000e+00 3103.0
12 TraesCS6B01G016100 chrUn 91.549 2260 178 12 3971 6229 320034819 320032572 0.000000e+00 3103.0
13 TraesCS6B01G016100 chrUn 93.152 774 30 13 782 1554 364738206 364738957 0.000000e+00 1114.0
14 TraesCS6B01G016100 chrUn 86.765 1020 82 27 3001 3981 305209856 305210861 0.000000e+00 1086.0
15 TraesCS6B01G016100 chrUn 86.765 1020 82 27 3001 3981 320035850 320034845 0.000000e+00 1086.0
16 TraesCS6B01G016100 chrUn 87.842 658 42 16 128 765 364737468 364738107 0.000000e+00 737.0
17 TraesCS6B01G016100 chrUn 91.333 450 38 1 1556 2004 412517363 412517812 1.400000e-171 614.0
18 TraesCS6B01G016100 chrUn 76.837 1157 213 36 699 1818 345034608 345035746 1.090000e-167 601.0
19 TraesCS6B01G016100 chrUn 90.751 346 26 6 6618 6958 305213700 305214044 2.500000e-124 457.0
20 TraesCS6B01G016100 chrUn 91.262 309 6 4 6227 6518 305213227 305213531 1.190000e-107 401.0
21 TraesCS6B01G016100 chrUn 86.084 309 26 11 699 998 378039050 378039350 4.430000e-82 316.0
22 TraesCS6B01G016100 chrUn 89.759 166 14 3 7447 7612 87343679 87343841 7.740000e-50 209.0
23 TraesCS6B01G016100 chrUn 92.754 138 9 1 6499 6636 305213546 305213682 1.680000e-46 198.0
24 TraesCS6B01G016100 chr6D 86.927 2486 262 20 3979 6435 5367508 5365057 0.000000e+00 2732.0
25 TraesCS6B01G016100 chr6D 86.906 2482 245 33 3979 6429 5063853 5066285 0.000000e+00 2710.0
26 TraesCS6B01G016100 chr6D 87.302 2402 236 34 3979 6356 5196817 5194461 0.000000e+00 2682.0
27 TraesCS6B01G016100 chr6D 86.538 2481 255 36 3979 6429 5151560 5149129 0.000000e+00 2658.0
28 TraesCS6B01G016100 chr6D 86.463 2231 246 28 3980 6186 5179445 5177247 0.000000e+00 2396.0
29 TraesCS6B01G016100 chr6D 81.677 1861 260 53 2 1824 5057987 5059804 0.000000e+00 1472.0
30 TraesCS6B01G016100 chr6D 93.724 972 60 1 1006 1977 5372345 5371375 0.000000e+00 1456.0
31 TraesCS6B01G016100 chr6D 93.658 946 59 1 3977 4921 5369663 5368718 0.000000e+00 1413.0
32 TraesCS6B01G016100 chr6D 91.077 919 65 5 818 1736 5436682 5435781 0.000000e+00 1227.0
33 TraesCS6B01G016100 chr6D 87.602 976 95 12 2840 3794 5370636 5369666 0.000000e+00 1109.0
34 TraesCS6B01G016100 chr6D 90.453 838 77 2 1006 1840 5153284 5152447 0.000000e+00 1101.0
35 TraesCS6B01G016100 chr6D 89.205 843 88 2 1001 1840 5198817 5197975 0.000000e+00 1050.0
36 TraesCS6B01G016100 chr6D 82.382 823 141 4 1001 1821 5078946 5079766 0.000000e+00 713.0
37 TraesCS6B01G016100 chr6D 81.877 767 101 24 14 765 5437789 5437046 5.050000e-171 612.0
38 TraesCS6B01G016100 chr6D 84.298 605 75 14 1249 1838 5774887 5774288 2.380000e-159 573.0
39 TraesCS6B01G016100 chr6D 90.719 431 36 4 6499 6926 5194219 5193790 8.570000e-159 571.0
40 TraesCS6B01G016100 chr6D 80.439 547 71 21 6445 6958 5364996 5364453 1.200000e-102 385.0
41 TraesCS6B01G016100 chr6D 86.197 355 38 9 6565 6914 5137739 5137391 2.590000e-99 374.0
42 TraesCS6B01G016100 chr6D 85.635 362 43 6 6580 6933 5066613 5066973 9.330000e-99 372.0
43 TraesCS6B01G016100 chr6D 80.977 389 49 11 2987 3353 17237372 17236987 1.250000e-72 285.0
44 TraesCS6B01G016100 chr6D 89.604 202 15 4 7414 7612 5364184 5363986 1.270000e-62 252.0
45 TraesCS6B01G016100 chr6D 87.500 192 16 4 7428 7612 5136986 5136796 1.660000e-51 215.0
46 TraesCS6B01G016100 chr6D 87.245 196 13 5 7428 7612 5193388 5193194 5.980000e-51 213.0
47 TraesCS6B01G016100 chr6D 87.047 193 13 5 7428 7609 5067359 5067550 2.780000e-49 207.0
48 TraesCS6B01G016100 chr6D 86.885 122 14 1 644 765 5436882 5436763 1.330000e-27 135.0
49 TraesCS6B01G016100 chr6D 100.000 35 0 0 6473 6507 5194264 5194230 1.770000e-06 65.8
50 TraesCS6B01G016100 chr6A 86.104 2454 268 35 3979 6403 4770892 4768483 0.000000e+00 2575.0
51 TraesCS6B01G016100 chr6A 87.055 2217 248 16 3979 6181 4181468 4183659 0.000000e+00 2468.0
52 TraesCS6B01G016100 chr6A 86.970 2218 248 18 3979 6181 4207148 4209339 0.000000e+00 2457.0
53 TraesCS6B01G016100 chr6A 80.297 1614 264 40 236 1822 4774227 4772641 0.000000e+00 1170.0
54 TraesCS6B01G016100 chr6A 80.141 1279 221 26 561 1822 4597948 4596686 0.000000e+00 924.0
55 TraesCS6B01G016100 chr6A 90.099 505 40 8 14 512 4598450 4597950 0.000000e+00 647.0
56 TraesCS6B01G016100 chr6A 77.116 1158 208 36 699 1818 4226960 4228098 1.090000e-172 617.0
57 TraesCS6B01G016100 chr6A 77.029 1158 209 36 699 1818 4151582 4152720 5.050000e-171 612.0
58 TraesCS6B01G016100 chr6A 77.029 1158 209 36 699 1818 4176476 4177614 5.050000e-171 612.0
59 TraesCS6B01G016100 chr6A 76.857 1158 211 36 699 1818 4201716 4202854 1.090000e-167 601.0
60 TraesCS6B01G016100 chr6A 87.866 478 41 13 47 512 4614930 4614458 5.190000e-151 545.0
61 TraesCS6B01G016100 chr6A 92.722 371 25 2 6537 6905 4768336 4767966 1.120000e-147 534.0
62 TraesCS6B01G016100 chr6A 87.568 185 18 4 7428 7609 4184894 4185076 7.740000e-50 209.0
63 TraesCS6B01G016100 chr6A 88.235 153 16 2 6508 6658 4183997 4184149 1.690000e-41 182.0
64 TraesCS6B01G016100 chr6A 88.235 153 16 2 6508 6658 4209695 4209847 1.690000e-41 182.0
65 TraesCS6B01G016100 chr6A 88.652 141 12 3 7471 7609 4160110 4160248 1.310000e-37 169.0
66 TraesCS6B01G016100 chr2B 78.468 1802 336 33 3980 5756 154914043 154915817 0.000000e+00 1131.0
67 TraesCS6B01G016100 chr5D 81.184 1233 197 22 2147 3351 72904054 72905279 0.000000e+00 959.0
68 TraesCS6B01G016100 chr5D 82.847 274 24 13 3099 3350 277723844 277724116 2.760000e-54 224.0
69 TraesCS6B01G016100 chr7B 84.754 833 118 5 2471 3296 580663328 580662498 0.000000e+00 826.0
70 TraesCS6B01G016100 chr7A 80.259 1079 199 11 2226 3296 10426073 10425001 0.000000e+00 800.0
71 TraesCS6B01G016100 chr7D 83.794 833 124 8 2471 3295 621300964 621300135 0.000000e+00 780.0
