Multiple sequence alignment - TraesCS6B01G015300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G015300 chr6B 100.000 3720 0 0 1 3720 9078386 9082105 0.000000e+00 6870.0
1 TraesCS6B01G015300 chr6B 83.735 664 78 19 1960 2607 9059332 9059981 5.320000e-168 601.0
2 TraesCS6B01G015300 chr6B 84.000 575 65 16 1967 2538 9035574 9036124 9.150000e-146 527.0
3 TraesCS6B01G015300 chr6B 88.038 418 41 6 1486 1898 9058810 9059223 1.550000e-133 486.0
4 TraesCS6B01G015300 chr6B 85.339 457 45 13 1453 1898 9035015 9035460 1.580000e-123 453.0
5 TraesCS6B01G015300 chr6A 86.782 1967 160 39 1163 3098 3747802 3745905 0.000000e+00 2100.0
6 TraesCS6B01G015300 chr6A 85.249 583 68 10 1960 2538 3772975 3772407 5.350000e-163 584.0
7 TraesCS6B01G015300 chr6A 88.743 382 34 5 1521 1898 3773460 3773084 3.390000e-125 459.0
8 TraesCS6B01G015300 chr6A 82.875 473 48 9 3103 3545 3745864 3745395 9.680000e-106 394.0
9 TraesCS6B01G015300 chr6A 91.985 262 12 4 883 1144 3748133 3747881 3.530000e-95 359.0
10 TraesCS6B01G015300 chr6D 86.400 1875 161 40 1255 3098 3739364 3741175 0.000000e+00 1964.0
11 TraesCS6B01G015300 chr6D 91.272 928 57 12 1634 2551 3726651 3727564 0.000000e+00 1243.0
12 TraesCS6B01G015300 chr6D 83.442 924 100 36 1978 2863 3763844 3764752 0.000000e+00 809.0
13 TraesCS6B01G015300 chr6D 82.436 854 117 22 8 836 3737414 3738259 0.000000e+00 715.0
14 TraesCS6B01G015300 chr6D 83.837 662 75 17 1960 2605 4721473 4720828 5.320000e-168 601.0
15 TraesCS6B01G015300 chr6D 82.931 580 71 18 3 555 3724177 3724755 7.170000e-137 497.0
16 TraesCS6B01G015300 chr6D 87.619 420 43 5 1483 1898 4721996 4721582 2.600000e-131 479.0
17 TraesCS6B01G015300 chr6D 83.851 483 51 15 883 1351 3725955 3726424 5.710000e-118 435.0
18 TraesCS6B01G015300 chr6D 83.550 462 41 13 3097 3525 3741210 3741669 2.080000e-107 399.0
19 TraesCS6B01G015300 chr6D 85.287 401 39 12 1486 1880 3713560 3713946 2.690000e-106 396.0
20 TraesCS6B01G015300 chr6D 82.995 394 55 8 1959 2349 3714088 3714472 2.750000e-91 346.0
21 TraesCS6B01G015300 chr6D 90.076 262 17 4 883 1144 3739010 3739262 7.700000e-87 331.0
22 TraesCS6B01G015300 chr6D 80.952 252 35 8 590 841 3725168 3725406 1.760000e-43 187.0
23 TraesCS6B01G015300 chr6D 75.194 387 64 13 3203 3579 3765064 3765428 1.790000e-33 154.0
24 TraesCS6B01G015300 chr6D 91.892 111 6 2 1505 1614 3726486 3726594 6.430000e-33 152.0
25 TraesCS6B01G015300 chr6D 93.056 72 1 3 2911 2981 3764746 3764814 6.570000e-18 102.0
26 TraesCS6B01G015300 chr6D 100.000 48 0 0 1163 1210 3726274 3726321 5.120000e-14 89.8
27 TraesCS6B01G015300 chr1B 81.368 585 72 29 1972 2544 51106506 51107065 3.410000e-120 442.0
28 TraesCS6B01G015300 chr1B 82.114 369 49 14 1509 1871 51106147 51106504 2.170000e-77 300.0
