Multiple sequence alignment - TraesCS6B01G015600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G015600 chr6B 100.000 1424 0 0 1 1424 9161652 9160229 0.000000e+00 2630.0
1 TraesCS6B01G015600 chr6B 100.000 575 0 0 1822 2396 9159831 9159257 0.000000e+00 1062.0
2 TraesCS6B01G015600 chr6B 76.465 1007 216 16 292 1291 584590654 584591646 5.870000e-146 527.0
3 TraesCS6B01G015600 chr6B 94.565 276 15 0 2118 2393 8926654 8926929 6.120000e-116 427.0
4 TraesCS6B01G015600 chr6B 90.960 177 15 1 1955 2130 708300858 708301034 1.110000e-58 237.0
5 TraesCS6B01G015600 chr6B 94.118 136 7 1 1822 1956 8926520 8926655 3.120000e-49 206.0
6 TraesCS6B01G015600 chr1D 91.696 1433 97 6 1 1424 3234702 3233283 0.000000e+00 1967.0
7 TraesCS6B01G015600 chr4A 93.110 1016 59 6 417 1422 140715636 140716650 0.000000e+00 1478.0
8 TraesCS6B01G015600 chr4A 87.097 62 8 0 2299 2360 501547791 501547852 1.190000e-08 71.3
9 TraesCS6B01G015600 chr7D 84.401 1436 205 12 3 1423 290541761 290543192 0.000000e+00 1393.0
10 TraesCS6B01G015600 chr7B 83.880 1433 210 14 3 1423 361566230 361567653 0.000000e+00 1347.0
11 TraesCS6B01G015600 chr7B 92.232 708 53 2 608 1314 68756078 68756784 0.000000e+00 1002.0
12 TraesCS6B01G015600 chr7B 90.805 174 15 1 1949 2122 563739844 563740016 5.150000e-57 231.0
13 TraesCS6B01G015600 chr2D 91.377 951 75 6 473 1418 73579728 73580676 0.000000e+00 1295.0
14 TraesCS6B01G015600 chr2D 92.216 167 13 0 1954 2120 134800142 134799976 1.110000e-58 237.0
15 TraesCS6B01G015600 chr2D 91.765 170 12 2 1955 2123 376861292 376861460 3.980000e-58 235.0
16 TraesCS6B01G015600 chr2D 91.228 171 14 1 1950 2119 32474298 32474468 5.150000e-57 231.0
17 TraesCS6B01G015600 chr2D 80.349 229 39 6 2148 2374 154824502 154824278 4.100000e-38 169.0
18 TraesCS6B01G015600 chr1A 92.865 883 60 2 545 1424 102376210 102377092 0.000000e+00 1279.0
19 TraesCS6B01G015600 chr7A 82.737 1425 231 13 6 1423 698841136 698839720 0.000000e+00 1254.0
20 TraesCS6B01G015600 chr7A 82.481 1427 228 15 6 1423 328984884 328986297 0.000000e+00 1230.0
21 TraesCS6B01G015600 chr5A 92.195 884 65 3 544 1424 477717379 477718261 0.000000e+00 1247.0
22 TraesCS6B01G015600 chr4B 78.702 1371 264 20 1 1358 191094246 191095601 0.000000e+00 889.0
23 TraesCS6B01G015600 chr6A 92.388 289 16 2 1 286 608052993 608053278 7.970000e-110 407.0
24 TraesCS6B01G015600 chr6A 88.849 278 22 3 2118 2393 3865276 3865006 1.370000e-87 333.0
25 TraesCS6B01G015600 chr6A 90.370 135 13 0 1822 1956 3865409 3865275 6.810000e-41 178.0
26 TraesCS6B01G015600 chr6D 89.407 236 18 2 2159 2393 4798636 4798407 8.380000e-75 291.0
27 TraesCS6B01G015600 chr3B 92.308 169 13 0 1951 2119 409603932 409603764 8.560000e-60 241.0
28 TraesCS6B01G015600 chr5D 92.727 165 12 0 1955 2119 396629490 396629326 3.080000e-59 239.0
29 TraesCS6B01G015600 chrUn 91.379 174 13 2 1955 2127 112299217 112299389 1.110000e-58 237.0
30 TraesCS6B01G015600 chr4D 90.341 176 15 2 1945 2120 62120643 62120470 1.850000e-56 230.0
31 TraesCS6B01G015600 chr1B 83.108 148 23 2 2213 2360 491256735 491256590 1.490000e-27 134.0
32 TraesCS6B01G015600 chr2A 86.047 86 9 3 2291 2374 145602291 145602375 3.280000e-14 89.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G015600 chr6B 9159257 9161652 2395 True 1846 2630 100.000 1 2396 2 chr6B.!!$R1 2395
1 TraesCS6B01G015600 chr6B 584590654 584591646 992 False 527 527 76.465 292 1291 1 chr6B.!!$F1 999
2 TraesCS6B01G015600 chr1D 3233283 3234702 1419 True 1967 1967 91.696 1 1424 1 chr1D.!!$R1 1423
3 TraesCS6B01G015600 chr4A 140715636 140716650 1014 False 1478 1478 93.110 417 1422 1 chr4A.!!$F1 1005
4 TraesCS6B01G015600 chr7D 290541761 290543192 1431 False 1393 1393 84.401 3 1423 1 chr7D.!!$F1 1420
5 TraesCS6B01G015600 chr7B 361566230 361567653 1423 False 1347 1347 83.880 3 1423 1 chr7B.!!$F2 1420
6 TraesCS6B01G015600 chr7B 68756078 68756784 706 False 1002 1002 92.232 608 1314 1 chr7B.!!$F1 706
7 TraesCS6B01G015600 chr2D 73579728 73580676 948 False 1295 1295 91.377 473 1418 1 chr2D.!!$F2 945
8 TraesCS6B01G015600 chr1A 102376210 102377092 882 False 1279 1279 92.865 545 1424 1 chr1A.!!$F1 879
9 TraesCS6B01G015600 chr7A 698839720 698841136 1416 True 1254 1254 82.737 6 1423 1 chr7A.!!$R1 1417
10 TraesCS6B01G015600 chr7A 328984884 328986297 1413 False 1230 1230 82.481 6 1423 1 chr7A.!!$F1 1417
11 TraesCS6B01G015600 chr5A 477717379 477718261 882 False 1247 1247 92.195 544 1424 1 chr5A.!!$F1 880
12 TraesCS6B01G015600 chr4B 191094246 191095601 1355 False 889 889 78.702 1 1358 1 chr4B.!!$F1 1357

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
121 123 0.249073 CTCACATTAGACTCCCGCCG 60.249 60.0 0.0 0.0 0.0 6.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1946 1978 0.17897 ACGGAGGGAGTATATGCGGT 60.179 55.0 0.0 0.0 31.55 5.68 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
48 50 2.896685 CCAGCCTTAACATCACCCAAAA 59.103 45.455 0.00 0.00 0.00 2.44
49 51 3.323403 CCAGCCTTAACATCACCCAAAAA 59.677 43.478 0.00 0.00 0.00 1.94
82 84 2.264455 CTATCCTCCTTCCCCCAGATG 58.736 57.143 0.00 0.00 0.00 2.90
119 121 2.961526 TTCTCACATTAGACTCCCGC 57.038 50.000 0.00 0.00 0.00 6.13
121 123 0.249073 CTCACATTAGACTCCCGCCG 60.249 60.000 0.00 0.00 0.00 6.46
159 161 5.457799 CCATCATTCAGCGCTTTCTAAAATG 59.542 40.000 7.50 11.08 0.00 2.32
189 197 1.075659 GGGCAGCCAAACCTCTCTT 59.924 57.895 15.19 0.00 0.00 2.85
259 267 4.390297 GCCACTCACTTTATGTCTGTCTTC 59.610 45.833 0.00 0.00 0.00 2.87
265 273 4.391216 CACTTTATGTCTGTCTTCAGGCTG 59.609 45.833 8.58 8.58 45.48 4.85
787 813 4.157958 CTTCTGCCGAGCTTGCGC 62.158 66.667 0.00 0.00 0.00 6.09
896 922 1.775385 GCCTACTCTCTGCTCTCCTT 58.225 55.000 0.00 0.00 0.00 3.36
906 932 2.639347 TCTGCTCTCCTTTGACCATGAA 59.361 45.455 0.00 0.00 0.00 2.57
982 1008 0.755686 CTTCGGCTGGCTCCTCTATT 59.244 55.000 0.00 0.00 0.00 1.73
1050 1077 1.682684 AGGATCGTCTTGCCCTCGT 60.683 57.895 0.00 0.00 0.00 4.18
1055 1082 2.317609 CGTCTTGCCCTCGTTGTGG 61.318 63.158 0.00 0.00 0.00 4.17
1074 1101 1.339438 GGCTTGTCTTCTGAGGATGCA 60.339 52.381 11.82 0.00 0.00 3.96
1114 1142 4.720902 CATGTGCGGCCCAGGTCA 62.721 66.667 0.00 0.00 0.00 4.02
1127 1155 0.631753 CAGGTCAGGTCCCTCCTAGA 59.368 60.000 0.00 0.00 46.24 2.43
1149 1177 2.448582 CCAGGCCCCTAACCGCATA 61.449 63.158 0.00 0.00 0.00 3.14
1279 1309 3.272574 TCCGTAACGAGATACACTCCT 57.727 47.619 0.00 0.00 42.18 3.69
1401 1433 5.182950 ACATCTCCTCTCGCTGTAATCTATG 59.817 44.000 0.00 0.00 0.00 2.23
1844 1876 6.744550 GTACGTGTTTATGCATCTAGGTAC 57.255 41.667 0.19 10.35 0.00 3.34
1845 1877 4.690122 ACGTGTTTATGCATCTAGGTACC 58.310 43.478 0.19 2.73 0.00 3.34