72 TraesCS6B01G016100 chr1D 83.433 839 130 7 2465 3296 484432326 484433162 0.000000e+00 771.0
73 TraesCS6B01G016100 chr1D 83.114 835 125 10 2471 3296 120020535 120019708 0.000000e+00 747.0
74 TraesCS6B01G016100 chr1D 82.075 212 20 4 3173 3368 35867453 35867244 1.700000e-36 165.0
75 TraesCS6B01G016100 chr1B 83.472 841 125 8 2465 3296 328644131 328644966 0.000000e+00 771.0
76 TraesCS6B01G016100 chr1B 87.701 187 18 5 7428 7612 21477426 21477609 5.980000e-51 213.0
77 TraesCS6B01G016100 chr1B 91.228 57 3 2 2039 2094 48063758 48063703 8.190000e-10 76.8
78 TraesCS6B01G016100 chr2D 82.412 904 131 14 2471 3350 551153962 551154861 0.000000e+00 763.0
79 TraesCS6B01G016100 chr2D 98.113 53 1 0 3298 3350 516850562 516850510 8.130000e-15 93.5
80 TraesCS6B01G016100 chr3D 83.784 370 34 17 3015 3361 36157151 36157517 2.050000e-85 327.0
81 TraesCS6B01G016100 chr2A 75.990 404 65 20 2989 3366 297246952 297246555 6.070000e-41 180.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G016100 chr6B 9784718 9792329 7611 True 6686.000000 12851 100.000000 1 7612 2 chr6B.!!$R4 7611
1 TraesCS6B01G016100 chr6B 10052204 10057562 5358 False 968.166667 3297 87.345500 1001 7612 6 chr6B.!!$F1 6611
2 TraesCS6B01G016100 chrUn 320032572 320035850 3278 True 2094.500000 3103 89.157000 3001 6229 2 chrUn.!!$R1 3228
3 TraesCS6B01G016100 chrUn 305209856 305214044 4188 False 1049.000000 3103 90.616200 3001 6958 5 chrUn.!!$F5 3957
4 TraesCS6B01G016100 chrUn 364737468 364738957 1489 False 925.500000 1114 90.497000 128 1554 2 chrUn.!!$F6 1426
5 TraesCS6B01G016100 chrUn 345034608 345035746 1138 False 601.000000 601 76.837000 699 1818 1 chrUn.!!$F2 1119
6 TraesCS6B01G016100 chr6D 5177247 5179445 2198 True 2396.000000 2396 86.463000 3980 6186 1 chr6D.!!$R1 2206
7 TraesCS6B01G016100 chr6D 5149129 5153284 4155 True 1879.500000 2658 88.495500 1006 6429 2 chr6D.!!$R5 5423
8 TraesCS6B01G016100 chr6D 5057987 5059804 1817 False 1472.000000 1472 81.677000 2 1824 1 chr6D.!!$F1 1822
9 TraesCS6B01G016100 chr6D 5363986 5372345 8359 True 1224.500000 2732 88.659000 1006 7612 6 chr6D.!!$R7 6606
10 TraesCS6B01G016100 chr6D 5063853 5067550 3697 False 1096.333333 2710 86.529333 3979 7609 3 chr6D.!!$F3 3630
11 TraesCS6B01G016100 chr6D 5193194 5198817 5623 True 916.360000 2682 90.894200 1001 7612 5 chr6D.!!$R6 6611
12 TraesCS6B01G016100 chr6D 5078946 5079766 820 False 713.000000 713 82.382000 1001 1821 1 chr6D.!!$F2 820
13 TraesCS6B01G016100 chr6D 5435781 5437789 2008 True 658.000000 1227 86.613000 14 1736 3 chr6D.!!$R8 1722
14 TraesCS6B01G016100 chr6D 5774288 5774887 599 True 573.000000 573 84.298000 1249 1838 1 chr6D.!!$R2 589
15 TraesCS6B01G016100 chr6D 5136796 5137739 943 True 294.500000 374 86.848500 6565 7612 2 chr6D.!!$R4 1047
16 TraesCS6B01G016100 chr6A 4767966 4774227 6261 True 1426.333333 2575 86.374333 236 6905 3 chr6A.!!$R3 6669
17 TraesCS6B01G016100 chr6A 4207148 4209847 2699 False 1319.500000 2457 87.602500 3979 6658 2 chr6A.!!$F6 2679
18 TraesCS6B01G016100 chr6A 4176476 4185076 8600 False 867.750000 2468 84.971750 699 7609 4 chr6A.!!$F5 6910
19 TraesCS6B01G016100 chr6A 4596686 4598450 1764 True 785.500000 924 85.120000 14 1822 2 chr6A.!!$R2 1808
20 TraesCS6B01G016100 chr6A 4226960 4228098 1138 False 617.000000 617 77.116000 699 1818 1 chr6A.!!$F4 1119
21 TraesCS6B01G016100 chr6A 4151582 4152720 1138 False 612.000000 612 77.029000 699 1818 1 chr6A.!!$F1 1119
22 TraesCS6B01G016100 chr6A 4201716 4202854 1138 False 601.000000 601 76.857000 699 1818 1 chr6A.!!$F3 1119
23 TraesCS6B01G016100 chr2B 154914043 154915817 1774 False 1131.000000 1131 78.468000 3980 5756 1 chr2B.!!$F1 1776
24 TraesCS6B01G016100 chr5D 72904054 72905279 1225 False 959.000000 959 81.184000 2147 3351 1 chr5D.!!$F1 1204
25 TraesCS6B01G016100 chr7B 580662498 580663328 830 True 826.000000 826 84.754000 2471 3296 1 chr7B.!!$R1 825
26 TraesCS6B01G016100 chr7A 10425001 10426073 1072 True 800.000000 800 80.259000 2226 3296 1 chr7A.!!$R1 1070
27 TraesCS6B01G016100 chr7D 621300135 621300964 829 True 780.000000 780 83.794000 2471 3295 1 chr7D.!!$R1 824
28 TraesCS6B01G016100 chr1D 484432326 484433162 836 False 771.000000 771 83.433000 2465 3296 1 chr1D.!!$F1 831
29 TraesCS6B01G016100 chr1D 120019708 120020535 827 True 747.000000 747 83.114000 2471 3296 1 chr1D.!!$R2 825
30 TraesCS6B01G016100 chr1B 328644131 328644966 835 False 771.000000 771 83.472000 2465 3296 1 chr1B.!!$F2 831
31 TraesCS6B01G016100 chr2D 551153962 551154861 899 False 763.000000 763 82.412000 2471 3350 1 chr2D.!!$F1 879

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
277 306 0.246635 GAAAGCACAGCCTCGGTAGA 59.753 55.000 0.00 0.0 0.00 2.59 F
2055 2807 0.320073 TAAAGTGGTCGGACCTTGCG 60.320 55.000 26.41 0.0 39.58 4.85 F
2344 3113 0.105039 GGGAGGCTACTTGGTCATCG 59.895 60.000 0.00 0.0 0.00 3.84 F
3104 3884 0.179048 TCGATGATGATGGCGGCTTT 60.179 50.000 11.43 0.0 0.00 3.51 F
3255 4043 0.953960 GTGTAAGTGGTGGCTTCGGG 60.954 60.000 0.00 0.0 0.00 5.14 F
3332 4136 1.075305 GAGGCCGGGGGTTTTAACA 59.925 57.895 2.18 0.0 0.00 2.41 F
4295 9801 1.308998 GCGGTGTGCCATTAGCTATT 58.691 50.000 0.00 0.0 44.23 1.73 F
5240 12926 0.178990 AGGTGGGGAAGCTGACAAAC 60.179 55.000 0.00 0.0 34.56 2.93 F
5292 12978 0.835543 AGAGGAGTCTGCAGGCAAGT 60.836 55.000 22.50 3.2 0.00 3.16 F
5706 13392 1.154150 GCACTGCCGATGCTTGAAC 60.154 57.895 0.00 0.0 40.08 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2245 3013 0.248215 CGTGCCGCAATCCAATCTTC 60.248 55.000 0.00 0.0 0.00 2.87 R