29 TraesCS6B01G015300 chr1B 87.963 108 13 0 2430 2537 51140970 51141077 1.080000e-25 128.0
30 TraesCS6B01G015300 chrUn 85.075 402 39 11 1486 1880 306428772 306429159 1.250000e-104 390.0
31 TraesCS6B01G015300 chrUn 83.503 394 53 8 1959 2349 306429302 306429686 1.270000e-94 357.0
32 TraesCS6B01G015300 chr1D 79.074 583 84 29 1972 2544 33639646 33640200 2.110000e-97 366.0
33 TraesCS6B01G015300 chr1D 92.500 40 3 0 3347 3386 363584112 363584151 1.440000e-04 58.4
34 TraesCS6B01G015300 chr1A 82.011 378 45 19 1509 1871 32260825 32261194 2.170000e-77 300.0
35 TraesCS6B01G015300 chr7B 81.452 124 14 7 3346 3465 692348975 692348857 3.960000e-15 93.5
36 TraesCS6B01G015300 chr7B 100.000 28 0 0 3351 3378 138130152 138130179 7.000000e-03 52.8
37 TraesCS6B01G015300 chr5B 92.857 42 3 0 3345 3386 550195938 550195979 1.120000e-05 62.1
38 TraesCS6B01G015300 chr5B 100.000 29 0 0 3348 3376 72085990 72086018 2.000000e-03 54.7
39 TraesCS6B01G015300 chr5B 100.000 28 0 0 3071 3098 256584725 256584698 7.000000e-03 52.8
40 TraesCS6B01G015300 chr5B 100.000 28 0 0 3071 3098 563360436 563360409 7.000000e-03 52.8
41 TraesCS6B01G015300 chr5A 87.037 54 6 1 3347 3399 569465511 569465564 4.010000e-05 60.2
42 TraesCS6B01G015300 chr7D 100.000 28 0 0 3071 3098 16909723 16909696 7.000000e-03 52.8
43 TraesCS6B01G015300 chr7A 96.875 32 0 1 3344 3374 594703161 594703130 7.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G015300 chr6B 9078386 9082105 3719 False 6870.000000 6870 100.000000 1 3720 1 chr6B.!!$F1 3719
1 TraesCS6B01G015300 chr6B 9058810 9059981 1171 False 543.500000 601 85.886500 1486 2607 2 chr6B.!!$F3 1121
2 TraesCS6B01G015300 chr6B 9035015 9036124 1109 False 490.000000 527 84.669500 1453 2538 2 chr6B.!!$F2 1085
3 TraesCS6B01G015300 chr6A 3745395 3748133 2738 True 951.000000 2100 87.214000 883 3545 3 chr6A.!!$R1 2662
4 TraesCS6B01G015300 chr6A 3772407 3773460 1053 True 521.500000 584 86.996000 1521 2538 2 chr6A.!!$R2 1017
5 TraesCS6B01G015300 chr6D 3737414 3741669 4255 False 852.250000 1964 85.615500 8 3525 4 chr6D.!!$F3 3517
6 TraesCS6B01G015300 chr6D 4720828 4721996 1168 True 540.000000 601 85.728000 1483 2605 2 chr6D.!!$R1 1122
7 TraesCS6B01G015300 chr6D 3724177 3727564 3387 False 433.966667 1243 88.483000 3 2551 6 chr6D.!!$F2 2548
8 TraesCS6B01G015300 chr6D 3713560 3714472 912 False 371.000000 396 84.141000 1486 2349 2 chr6D.!!$F1 863
9 TraesCS6B01G015300 chr6D 3763844 3765428 1584 False 355.000000 809 83.897333 1978 3579 3 chr6D.!!$F4 1601
10 TraesCS6B01G015300 chr1B 51106147 51107065 918 False 371.000000 442 81.741000 1509 2544 2 chr1B.!!$F2 1035
11 TraesCS6B01G015300 chrUn 306428772 306429686 914 False 373.500000 390 84.289000 1486 2349 2 chrUn.!!$F1 863