1846 1878 4.404715 ACGTGTTTATGCATCTAGGTACCT 59.595 41.667 20.57 20.57 0.00 3.08
1847 1879 5.595542 ACGTGTTTATGCATCTAGGTACCTA 59.404 40.000 20.60 20.60 0.00 3.08
1848 1880 6.097270 ACGTGTTTATGCATCTAGGTACCTAA 59.903 38.462 22.00 13.37 0.00 2.69
1849 1881 6.982141 CGTGTTTATGCATCTAGGTACCTAAA 59.018 38.462 22.00 10.48 0.00 1.85
1850 1882 7.656137 CGTGTTTATGCATCTAGGTACCTAAAT 59.344 37.037 22.00 12.52 0.00 1.40
1851 1883 8.989980 GTGTTTATGCATCTAGGTACCTAAATC 58.010 37.037 22.00 11.87 0.00 2.17
1852 1884 7.870954 TGTTTATGCATCTAGGTACCTAAATCG 59.129 37.037 22.00 10.89 0.00 3.34
1853 1885 7.770366 TTATGCATCTAGGTACCTAAATCGA 57.230 36.000 22.00 15.66 0.00 3.59
1854 1886 6.665992 ATGCATCTAGGTACCTAAATCGAA 57.334 37.500 22.00 6.75 0.00 3.71
1855 1887 5.839621 TGCATCTAGGTACCTAAATCGAAC 58.160 41.667 22.00 12.35 0.00 3.95
1856 1888 5.597182 TGCATCTAGGTACCTAAATCGAACT 59.403 40.000 22.00 0.33 0.00 3.01
1857 1889 6.097839 TGCATCTAGGTACCTAAATCGAACTT 59.902 38.462 22.00 0.00 0.00 2.66
1858 1890 6.641723 GCATCTAGGTACCTAAATCGAACTTC 59.358 42.308 22.00 4.40 0.00 3.01
1859 1891 7.470286 GCATCTAGGTACCTAAATCGAACTTCT 60.470 40.741 22.00 0.00 0.00 2.85
1860 1892 7.565323 TCTAGGTACCTAAATCGAACTTCTC 57.435 40.000 22.00 0.00 0.00 2.87
1861 1893 5.595257 AGGTACCTAAATCGAACTTCTCC 57.405 43.478 14.41 0.00 0.00 3.71
1862 1894 5.270794 AGGTACCTAAATCGAACTTCTCCT 58.729 41.667 14.41 0.00 0.00 3.69
1863 1895 5.720520 AGGTACCTAAATCGAACTTCTCCTT 59.279 40.000 14.41 0.00 0.00 3.36
1864 1896 6.212993 AGGTACCTAAATCGAACTTCTCCTTT 59.787 38.462 14.41 0.00 0.00 3.11
1865 1897 6.313164 GGTACCTAAATCGAACTTCTCCTTTG 59.687 42.308 4.06 0.00 0.00 2.77
1866 1898 5.246307 ACCTAAATCGAACTTCTCCTTTGG 58.754 41.667 0.00 0.00 0.00 3.28
1867 1899 4.095036 CCTAAATCGAACTTCTCCTTTGGC 59.905 45.833 0.00 0.00 0.00 4.52
1868 1900 1.726853 ATCGAACTTCTCCTTTGGCG 58.273 50.000 0.00 0.00 0.00 5.69
1869 1901 0.320421 TCGAACTTCTCCTTTGGCGG 60.320 55.000 0.00 0.00 0.00 6.13
1870 1902 1.876664 GAACTTCTCCTTTGGCGGC 59.123 57.895 0.00 0.00 0.00 6.53
1871 1903 0.889186 GAACTTCTCCTTTGGCGGCA 60.889 55.000 7.97 7.97 0.00 5.69
1872 1904 0.467290 AACTTCTCCTTTGGCGGCAA 60.467 50.000 21.79 21.79 0.00 4.52
1873 1905 0.890996 ACTTCTCCTTTGGCGGCAAG 60.891 55.000 24.20 17.32 0.00 4.01
1874 1906 1.589716 CTTCTCCTTTGGCGGCAAGG 61.590 60.000 24.47 24.47 42.16 3.61
1875 1907 3.064324 CTCCTTTGGCGGCAAGGG 61.064 66.667 37.48 37.48 41.25 3.95
1876 1908 3.567579 CTCCTTTGGCGGCAAGGGA 62.568 63.158 40.34 40.34 41.25 4.20
1877 1909 2.600173 CCTTTGGCGGCAAGGGAA 60.600 61.111 39.37 18.96 37.71 3.97
1878 1910 1.984026 CCTTTGGCGGCAAGGGAAT 60.984 57.895 39.37 0.00 37.71 3.01
1879 1911 1.543944 CCTTTGGCGGCAAGGGAATT 61.544 55.000 39.37 0.00 37.71 2.17
1880 1912 1.181786 CTTTGGCGGCAAGGGAATTA 58.818 50.000 23.84 7.81 0.00 1.40
1881 1913 1.548269 CTTTGGCGGCAAGGGAATTAA 59.452 47.619 23.84 7.08 0.00 1.40
1882 1914 1.859302 TTGGCGGCAAGGGAATTAAT 58.141 45.000 21.79 0.00 0.00 1.40
1883 1915 1.398692 TGGCGGCAAGGGAATTAATC 58.601 50.000 10.22 0.00 0.00 1.75
1906 1938 8.970859 ATCCATCTGTGAGGTAAATTAAAGAG 57.029 34.615 0.00 0.00 0.00 2.85
1907 1939 7.918076 TCCATCTGTGAGGTAAATTAAAGAGT 58.082 34.615 0.00 0.00 0.00 3.24
1908 1940 8.383175 TCCATCTGTGAGGTAAATTAAAGAGTT 58.617 33.333 0.00 0.00 0.00 3.01
1909 1941 8.454106 CCATCTGTGAGGTAAATTAAAGAGTTG 58.546 37.037 0.00 0.00 0.00 3.16
1910 1942 9.219603 CATCTGTGAGGTAAATTAAAGAGTTGA 57.780 33.333 0.00 0.00 0.00 3.18
1911 1943 9.965902 ATCTGTGAGGTAAATTAAAGAGTTGAT 57.034 29.630 0.00 0.00 0.00 2.57
1912 1944 9.793259 TCTGTGAGGTAAATTAAAGAGTTGATT 57.207 29.630 0.00 0.00 0.00 2.57
1917 1949 9.841880 GAGGTAAATTAAAGAGTTGATTTCACC 57.158 33.333 0.00 0.00 35.32 4.02
1918 1950 9.588096 AGGTAAATTAAAGAGTTGATTTCACCT 57.412 29.630 0.00 0.00 35.32 4.00
1925 1957 6.650427 AAGAGTTGATTTCACCTTTTACCC 57.350 37.500 0.00 0.00 0.00 3.69
1926 1958 5.953571 AGAGTTGATTTCACCTTTTACCCT 58.046 37.500 0.00 0.00 0.00 4.34
1927 1959 6.004574 AGAGTTGATTTCACCTTTTACCCTC 58.995 40.000 0.00 0.00 0.00 4.30
1928 1960 5.953571 AGTTGATTTCACCTTTTACCCTCT 58.046 37.500 0.00 0.00 0.00 3.69
1929 1961 7.017254 AGAGTTGATTTCACCTTTTACCCTCTA 59.983 37.037 0.00 0.00 0.00 2.43
1930 1962 7.699878 AGTTGATTTCACCTTTTACCCTCTAT 58.300 34.615 0.00 0.00 0.00 1.98
1931 1963 8.170730 AGTTGATTTCACCTTTTACCCTCTATT 58.829 33.333 0.00 0.00 0.00 1.73
1932 1964 8.803235 GTTGATTTCACCTTTTACCCTCTATTT 58.197 33.333 0.00 0.00 0.00 1.40
1933 1965 8.348285 TGATTTCACCTTTTACCCTCTATTTG 57.652 34.615 0.00 0.00 0.00 2.32
1934 1966 7.947890 TGATTTCACCTTTTACCCTCTATTTGT 59.052 33.333 0.00 0.00 0.00 2.83
1935 1967 7.519032 TTTCACCTTTTACCCTCTATTTGTG 57.481 36.000 0.00 0.00 0.00 3.33
1936 1968 6.195600 TCACCTTTTACCCTCTATTTGTGT 57.804 37.500 0.00 0.00 0.00 3.72
1937 1969 6.235664 TCACCTTTTACCCTCTATTTGTGTC 58.764 40.000 0.00 0.00 0.00 3.67
1938 1970 6.001460 CACCTTTTACCCTCTATTTGTGTCA 58.999 40.000 0.00 0.00 0.00 3.58
1939 1971 6.488683 CACCTTTTACCCTCTATTTGTGTCAA 59.511 38.462 0.00 0.00 0.00 3.18
1940 1972 7.013846 CACCTTTTACCCTCTATTTGTGTCAAA 59.986 37.037 0.00 0.00 0.00 2.69
1941 1973 7.230712 ACCTTTTACCCTCTATTTGTGTCAAAG 59.769 37.037 1.67 0.00 0.00 2.77
1942 1974 7.230712 CCTTTTACCCTCTATTTGTGTCAAAGT 59.769 37.037 1.67 0.00 0.00 2.66
1943 1975 7.739498 TTTACCCTCTATTTGTGTCAAAGTC 57.261 36.000 1.67 0.00 0.00 3.01
1944 1976 5.568620 ACCCTCTATTTGTGTCAAAGTCT 57.431 39.130 1.67 0.00 0.00 3.24
1945 1977 5.941788 ACCCTCTATTTGTGTCAAAGTCTT 58.058 37.500 1.67 0.00 0.00 3.01
1946 1978 7.074653 ACCCTCTATTTGTGTCAAAGTCTTA 57.925 36.000 1.67 0.00 0.00 2.10
1947 1979 6.935208 ACCCTCTATTTGTGTCAAAGTCTTAC 59.065 38.462 1.67 0.00 0.00 2.34
1948 1980 6.371825 CCCTCTATTTGTGTCAAAGTCTTACC 59.628 42.308 1.67 0.00 0.00 2.85
1949 1981 6.090898 CCTCTATTTGTGTCAAAGTCTTACCG 59.909 42.308 1.67 0.00 0.00 4.02
1950 1982 3.955771 TTTGTGTCAAAGTCTTACCGC 57.044 42.857 0.00 0.00 0.00 5.68
1951 1983 2.605837 TGTGTCAAAGTCTTACCGCA 57.394 45.000 0.00 0.00 0.00 5.69
1952 1984 3.120321 TGTGTCAAAGTCTTACCGCAT 57.880 42.857 0.00 0.00 0.00 4.73
1953 1985 4.260139 TGTGTCAAAGTCTTACCGCATA 57.740 40.909 0.00 0.00 0.00 3.14
1954 1986 4.827692 TGTGTCAAAGTCTTACCGCATAT 58.172 39.130 0.00 0.00 0.00 1.78
1955 1987 5.968254 TGTGTCAAAGTCTTACCGCATATA 58.032 37.500 0.00 0.00 0.00 0.86
1956 1988 5.808540 TGTGTCAAAGTCTTACCGCATATAC 59.191 40.000 0.00 0.00 0.00 1.47
1957 1989 6.040878 GTGTCAAAGTCTTACCGCATATACT 58.959 40.000 0.00 0.00 0.00 2.12
1958 1990 6.198591 GTGTCAAAGTCTTACCGCATATACTC 59.801 42.308 0.00 0.00 0.00 2.59
1959 1991 5.690857 GTCAAAGTCTTACCGCATATACTCC 59.309 44.000 0.00 0.00 0.00 3.85