2989 3769 0.682852 CCAACGACACCACTTCCCTA 59.317 55.000 0.00 0.0 0.00 3.53 R
3577 4388 0.904649 CAGCTCCCTGGTACACATGA 59.095 55.000 0.00 0.0 35.38 3.07 R
4617 10163 0.998928 TGGCCACCCACATAATCACT 59.001 50.000 0.00 0.0 35.79 3.41 R
4624 10170 1.533753 CCACTTTGGCCACCCACAT 60.534 57.895 3.88 0.0 41.97 3.21 R
4628 10174 1.744320 GACAACCACTTTGGCCACCC 61.744 60.000 3.88 0.0 42.67 4.61 R
5957 13643 1.192428 AACCACGTAGGATCCACTCC 58.808 55.000 15.82 0.0 45.33 3.85 R
6158 13853 1.748244 CGTACCTCATCCTGGTCGGTA 60.748 57.143 0.00 0.0 38.88 4.02 R
6443 14421 1.903877 CTCCTCGTCCCCACTGCAAT 61.904 60.000 0.00 0.0 0.00 3.56 R
7509 15816 0.189822 CCACCCTCCCCCAAAAAGAA 59.810 55.000 0.00 0.0 0.00 2.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 45 1.391933 ATAGTCAGTGGCGCGATGGA 61.392 55.000 12.10 0.00 0.00 3.41
70 71 4.987832 AGCACACAGAATAGTAGAGAACG 58.012 43.478 0.00 0.00 0.00 3.95
79 80 4.655762 ATAGTAGAGAACGCAATGCTCA 57.344 40.909 2.94 0.00 0.00 4.26
277 306 0.246635 GAAAGCACAGCCTCGGTAGA 59.753 55.000 0.00 0.00 0.00 2.59
332 362 8.801715 ACTTTGATATTGTAGTTTTGCACAAG 57.198 30.769 0.00 0.00 38.01 3.16
334 364 9.248291 CTTTGATATTGTAGTTTTGCACAAGTT 57.752 29.630 0.00 0.00 38.01 2.66
340 370 6.371809 TGTAGTTTTGCACAAGTTTAGAGG 57.628 37.500 0.00 0.00 0.00 3.69
421 456 5.279255 TGGTAGCAAGTAACAACACTGTA 57.721 39.130 0.00 0.00 33.45 2.74
449 491 6.363065 AGTGCTCCAATGAGTTCAATCATAT 58.637 36.000 0.00 0.00 39.00 1.78
451 493 8.162085 AGTGCTCCAATGAGTTCAATCATATAT 58.838 33.333 0.00 0.00 39.00 0.86
475 517 2.684881 AGAGTAATCCAAATTGCCGCTG 59.315 45.455 0.00 0.00 0.00 5.18
502 552 8.862325 ATGGATATACACTTCAGTTTTGAACA 57.138 30.769 0.00 0.00 38.37 3.18
530 580 3.916359 AACCCAAACCGGTTTTGATTT 57.084 38.095 29.74 18.29 46.76 2.17
535 585 3.322541 CCAAACCGGTTTTGATTTACCCT 59.677 43.478 29.74 1.39 46.76 4.34
559 617 4.036852 GGTGGGCATATCTTTGAAGCTAAC 59.963 45.833 0.00 0.00 0.00 2.34
642 705 1.006832 AGTGCGCACTAATTAAGCCG 58.993 50.000 40.15 0.49 40.43 5.52
692 755 4.152625 GCTTGGCACGTGCTAGCG 62.153 66.667 34.69 26.62 41.70 4.26
762 848 2.136728 TGCGCGCAACTAGTAAGAAAA 58.863 42.857 34.66 1.69 0.00 2.29
764 850 2.157085 GCGCGCAACTAGTAAGAAAACT 59.843 45.455 29.10 0.00 0.00 2.66
773 859 8.880750 GCAACTAGTAAGAAAACTATTAGGTGG 58.119 37.037 0.00 0.00 30.74 4.61
779 865 9.043548 AGTAAGAAAACTATTAGGTGGAGCTTA 57.956 33.333 0.00 0.00 0.00 3.09
810 955 1.476891 GCGTCCTTATCACTCCAGTCA 59.523 52.381 0.00 0.00 0.00 3.41
844 1254 6.166984 TCAGATCCAATCAAACTAGCTAGG 57.833 41.667 24.35 7.39 0.00 3.02
859 1269 9.737844 AAACTAGCTAGGTAGTAGTCCATATAC 57.262 37.037 29.65 0.00 32.69 1.47
860 1270 8.446714 ACTAGCTAGGTAGTAGTCCATATACA 57.553 38.462 28.69 0.00 31.14 2.29
932 1342 5.862678 AAGGAGATAGTAGAAACTGAGGC 57.137 43.478 0.00 0.00 36.36 4.70
1478 1892 1.300971 CCACGTCTCTTGGCCATGTG 61.301 60.000 17.54 15.23 0.00 3.21
1710 2149 4.878397 AGTCCAGACACAAAGAAAGTTCTG 59.122 41.667 0.00 0.00 37.65 3.02
1717 2156 4.823989 ACACAAAGAAAGTTCTGAGGGATG 59.176 41.667 0.00 0.00 37.65 3.51
1736 2175 4.566488 GGATGTCCTCCTTCAACTTGACAT 60.566 45.833 0.00 0.00 43.85 3.06
1782 2221 3.801307 ATGGATGAATGGCAGCTGATA 57.199 42.857 20.43 5.19 32.29 2.15
1855 2335 2.703416 CTAGTGTCCTGCATGCTTTGA 58.297 47.619 20.33 9.66 0.00 2.69
1971 2452 3.430218 CGACTTTAGGCTTTGTCAGACAG 59.570 47.826 2.82 0.00 29.16 3.51
1980 2461 5.045286 AGGCTTTGTCAGACAGATAAGGAAT 60.045 40.000 13.19 0.00 29.16 3.01
1981 2462 6.156949 AGGCTTTGTCAGACAGATAAGGAATA 59.843 38.462 13.19 0.00 29.16 1.75
1982 2463 6.995091 GGCTTTGTCAGACAGATAAGGAATAT 59.005 38.462 13.19 0.00 0.00 1.28
1983 2464 8.150945 GGCTTTGTCAGACAGATAAGGAATATA 58.849 37.037 13.19 0.00 0.00 0.86
2042 2794 9.709495 TTTCCTTTGATTCATCCAATTAAAGTG 57.291 29.630 9.46 3.84 42.56 3.16
2043 2795 7.839907 TCCTTTGATTCATCCAATTAAAGTGG 58.160 34.615 9.46 2.73 42.56 4.00
2044 2796 7.454380 TCCTTTGATTCATCCAATTAAAGTGGT 59.546 33.333 8.08 0.00 42.56 4.16
2045 2797 7.761249 CCTTTGATTCATCCAATTAAAGTGGTC 59.239 37.037 8.08 0.68 42.56 4.02
2046 2798 6.435430 TGATTCATCCAATTAAAGTGGTCG 57.565 37.500 8.08 2.50 37.43 4.79
2050 2802 3.062122 TCCAATTAAAGTGGTCGGACC 57.938 47.619 20.36 20.36 39.22 4.46
2051 2803 2.640826 TCCAATTAAAGTGGTCGGACCT 59.359 45.455 26.41 10.07 39.58 3.85
2053 2805 3.190535 CCAATTAAAGTGGTCGGACCTTG 59.809 47.826 26.41 19.06 39.58 3.61
2054 2806 1.886886 TTAAAGTGGTCGGACCTTGC 58.113 50.000 26.41 16.46 39.58 4.01
2055 2807 0.320073 TAAAGTGGTCGGACCTTGCG 60.320 55.000 26.41 0.00 39.58 4.85
2058 2810 4.243008 TGGTCGGACCTTGCGCAA 62.243 61.111 26.41 23.48 39.58 4.85
2079 2831 2.820037 GGAGCTACTTGCACCGGC 60.820 66.667 0.00 0.00 42.21 6.13
2080 2832 3.188786 GAGCTACTTGCACCGGCG 61.189 66.667 0.00 0.00 45.94 6.46
2081 2833 4.760047 AGCTACTTGCACCGGCGG 62.760 66.667 27.06 27.06 45.94 6.13
2110 2862 5.514500 TTTTTATCCTCCCAACACTAGCT 57.486 39.130 0.00 0.00 0.00 3.32
2114 2866 1.679311 CTCCCAACACTAGCTGCCA 59.321 57.895 0.00 0.00 0.00 4.92
2125 2877 2.765807 GCTGCCAGAGCCCTCCTA 60.766 66.667 0.00 0.00 42.54 2.94
2129 2881 1.152139 GCCAGAGCCCTCCTATCCT 60.152 63.158 0.00 0.00 0.00 3.24
2135 2887 1.229368 GCCCTCCTATCCTCCCTCC 60.229 68.421 0.00 0.00 0.00 4.30
2136 2888 2.037304 GCCCTCCTATCCTCCCTCCA 62.037 65.000 0.00 0.00 0.00 3.86
2209 2977 4.415150 CCCCTGCTCGCATGTGGT 62.415 66.667 6.39 0.00 0.00 4.16
2219 2987 2.281414 CATGTGGTGTGGTGCGGA 60.281 61.111 0.00 0.00 0.00 5.54
2239 3007 0.615331 ATCTTGATGCGAGTGGTGGT 59.385 50.000 0.00 0.00 0.00 4.16
2243 3011 2.352422 ATGCGAGTGGTGGTGCAT 59.648 55.556 0.00 0.00 42.84 3.96
2245 3013 3.490759 GCGAGTGGTGGTGCATCG 61.491 66.667 0.00 0.00 36.51 3.84