12 TraesCS6B01G015300 chr1D 33639646 33640200 554 False 366.000000 366 79.074000 1972 2544 1 chr1D.!!$F1 572

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
880 1924 0.110486 ACCCATCTCGTTTGCCACTT 59.890 50.0 0.00 0.0 0.0 3.16 F
1070 2208 0.179065 GGTATACCGTTGCCCACCTC 60.179 60.0 6.06 0.0 0.0 3.85 F
1283 2482 0.255033 AAGGCCCCTCGATGTTTACC 59.745 55.0 0.00 0.0 0.0 2.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2427 3846 0.459585 GTTGGGAAGCTGCATGCATG 60.460 55.0 22.97 22.7 45.94 4.06 R
2634 4066 0.517316 GCCACAAGACACGATGTTCC 59.483 55.0 0.00 0.0 0.00 3.62 R
3270 4798 0.041090 AAGGCCCATTCCATTTCGGT 59.959 50.0 0.00 0.0 35.57 4.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 9.874215 CTGATGTTTGCAAGTTATACATGATAG 57.126 33.333 16.36 9.25 30.14 2.08
76 81 6.750660 AGACTTGGATCTCATCTGATGATT 57.249 37.500 19.84 11.16 38.85 2.57
129 135 4.528920 AGTTAACCAACACTTACAAGGCA 58.471 39.130 0.88 0.00 37.10 4.75
139 145 6.560253 ACACTTACAAGGCAATTCTTACAG 57.440 37.500 0.00 0.00 0.00 2.74
142 148 7.284489 ACACTTACAAGGCAATTCTTACAGAAA 59.716 33.333 0.00 0.00 37.82 2.52
159 165 9.755064 CTTACAGAAAATAAGAAATACACACCG 57.245 33.333 0.00 0.00 32.31 4.94
160 166 6.608610 ACAGAAAATAAGAAATACACACCGC 58.391 36.000 0.00 0.00 0.00 5.68
189 197 4.528206 GGGGAAATTGACAATGTCTTCCTT 59.472 41.667 23.37 10.17 35.83 3.36
206 214 3.023832 TCCTTATGCACTCGATGACAGA 58.976 45.455 0.00 0.00 0.00 3.41
208 216 3.553511 CCTTATGCACTCGATGACAGAAC 59.446 47.826 0.00 0.00 0.00 3.01
209 217 1.633561 ATGCACTCGATGACAGAACG 58.366 50.000 0.00 0.00 0.00 3.95
267 276 1.193323 ACACCATCAGAGCCAGAGAG 58.807 55.000 0.00 0.00 0.00 3.20
273 282 3.493002 CCATCAGAGCCAGAGAGACATTC 60.493 52.174 0.00 0.00 0.00 2.67
278 287 4.032310 AGAGCCAGAGAGACATTCTTCAT 58.968 43.478 0.00 0.00 35.87 2.57
279 288 4.121317 GAGCCAGAGAGACATTCTTCATG 58.879 47.826 0.00 0.00 35.87 3.07
283 292 4.382793 CCAGAGAGACATTCTTCATGCAGA 60.383 45.833 0.00 0.00 35.87 4.26
291 300 1.203441 TCTTCATGCAGAGCCTGGGT 61.203 55.000 0.00 0.00 31.21 4.51
297 306 3.314331 CAGAGCCTGGGTGGTCGT 61.314 66.667 1.59 0.00 38.35 4.34
306 315 2.264794 GGTGGTCGTCGCTTGGAT 59.735 61.111 0.00 0.00 0.00 3.41
308 317 1.359459 GGTGGTCGTCGCTTGGATTC 61.359 60.000 0.00 0.00 0.00 2.52
321 330 3.058639 GCTTGGATTCAGAATATGACGGC 60.059 47.826 0.00 0.00 37.77 5.68
333 342 4.783764 ATATGACGGCGACAATGATCTA 57.216 40.909 16.62 1.81 0.00 1.98
352 361 6.155221 TGATCTAGCAAATAGAACACTGTCCT 59.845 38.462 0.00 0.00 43.75 3.85
356 382 6.360370 AGCAAATAGAACACTGTCCTAGAA 57.640 37.500 0.00 0.00 0.00 2.10
357 383 6.769512 AGCAAATAGAACACTGTCCTAGAAA 58.230 36.000 0.00 0.00 0.00 2.52
370 396 1.560923 CTAGAAATGGACGAGCACCG 58.439 55.000 0.00 0.00 45.44 4.94