1960 1992 4.868314 AAGTCTTACCGCATATACTCCC 57.132 45.455 0.00 0.00 0.00 4.30
1961 1993 4.115398 AGTCTTACCGCATATACTCCCT 57.885 45.455 0.00 0.00 0.00 4.20
1962 1994 4.080687 AGTCTTACCGCATATACTCCCTC 58.919 47.826 0.00 0.00 0.00 4.30
1963 1995 3.193056 GTCTTACCGCATATACTCCCTCC 59.807 52.174 0.00 0.00 0.00 4.30
1964 1996 1.830279 TACCGCATATACTCCCTCCG 58.170 55.000 0.00 0.00 0.00 4.63
1965 1997 0.178970 ACCGCATATACTCCCTCCGT 60.179 55.000 0.00 0.00 0.00 4.69
1966 1998 0.966920 CCGCATATACTCCCTCCGTT 59.033 55.000 0.00 0.00 0.00 4.44
1967 1999 1.067776 CCGCATATACTCCCTCCGTTC 60.068 57.143 0.00 0.00 0.00 3.95
1968 2000 1.067776 CGCATATACTCCCTCCGTTCC 60.068 57.143 0.00 0.00 0.00 3.62
1969 2001 1.275573 GCATATACTCCCTCCGTTCCC 59.724 57.143 0.00 0.00 0.00 3.97
1970 2002 2.605257 CATATACTCCCTCCGTTCCCA 58.395 52.381 0.00 0.00 0.00 4.37
1971 2003 2.852714 TATACTCCCTCCGTTCCCAA 57.147 50.000 0.00 0.00 0.00 4.12
1972 2004 1.961133 ATACTCCCTCCGTTCCCAAA 58.039 50.000 0.00 0.00 0.00 3.28
1973 2005 1.961133 TACTCCCTCCGTTCCCAAAT 58.039 50.000 0.00 0.00 0.00 2.32
1974 2006 1.961133 ACTCCCTCCGTTCCCAAATA 58.039 50.000 0.00 0.00 0.00 1.40
1975 2007 2.488836 ACTCCCTCCGTTCCCAAATAT 58.511 47.619 0.00 0.00 0.00 1.28
1976 2008 3.660959 ACTCCCTCCGTTCCCAAATATA 58.339 45.455 0.00 0.00 0.00 0.86
1977 2009 3.646637 ACTCCCTCCGTTCCCAAATATAG 59.353 47.826 0.00 0.00 0.00 1.31
1978 2010 2.976882 TCCCTCCGTTCCCAAATATAGG 59.023 50.000 0.00 0.00 0.00 2.57
1979 2011 2.709397 CCCTCCGTTCCCAAATATAGGT 59.291 50.000 0.00 0.00 0.00 3.08
1980 2012 3.244457 CCCTCCGTTCCCAAATATAGGTC 60.244 52.174 0.00 0.00 0.00 3.85
1981 2013 3.646637 CCTCCGTTCCCAAATATAGGTCT 59.353 47.826 0.00 0.00 0.00 3.85
1982 2014 4.102681 CCTCCGTTCCCAAATATAGGTCTT 59.897 45.833 0.00 0.00 0.00 3.01
1983 2015 5.397559 CCTCCGTTCCCAAATATAGGTCTTT 60.398 44.000 0.00 0.00 0.00 2.52
1984 2016 6.069705 TCCGTTCCCAAATATAGGTCTTTT 57.930 37.500 0.00 0.00 0.00 2.27
1985 2017 6.486941 TCCGTTCCCAAATATAGGTCTTTTT 58.513 36.000 0.00 0.00 0.00 1.94
1986 2018 7.631933 TCCGTTCCCAAATATAGGTCTTTTTA 58.368 34.615 0.00 0.00 0.00 1.52
1987 2019 7.771826 TCCGTTCCCAAATATAGGTCTTTTTAG 59.228 37.037 0.00 0.00 0.00 1.85
1988 2020 7.771826 CCGTTCCCAAATATAGGTCTTTTTAGA 59.228 37.037 0.00 0.00 0.00 2.10
1989 2021 9.338622 CGTTCCCAAATATAGGTCTTTTTAGAT 57.661 33.333 0.00 0.00 0.00 1.98
2016 2048 8.795786 TTTCAACAAATGACTACATACAAAGC 57.204 30.769 0.00 0.00 37.92 3.51
2017 2049 7.503521 TCAACAAATGACTACATACAAAGCA 57.496 32.000 0.00 0.00 35.50 3.91
2018 2050 7.935520 TCAACAAATGACTACATACAAAGCAA 58.064 30.769 0.00 0.00 35.50 3.91
2019 2051 8.409371 TCAACAAATGACTACATACAAAGCAAA 58.591 29.630 0.00 0.00 35.50 3.68
2020 2052 8.693504 CAACAAATGACTACATACAAAGCAAAG 58.306 33.333 0.00 0.00 35.50 2.77
2021 2053 7.940850 ACAAATGACTACATACAAAGCAAAGT 58.059 30.769 0.00 0.00 35.50 2.66
2022 2054 7.862372 ACAAATGACTACATACAAAGCAAAGTG 59.138 33.333 0.00 0.00 35.50 3.16
2023 2055 7.744087 AATGACTACATACAAAGCAAAGTGA 57.256 32.000 0.00 0.00 35.50 3.41
2024 2056 6.785488 TGACTACATACAAAGCAAAGTGAG 57.215 37.500 0.00 0.00 0.00 3.51
2025 2057 6.288294 TGACTACATACAAAGCAAAGTGAGT 58.712 36.000 0.00 0.00 0.00 3.41
2026 2058 6.202762 TGACTACATACAAAGCAAAGTGAGTG 59.797 38.462 0.00 0.00 0.00 3.51
2027 2059 6.288294 ACTACATACAAAGCAAAGTGAGTGA 58.712 36.000 0.00 0.00 0.00 3.41
2028 2060 6.765989 ACTACATACAAAGCAAAGTGAGTGAA 59.234 34.615 0.00 0.00 0.00 3.18
2029 2061 6.639632 ACATACAAAGCAAAGTGAGTGAAT 57.360 33.333 0.00 0.00 0.00 2.57
2030 2062 6.672147 ACATACAAAGCAAAGTGAGTGAATC 58.328 36.000 0.00 0.00 0.00 2.52
2031 2063 6.488006 ACATACAAAGCAAAGTGAGTGAATCT 59.512 34.615 0.00 0.00 0.00 2.40
2032 2064 7.661437 ACATACAAAGCAAAGTGAGTGAATCTA 59.339 33.333 0.00 0.00 0.00 1.98
2033 2065 6.305693 ACAAAGCAAAGTGAGTGAATCTAC 57.694 37.500 0.00 0.00 0.00 2.59
2034 2066 5.822519 ACAAAGCAAAGTGAGTGAATCTACA 59.177 36.000 0.00 0.00 0.00 2.74
2035 2067 5.931441 AAGCAAAGTGAGTGAATCTACAC 57.069 39.130 0.00 0.00 40.60 2.90
2075 2107 6.964807 ATACATACGTATGGTGTAGTCCAA 57.035 37.500 32.83 10.35 41.09 3.53
2076 2108 5.864418 ACATACGTATGGTGTAGTCCAAT 57.136 39.130 32.83 10.16 41.09 3.16
2077 2109 6.229936 ACATACGTATGGTGTAGTCCAATT 57.770 37.500 32.83 9.98 41.09 2.32
2078 2110 6.046593 ACATACGTATGGTGTAGTCCAATTG 58.953 40.000 32.83 9.79 41.09 2.32
2079 2111 4.811969 ACGTATGGTGTAGTCCAATTGA 57.188 40.909 7.12 0.00 41.09 2.57
2080 2112 5.155278 ACGTATGGTGTAGTCCAATTGAA 57.845 39.130 7.12 0.00 41.09 2.69
2081 2113 5.553123 ACGTATGGTGTAGTCCAATTGAAA 58.447 37.500 7.12 0.00 41.09 2.69
2082 2114 6.177610 ACGTATGGTGTAGTCCAATTGAAAT 58.822 36.000 7.12 0.00 41.09 2.17
2083 2115 6.093495 ACGTATGGTGTAGTCCAATTGAAATG 59.907 38.462 7.12 0.00 41.09 2.32
2084 2116 6.093495 CGTATGGTGTAGTCCAATTGAAATGT 59.907 38.462 7.12 0.00 41.09 2.71
2085 2117 6.916360 ATGGTGTAGTCCAATTGAAATGTT 57.084 33.333 7.12 0.00 41.09 2.71
2086 2118 6.325919 TGGTGTAGTCCAATTGAAATGTTC 57.674 37.500 7.12 0.00 34.24 3.18
2087 2119 5.830457 TGGTGTAGTCCAATTGAAATGTTCA 59.170 36.000 7.12 0.00 34.50 3.18
2088 2120 6.322456 TGGTGTAGTCCAATTGAAATGTTCAA 59.678 34.615 7.12 5.92 41.89 2.69
2089 2121 7.147828 TGGTGTAGTCCAATTGAAATGTTCAAA 60.148 33.333 7.12 0.00 41.45 2.69
2114 2146 8.959705 AAAGACTTATATTTAGGAACGAAGGG 57.040 34.615 0.00 0.00 0.00 3.95
2115 2147 7.909485 AGACTTATATTTAGGAACGAAGGGA 57.091 36.000 0.00 0.00 0.00 4.20
2116 2148 7.953752 AGACTTATATTTAGGAACGAAGGGAG 58.046 38.462 0.00 0.00 0.00 4.30
2117 2149 7.564292 AGACTTATATTTAGGAACGAAGGGAGT 59.436 37.037 0.00 0.00 0.00 3.85
2118 2150 8.773033 ACTTATATTTAGGAACGAAGGGAGTA 57.227 34.615 0.00 0.00 0.00 2.59
2119 2151 9.377238 ACTTATATTTAGGAACGAAGGGAGTAT 57.623 33.333 0.00 0.00 0.00 2.12
2125 2157 9.916360 ATTTAGGAACGAAGGGAGTATTATTTT 57.084 29.630 0.00 0.00 0.00 1.82
2126 2158 9.743581 TTTAGGAACGAAGGGAGTATTATTTTT 57.256 29.630 0.00 0.00 0.00 1.94
2127 2159 7.860918 AGGAACGAAGGGAGTATTATTTTTC 57.139 36.000 0.00 0.00 0.00 2.29
2128 2160 7.631007 AGGAACGAAGGGAGTATTATTTTTCT 58.369 34.615 0.00 0.00 0.00 2.52
2129 2161 7.769507 AGGAACGAAGGGAGTATTATTTTTCTC 59.230 37.037 0.00 0.00 0.00 2.87
2130 2162 7.769507 GGAACGAAGGGAGTATTATTTTTCTCT 59.230 37.037 0.00 0.00 0.00 3.10
2131 2163 8.494016 AACGAAGGGAGTATTATTTTTCTCTG 57.506 34.615 0.00 0.00 0.00 3.35
2132 2164 7.848128 ACGAAGGGAGTATTATTTTTCTCTGA 58.152 34.615 0.00 0.00 0.00 3.27
2133 2165 8.487028 ACGAAGGGAGTATTATTTTTCTCTGAT 58.513 33.333 0.00 0.00 0.00 2.90
2134 2166 9.331282 CGAAGGGAGTATTATTTTTCTCTGATT 57.669 33.333 0.00 0.00 0.00 2.57
2146 2178 8.950403 ATTTTTCTCTGATTTTTGCGTACTAC 57.050 30.769 0.00 0.00 0.00 2.73