2256 3024 2.684881 GTGGTGCATCGAAGATTGGATT 59.315 45.455 0.00 0.00 45.12 3.01
2300 3068 2.203640 ATCGGATCTAGGGCGGCA 60.204 61.111 12.47 0.00 0.00 5.69
2302 3070 2.715181 ATCGGATCTAGGGCGGCAGA 62.715 60.000 12.47 6.37 0.00 4.26
2303 3071 2.279069 CGGATCTAGGGCGGCAGAT 61.279 63.158 12.47 11.65 34.19 2.90
2313 3081 2.817424 CGGCAGATGCAGGCTCTA 59.183 61.111 7.19 0.00 44.36 2.43
2341 3110 0.984230 CTTGGGAGGCTACTTGGTCA 59.016 55.000 0.00 0.00 0.00 4.02
2344 3113 0.105039 GGGAGGCTACTTGGTCATCG 59.895 60.000 0.00 0.00 0.00 3.84
2357 3126 4.856801 CATCGGGTCCGGCTTGGG 62.857 72.222 9.68 0.00 40.25 4.12
2413 3184 3.379865 GAGGGCCGGTTGTATGCGA 62.380 63.158 1.90 0.00 0.00 5.10
2459 3230 2.368548 CCAGTGTGCCCTGCTATATACA 59.631 50.000 0.00 0.00 0.00 2.29
2547 3319 3.745799 GAGATCAGTCATCTAGTCCCGA 58.254 50.000 0.00 0.00 42.48 5.14
2574 3346 1.004277 GTTGGGGAGACATAGTTGCCA 59.996 52.381 0.00 0.00 0.00 4.92
2616 3391 2.548707 GGATGATGGCTGCATTCTACGA 60.549 50.000 0.50 0.00 0.00 3.43
2645 3420 0.647410 GATGAAGGCATCGTCGTGTG 59.353 55.000 0.00 0.00 41.31 3.82
2758 3535 0.392461 TAGGGAGCATCGTTTGTGGC 60.392 55.000 0.00 0.00 34.37 5.01
2765 3542 1.602668 GCATCGTTTGTGGCACAACAT 60.603 47.619 31.20 19.90 44.16 2.71
2776 3553 1.000274 GGCACAACATTGGAAGACACC 60.000 52.381 0.00 0.00 0.00 4.16
2779 3556 1.133915 ACAACATTGGAAGACACCGGT 60.134 47.619 0.00 0.00 0.00 5.28
2806 3583 1.099879 GGAGCGGCTTCATCTTGCAT 61.100 55.000 2.97 0.00 0.00 3.96
2820 3597 2.825836 GCATGGAGCTTCGGTGGG 60.826 66.667 0.00 0.00 41.15 4.61
2821 3598 2.989639 CATGGAGCTTCGGTGGGA 59.010 61.111 0.00 0.00 0.00 4.37
2932 3712 1.694844 TGTCGACTGGTGGTACTTGA 58.305 50.000 17.92 0.00 0.00 3.02
2940 3720 1.689813 TGGTGGTACTTGACGACATGT 59.310 47.619 0.00 0.00 38.46 3.21
2944 3724 1.463444 GGTACTTGACGACATGTTGCC 59.537 52.381 13.30 2.29 36.20 4.52
2989 3769 1.146041 TGCTCAGGAGTTTGCGTGT 59.854 52.632 0.00 0.00 0.00 4.49
2995 3775 1.053424 AGGAGTTTGCGTGTAGGGAA 58.947 50.000 0.00 0.00 0.00 3.97
3009 3789 1.147600 GGGAAGTGGTGTCGTTGGT 59.852 57.895 0.00 0.00 0.00 3.67
3054 3834 0.396435 TGGACTCGCAAGGATGTTGT 59.604 50.000 0.00 0.00 38.47 3.32
3078 3858 4.080072 GGATCTCTTTCCTGAAGATGGGTT 60.080 45.833 0.00 0.00 43.23 4.11
3082 3862 3.846588 TCTTTCCTGAAGATGGGTTAGCT 59.153 43.478 0.00 0.00 39.44 3.32
3104 3884 0.179048 TCGATGATGATGGCGGCTTT 60.179 50.000 11.43 0.00 0.00 3.51
3113 3893 2.812591 TGATGGCGGCTTTTAAAACGTA 59.187 40.909 11.43 3.78 0.00 3.57
3143 3923 2.546789 GTGTACGCTTTAGGTTTGCTGT 59.453 45.455 0.00 0.00 0.00 4.40
3168 3948 3.865745 CAGCTGTAGGTTTCGATACCTTG 59.134 47.826 28.96 18.17 46.39 3.61
3187 3972 1.068250 TGTGATCGGCGACAACACA 59.932 52.632 28.64 28.64 38.78 3.72
3200 3985 5.813672 GGCGACAACACAGGTTTTAGATATA 59.186 40.000 0.00 0.00 34.21 0.86
3255 4043 0.953960 GTGTAAGTGGTGGCTTCGGG 60.954 60.000 0.00 0.00 0.00 5.14
3332 4136 1.075305 GAGGCCGGGGGTTTTAACA 59.925 57.895 2.18 0.00 0.00 2.41
3399 4210 9.445786 ACATATGTTGTTAGTTTTTCTTTCACG 57.554 29.630 1.41 0.00 33.74 4.35
3442 4253 8.064222 CAGTTTATATTATTCAACGAGCACAGG 58.936 37.037 0.00 0.00 0.00 4.00
3476 4287 6.954487 AAAGTCTGAACGGTTAAAAGGAAT 57.046 33.333 0.00 0.00 0.00 3.01
3484 4295 6.875195 TGAACGGTTAAAAGGAATACACCTAG 59.125 38.462 0.00 0.00 39.62 3.02
3577 4388 4.454161 TGCACGTAAACACAATCAGCTAAT 59.546 37.500 0.00 0.00 0.00 1.73
3653 7863 8.934023 ATAATTTCTTCTGAGTGTTTGGGTAA 57.066 30.769 0.00 0.00 0.00 2.85
3682 7892 4.684485 GCATACCAGCAAGACCAGTAGAAT 60.684 45.833 0.00 0.00 0.00 2.40
3719 7930 7.553881 TCTATTCTTTTGCTAAAATCCGAGG 57.446 36.000 0.00 0.00 0.00 4.63
3724 7935 8.795842 TTCTTTTGCTAAAATCCGAGGTTATA 57.204 30.769 0.00 0.00 0.00 0.98
3759 8001 8.700973 AGTAAATTACATGGACTTTGGTTTTGT 58.299 29.630 5.89 0.00 0.00 2.83
3761 8003 3.177997 ACATGGACTTTGGTTTTGTGC 57.822 42.857 0.00 0.00 0.00 4.57
3765 8007 2.955660 TGGACTTTGGTTTTGTGCCTAG 59.044 45.455 0.00 0.00 0.00 3.02
3809 8052 6.979817 TCTGCAATATAACCATGTGAAAATGC 59.020 34.615 0.00 0.00 0.00 3.56
3810 8053 6.047870 TGCAATATAACCATGTGAAAATGCC 58.952 36.000 0.00 0.00 0.00 4.40
3824 9276 7.669427 TGTGAAAATGCCAATTAAAGACTCAT 58.331 30.769 0.00 0.00 0.00 2.90
3835 9287 9.421806 CCAATTAAAGACTCATGTATGCAAAAA 57.578 29.630 0.00 0.00 0.00 1.94
4014 9520 4.037222 TGCCTCTCATGGAAATAGGTACA 58.963 43.478 0.00 0.00 0.00 2.90
4161 9667 5.097742 TGGTGGTATCTACAACATGGAAG 57.902 43.478 0.00 0.00 31.63 3.46
4162 9668 4.780554 TGGTGGTATCTACAACATGGAAGA 59.219 41.667 0.00 0.00 31.63 2.87
4225 9731 3.137544 ACATGTGGTGGTGAAGGACTAAA 59.862 43.478 0.00 0.00 0.00 1.85
4295 9801 1.308998 GCGGTGTGCCATTAGCTATT 58.691 50.000 0.00 0.00 44.23 1.73
4451 9957 2.097629 TCTACCTTCGCATCTGAAGACG 59.902 50.000 5.12 0.00 46.64 4.18
4571 10102 6.270064 GTCATTTCAGTTAGGAGAGAGCTAC 58.730 44.000 0.00 0.00 0.00 3.58
4617 10163 4.100035 GCATGATCCGGTGGATAGATGATA 59.900 45.833 16.18 0.00 43.27 2.15
4618 10164 5.738495 GCATGATCCGGTGGATAGATGATAG 60.738 48.000 16.18 0.00 43.27 2.08
4619 10165 4.935578 TGATCCGGTGGATAGATGATAGT 58.064 43.478 0.00 0.00 43.27 2.12
4624 10170 6.490492 TCCGGTGGATAGATGATAGTGATTA 58.510 40.000 0.00 0.00 0.00 1.75
4625 10171 7.126061 TCCGGTGGATAGATGATAGTGATTAT 58.874 38.462 0.00 0.00 0.00 1.28
4627 10173 7.147828 CCGGTGGATAGATGATAGTGATTATGT 60.148 40.741 0.00 0.00 0.00 2.29
4628 10174 7.704047 CGGTGGATAGATGATAGTGATTATGTG 59.296 40.741 0.00 0.00 0.00 3.21
4922 12608 4.865365 GTGCTAGTTATTGAGGACTGTGTC 59.135 45.833 0.00 0.00 31.82 3.67
5127 12813 1.001641 AGGTGCTTGTGGGCTGATC 60.002 57.895 0.00 0.00 0.00 2.92
5164 12850 3.803340 AGGGTGAGATAGGGAAACTGAA 58.197 45.455 0.00 0.00 0.00 3.02