372 398 1.741770 GAAATGGACGAGCACCGCT 60.742 57.895 0.00 0.00 43.88 5.52
393 419 4.746089 GCTGATCTGGCCAGACATATCTTT 60.746 45.833 37.39 19.33 40.75 2.52
419 445 5.440610 GGAAATGTACTGACAAGATCCCAT 58.559 41.667 0.00 0.00 39.59 4.00
428 454 3.779738 TGACAAGATCCCATATGACACCA 59.220 43.478 3.65 0.00 0.00 4.17
449 475 1.814169 GTTGGCGGAATCGGAGACC 60.814 63.158 0.00 0.00 42.51 3.85
480 507 1.116308 TCAAGTCACCAAGGACGTCA 58.884 50.000 18.91 0.00 42.62 4.35
481 508 1.068588 TCAAGTCACCAAGGACGTCAG 59.931 52.381 18.91 6.40 42.62 3.51
488 515 0.321564 CCAAGGACGTCAGCCATTCA 60.322 55.000 18.91 0.00 0.00 2.57
491 518 1.078848 GGACGTCAGCCATTCAGCT 60.079 57.895 18.91 0.00 46.45 4.24
505 532 2.154854 TCAGCTGAAAGACACCTTCG 57.845 50.000 15.67 0.00 34.07 3.79
517 544 2.484264 GACACCTTCGAAGACCAAATGG 59.516 50.000 26.61 10.38 42.17 3.16
521 548 2.684881 CCTTCGAAGACCAAATGGATGG 59.315 50.000 26.61 1.62 46.38 3.51
525 552 2.450476 GAAGACCAAATGGATGGCACT 58.550 47.619 6.42 0.00 44.75 4.40
533 560 4.012374 CAAATGGATGGCACTAAGACACT 58.988 43.478 0.00 0.00 38.79 3.55
544 571 4.100189 GCACTAAGACACTACCAGATCCAT 59.900 45.833 0.00 0.00 0.00 3.41
546 573 5.360999 CACTAAGACACTACCAGATCCATCA 59.639 44.000 0.00 0.00 0.00 3.07
561 588 2.851821 TCCATCAATCAAGATGACCCCA 59.148 45.455 5.57 0.00 46.51 4.96
562 589 2.954318 CCATCAATCAAGATGACCCCAC 59.046 50.000 5.57 0.00 46.51 4.61
563 590 3.623703 CATCAATCAAGATGACCCCACA 58.376 45.455 0.00 0.00 46.51 4.17
564 591 4.212716 CATCAATCAAGATGACCCCACAT 58.787 43.478 0.00 0.00 46.51 3.21
567 594 0.918983 TCAAGATGACCCCACATCCC 59.081 55.000 0.00 0.00 45.20 3.85
569 596 1.289244 AAGATGACCCCACATCCCCC 61.289 60.000 0.00 0.00 45.20 5.40
570 597 1.697754 GATGACCCCACATCCCCCT 60.698 63.158 0.00 0.00 40.24 4.79
573 600 1.928567 GACCCCACATCCCCCTCAA 60.929 63.158 0.00 0.00 0.00 3.02
574 601 2.211468 GACCCCACATCCCCCTCAAC 62.211 65.000 0.00 0.00 0.00 3.18
575 602 2.272146 CCCACATCCCCCTCAACG 59.728 66.667 0.00 0.00 0.00 4.10
576 603 2.438434 CCACATCCCCCTCAACGC 60.438 66.667 0.00 0.00 0.00 4.84
577 604 2.671070 CACATCCCCCTCAACGCT 59.329 61.111 0.00 0.00 0.00 5.07
578 605 1.746615 CACATCCCCCTCAACGCTG 60.747 63.158 0.00 0.00 0.00 5.18
579 606 2.224159 ACATCCCCCTCAACGCTGT 61.224 57.895 0.00 0.00 0.00 4.40
580 607 1.450312 CATCCCCCTCAACGCTGTC 60.450 63.158 0.00 0.00 0.00 3.51
581 608 1.918293 ATCCCCCTCAACGCTGTCA 60.918 57.895 0.00 0.00 0.00 3.58
582 609 1.903877 ATCCCCCTCAACGCTGTCAG 61.904 60.000 0.00 0.00 0.00 3.51
583 610 2.743718 CCCCTCAACGCTGTCAGT 59.256 61.111 0.93 0.00 0.00 3.41
584 611 1.669115 CCCCTCAACGCTGTCAGTG 60.669 63.158 11.92 11.92 0.00 3.66
585 612 1.367471 CCCTCAACGCTGTCAGTGA 59.633 57.895 20.13 5.97 0.00 3.41