2147 2179 7.485418 TTTTCTCTGATTTTTGCGTACTACA 57.515 32.000 0.00 0.00 0.00 2.74
2148 2180 7.667043 TTTCTCTGATTTTTGCGTACTACAT 57.333 32.000 0.00 0.00 0.00 2.29
2149 2181 6.647212 TCTCTGATTTTTGCGTACTACATG 57.353 37.500 0.00 0.00 0.00 3.21
2150 2182 5.063438 TCTCTGATTTTTGCGTACTACATGC 59.937 40.000 0.00 0.00 39.82 4.06
2162 2194 7.033185 TGCGTACTACATGCATATATACAAGG 58.967 38.462 0.00 0.00 44.36 3.61
2163 2195 7.094118 TGCGTACTACATGCATATATACAAGGA 60.094 37.037 0.00 0.00 44.36 3.36
2164 2196 7.758076 GCGTACTACATGCATATATACAAGGAA 59.242 37.037 0.00 0.00 39.15 3.36
2165 2197 9.803315 CGTACTACATGCATATATACAAGGAAT 57.197 33.333 0.00 0.00 0.00 3.01
2218 2250 9.840427 ACATAAACAATGAGCAAGTATTAACAC 57.160 29.630 0.00 0.00 39.07 3.32
2224 2256 8.184192 ACAATGAGCAAGTATTAACACTTATGC 58.816 33.333 0.00 0.52 36.61 3.14
2225 2257 7.864108 ATGAGCAAGTATTAACACTTATGCA 57.136 32.000 11.94 5.47 36.61 3.96
2226 2258 7.072177 TGAGCAAGTATTAACACTTATGCAC 57.928 36.000 11.94 7.07 36.61 4.57
2227 2259 6.878923 TGAGCAAGTATTAACACTTATGCACT 59.121 34.615 11.94 0.70 36.61 4.40
2228 2260 7.390440 TGAGCAAGTATTAACACTTATGCACTT 59.610 33.333 11.94 0.00 36.61 3.16
2229 2261 7.530010 AGCAAGTATTAACACTTATGCACTTG 58.470 34.615 11.94 6.74 42.71 3.16
2230 2262 7.390440 AGCAAGTATTAACACTTATGCACTTGA 59.610 33.333 11.94 0.00 42.54 3.02
2231 2263 8.020819 GCAAGTATTAACACTTATGCACTTGAA 58.979 33.333 13.62 0.00 42.54 2.69
2232 2264 9.546909 CAAGTATTAACACTTATGCACTTGAAG 57.453 33.333 0.00 0.00 42.54 3.02
2233 2265 7.752695 AGTATTAACACTTATGCACTTGAAGC 58.247 34.615 0.00 0.00 0.00 3.86
2235 2267 3.904136 ACACTTATGCACTTGAAGCAC 57.096 42.857 0.00 0.00 45.95 4.40
2236 2268 3.213506 ACACTTATGCACTTGAAGCACA 58.786 40.909 0.00 0.00 45.95 4.57
2237 2269 3.003689 ACACTTATGCACTTGAAGCACAC 59.996 43.478 0.00 0.00 45.95 3.82
2238 2270 3.003585 CACTTATGCACTTGAAGCACACA 59.996 43.478 0.00 0.00 45.95 3.72
2239 2271 3.822735 ACTTATGCACTTGAAGCACACAT 59.177 39.130 0.00 0.00 45.95 3.21
2240 2272 5.003160 ACTTATGCACTTGAAGCACACATA 58.997 37.500 0.00 0.00 45.95 2.29
2241 2273 5.473162 ACTTATGCACTTGAAGCACACATAA 59.527 36.000 0.00 1.55 45.95 1.90
2242 2274 4.852134 ATGCACTTGAAGCACACATAAA 57.148 36.364 0.00 0.00 45.95 1.40
2243 2275 4.227512 TGCACTTGAAGCACACATAAAG 57.772 40.909 0.00 0.00 37.02 1.85
2244 2276 2.982470 GCACTTGAAGCACACATAAAGC 59.018 45.455 0.00 0.00 0.00 3.51
2245 2277 3.550639 GCACTTGAAGCACACATAAAGCA 60.551 43.478 0.00 0.00 0.00 3.91
2246 2278 3.976942 CACTTGAAGCACACATAAAGCAC 59.023 43.478 0.00 0.00 0.00 4.40
2247 2279 3.885297 ACTTGAAGCACACATAAAGCACT 59.115 39.130 0.00 0.00 0.00 4.40
2248 2280 5.049474 CACTTGAAGCACACATAAAGCACTA 60.049 40.000 0.00 0.00 0.00 2.74
2249 2281 5.707298 ACTTGAAGCACACATAAAGCACTAT 59.293 36.000 0.00 0.00 0.00 2.12
2250 2282 6.878923 ACTTGAAGCACACATAAAGCACTATA 59.121 34.615 0.00 0.00 0.00 1.31
2251 2283 7.390440 ACTTGAAGCACACATAAAGCACTATAA 59.610 33.333 0.00 0.00 0.00 0.98
2252 2284 7.307493 TGAAGCACACATAAAGCACTATAAG 57.693 36.000 0.00 0.00 0.00 1.73
2253 2285 6.316140 TGAAGCACACATAAAGCACTATAAGG 59.684 38.462 0.00 0.00 0.00 2.69
2254 2286 5.745227 AGCACACATAAAGCACTATAAGGT 58.255 37.500 0.00 0.00 0.00 3.50
2255 2287 5.586243 AGCACACATAAAGCACTATAAGGTG 59.414 40.000 0.00 0.00 39.91 4.00
2269 2301 8.165239 CACTATAAGGTGCTAAAAATATGCCA 57.835 34.615 0.00 0.00 0.00 4.92
2270 2302 8.629158 CACTATAAGGTGCTAAAAATATGCCAA 58.371 33.333 0.00 0.00 0.00 4.52
2271 2303 9.196139 ACTATAAGGTGCTAAAAATATGCCAAA 57.804 29.630 0.00 0.00 0.00 3.28
2276 2308 8.716646 AGGTGCTAAAAATATGCCAAATAAAC 57.283 30.769 0.00 0.00 0.00 2.01
2277 2309 7.768582 AGGTGCTAAAAATATGCCAAATAAACC 59.231 33.333 0.00 0.00 0.00 3.27
2278 2310 7.550906 GGTGCTAAAAATATGCCAAATAAACCA 59.449 33.333 0.00 0.00 0.00 3.67
2279 2311 8.387354 GTGCTAAAAATATGCCAAATAAACCAC 58.613 33.333 0.00 0.00 0.00 4.16
2280 2312 8.317679 TGCTAAAAATATGCCAAATAAACCACT 58.682 29.630 0.00 0.00 0.00 4.00
2281 2313 9.810545 GCTAAAAATATGCCAAATAAACCACTA 57.189 29.630 0.00 0.00 0.00 2.74
2284 2316 9.869757 AAAAATATGCCAAATAAACCACTAGTC 57.130 29.630 0.00 0.00 0.00 2.59
2285 2317 8.823220 AAATATGCCAAATAAACCACTAGTCT 57.177 30.769 0.00 0.00 0.00 3.24
2286 2318 8.823220 AATATGCCAAATAAACCACTAGTCTT 57.177 30.769 0.00 0.00 0.00 3.01
2287 2319 6.759497 ATGCCAAATAAACCACTAGTCTTC 57.241 37.500 0.00 0.00 0.00 2.87
2288 2320 5.626142 TGCCAAATAAACCACTAGTCTTCA 58.374 37.500 0.00 0.00 0.00 3.02
2289 2321 6.245408 TGCCAAATAAACCACTAGTCTTCAT 58.755 36.000 0.00 0.00 0.00 2.57
2290 2322 7.398829 TGCCAAATAAACCACTAGTCTTCATA 58.601 34.615 0.00 0.00 0.00 2.15
2291 2323 8.052748 TGCCAAATAAACCACTAGTCTTCATAT 58.947 33.333 0.00 0.00 0.00 1.78
2292 2324 8.345565 GCCAAATAAACCACTAGTCTTCATATG 58.654 37.037 0.00 0.00 0.00 1.78
2293 2325 9.396022 CCAAATAAACCACTAGTCTTCATATGT 57.604 33.333 1.90 0.00 0.00 2.29
2297 2329 7.482169 AAACCACTAGTCTTCATATGTCTCA 57.518 36.000 1.90 0.00 0.00 3.27
2298 2330 7.667575 AACCACTAGTCTTCATATGTCTCAT 57.332 36.000 1.90 0.00 0.00 2.90
2299 2331 7.283625 ACCACTAGTCTTCATATGTCTCATC 57.716 40.000 1.90 0.00 0.00 2.92
2300 2332 7.066142 ACCACTAGTCTTCATATGTCTCATCT 58.934 38.462 1.90 0.00 0.00 2.90
2301 2333 7.230510 ACCACTAGTCTTCATATGTCTCATCTC 59.769 40.741 1.90 0.00 0.00 2.75
2302 2334 7.230309 CCACTAGTCTTCATATGTCTCATCTCA 59.770 40.741 1.90 0.00 0.00 3.27
2303 2335 8.795513 CACTAGTCTTCATATGTCTCATCTCAT 58.204 37.037 1.90 0.00 0.00 2.90
2307 2339 8.306038 AGTCTTCATATGTCTCATCTCATAAGC 58.694 37.037 1.90 0.00 31.67 3.09
2308 2340 8.087136 GTCTTCATATGTCTCATCTCATAAGCA 58.913 37.037 1.90 0.00 31.67 3.91
2309 2341 8.645110 TCTTCATATGTCTCATCTCATAAGCAA 58.355 33.333 1.90 0.00 31.67 3.91
2310 2342 9.269453 CTTCATATGTCTCATCTCATAAGCAAA 57.731 33.333 1.90 0.00 31.67 3.68
2311 2343 8.828688 TCATATGTCTCATCTCATAAGCAAAG 57.171 34.615 1.90 0.00 31.67 2.77
2312 2344 8.645110 TCATATGTCTCATCTCATAAGCAAAGA 58.355 33.333 1.90 0.00 31.67 2.52
2313 2345 9.438228 CATATGTCTCATCTCATAAGCAAAGAT 57.562 33.333 0.00 0.00 31.67 2.40
2316 2348 6.927936 TGTCTCATCTCATAAGCAAAGATAGC 59.072 38.462 0.00 0.00 0.00 2.97
2317 2349 6.927936 GTCTCATCTCATAAGCAAAGATAGCA 59.072 38.462 0.00 0.00 0.00 3.49
2318 2350 7.603404 GTCTCATCTCATAAGCAAAGATAGCAT 59.397 37.037 0.00 0.00 0.00 3.79
2319 2351 7.818446 TCTCATCTCATAAGCAAAGATAGCATC 59.182 37.037 0.00 0.00 0.00 3.91
2320 2352 6.877855 TCATCTCATAAGCAAAGATAGCATCC 59.122 38.462 0.00 0.00 0.00 3.51
2321 2353 6.178607 TCTCATAAGCAAAGATAGCATCCA 57.821 37.500 0.00 0.00 0.00 3.41
2322 2354 5.994054 TCTCATAAGCAAAGATAGCATCCAC 59.006 40.000 0.00 0.00 0.00 4.02
2323 2355 5.683681 TCATAAGCAAAGATAGCATCCACA 58.316 37.500 0.00 0.00 0.00 4.17