5167 12853 5.970640 AGGGTGAGATAGGGAAACTGAAATA 59.029 40.000 0.00 0.00 0.00 1.40
5219 12905 1.308998 AGTGCCCAAACTTCTTCACG 58.691 50.000 0.00 0.00 0.00 4.35
5240 12926 0.178990 AGGTGGGGAAGCTGACAAAC 60.179 55.000 0.00 0.00 34.56 2.93
5249 12935 4.506095 GGGAAGCTGACAAACTTAAGGGTA 60.506 45.833 7.53 0.00 0.00 3.69
5292 12978 0.835543 AGAGGAGTCTGCAGGCAAGT 60.836 55.000 22.50 3.20 0.00 3.16
5316 13002 6.358577 CTCTGATGGAGTCTCTGTGCAACA 62.359 50.000 0.00 0.00 40.11 3.33
5359 13045 3.469739 TGATTGTGGATGATGATCGTGG 58.530 45.455 0.00 0.00 0.00 4.94
5402 13088 5.352569 CGTCAATCATAGCTTGGAAGACTTT 59.647 40.000 0.00 0.00 0.00 2.66
5420 13106 2.065899 TTGCACCCTGTACAAAGCTT 57.934 45.000 0.00 0.00 0.00 3.74
5422 13108 2.383855 TGCACCCTGTACAAAGCTTTT 58.616 42.857 9.53 4.13 0.00 2.27
5477 13163 2.960384 GGTGCCATCATGGATCAATCAA 59.040 45.455 8.30 0.00 40.96 2.57
5590 13276 4.487019 CTCGTCCTTTTTCTCTGGAGTAC 58.513 47.826 0.00 0.00 0.00 2.73
5597 13283 5.395768 CCTTTTTCTCTGGAGTACGGATGAT 60.396 44.000 0.00 0.00 33.01 2.45
5600 13286 6.978674 TTTCTCTGGAGTACGGATGATAAT 57.021 37.500 0.00 0.00 33.01 1.28
5629 13315 6.720112 ATCATATACTTTTGGCAGCAATGT 57.280 33.333 0.00 0.00 0.00 2.71
5667 13353 4.610605 TGGTTGTGGACGAAGAAGATAA 57.389 40.909 0.00 0.00 0.00 1.75
5691 13377 1.294659 CGCTGTTGGAGAAGGAGCAC 61.295 60.000 0.00 0.00 0.00 4.40
5706 13392 1.154150 GCACTGCCGATGCTTGAAC 60.154 57.895 0.00 0.00 40.08 3.18
5709 13395 2.667874 TGCCGATGCTTGAACGCA 60.668 55.556 0.00 0.00 45.10 5.24
5797 13483 3.019564 GCCCTTTGCTGAAGTATGTCAT 58.980 45.455 0.00 0.00 36.87 3.06
5957 13643 8.174733 AGGCAGGTAAATTCATTGATAATCTG 57.825 34.615 0.00 0.00 0.00 2.90
6064 13750 8.684386 ATTAGATCACTCGAGAGAAGATTACA 57.316 34.615 21.68 0.00 41.32 2.41
6158 13853 1.491754 TGGCTACATGATCATGCAGGT 59.508 47.619 31.17 16.84 42.39 4.00
6456 14434 1.187567 AAGCCAATTGCAGTGGGGAC 61.188 55.000 17.57 4.20 44.83 4.46
6704 14967 7.807977 TGGAGATTCCAAATTAGCAGATTAC 57.192 36.000 0.00 0.00 45.00 1.89
6856 15123 2.290641 ACTTATTTCGTCCATGGGTGCA 60.291 45.455 13.02 0.00 0.00 4.57
6864 15131 2.223923 CGTCCATGGGTGCAAAGAAAAA 60.224 45.455 13.02 0.00 0.00 1.94
6906 15173 2.237143 TCCTTCAGCATTAGACTGGGTG 59.763 50.000 0.00 0.00 35.78 4.61
6910 15177 2.766263 TCAGCATTAGACTGGGTGGTAG 59.234 50.000 0.00 0.00 35.78 3.18
6913 15180 3.844211 AGCATTAGACTGGGTGGTAGAAA 59.156 43.478 0.00 0.00 0.00 2.52
6916 15183 5.106277 GCATTAGACTGGGTGGTAGAAAAAC 60.106 44.000 0.00 0.00 0.00 2.43
7363 15669 7.944061 TGTAGCTTATGCCTCGTACTTATTTA 58.056 34.615 0.00 0.00 40.80 1.40
7451 15758 9.865321 TTTTTGTAGCTTATGTCTCGTACTTAT 57.135 29.630 0.00 0.00 0.00 1.73
7452 15759 9.865321 TTTTGTAGCTTATGTCTCGTACTTATT 57.135 29.630 0.00 0.00 0.00 1.40
7453 15760 9.865321 TTTGTAGCTTATGTCTCGTACTTATTT 57.135 29.630 0.00 0.00 0.00 1.40
7484 15791 9.883142 AATACAAAAACCAAGAAAATGTCTTCA 57.117 25.926 0.00 0.00 45.25 3.02
7486 15793 8.424274 ACAAAAACCAAGAAAATGTCTTCATC 57.576 30.769 0.00 0.00 45.25 2.92
7487 15794 7.222611 ACAAAAACCAAGAAAATGTCTTCATCG 59.777 33.333 0.00 0.00 45.25 3.84
7488 15795 6.391227 AAACCAAGAAAATGTCTTCATCGT 57.609 33.333 0.00 0.00 45.25 3.73
7489 15796 6.391227 AACCAAGAAAATGTCTTCATCGTT 57.609 33.333 0.00 0.00 45.25 3.85
7490 15797 6.391227 ACCAAGAAAATGTCTTCATCGTTT 57.609 33.333 0.00 0.00 45.25 3.60
7491 15798 6.805713 ACCAAGAAAATGTCTTCATCGTTTT 58.194 32.000 0.00 0.00 45.25 2.43
7492 15799 7.264947 ACCAAGAAAATGTCTTCATCGTTTTT 58.735 30.769 0.00 0.00 45.25 1.94
7493 15800 8.410141 ACCAAGAAAATGTCTTCATCGTTTTTA 58.590 29.630 0.00 0.00 45.25 1.52
7494 15801 9.243637 CCAAGAAAATGTCTTCATCGTTTTTAA 57.756 29.630 0.00 0.00 45.25 1.52
7497 15804 9.463443 AGAAAATGTCTTCATCGTTTTTAAAGG 57.537 29.630 0.00 0.00 35.18 3.11
7498 15805 9.244799 GAAAATGTCTTCATCGTTTTTAAAGGT 57.755 29.630 0.00 0.00 35.18 3.50
7499 15806 8.574196 AAATGTCTTCATCGTTTTTAAAGGTG 57.426 30.769 0.00 0.00 32.56 4.00
7500 15807 6.687081 TGTCTTCATCGTTTTTAAAGGTGT 57.313 33.333 0.00 0.00 0.00 4.16
7501 15808 6.491394 TGTCTTCATCGTTTTTAAAGGTGTG 58.509 36.000 0.00 0.00 0.00 3.82
7502 15809 6.094325 TGTCTTCATCGTTTTTAAAGGTGTGT 59.906 34.615 0.00 0.00 0.00 3.72
7503 15810 6.413818 GTCTTCATCGTTTTTAAAGGTGTGTG 59.586 38.462 0.00 0.00 0.00 3.82
7504 15811 5.821516 TCATCGTTTTTAAAGGTGTGTGT 57.178 34.783 0.00 0.00 0.00 3.72
7505 15812 6.197364 TCATCGTTTTTAAAGGTGTGTGTT 57.803 33.333 0.00 0.00 0.00 3.32
7506 15813 6.259638 TCATCGTTTTTAAAGGTGTGTGTTC 58.740 36.000 0.00 0.00 0.00 3.18
7507 15814 5.883503 TCGTTTTTAAAGGTGTGTGTTCT 57.116 34.783 0.00 0.00 0.00 3.01
7508 15815 6.256912 TCGTTTTTAAAGGTGTGTGTTCTT 57.743 33.333 0.00 0.00 0.00 2.52
7509 15816 6.679843 TCGTTTTTAAAGGTGTGTGTTCTTT 58.320 32.000 0.00 0.00 35.29 2.52
7510 15817 7.146648 TCGTTTTTAAAGGTGTGTGTTCTTTT 58.853 30.769 0.00 0.00 33.44 2.27
7511 15818 7.326547 TCGTTTTTAAAGGTGTGTGTTCTTTTC 59.673 33.333 0.00 0.00 33.44 2.29
7512 15819 7.327518 CGTTTTTAAAGGTGTGTGTTCTTTTCT 59.672 33.333 0.00 0.00 33.44 2.52
7517 15824 7.420184 AAAGGTGTGTGTTCTTTTCTTTTTG 57.580 32.000 0.00 0.00 0.00 2.44
7518 15825 5.478407 AGGTGTGTGTTCTTTTCTTTTTGG 58.522 37.500 0.00 0.00 0.00 3.28
7548 15855 3.643398 GGGGAACTCCGCCTATGT 58.357 61.111 1.35 0.00 43.94 2.29
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 5.394738 TGACTATTGGACCCTCTATGGTAG 58.605 45.833 0.00 0.00 39.24 3.18
44 45 6.782082 TCTCTACTATTCTGTGTGCTCATT 57.218 37.500 0.00 0.00 0.00 2.57
70 71 2.035066 AGGTGTTGTCTTTGAGCATTGC 59.965 45.455 0.00 0.00 0.00 3.56
79 80 8.697507 ATGATTCTCTTAAAGGTGTTGTCTTT 57.302 30.769 0.00 0.00 38.00 2.52
170 176 5.113446 AGGGAATCTAGTAACAGAGACGA 57.887 43.478 0.00 0.00 0.00 4.20