2324 2356 6.301486 TCATAAGCAAAGATAGCATCCACAT 58.699 36.000 0.00 0.00 0.00 3.21
2325 2357 7.452562 TCATAAGCAAAGATAGCATCCACATA 58.547 34.615 0.00 0.00 0.00 2.29
2326 2358 8.105197 TCATAAGCAAAGATAGCATCCACATAT 58.895 33.333 0.00 0.00 0.00 1.78
2327 2359 8.737175 CATAAGCAAAGATAGCATCCACATATT 58.263 33.333 0.00 0.00 0.00 1.28
2328 2360 6.570672 AGCAAAGATAGCATCCACATATTG 57.429 37.500 0.00 0.00 0.00 1.90
2329 2361 5.048224 AGCAAAGATAGCATCCACATATTGC 60.048 40.000 0.00 0.00 39.61 3.56
2339 2371 8.553459 AGCATCCACATATTGCTAGTTAATAC 57.447 34.615 0.00 0.00 44.51 1.89
2340 2372 8.378565 AGCATCCACATATTGCTAGTTAATACT 58.621 33.333 0.00 0.00 44.51 2.12
2341 2373 9.003658 GCATCCACATATTGCTAGTTAATACTT 57.996 33.333 4.41 0.00 35.78 2.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
15 16 1.136828 AAGGCTGGTTGTGTGGTCTA 58.863 50.000 0.00 0.00 0.00 2.59
16 17 1.136828 TAAGGCTGGTTGTGTGGTCT 58.863 50.000 0.00 0.00 0.00 3.85
48 50 6.394345 AGGAGGATAGGTCACAGAAATTTT 57.606 37.500 0.00 0.00 0.00 1.82
49 51 6.394345 AAGGAGGATAGGTCACAGAAATTT 57.606 37.500 0.00 0.00 0.00 1.82
50 52 5.104318 GGAAGGAGGATAGGTCACAGAAATT 60.104 44.000 0.00 0.00 0.00 1.82
51 53 4.410555 GGAAGGAGGATAGGTCACAGAAAT 59.589 45.833 0.00 0.00 0.00 2.17
53 55 3.375699 GGAAGGAGGATAGGTCACAGAA 58.624 50.000 0.00 0.00 0.00 3.02
54 56 2.359355 GGGAAGGAGGATAGGTCACAGA 60.359 54.545 0.00 0.00 0.00 3.41
119 121 3.053896 GGGTTCAAAGGCCGACGG 61.054 66.667 10.29 10.29 0.00 4.79
121 123 0.608035 TGATGGGTTCAAAGGCCGAC 60.608 55.000 0.00 0.00 0.00 4.79
159 161 4.106925 CTGCCCACCCAGAGAGGC 62.107 72.222 0.00 0.00 45.96 4.70
183 191 3.423162 CTGGCTCCGCGGAAGAGAG 62.423 68.421 30.53 18.18 36.47 3.20
189 197 2.361992 TTAGTCTGGCTCCGCGGA 60.362 61.111 29.03 29.03 0.00 5.54
259 267 0.615331 TAGTCTTCTTGGGCAGCCTG 59.385 55.000 12.43 2.21 0.00 4.85
265 273 3.696548 CCCTTTTGATAGTCTTCTTGGGC 59.303 47.826 0.00 0.00 0.00 5.36
420 434 5.579511 GTGAATTTCATGAGAAGGCAATTGG 59.420 40.000 7.72 0.00 34.71 3.16
787 813 3.119173 TCCTGCAACAAAGACAAAACAGG 60.119 43.478 0.00 0.00 43.84 4.00
812 838 1.062002 CGGGCGCATTACTTGTTGTAG 59.938 52.381 10.83 0.00 32.08 2.74
816 842 1.632046 CGTCGGGCGCATTACTTGTT 61.632 55.000 10.83 0.00 0.00 2.83
822 848 2.202690 CTGTCGTCGGGCGCATTA 60.203 61.111 10.83 0.00 41.07 1.90
896 922 3.855255 TGAGGTCAAGTTCATGGTCAA 57.145 42.857 0.00 0.00 0.00 3.18
906 932 1.071471 CCCTGCGTTGAGGTCAAGT 59.929 57.895 0.00 0.00 36.39 3.16
982 1008 2.225791 ATCGTGCTTAGCCTGTCGCA 62.226 55.000 0.29 0.00 41.38 5.10
1023 1049 3.432326 GGCAAGACGATCCTGAGGTAATT 60.432 47.826 0.00 0.00 0.00 1.40
1032 1058 1.258445 AACGAGGGCAAGACGATCCT 61.258 55.000 0.00 0.00 0.00 3.24
1050 1077 1.768275 TCCTCAGAAGACAAGCCACAA 59.232 47.619 0.00 0.00 0.00 3.33
1055 1082 2.105006 TGCATCCTCAGAAGACAAGC 57.895 50.000 0.00 0.00 0.00 4.01
1114 1142 4.047349 CCTGGAGTTCTAGGAGGGACCT 62.047 59.091 5.67 0.00 46.37 3.85
1127 1155 2.298661 CGGTTAGGGGCCTGGAGTT 61.299 63.158 0.84 0.00 0.00 3.01
1279 1309 9.186837 GATAATGTTCCGAATAGTATCTAGGGA 57.813 37.037 14.53 0.00 30.24 4.20
1307 1337 2.795329 AGGACCAAAGCGTGAAATCAT 58.205 42.857 0.00 0.00 0.00 2.45
1343 1373 1.227292 GCAGCCTCCCTACTAACGC 60.227 63.158 0.00 0.00 0.00 4.84
1821 1853 5.689068 GGTACCTAGATGCATAAACACGTAC 59.311 44.000 4.06 6.02 0.00 3.67
1822 1854 5.595542 AGGTACCTAGATGCATAAACACGTA 59.404 40.000 14.41 0.00 0.00 3.57
1823 1855 4.404715 AGGTACCTAGATGCATAAACACGT 59.595 41.667 14.41 0.00 0.00 4.49
1824 1856 4.945246 AGGTACCTAGATGCATAAACACG 58.055 43.478 14.41 0.00 0.00 4.49
1825 1857 8.904099 ATTTAGGTACCTAGATGCATAAACAC 57.096 34.615 21.20 0.00 0.00 3.32
1826 1858 7.870954 CGATTTAGGTACCTAGATGCATAAACA 59.129 37.037 25.58 3.82 0.00 2.83
1827 1859 8.086522 TCGATTTAGGTACCTAGATGCATAAAC 58.913 37.037 25.58 12.00 0.00 2.01
1828 1860 8.185506 TCGATTTAGGTACCTAGATGCATAAA 57.814 34.615 25.58 15.32 0.00 1.40
1829 1861 7.770366 TCGATTTAGGTACCTAGATGCATAA 57.230 36.000 25.58 14.43 0.00 1.90
1830 1862 7.450634 AGTTCGATTTAGGTACCTAGATGCATA 59.549 37.037 25.58 6.43 0.00 3.14
1831 1863 6.267928 AGTTCGATTTAGGTACCTAGATGCAT 59.732 38.462 25.58 12.69 0.00 3.96
1832 1864 5.597182 AGTTCGATTTAGGTACCTAGATGCA 59.403 40.000 25.58 11.48 0.00 3.96
1833 1865 6.086785 AGTTCGATTTAGGTACCTAGATGC 57.913 41.667 25.58 16.54 0.00 3.91
1834 1866 7.942990 AGAAGTTCGATTTAGGTACCTAGATG 58.057 38.462 25.58 17.86 0.00 2.90
1835 1867 7.231115 GGAGAAGTTCGATTTAGGTACCTAGAT 59.769 40.741 21.83 21.83 0.00 1.98
1836 1868 6.545298 GGAGAAGTTCGATTTAGGTACCTAGA 59.455 42.308 20.79 17.50 0.00 2.43
1837 1869 6.546772 AGGAGAAGTTCGATTTAGGTACCTAG 59.453 42.308 20.79 10.28 0.00 3.02
1838 1870 6.430007 AGGAGAAGTTCGATTTAGGTACCTA 58.570 40.000 18.10 18.10 0.00 3.08
1839 1871 5.270794 AGGAGAAGTTCGATTTAGGTACCT 58.729 41.667 20.57 20.57 0.00 3.08
1840 1872 5.595257 AGGAGAAGTTCGATTTAGGTACC 57.405 43.478 2.73 2.73 0.00 3.34
1841 1873 6.313164 CCAAAGGAGAAGTTCGATTTAGGTAC 59.687 42.308 0.00 0.00 0.00 3.34
1842 1874 6.403878 CCAAAGGAGAAGTTCGATTTAGGTA 58.596 40.000 0.00 0.00 0.00 3.08
1843 1875 5.246307 CCAAAGGAGAAGTTCGATTTAGGT 58.754 41.667 0.00 0.00 0.00 3.08
1844 1876 4.095036 GCCAAAGGAGAAGTTCGATTTAGG 59.905 45.833 0.00 6.11 0.00 2.69
1845 1877 4.201724 CGCCAAAGGAGAAGTTCGATTTAG 60.202 45.833 0.00 0.00 0.00 1.85
1846 1878 3.682858 CGCCAAAGGAGAAGTTCGATTTA 59.317 43.478 0.00 0.00 0.00 1.40
1847 1879 2.484264 CGCCAAAGGAGAAGTTCGATTT 59.516 45.455 0.00 0.00 0.00 2.17
1848 1880 2.076863 CGCCAAAGGAGAAGTTCGATT 58.923 47.619 0.00 0.00 0.00 3.34
1849 1881 1.676014 CCGCCAAAGGAGAAGTTCGAT 60.676 52.381 0.00 0.00 0.00 3.59
1850 1882 0.320421 CCGCCAAAGGAGAAGTTCGA 60.320 55.000 0.00 0.00 0.00 3.71
1851 1883 1.912371 GCCGCCAAAGGAGAAGTTCG 61.912 60.000 0.00 0.00 0.00 3.95
1852 1884 0.889186 TGCCGCCAAAGGAGAAGTTC 60.889 55.000 0.00 0.00 0.00 3.01
1853 1885 0.467290 TTGCCGCCAAAGGAGAAGTT 60.467 50.000 0.00 0.00 0.00 2.66
1854 1886 0.890996 CTTGCCGCCAAAGGAGAAGT 60.891 55.000 0.00 0.00 0.00 3.01
1855 1887 1.589716 CCTTGCCGCCAAAGGAGAAG 61.590 60.000 3.83 0.00 0.00 2.85
1856 1888 1.603455 CCTTGCCGCCAAAGGAGAA 60.603 57.895 3.83 0.00 0.00 2.87
1857 1889 2.034066 CCTTGCCGCCAAAGGAGA 59.966 61.111 3.83 0.00 0.00 3.71
1858 1890 3.064324 CCCTTGCCGCCAAAGGAG 61.064 66.667 10.41 0.00 35.00 3.69
1859 1891 2.439553 ATTCCCTTGCCGCCAAAGGA 62.440 55.000 10.41 1.65 39.28 3.36
1860 1892 1.543944 AATTCCCTTGCCGCCAAAGG 61.544 55.000 3.01 3.01 34.46 3.11
1861 1893 1.181786 TAATTCCCTTGCCGCCAAAG 58.818 50.000 0.00 0.00 0.00 2.77
1862 1894 1.633774 TTAATTCCCTTGCCGCCAAA 58.366 45.000 0.00 0.00 0.00 3.28
1863 1895 1.754226 GATTAATTCCCTTGCCGCCAA 59.246 47.619 0.00 0.00 0.00 4.52
1864 1896 1.398692 GATTAATTCCCTTGCCGCCA 58.601 50.000 0.00 0.00 0.00 5.69
1865 1897 0.673985 GGATTAATTCCCTTGCCGCC 59.326 55.000 0.00 0.00 38.75 6.13
1866 1898 1.398692 TGGATTAATTCCCTTGCCGC 58.601 50.000 0.00 0.00 44.77 6.53
1867 1899 3.254166 CAGATGGATTAATTCCCTTGCCG 59.746 47.826 0.00 0.00 44.77 5.69
1868 1900 4.038402 CACAGATGGATTAATTCCCTTGCC 59.962 45.833 0.00 0.00 44.77 4.52
1869 1901 4.889409 TCACAGATGGATTAATTCCCTTGC 59.111 41.667 0.00 0.00 44.77 4.01
1870 1902 5.533903 CCTCACAGATGGATTAATTCCCTTG 59.466 44.000 0.00 0.00 44.77 3.61
1871 1903 5.194537 ACCTCACAGATGGATTAATTCCCTT 59.805 40.000 0.00 0.00 44.77 3.95
1872 1904 4.728860 ACCTCACAGATGGATTAATTCCCT 59.271 41.667 0.00 0.00 44.77 4.20
1873 1905 5.053978 ACCTCACAGATGGATTAATTCCC 57.946 43.478 0.00 0.00 44.77 3.97
1874 1906 8.697507 ATTTACCTCACAGATGGATTAATTCC 57.302 34.615 0.00 0.00 45.69 3.01
1880 1912 9.401058 CTCTTTAATTTACCTCACAGATGGATT 57.599 33.333 0.00 0.00 0.00 3.01
1881 1913 8.552296 ACTCTTTAATTTACCTCACAGATGGAT 58.448 33.333 0.00 0.00 0.00 3.41
1882 1914 7.918076 ACTCTTTAATTTACCTCACAGATGGA 58.082 34.615 0.00 0.00 0.00 3.41
1883 1915 8.454106 CAACTCTTTAATTTACCTCACAGATGG 58.546 37.037 0.00 0.00 0.00 3.51
1884 1916 9.219603 TCAACTCTTTAATTTACCTCACAGATG 57.780 33.333 0.00 0.00 0.00 2.90
1885 1917 9.965902 ATCAACTCTTTAATTTACCTCACAGAT 57.034 29.630 0.00 0.00 0.00 2.90
1886 1918 9.793259 AATCAACTCTTTAATTTACCTCACAGA 57.207 29.630 0.00 0.00 0.00 3.41
1891 1923 9.841880 GGTGAAATCAACTCTTTAATTTACCTC 57.158 33.333 0.00 0.00 0.00 3.85
1892 1924 9.588096 AGGTGAAATCAACTCTTTAATTTACCT 57.412 29.630 0.00 0.00 40.49 3.08
1899 1931 8.635328 GGGTAAAAGGTGAAATCAACTCTTTAA 58.365 33.333 0.66 0.00 44.43 1.52
1900 1932 8.002459 AGGGTAAAAGGTGAAATCAACTCTTTA 58.998 33.333 0.66 6.59 44.43 1.85
1901 1933 6.839134 AGGGTAAAAGGTGAAATCAACTCTTT 59.161 34.615 0.66 7.43 44.43 2.52
1902 1934 6.373759 AGGGTAAAAGGTGAAATCAACTCTT 58.626 36.000 0.66 0.00 44.43 2.85
1903 1935 5.953571 AGGGTAAAAGGTGAAATCAACTCT 58.046 37.500 0.66 0.00 44.43 3.24
1904 1936 6.004574 AGAGGGTAAAAGGTGAAATCAACTC 58.995 40.000 0.66 0.00 44.43 3.01
1906 1938 7.939784 ATAGAGGGTAAAAGGTGAAATCAAC 57.060 36.000 0.00 0.00 0.00 3.18
1907 1939 8.802267 CAAATAGAGGGTAAAAGGTGAAATCAA 58.198 33.333 0.00 0.00 0.00 2.57
1908 1940 7.947890 ACAAATAGAGGGTAAAAGGTGAAATCA 59.052 33.333 0.00 0.00 0.00 2.57
1909 1941 8.244113 CACAAATAGAGGGTAAAAGGTGAAATC 58.756 37.037 0.00 0.00 0.00 2.17
1910 1942 7.728532 ACACAAATAGAGGGTAAAAGGTGAAAT 59.271 33.333 0.00 0.00 0.00 2.17
1911 1943 7.064229 ACACAAATAGAGGGTAAAAGGTGAAA 58.936 34.615 0.00 0.00 0.00 2.69
1912 1944 6.607019 ACACAAATAGAGGGTAAAAGGTGAA 58.393 36.000 0.00 0.00 0.00 3.18
1913 1945 6.183361 TGACACAAATAGAGGGTAAAAGGTGA 60.183 38.462 0.00 0.00 0.00 4.02
1914 1946 6.001460 TGACACAAATAGAGGGTAAAAGGTG 58.999 40.000 0.00 0.00 0.00 4.00
1915 1947 6.195600 TGACACAAATAGAGGGTAAAAGGT 57.804 37.500 0.00 0.00 0.00 3.50
1916 1948 7.230712 ACTTTGACACAAATAGAGGGTAAAAGG 59.769 37.037 9.53 0.00 0.00 3.11
1917 1949 8.166422 ACTTTGACACAAATAGAGGGTAAAAG 57.834 34.615 4.31 4.31 0.00 2.27
1918 1950 7.996644 AGACTTTGACACAAATAGAGGGTAAAA 59.003 33.333 0.00 0.00 0.00 1.52
1919 1951 7.514721 AGACTTTGACACAAATAGAGGGTAAA 58.485 34.615 0.00 0.00 0.00 2.01
1920 1952 7.074653 AGACTTTGACACAAATAGAGGGTAA 57.925 36.000 0.00 0.00 0.00 2.85
1921 1953 6.681729 AGACTTTGACACAAATAGAGGGTA 57.318 37.500 0.00 0.00 0.00 3.69
1922 1954 5.568620 AGACTTTGACACAAATAGAGGGT 57.431 39.130 0.00 0.00 0.00 4.34
1923 1955 6.371825 GGTAAGACTTTGACACAAATAGAGGG 59.628 42.308 0.00 0.00 0.00 4.30
1924 1956 6.090898 CGGTAAGACTTTGACACAAATAGAGG 59.909 42.308 0.00 0.00 0.00 3.69
1925 1957 6.401153 GCGGTAAGACTTTGACACAAATAGAG 60.401 42.308 0.00 0.00 0.00 2.43
1926 1958 5.407387 GCGGTAAGACTTTGACACAAATAGA 59.593 40.000 0.00 0.00 0.00 1.98
1927 1959 5.178623 TGCGGTAAGACTTTGACACAAATAG 59.821 40.000 0.00 0.00 0.00 1.73
1928 1960 5.057819 TGCGGTAAGACTTTGACACAAATA 58.942 37.500 0.00 0.00 0.00 1.40
1929 1961 3.880490 TGCGGTAAGACTTTGACACAAAT 59.120 39.130 0.00 0.00 0.00 2.32
1930 1962 3.271729 TGCGGTAAGACTTTGACACAAA 58.728 40.909 0.00 0.00 0.00 2.83
1931 1963 2.907634 TGCGGTAAGACTTTGACACAA 58.092 42.857 0.00 0.00 0.00 3.33
1932 1964 2.605837 TGCGGTAAGACTTTGACACA 57.394 45.000 0.00 0.00 0.00 3.72
1933 1965 6.040878 AGTATATGCGGTAAGACTTTGACAC 58.959 40.000 0.00 0.00 0.00 3.67
1934 1966 6.216801 AGTATATGCGGTAAGACTTTGACA 57.783 37.500 0.00 0.00 0.00 3.58
1935 1967 5.690857 GGAGTATATGCGGTAAGACTTTGAC 59.309 44.000 0.00 0.00 0.00 3.18
1936 1968 5.221382 GGGAGTATATGCGGTAAGACTTTGA 60.221 44.000 0.00 0.00 0.00 2.69
1937 1969 4.989168 GGGAGTATATGCGGTAAGACTTTG 59.011 45.833 0.00 0.00 0.00 2.77
1938 1970 4.900054 AGGGAGTATATGCGGTAAGACTTT 59.100 41.667 0.00 0.00 0.00 2.66
1939 1971 4.481072 AGGGAGTATATGCGGTAAGACTT 58.519 43.478 0.00 0.00 0.00 3.01
1940 1972 4.080687 GAGGGAGTATATGCGGTAAGACT 58.919 47.826 0.00 0.00 0.00 3.24
1941 1973 3.193056 GGAGGGAGTATATGCGGTAAGAC 59.807 52.174 0.00 0.00 0.00 3.01
1942 1974 3.428532 GGAGGGAGTATATGCGGTAAGA 58.571 50.000 0.00 0.00 0.00 2.10
1943 1975 2.163815 CGGAGGGAGTATATGCGGTAAG 59.836 54.545 0.00 0.00 0.00 2.34
1944 1976 2.165167 CGGAGGGAGTATATGCGGTAA 58.835 52.381 0.00 0.00 0.00 2.85
1945 1977 1.074405 ACGGAGGGAGTATATGCGGTA 59.926 52.381 0.00 0.00 31.55 4.02
1946 1978 0.178970 ACGGAGGGAGTATATGCGGT 60.179 55.000 0.00 0.00 31.55 5.68
1947 1979 0.966920 AACGGAGGGAGTATATGCGG 59.033 55.000 0.00 0.00 31.55 5.69
1948 1980 1.067776 GGAACGGAGGGAGTATATGCG 60.068 57.143 0.00 0.00 0.00 4.73
1949 1981 1.275573 GGGAACGGAGGGAGTATATGC 59.724 57.143 0.00 0.00 0.00 3.14
1950 1982 2.605257 TGGGAACGGAGGGAGTATATG 58.395 52.381 0.00 0.00 0.00 1.78
1951 1983 3.339713 TTGGGAACGGAGGGAGTATAT 57.660 47.619 0.00 0.00 0.00 0.86
1952 1984 2.852714 TTGGGAACGGAGGGAGTATA 57.147 50.000 0.00 0.00 0.00 1.47
1953 1985 1.961133 TTTGGGAACGGAGGGAGTAT 58.039 50.000 0.00 0.00 0.00 2.12
1954 1986 1.961133 ATTTGGGAACGGAGGGAGTA 58.039 50.000 0.00 0.00 0.00 2.59
1955 1987 1.961133 TATTTGGGAACGGAGGGAGT 58.039 50.000 0.00 0.00 0.00 3.85
1956 1988 3.008049 CCTATATTTGGGAACGGAGGGAG 59.992 52.174 0.00 0.00 0.00 4.30
1957 1989 2.976882 CCTATATTTGGGAACGGAGGGA 59.023 50.000 0.00 0.00 0.00 4.20
1958 1990 2.709397 ACCTATATTTGGGAACGGAGGG 59.291 50.000 0.00 0.00 0.00 4.30
1959 1991 3.646637 AGACCTATATTTGGGAACGGAGG 59.353 47.826 0.00 0.00 0.00 4.30
1960 1992 4.957684 AGACCTATATTTGGGAACGGAG 57.042 45.455 0.00 0.00 0.00 4.63
1961 1993 5.703730 AAAGACCTATATTTGGGAACGGA 57.296 39.130 0.00 0.00 0.00 4.69