277 306 1.349357 GGGGCTGTCAGAGAAGAGTTT 59.651 52.381 3.32 0.00 0.00 2.66
340 370 7.248437 AGCGGTAAACTATTTTATGAAACAGC 58.752 34.615 0.00 0.00 29.82 4.40
375 407 1.995376 AGGTACAAAGTTGCCCAAGG 58.005 50.000 0.00 0.00 0.00 3.61
421 456 2.906389 TGAACTCATTGGAGCACTAGGT 59.094 45.455 0.00 0.00 45.42 3.08
449 491 5.932303 GCGGCAATTTGGATTACTCTCTATA 59.068 40.000 0.00 0.00 0.00 1.31
451 493 4.127171 GCGGCAATTTGGATTACTCTCTA 58.873 43.478 0.00 0.00 0.00 2.43
455 497 2.423538 ACAGCGGCAATTTGGATTACTC 59.576 45.455 1.45 0.00 0.00 2.59
456 498 2.446435 ACAGCGGCAATTTGGATTACT 58.554 42.857 1.45 0.00 0.00 2.24
457 499 2.939460 ACAGCGGCAATTTGGATTAC 57.061 45.000 1.45 0.00 0.00 1.89
458 500 3.317711 CCATACAGCGGCAATTTGGATTA 59.682 43.478 1.45 0.00 0.00 1.75
514 564 4.303282 CAGGGTAAATCAAAACCGGTTTG 58.697 43.478 32.23 23.95 46.86 2.93
517 567 2.158430 ACCAGGGTAAATCAAAACCGGT 60.158 45.455 0.00 0.00 36.57 5.28
535 585 2.025037 AGCTTCAAAGATATGCCCACCA 60.025 45.455 0.00 0.00 0.00 4.17
642 705 1.696988 CGCATGGTTTGTTGGTTAGC 58.303 50.000 0.00 0.00 0.00 3.09
692 755 2.040178 AGGAGGACGTGATGGGTAATC 58.960 52.381 0.00 0.00 35.67 1.75
762 848 5.045869 TGCAACTTAAGCTCCACCTAATAGT 60.046 40.000 1.29 0.00 0.00 2.12
764 850 5.429681 TGCAACTTAAGCTCCACCTAATA 57.570 39.130 1.29 0.00 0.00 0.98
773 859 0.452784 CGCGGTTGCAACTTAAGCTC 60.453 55.000 27.64 9.37 42.97 4.09
779 865 0.533308 TAAGGACGCGGTTGCAACTT 60.533 50.000 27.64 15.05 42.97 2.66
810 955 5.319453 TGATTGGATCTGAAGCTTCTTTGT 58.681 37.500 26.09 10.45 0.00 2.83
844 1254 7.749570 CGCTTGTATGTGTATATGGACTACTAC 59.250 40.741 0.00 0.00 0.00 2.73
859 1269 0.454957 GTTGCTGCCGCTTGTATGTG 60.455 55.000 0.70 0.00 36.97 3.21
860 1270 0.888736 TGTTGCTGCCGCTTGTATGT 60.889 50.000 0.70 0.00 36.97 2.29
879 1289 0.251297 TGCTTGCTGGTTGTGGCTAT 60.251 50.000 0.00 0.00 0.00 2.97
908 1318 6.045955 GCCTCAGTTTCTACTATCTCCTTTG 58.954 44.000 0.00 0.00 31.96 2.77
920 1330 6.042093 TCTCTTTTTCTCTGCCTCAGTTTCTA 59.958 38.462 0.00 0.00 32.61 2.10
921 1331 5.041191 TCTTTTTCTCTGCCTCAGTTTCT 57.959 39.130 0.00 0.00 32.61 2.52
922 1332 5.059833 TCTCTTTTTCTCTGCCTCAGTTTC 58.940 41.667 0.00 0.00 32.61 2.78
932 1342 4.381932 GCTCCTCTCCTCTCTTTTTCTCTG 60.382 50.000 0.00 0.00 0.00 3.35
1053 1464 2.900546 CAGGTTGTACTCCTCCTTGAGT 59.099 50.000 7.11 0.00 46.90 3.41
1478 1892 3.077359 ACAAGGTCAGATACTTTGCTGC 58.923 45.455 0.00 0.00 46.33 5.25
1525 1939 4.162509 GCCCTTAGACAACCTCTCTGTTAT 59.837 45.833 0.00 0.00 0.00 1.89
1561 1975 3.879892 GAGACAACCTTGAGCTTTTCACT 59.120 43.478 0.00 0.00 34.94 3.41
1663 2095 1.043673 CCCACCGGAACAAAAACCCA 61.044 55.000 9.46 0.00 0.00 4.51
1717 2156 3.077359 CCATGTCAAGTTGAAGGAGGAC 58.923 50.000 7.25 0.00 0.00 3.85
1726 2165 3.402110 TGTACAGCTCCATGTCAAGTTG 58.598 45.455 0.00 0.00 34.56 3.16
1782 2221 1.202976 AGGAATGTCTGCAGCTGGTTT 60.203 47.619 17.12 0.00 0.00 3.27
1855 2335 6.882610 TTTCACTTAGATGTCAGCACAAAT 57.117 33.333 0.00 0.00 35.64 2.32
1888 2368 2.351350 GCCACTGTATTGTTTTCACCCG 60.351 50.000 0.00 0.00 0.00 5.28
1937 2417 5.109903 AGCCTAAAGTCGCACTGTTATTAG 58.890 41.667 0.00 0.00 0.00 1.73
1943 2423 1.873591 CAAAGCCTAAAGTCGCACTGT 59.126 47.619 0.00 0.00 0.00 3.55
1946 2426 1.871039 TGACAAAGCCTAAAGTCGCAC 59.129 47.619 0.00 0.00 33.83 5.34
2018 2507 7.454380 ACCACTTTAATTGGATGAATCAAAGGA 59.546 33.333 8.36 0.00 37.58 3.36
2032 2521 3.365969 GCAAGGTCCGACCACTTTAATTG 60.366 47.826 19.95 13.39 41.95 2.32
2034 2523 2.433436 GCAAGGTCCGACCACTTTAAT 58.567 47.619 19.95 0.00 41.95 1.40
2036 2525 0.320073 CGCAAGGTCCGACCACTTTA 60.320 55.000 19.95 0.00 41.95 1.85
2037 2789 1.597027 CGCAAGGTCCGACCACTTT 60.597 57.895 19.95 2.53 41.95 2.66
2040 2792 4.980805 TGCGCAAGGTCCGACCAC 62.981 66.667 19.95 7.66 41.95 4.16
2042 2794 3.423154 CTTGCGCAAGGTCCGACC 61.423 66.667 36.86 9.81 38.99 4.79
2043 2795 4.090057 GCTTGCGCAAGGTCCGAC 62.090 66.667 41.83 25.35 38.80 4.79
2051 2803 4.386951 TAGCTCCCGCTTGCGCAA 62.387 61.111 23.48 23.48 46.47 4.85
2053 2805 4.821589 AGTAGCTCCCGCTTGCGC 62.822 66.667 9.71 0.00 46.47 6.09
2054 2806 2.125512 AAGTAGCTCCCGCTTGCG 60.126 61.111 8.14 8.14 46.47 4.85
2055 2807 3.490890 CAAGTAGCTCCCGCTTGC 58.509 61.111 0.00 0.00 46.47 4.01
2063 2815 3.188786 CGCCGGTGCAAGTAGCTC 61.189 66.667 0.00 0.00 45.94 4.09
2064 2816 4.760047 CCGCCGGTGCAAGTAGCT 62.760 66.667 10.27 0.00 45.94 3.32
2096 2848 0.392193 CTGGCAGCTAGTGTTGGGAG 60.392 60.000 0.00 0.00 0.00 4.30
2110 2862 1.460305 GGATAGGAGGGCTCTGGCA 60.460 63.158 0.00 0.00 40.87 4.92
2114 2866 0.708007 AGGGAGGATAGGAGGGCTCT 60.708 60.000 0.00 0.00 0.00 4.09
2125 2877 1.826447 GAAGGGAATGGAGGGAGGAT 58.174 55.000 0.00 0.00 0.00 3.24
2129 2881 2.375345 GGCGAAGGGAATGGAGGGA 61.375 63.158 0.00 0.00 0.00 4.20
2209 2977 1.452110 CATCAAGATTCCGCACCACA 58.548 50.000 0.00 0.00 0.00 4.17
2219 2987 1.003580 ACCACCACTCGCATCAAGATT 59.996 47.619 0.00 0.00 0.00 2.40
2239 3007 1.331447 CGCAATCCAATCTTCGATGCA 59.669 47.619 0.00 0.00 0.00 3.96
2243 3011 0.392327 TGCCGCAATCCAATCTTCGA 60.392 50.000 0.00 0.00 0.00 3.71
2245 3013 0.248215 CGTGCCGCAATCCAATCTTC 60.248 55.000 0.00 0.00 0.00 2.87
2313 3081 2.281091 CCTCCCAAGGCCATGCAT 59.719 61.111 5.01 0.00 35.37 3.96
2332 3101 1.324740 CCGGACCCGATGACCAAGTA 61.325 60.000 10.42 0.00 42.83 2.24
2333 3102 2.656069 CCGGACCCGATGACCAAGT 61.656 63.158 10.42 0.00 42.83 3.16
2357 3126 2.336809 CCCTCTACGATGCCGCTC 59.663 66.667 0.00 0.00 39.95 5.03
2389 3158 4.278513 CAACCGGCCCTCCACCAA 62.279 66.667 0.00 0.00 0.00 3.67
2437 3208 0.109342 ATATAGCAGGGCACACTGGC 59.891 55.000 1.43 0.00 42.88 4.85
2440 3211 2.037772 GCTGTATATAGCAGGGCACACT 59.962 50.000 15.87 0.00 43.17 3.55
2532 3304 2.433604 TCGTAGTCGGGACTAGATGACT 59.566 50.000 8.73 6.47 43.84 3.41
2547 3319 2.233305 ATGTCTCCCCAACTCGTAGT 57.767 50.000 0.00 0.00 0.00 2.73
2574 3346 1.164041 CGGTCGGCTTGGTTTTCACT 61.164 55.000 0.00 0.00 0.00 3.41
2645 3420 3.448686 CATGAGTGGGTCGACAATAGTC 58.551 50.000 18.91 14.41 41.46 2.59
2709 3485 2.703416 GACAATGCAGTGTCTCCATCA 58.297 47.619 33.56 0.00 43.82 3.07
2715 3491 2.802816 GAGAAACGACAATGCAGTGTCT 59.197 45.455 35.77 22.89 44.79 3.41
2725 3501 2.492484 GCTCCCTAGAGAGAAACGACAA 59.508 50.000 5.28 0.00 43.39 3.18
2758 3535 1.266718 CCGGTGTCTTCCAATGTTGTG 59.733 52.381 0.00 0.00 0.00 3.33
2765 3542 1.263356 CTCCTACCGGTGTCTTCCAA 58.737 55.000 19.93 0.00 0.00 3.53
2776 3553 3.528370 CCGCTCCACCTCCTACCG 61.528 72.222 0.00 0.00 0.00 4.02
2779 3556 2.038975 AAGCCGCTCCACCTCCTA 59.961 61.111 0.00 0.00 0.00 2.94
2806 3583 1.299648 CATTCCCACCGAAGCTCCA 59.700 57.895 0.00 0.00 32.78 3.86
2820 3597 1.133790 GCCAGGCATGACTTGACATTC 59.866 52.381 6.55 0.00 34.87 2.67
2821 3598 1.180029 GCCAGGCATGACTTGACATT 58.820 50.000 6.55 0.00 34.87 2.71
2978 3758 1.798813 CACTTCCCTACACGCAAACTC 59.201 52.381 0.00 0.00 0.00 3.01
2989 3769 0.682852 CCAACGACACCACTTCCCTA 59.317 55.000 0.00 0.00 0.00 3.53
2995 3775 0.808453 CGACAACCAACGACACCACT 60.808 55.000 0.00 0.00 0.00 4.00
3009 3789 3.902086 TCGACGCCACCACGACAA 61.902 61.111 0.00 0.00 36.70 3.18
3054 3834 3.457380 CCCATCTTCAGGAAAGAGATCCA 59.543 47.826 0.00 0.00 46.95 3.41
3078 3858 2.759191 GCCATCATCATCGAACAGCTA 58.241 47.619 0.00 0.00 0.00 3.32
3082 3862 1.159713 GCCGCCATCATCATCGAACA 61.160 55.000 0.00 0.00 0.00 3.18
3104 3884 5.389620 CGTACACCACATGCATACGTTTTAA 60.390 40.000 0.00 0.00 35.17 1.52
3113 3893 1.533625 AAAGCGTACACCACATGCAT 58.466 45.000 0.00 0.00 0.00 3.96
3143 3923 3.382546 GGTATCGAAACCTACAGCTGGTA 59.617 47.826 19.93 7.22 36.69 3.25
3168 3948 1.218875 TGTGTTGTCGCCGATCACAC 61.219 55.000 19.30 19.30 34.74 3.82
3187 3972 8.011290 TGCTCTTACTCCCTATATCTAAAACCT 58.989 37.037 0.00 0.00 0.00 3.50
3255 4043 7.658982 TCTGACAAGAATATACATCAAGCCATC 59.341 37.037 0.00 0.00 0.00 3.51
3442 4253 5.007724 ACCGTTCAGACTTTTCTTTGATGTC 59.992 40.000 0.00 0.00 0.00 3.06
3476 4287 1.272480 TGCCTGTGCTCTCTAGGTGTA 60.272 52.381 0.00 0.00 38.71 2.90
3484 4295 2.172372 CGCTCATGCCTGTGCTCTC 61.172 63.158 13.00 0.00 39.24 3.20
3558 4369 6.684131 CACATGATTAGCTGATTGTGTTTACG 59.316 38.462 12.79 0.00 32.01 3.18
3577 4388 0.904649 CAGCTCCCTGGTACACATGA 59.095 55.000 0.00 0.00 35.38 3.07
3653 7863 3.054434 TGGTCTTGCTGGTATGCTATTGT 60.054 43.478 0.00 0.00 0.00 2.71
3657 7867 2.187958 ACTGGTCTTGCTGGTATGCTA 58.812 47.619 0.00 0.00 0.00 3.49
3664 7874 5.163364 ACATCTATTCTACTGGTCTTGCTGG 60.163 44.000 0.00 0.00 0.00 4.85
3730 7941 7.448748 ACCAAAGTCCATGTAATTTACTCAC 57.551 36.000 7.99 0.46 0.00 3.51
3731 7942 8.472007 AAACCAAAGTCCATGTAATTTACTCA 57.528 30.769 7.99 0.00 0.00 3.41
3733 7944 8.700973 ACAAAACCAAAGTCCATGTAATTTACT 58.299 29.630 7.99 0.00 0.00 2.24
3734 7945 8.760569 CACAAAACCAAAGTCCATGTAATTTAC 58.239 33.333 0.00 0.00 0.00 2.01
3735 7946 7.439655 GCACAAAACCAAAGTCCATGTAATTTA 59.560 33.333 0.00 0.00 0.00 1.40
3736 7947 6.259829 GCACAAAACCAAAGTCCATGTAATTT 59.740 34.615 0.00 0.00 0.00 1.82
3759 8001 2.827755 TGGATGTCCACTAACTAGGCA 58.172 47.619 0.00 0.00 42.01 4.75
3809 8052 8.984891 TTTTGCATACATGAGTCTTTAATTGG 57.015 30.769 0.00 0.00 0.00 3.16
3861 9313 8.816894 ACATACAGTAGTATATTTCCATGGGAG 58.183 37.037 13.02 0.00 38.88 4.30
4014 9520 8.780616 TCCCATATGTCATCCATAACAAAAAT 57.219 30.769 1.24 0.00 39.43 1.82
4225 9731 6.151648 CACCTCAACATGTTGGTTAGATGAAT 59.848 38.462 32.54 8.91 40.78 2.57
4295 9801 4.220382 ACAAGCAAGCTGGCAATTGTAATA 59.780 37.500 17.28 0.00 32.47 0.98
4571 10102 6.481313 TGCTTCTATTTACTAGCATGCTGAAG 59.519 38.462 30.42 26.96 38.61 3.02
4617 10163 0.998928 TGGCCACCCACATAATCACT 59.001 50.000 0.00 0.00 35.79 3.41
4618 10164 1.846007 TTGGCCACCCACATAATCAC 58.154 50.000 3.88 0.00 41.97 3.06
4619 10165 2.225242 ACTTTGGCCACCCACATAATCA 60.225 45.455 3.88 0.00 41.97 2.57
4624 10170 1.533753 CCACTTTGGCCACCCACAT 60.534 57.895 3.88 0.00 41.97 3.21
4625 10171 2.123511 CCACTTTGGCCACCCACA 60.124 61.111 3.88 0.00 41.97 4.17
4627 10173 1.760086 CAACCACTTTGGCCACCCA 60.760 57.895 3.88 0.00 42.67 4.51
4628 10174 1.744320 GACAACCACTTTGGCCACCC 61.744 60.000 3.88 0.00 42.67 4.61
4769 11391 7.121168 CCACTTTTTCCATGAACTGCTAATCTA 59.879 37.037 0.00 0.00 0.00 1.98
4922 12608 6.588373 GCTCAAGACTACTACCTTCTGAAAAG 59.412 42.308 0.00 0.00 0.00 2.27
5127 12813 1.909302 ACCCTTCATCACTGTACCCTG 59.091 52.381 0.00 0.00 0.00 4.45
5164 12850 2.363683 GCTGCAGCTCTTCAAGGTATT 58.636 47.619 31.33 0.00 38.21 1.89
5167 12853 4.393693 GCTGCAGCTCTTCAAGGT 57.606 55.556 31.33 0.00 38.21 3.50
5219 12905 1.779061 TTGTCAGCTTCCCCACCTCC 61.779 60.000 0.00 0.00 0.00 4.30
5240 12926 9.331282 CCAAAATAGATCTTGAGTACCCTTAAG 57.669 37.037 0.00 0.00 36.03 1.85
5292 12978 2.098614 GCACAGAGACTCCATCAGAGA 58.901 52.381 0.00 0.00 46.50 3.10
5321 13007 9.636789 TCCACAATCATCAGATTATGAATCTTT 57.363 29.630 0.00 0.00 45.75 2.52
5338 13024 3.469739 CCACGATCATCATCCACAATCA 58.530 45.455 0.00 0.00 0.00 2.57
5359 13045 2.199236 CGACAACCGAATACTTAGCCC 58.801 52.381 0.00 0.00 41.76 5.19
5402 13088 2.065899 AAAGCTTTGTACAGGGTGCA 57.934 45.000 11.80 0.00 0.00 4.57
5420 13106 5.654603 TGATAGGCAGAAGTAACTCGAAA 57.345 39.130 0.00 0.00 0.00 3.46
5422 13108 6.062749 ACTATGATAGGCAGAAGTAACTCGA 58.937 40.000 4.27 0.00 0.00 4.04
5477 13163 6.187727 TGAGAAAGGAGTGGAACAGTTAAT 57.812 37.500 0.00 0.00 45.14 1.40