1962 1994 6.769134 AAAAAGACCTATATTTGGGAACGG 57.231 37.500 0.00 0.00 0.00 4.44
1963 1995 8.726870 TCTAAAAAGACCTATATTTGGGAACG 57.273 34.615 0.00 0.00 0.00 3.95
1990 2022 9.410556 GCTTTGTATGTAGTCATTTGTTGAAAT 57.589 29.630 0.00 0.00 35.70 2.17
1991 2023 8.409371 TGCTTTGTATGTAGTCATTTGTTGAAA 58.591 29.630 0.00 0.00 35.70 2.69
1992 2024 7.935520 TGCTTTGTATGTAGTCATTTGTTGAA 58.064 30.769 0.00 0.00 35.70 2.69
1993 2025 7.503521 TGCTTTGTATGTAGTCATTTGTTGA 57.496 32.000 0.00 0.00 35.70 3.18
1994 2026 8.572828 TTTGCTTTGTATGTAGTCATTTGTTG 57.427 30.769 0.00 0.00 35.70 3.33
1995 2027 8.413229 ACTTTGCTTTGTATGTAGTCATTTGTT 58.587 29.630 0.00 0.00 35.70 2.83
1996 2028 7.862372 CACTTTGCTTTGTATGTAGTCATTTGT 59.138 33.333 0.00 0.00 35.70 2.83
1997 2029 8.075574 TCACTTTGCTTTGTATGTAGTCATTTG 58.924 33.333 0.00 0.00 35.70 2.32
1998 2030 8.165239 TCACTTTGCTTTGTATGTAGTCATTT 57.835 30.769 0.00 0.00 35.70 2.32
1999 2031 7.445402 ACTCACTTTGCTTTGTATGTAGTCATT 59.555 33.333 0.00 0.00 35.70 2.57
2000 2032 6.936900 ACTCACTTTGCTTTGTATGTAGTCAT 59.063 34.615 0.00 0.00 38.00 3.06
2001 2033 6.202762 CACTCACTTTGCTTTGTATGTAGTCA 59.797 38.462 0.00 0.00 0.00 3.41
2002 2034 6.423905 TCACTCACTTTGCTTTGTATGTAGTC 59.576 38.462 0.00 0.00 0.00 2.59
2003 2035 6.288294 TCACTCACTTTGCTTTGTATGTAGT 58.712 36.000 0.00 0.00 0.00 2.73
2004 2036 6.785488 TCACTCACTTTGCTTTGTATGTAG 57.215 37.500 0.00 0.00 0.00 2.74
2005 2037 7.661437 AGATTCACTCACTTTGCTTTGTATGTA 59.339 33.333 0.00 0.00 0.00 2.29
2006 2038 6.488006 AGATTCACTCACTTTGCTTTGTATGT 59.512 34.615 0.00 0.00 0.00 2.29
2007 2039 6.906659 AGATTCACTCACTTTGCTTTGTATG 58.093 36.000 0.00 0.00 0.00 2.39
2008 2040 7.661437 TGTAGATTCACTCACTTTGCTTTGTAT 59.339 33.333 0.00 0.00 0.00 2.29
2009 2041 6.989759 TGTAGATTCACTCACTTTGCTTTGTA 59.010 34.615 0.00 0.00 0.00 2.41
2010 2042 5.822519 TGTAGATTCACTCACTTTGCTTTGT 59.177 36.000 0.00 0.00 0.00 2.83
2011 2043 6.017605 AGTGTAGATTCACTCACTTTGCTTTG 60.018 38.462 0.00 0.00 44.07 2.77
2012 2044 6.058183 AGTGTAGATTCACTCACTTTGCTTT 58.942 36.000 0.00 0.00 44.07 3.51
2013 2045 5.615289 AGTGTAGATTCACTCACTTTGCTT 58.385 37.500 0.00 0.00 44.07 3.91
2014 2046 5.220710 AGTGTAGATTCACTCACTTTGCT 57.779 39.130 0.00 0.00 44.07 3.91
2052 2084 6.964807 TTGGACTACACCATACGTATGTAT 57.035 37.500 28.80 16.89 42.03 2.29
2053 2085 6.964807 ATTGGACTACACCATACGTATGTA 57.035 37.500 28.80 17.95 39.82 2.29
2054 2086 5.864418 ATTGGACTACACCATACGTATGT 57.136 39.130 28.80 17.79 39.82 2.29
2055 2087 6.277605 TCAATTGGACTACACCATACGTATG 58.722 40.000 25.55 25.55 39.82 2.39
2056 2088 6.474140 TCAATTGGACTACACCATACGTAT 57.526 37.500 5.42 1.14 39.82 3.06
2057 2089 5.918426 TCAATTGGACTACACCATACGTA 57.082 39.130 5.42 0.00 39.82 3.57
2058 2090 4.811969 TCAATTGGACTACACCATACGT 57.188 40.909 5.42 0.00 39.82 3.57
2059 2091 6.093495 ACATTTCAATTGGACTACACCATACG 59.907 38.462 5.42 0.00 39.82 3.06
2060 2092 7.391148 ACATTTCAATTGGACTACACCATAC 57.609 36.000 5.42 0.00 39.82 2.39
2061 2093 7.667635 TGAACATTTCAATTGGACTACACCATA 59.332 33.333 5.42 0.00 36.93 2.74
2062 2094 6.493115 TGAACATTTCAATTGGACTACACCAT 59.507 34.615 5.42 0.00 36.93 3.55
2063 2095 5.830457 TGAACATTTCAATTGGACTACACCA 59.170 36.000 5.42 0.00 36.59 4.17
2064 2096 6.325919 TGAACATTTCAATTGGACTACACC 57.674 37.500 5.42 0.00 36.59 4.16
2088 2120 9.392259 CCCTTCGTTCCTAAATATAAGTCTTTT 57.608 33.333 0.00 0.00 0.00 2.27
2089 2121 8.765517 TCCCTTCGTTCCTAAATATAAGTCTTT 58.234 33.333 0.00 0.00 0.00 2.52
2090 2122 8.315220 TCCCTTCGTTCCTAAATATAAGTCTT 57.685 34.615 0.00 0.00 0.00 3.01
2091 2123 7.564292 ACTCCCTTCGTTCCTAAATATAAGTCT 59.436 37.037 0.00 0.00 0.00 3.24
2092 2124 7.724287 ACTCCCTTCGTTCCTAAATATAAGTC 58.276 38.462 0.00 0.00 0.00 3.01
2093 2125 7.672122 ACTCCCTTCGTTCCTAAATATAAGT 57.328 36.000 0.00 0.00 0.00 2.24
2099 2131 9.916360 AAAATAATACTCCCTTCGTTCCTAAAT 57.084 29.630 0.00 0.00 0.00 1.40
2100 2132 9.743581 AAAAATAATACTCCCTTCGTTCCTAAA 57.256 29.630 0.00 0.00 0.00 1.85
2101 2133 9.387257 GAAAAATAATACTCCCTTCGTTCCTAA 57.613 33.333 0.00 0.00 0.00 2.69
2102 2134 8.765517 AGAAAAATAATACTCCCTTCGTTCCTA 58.234 33.333 0.00 0.00 0.00 2.94
2103 2135 7.631007 AGAAAAATAATACTCCCTTCGTTCCT 58.369 34.615 0.00 0.00 0.00 3.36
2104 2136 7.769507 AGAGAAAAATAATACTCCCTTCGTTCC 59.230 37.037 0.00 0.00 0.00 3.62
2105 2137 8.604890 CAGAGAAAAATAATACTCCCTTCGTTC 58.395 37.037 0.00 0.00 0.00 3.95
2106 2138 8.319146 TCAGAGAAAAATAATACTCCCTTCGTT 58.681 33.333 0.00 0.00 0.00 3.85
2107 2139 7.848128 TCAGAGAAAAATAATACTCCCTTCGT 58.152 34.615 0.00 0.00 0.00 3.85
2108 2140 8.894768 ATCAGAGAAAAATAATACTCCCTTCG 57.105 34.615 0.00 0.00 0.00 3.79
2121 2153 8.564574 TGTAGTACGCAAAAATCAGAGAAAAAT 58.435 29.630 0.00 0.00 0.00 1.82
2122 2154 7.921787 TGTAGTACGCAAAAATCAGAGAAAAA 58.078 30.769 0.00 0.00 0.00 1.94
2123 2155 7.485418 TGTAGTACGCAAAAATCAGAGAAAA 57.515 32.000 0.00 0.00 0.00 2.29
2124 2156 7.518161 CATGTAGTACGCAAAAATCAGAGAAA 58.482 34.615 0.00 0.00 0.00 2.52
2125 2157 6.402118 GCATGTAGTACGCAAAAATCAGAGAA 60.402 38.462 0.00 0.00 0.00 2.87
2126 2158 5.063438 GCATGTAGTACGCAAAAATCAGAGA 59.937 40.000 0.00 0.00 0.00 3.10
2127 2159 5.163864 TGCATGTAGTACGCAAAAATCAGAG 60.164 40.000 0.90 0.00 31.46 3.35
2128 2160 4.693095 TGCATGTAGTACGCAAAAATCAGA 59.307 37.500 0.90 0.00 31.46 3.27
2129 2161 4.968626 TGCATGTAGTACGCAAAAATCAG 58.031 39.130 0.90 0.00 31.46 2.90
2130 2162 5.559427 ATGCATGTAGTACGCAAAAATCA 57.441 34.783 0.00 0.00 39.48 2.57
2133 2165 9.262358 TGTATATATGCATGTAGTACGCAAAAA 57.738 29.630 10.16 0.00 39.48 1.94
2134 2166 8.819643 TGTATATATGCATGTAGTACGCAAAA 57.180 30.769 10.16 0.56 39.48 2.44
2135 2167 8.819643 TTGTATATATGCATGTAGTACGCAAA 57.180 30.769 10.16 1.35 39.48 3.68
2136 2168 7.544217 CCTTGTATATATGCATGTAGTACGCAA 59.456 37.037 10.16 8.20 39.48 4.85
2137 2169 7.033185 CCTTGTATATATGCATGTAGTACGCA 58.967 38.462 10.16 5.49 40.50 5.24
2138 2170 7.255569 TCCTTGTATATATGCATGTAGTACGC 58.744 38.462 10.16 0.00 0.00 4.42
2139 2171 9.803315 ATTCCTTGTATATATGCATGTAGTACG 57.197 33.333 10.16 0.00 0.00 3.67
2192 2224 9.840427 GTGTTAATACTTGCTCATTGTTTATGT 57.160 29.630 0.00 0.00 35.64 2.29
2198 2230 8.184192 GCATAAGTGTTAATACTTGCTCATTGT 58.816 33.333 23.36 1.11 40.85 2.71
2199 2231 8.183536 TGCATAAGTGTTAATACTTGCTCATTG 58.816 33.333 23.36 13.30 40.85 2.82
2200 2232 8.184192 GTGCATAAGTGTTAATACTTGCTCATT 58.816 33.333 23.36 2.42 40.85 2.57
2201 2233 7.554118 AGTGCATAAGTGTTAATACTTGCTCAT 59.446 33.333 23.36 9.38 40.85 2.90
2202 2234 6.878923 AGTGCATAAGTGTTAATACTTGCTCA 59.121 34.615 23.36 15.53 40.85 4.26
2203 2235 7.308782 AGTGCATAAGTGTTAATACTTGCTC 57.691 36.000 23.36 19.69 40.85 4.26
2204 2236 7.390440 TCAAGTGCATAAGTGTTAATACTTGCT 59.610 33.333 23.36 10.80 41.91 3.91
2205 2237 7.526608 TCAAGTGCATAAGTGTTAATACTTGC 58.473 34.615 23.36 20.22 41.91 4.01
2206 2238 9.546909 CTTCAAGTGCATAAGTGTTAATACTTG 57.453 33.333 23.36 12.37 42.92 3.16
2207 2239 8.237267 GCTTCAAGTGCATAAGTGTTAATACTT 58.763 33.333 19.72 19.72 43.03 2.24
2208 2240 7.390440 TGCTTCAAGTGCATAAGTGTTAATACT 59.610 33.333 0.00 0.00 35.31 2.12
2209 2241 7.481798 GTGCTTCAAGTGCATAAGTGTTAATAC 59.518 37.037 0.00 0.00 42.69 1.89
2210 2242 7.174080 TGTGCTTCAAGTGCATAAGTGTTAATA 59.826 33.333 0.00 0.00 42.69 0.98
2211 2243 6.016360 TGTGCTTCAAGTGCATAAGTGTTAAT 60.016 34.615 0.00 0.00 42.69 1.40
2212 2244 5.298026 TGTGCTTCAAGTGCATAAGTGTTAA 59.702 36.000 0.00 0.00 42.69 2.01
2213 2245 4.819088 TGTGCTTCAAGTGCATAAGTGTTA 59.181 37.500 0.00 0.00 42.69 2.41
2214 2246 3.631686 TGTGCTTCAAGTGCATAAGTGTT 59.368 39.130 0.00 0.00 42.69 3.32
2215 2247 3.003689 GTGTGCTTCAAGTGCATAAGTGT 59.996 43.478 0.00 0.00 42.69 3.55
2216 2248 3.003585 TGTGTGCTTCAAGTGCATAAGTG 59.996 43.478 0.00 0.00 42.69 3.16
2217 2249 3.213506 TGTGTGCTTCAAGTGCATAAGT 58.786 40.909 0.00 0.00 42.69 2.24
2218 2250 3.902261 TGTGTGCTTCAAGTGCATAAG 57.098 42.857 0.00 0.00 42.69 1.73
2219 2251 5.956068 TTATGTGTGCTTCAAGTGCATAA 57.044 34.783 0.00 0.00 42.69 1.90
2220 2252 5.619757 GCTTTATGTGTGCTTCAAGTGCATA 60.620 40.000 0.00 0.00 42.69 3.14
2221 2253 4.801891 CTTTATGTGTGCTTCAAGTGCAT 58.198 39.130 0.00 0.00 42.69 3.96
2222 2254 3.550639 GCTTTATGTGTGCTTCAAGTGCA 60.551 43.478 0.00 0.00 38.19 4.57
2223 2255 2.982470 GCTTTATGTGTGCTTCAAGTGC 59.018 45.455 0.00 0.00 0.00 4.40
2224 2256 3.976942 GTGCTTTATGTGTGCTTCAAGTG 59.023 43.478 0.00 0.00 0.00 3.16
2225 2257 3.885297 AGTGCTTTATGTGTGCTTCAAGT 59.115 39.130 0.00 0.00 0.00 3.16
2226 2258 4.494350 AGTGCTTTATGTGTGCTTCAAG 57.506 40.909 0.00 0.00 0.00 3.02
2227 2259 7.148255 CCTTATAGTGCTTTATGTGTGCTTCAA 60.148 37.037 0.00 0.00 0.00 2.69
2228 2260 6.316140 CCTTATAGTGCTTTATGTGTGCTTCA 59.684 38.462 0.00 0.00 0.00 3.02
2229 2261 6.316390 ACCTTATAGTGCTTTATGTGTGCTTC 59.684 38.462 0.00 0.00 0.00 3.86
2230 2262 6.094048 CACCTTATAGTGCTTTATGTGTGCTT 59.906 38.462 0.00 0.00 0.00 3.91
2231 2263 5.586243 CACCTTATAGTGCTTTATGTGTGCT 59.414 40.000 0.00 0.00 0.00 4.40
2232 2264 5.810525 CACCTTATAGTGCTTTATGTGTGC 58.189 41.667 0.00 0.00 0.00 4.57
2244 2276 8.165239 TGGCATATTTTTAGCACCTTATAGTG 57.835 34.615 0.00 0.00 40.88 2.74
2245 2277 8.760980 TTGGCATATTTTTAGCACCTTATAGT 57.239 30.769 0.00 0.00 0.00 2.12
2250 2282 9.161629 GTTTATTTGGCATATTTTTAGCACCTT 57.838 29.630 0.00 0.00 0.00 3.50
2251 2283 7.768582 GGTTTATTTGGCATATTTTTAGCACCT 59.231 33.333 0.00 0.00 0.00 4.00
2252 2284 7.550906 TGGTTTATTTGGCATATTTTTAGCACC 59.449 33.333 0.00 0.00 0.00 5.01
2253 2285 8.387354 GTGGTTTATTTGGCATATTTTTAGCAC 58.613 33.333 0.00 2.81 0.00 4.40
2254 2286 8.317679 AGTGGTTTATTTGGCATATTTTTAGCA 58.682 29.630 0.00 0.00 0.00 3.49
2255 2287 8.716646 AGTGGTTTATTTGGCATATTTTTAGC 57.283 30.769 0.00 0.00 0.00 3.09
2258 2290 9.869757 GACTAGTGGTTTATTTGGCATATTTTT 57.130 29.630 0.00 0.00 0.00 1.94
2259 2291 9.255029 AGACTAGTGGTTTATTTGGCATATTTT 57.745 29.630 0.00 0.00 0.00 1.82
2260 2292 8.823220 AGACTAGTGGTTTATTTGGCATATTT 57.177 30.769 0.00 0.00 0.00 1.40
2261 2293 8.823220 AAGACTAGTGGTTTATTTGGCATATT 57.177 30.769 0.00 0.00 0.00 1.28
2262 2294 8.052748 TGAAGACTAGTGGTTTATTTGGCATAT 58.947 33.333 0.00 0.00 0.00 1.78
2263 2295 7.398829 TGAAGACTAGTGGTTTATTTGGCATA 58.601 34.615 0.00 0.00 0.00 3.14
2264 2296 6.245408 TGAAGACTAGTGGTTTATTTGGCAT 58.755 36.000 0.00 0.00 0.00 4.40
2265 2297 5.626142 TGAAGACTAGTGGTTTATTTGGCA 58.374 37.500 0.00 0.00 0.00 4.92
2266 2298 6.759497 ATGAAGACTAGTGGTTTATTTGGC 57.241 37.500 0.00 0.00 0.00 4.52
2267 2299 9.396022 ACATATGAAGACTAGTGGTTTATTTGG 57.604 33.333 10.38 0.00 0.00 3.28
2271 2303 9.201989 TGAGACATATGAAGACTAGTGGTTTAT 57.798 33.333 10.38 0.00 0.00 1.40
2272 2304 8.589701 TGAGACATATGAAGACTAGTGGTTTA 57.410 34.615 10.38 0.00 0.00 2.01
2273 2305 7.482169 TGAGACATATGAAGACTAGTGGTTT 57.518 36.000 10.38 0.00 0.00 3.27
2274 2306 7.563188 AGATGAGACATATGAAGACTAGTGGTT 59.437 37.037 10.38 0.00 0.00 3.67
2275 2307 7.066142 AGATGAGACATATGAAGACTAGTGGT 58.934 38.462 10.38 0.00 0.00 4.16
2276 2308 7.230309 TGAGATGAGACATATGAAGACTAGTGG 59.770 40.741 10.38 0.00 0.00 4.00
2277 2309 8.164058 TGAGATGAGACATATGAAGACTAGTG 57.836 38.462 10.38 0.00 0.00 2.74
2278 2310 8.938801 ATGAGATGAGACATATGAAGACTAGT 57.061 34.615 10.38 0.00 0.00 2.57
2281 2313 8.306038 GCTTATGAGATGAGACATATGAAGACT 58.694 37.037 10.38 3.18 0.00 3.24
2282 2314 8.087136 TGCTTATGAGATGAGACATATGAAGAC 58.913 37.037 10.38 0.00 0.00 3.01
2283 2315 8.186709 TGCTTATGAGATGAGACATATGAAGA 57.813 34.615 10.38 0.00 0.00 2.87
2284 2316 8.828688 TTGCTTATGAGATGAGACATATGAAG 57.171 34.615 10.38 0.00 0.00 3.02
2285 2317 9.269453 CTTTGCTTATGAGATGAGACATATGAA 57.731 33.333 10.38 0.00 0.00 2.57
2286 2318 8.645110 TCTTTGCTTATGAGATGAGACATATGA 58.355 33.333 10.38 0.00 0.00 2.15
2287 2319 8.828688 TCTTTGCTTATGAGATGAGACATATG 57.171 34.615 0.00 0.00 0.00 1.78
2290 2322 7.603404 GCTATCTTTGCTTATGAGATGAGACAT 59.397 37.037 0.00 0.00 32.68 3.06
2291 2323 6.927936 GCTATCTTTGCTTATGAGATGAGACA 59.072 38.462 0.00 0.00 32.68 3.41
2292 2324 6.927936 TGCTATCTTTGCTTATGAGATGAGAC 59.072 38.462 0.00 0.00 32.68 3.36
2293 2325 7.059202 TGCTATCTTTGCTTATGAGATGAGA 57.941 36.000 0.00 0.00 32.68 3.27
2294 2326 7.064847 GGATGCTATCTTTGCTTATGAGATGAG 59.935 40.741 0.00 0.00 32.68 2.90
2295 2327 6.877855 GGATGCTATCTTTGCTTATGAGATGA 59.122 38.462 0.00 0.00 32.68 2.92
2296 2328 6.653740 TGGATGCTATCTTTGCTTATGAGATG 59.346 38.462 0.00 0.00 32.68 2.90
2297 2329 6.654161 GTGGATGCTATCTTTGCTTATGAGAT 59.346 38.462 0.00 0.00 34.67 2.75
2298 2330 5.994054 GTGGATGCTATCTTTGCTTATGAGA 59.006 40.000 0.00 0.00 0.00 3.27
2299 2331 5.761726 TGTGGATGCTATCTTTGCTTATGAG 59.238 40.000 0.00 0.00 0.00 2.90
2300 2332 5.683681 TGTGGATGCTATCTTTGCTTATGA 58.316 37.500 0.00 0.00 0.00 2.15
2301 2333 6.570672 ATGTGGATGCTATCTTTGCTTATG 57.429 37.500 0.00 0.00 0.00 1.90
2302 2334 8.737175 CAATATGTGGATGCTATCTTTGCTTAT 58.263 33.333 0.00 0.00 0.00 1.73
2303 2335 7.308770 GCAATATGTGGATGCTATCTTTGCTTA 60.309 37.037 0.00 0.00 37.12 3.09
2304 2336 6.516194 GCAATATGTGGATGCTATCTTTGCTT 60.516 38.462 0.00 0.00 37.12 3.91
2305 2337 5.048224 GCAATATGTGGATGCTATCTTTGCT 60.048 40.000 0.00 0.00 37.12 3.91
2306 2338 5.159209 GCAATATGTGGATGCTATCTTTGC 58.841 41.667 0.00 0.00 37.12 3.68
2315 2347 8.553459 AGTATTAACTAGCAATATGTGGATGC 57.447 34.615 0.00 0.00 40.34 3.91


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.