5600 13286 8.916628 TGCTGCCAAAAGTATATGATATGTTA 57.083 30.769 0.00 0.00 0.00 2.41
5640 13326 2.567169 TCTTCGTCCACAACCATCTCAT 59.433 45.455 0.00 0.00 0.00 2.90
5667 13353 1.902508 TCCTTCTCCAACAGCGATCTT 59.097 47.619 0.00 0.00 0.00 2.40
5691 13377 2.099062 GCGTTCAAGCATCGGCAG 59.901 61.111 0.00 0.00 44.61 4.85
5706 13392 2.708514 GCTTGCACTGTATAACATGCG 58.291 47.619 0.00 0.00 36.28 4.73
5709 13395 2.352651 CAGCGCTTGCACTGTATAACAT 59.647 45.455 7.50 0.00 42.66 2.71
5712 13398 2.378445 TCAGCGCTTGCACTGTATAA 57.622 45.000 7.50 0.00 42.66 0.98
5797 13483 4.100344 TGTTAGTGCAGTCAAGGTAACAGA 59.900 41.667 0.00 0.00 41.41 3.41
5852 13538 3.885521 GAAGCCTGCATCAGCGCC 61.886 66.667 2.29 0.00 46.23 6.53
5957 13643 1.192428 AACCACGTAGGATCCACTCC 58.808 55.000 15.82 0.00 45.33 3.85
6158 13853 1.748244 CGTACCTCATCCTGGTCGGTA 60.748 57.143 0.00 0.00 38.88 4.02
6443 14421 1.903877 CTCCTCGTCCCCACTGCAAT 61.904 60.000 0.00 0.00 0.00 3.56
6532 14565 9.940974 ATATAAATAATGGGCACATGTGGATAT 57.059 29.630 26.55 0.10 37.40 1.63
6643 14873 5.245075 ACAAACATCGAAATTACATTGGGGT 59.755 36.000 0.00 0.00 0.00 4.95
6704 14967 4.816385 ACAGATGGGTTGCTATGTATTTCG 59.184 41.667 0.00 0.00 0.00 3.46
6890 15157 2.766263 TCTACCACCCAGTCTAATGCTG 59.234 50.000 0.00 0.00 0.00 4.41
7458 15765 9.883142 TGAAGACATTTTCTTGGTTTTTGTATT 57.117 25.926 0.00 0.00 45.24 1.89
7460 15767 9.528018 GATGAAGACATTTTCTTGGTTTTTGTA 57.472 29.630 0.00 0.00 45.24 2.41
7461 15768 7.222611 CGATGAAGACATTTTCTTGGTTTTTGT 59.777 33.333 0.00 0.00 45.24 2.83
7462 15769 7.222611 ACGATGAAGACATTTTCTTGGTTTTTG 59.777 33.333 0.00 0.00 45.24 2.44
7463 15770 7.264947 ACGATGAAGACATTTTCTTGGTTTTT 58.735 30.769 0.00 0.00 45.24 1.94
7464 15771 6.805713 ACGATGAAGACATTTTCTTGGTTTT 58.194 32.000 0.00 0.00 45.24 2.43
7465 15772 6.391227 ACGATGAAGACATTTTCTTGGTTT 57.609 33.333 0.00 0.00 45.24 3.27
7466 15773 6.391227 AACGATGAAGACATTTTCTTGGTT 57.609 33.333 0.00 0.00 45.24 3.67
7467 15774 6.391227 AAACGATGAAGACATTTTCTTGGT 57.609 33.333 0.00 0.00 45.24 3.67
7468 15775 7.698836 AAAAACGATGAAGACATTTTCTTGG 57.301 32.000 0.00 0.00 45.24 3.61
7471 15778 9.463443 CCTTTAAAAACGATGAAGACATTTTCT 57.537 29.630 0.00 0.00 36.82 2.52
7472 15779 9.244799 ACCTTTAAAAACGATGAAGACATTTTC 57.755 29.630 0.00 0.00 36.82 2.29
7473 15780 9.030301 CACCTTTAAAAACGATGAAGACATTTT 57.970 29.630 0.00 0.00 36.82 1.82
7474 15781 8.194769 ACACCTTTAAAAACGATGAAGACATTT 58.805 29.630 0.00 0.00 36.82 2.32
7475 15782 7.647715 CACACCTTTAAAAACGATGAAGACATT 59.352 33.333 0.00 0.00 36.82 2.71
7476 15783 7.138736 CACACCTTTAAAAACGATGAAGACAT 58.861 34.615 0.00 0.00 39.67 3.06
7477 15784 6.094325 ACACACCTTTAAAAACGATGAAGACA 59.906 34.615 0.00 0.00 0.00 3.41
7478 15785 6.413818 CACACACCTTTAAAAACGATGAAGAC 59.586 38.462 0.00 0.00 0.00 3.01
7479 15786 6.094325 ACACACACCTTTAAAAACGATGAAGA 59.906 34.615 0.00 0.00 0.00 2.87
7480 15787 6.262601 ACACACACCTTTAAAAACGATGAAG 58.737 36.000 0.00 0.00 0.00 3.02
7481 15788 6.197364 ACACACACCTTTAAAAACGATGAA 57.803 33.333 0.00 0.00 0.00 2.57
7482 15789 5.821516 ACACACACCTTTAAAAACGATGA 57.178 34.783 0.00 0.00 0.00 2.92
7483 15790 6.262601 AGAACACACACCTTTAAAAACGATG 58.737 36.000 0.00 0.00 0.00 3.84
7484 15791 6.445357 AGAACACACACCTTTAAAAACGAT 57.555 33.333 0.00 0.00 0.00 3.73
7485 15792 5.883503 AGAACACACACCTTTAAAAACGA 57.116 34.783 0.00 0.00 0.00 3.85
7486 15793 6.937886 AAAGAACACACACCTTTAAAAACG 57.062 33.333 0.00 0.00 0.00 3.60
7487 15794 8.528917 AGAAAAGAACACACACCTTTAAAAAC 57.471 30.769 0.00 0.00 30.75 2.43
7488 15795 9.549078 AAAGAAAAGAACACACACCTTTAAAAA 57.451 25.926 0.00 0.00 30.75 1.94
7489 15796 9.549078 AAAAGAAAAGAACACACACCTTTAAAA 57.451 25.926 0.00 0.00 30.75 1.52
7490 15797 9.549078 AAAAAGAAAAGAACACACACCTTTAAA 57.451 25.926 0.00 0.00 30.75 1.52
7491 15798 8.983724 CAAAAAGAAAAGAACACACACCTTTAA 58.016 29.630 0.00 0.00 30.75 1.52
7492 15799 7.600752 CCAAAAAGAAAAGAACACACACCTTTA 59.399 33.333 0.00 0.00 30.75 1.85
7493 15800 6.426633 CCAAAAAGAAAAGAACACACACCTTT 59.573 34.615 0.00 0.00 0.00 3.11
7494 15801 5.931724 CCAAAAAGAAAAGAACACACACCTT 59.068 36.000 0.00 0.00 0.00 3.50
7495 15802 5.478407 CCAAAAAGAAAAGAACACACACCT 58.522 37.500 0.00 0.00 0.00 4.00
7496 15803 4.629634 CCCAAAAAGAAAAGAACACACACC 59.370 41.667 0.00 0.00 0.00 4.16
7497 15804 4.629634 CCCCAAAAAGAAAAGAACACACAC 59.370 41.667 0.00 0.00 0.00 3.82
7498 15805 4.323104 CCCCCAAAAAGAAAAGAACACACA 60.323 41.667 0.00 0.00 0.00 3.72
7499 15806 4.081365 TCCCCCAAAAAGAAAAGAACACAC 60.081 41.667 0.00 0.00 0.00 3.82
7500 15807 4.097418 TCCCCCAAAAAGAAAAGAACACA 58.903 39.130 0.00 0.00 0.00 3.72
7501 15808 4.442893 CCTCCCCCAAAAAGAAAAGAACAC 60.443 45.833 0.00 0.00 0.00 3.32
7502 15809 3.709141 CCTCCCCCAAAAAGAAAAGAACA 59.291 43.478 0.00 0.00 0.00 3.18
7503 15810 3.071023 CCCTCCCCCAAAAAGAAAAGAAC 59.929 47.826 0.00 0.00 0.00 3.01
7504 15811 3.311028 ACCCTCCCCCAAAAAGAAAAGAA 60.311 43.478 0.00 0.00 0.00 2.52
7505 15812 2.248950 ACCCTCCCCCAAAAAGAAAAGA 59.751 45.455 0.00 0.00 0.00 2.52
7506 15813 2.368548 CACCCTCCCCCAAAAAGAAAAG 59.631 50.000 0.00 0.00 0.00 2.27
7507 15814 2.403561 CACCCTCCCCCAAAAAGAAAA 58.596 47.619 0.00 0.00 0.00 2.29
7508 15815 1.413808 CCACCCTCCCCCAAAAAGAAA 60.414 52.381 0.00 0.00 0.00 2.52
7509 15816 0.189822 CCACCCTCCCCCAAAAAGAA 59.810 55.000 0.00 0.00 0.00 2.52
7510 15817 1.735455 CCCACCCTCCCCCAAAAAGA 61.735 60.000 0.00 0.00 0.00 2.52
7511 15818 1.229177 CCCACCCTCCCCCAAAAAG 60.229 63.158 0.00 0.00 0.00 2.27
7512 15819 2.021652 ACCCACCCTCCCCCAAAAA 61.022 57.895 0.00 0.00 0.00 1.94


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.