586 613 0.249868 CCCTCAACGCTGTCAGTGAA 60.250 55.000 20.13 4.38 0.00 3.18
587 614 1.581934 CCTCAACGCTGTCAGTGAAA 58.418 50.000 20.13 4.05 0.00 2.69
588 615 1.939934 CCTCAACGCTGTCAGTGAAAA 59.060 47.619 20.13 3.72 0.00 2.29
635 1040 7.848128 TGAGTCGAGGAAACCTTATTCTTAAT 58.152 34.615 0.00 0.00 31.76 1.40
661 1067 1.182385 GGTGCCGGAATTTCCACCAA 61.182 55.000 18.49 0.00 45.41 3.67
663 1069 2.096248 GTGCCGGAATTTCCACCAATA 58.904 47.619 15.58 0.00 35.91 1.90
669 1075 3.321682 CGGAATTTCCACCAATATGCCAT 59.678 43.478 15.58 0.00 35.91 4.40
671 1077 4.549458 GAATTTCCACCAATATGCCATCG 58.451 43.478 0.00 0.00 0.00 3.84
673 1079 1.965935 TCCACCAATATGCCATCGTG 58.034 50.000 0.00 0.00 0.00 4.35
674 1080 1.211703 TCCACCAATATGCCATCGTGT 59.788 47.619 0.00 0.00 0.00 4.49
676 1082 2.016318 CACCAATATGCCATCGTGTGT 58.984 47.619 0.00 0.00 0.00 3.72
677 1083 2.423185 CACCAATATGCCATCGTGTGTT 59.577 45.455 0.00 0.00 0.00 3.32
693 1099 0.242825 TGTTGGAACGAGGCTCTACG 59.757 55.000 13.50 2.38 0.00 3.51
695 1101 0.809385 TTGGAACGAGGCTCTACGAG 59.191 55.000 13.50 0.00 0.00 4.18
699 1105 1.003652 GAACGAGGCTCTACGAGTAGC 60.004 57.143 13.50 0.00 38.03 3.58
701 1107 0.305313 CGAGGCTCTACGAGTAGCAC 59.695 60.000 13.50 0.61 40.61 4.40
704 1110 1.096416 GGCTCTACGAGTAGCACACT 58.904 55.000 5.44 0.00 40.61 3.55
759 1166 3.730761 CCCGTCCGTCGTCGAAGT 61.731 66.667 2.98 0.00 39.71 3.01
782 1189 1.535896 CAAACGAGAGAGGACGAGACA 59.464 52.381 0.00 0.00 0.00 3.41
806 1213 2.361357 CTCGTCGACAGGGAGGGT 60.361 66.667 17.16 0.00 0.00 4.34
809 1216 2.273179 CGTCGACAGGGAGGGTGAA 61.273 63.158 17.16 0.00 0.00 3.18
817 1224 1.003118 CAGGGAGGGTGAACGATGAAA 59.997 52.381 0.00 0.00 0.00 2.69
818 1225 1.702957 AGGGAGGGTGAACGATGAAAA 59.297 47.619 0.00 0.00 0.00 2.29
839 1268 8.655651 GAAAACAGTGGAAAATATGGTTTCAA 57.344 30.769 9.11 0.00 44.78 2.69
874 1918 7.653767 GGTCTATATAAACCCATCTCGTTTG 57.346 40.000 0.00 0.00 35.19 2.93
876 1920 6.147328 GTCTATATAAACCCATCTCGTTTGCC 59.853 42.308 0.00 0.00 35.19 4.52
877 1921 2.570415 TAAACCCATCTCGTTTGCCA 57.430 45.000 0.00 0.00 35.19 4.92
880 1924 0.110486 ACCCATCTCGTTTGCCACTT 59.890 50.000 0.00 0.00 0.00 3.16
926 2064 5.725362 AGGTACAACTTGAAGCTTAGCTAG 58.275 41.667 7.32 3.83 38.25 3.42
979 2117 3.994317 TCTGATATCCTCACCAACTCCA 58.006 45.455 0.00 0.00 0.00 3.86
1008 2146 1.856629 AAGATCTTGCAATGGGTGGG 58.143 50.000 7.30 0.00 0.00 4.61
1026 2164 4.143740 CTCTCCCTTGAGCACCCT 57.856 61.111 0.00 0.00 38.58 4.34
1032 2170 2.437897 CTTGAGCACCCTTGGGCT 59.562 61.111 5.46 0.00 44.48 5.19
1058 2196 2.638363 CCTTTGGCCTCCTAGGTATACC 59.362 54.545 14.54 14.54 37.80 2.73
1060 2198 0.855598 TGGCCTCCTAGGTATACCGT 59.144 55.000 16.31 7.58 42.08 4.83
1063 2201 1.000618 GCCTCCTAGGTATACCGTTGC 59.999 57.143 16.31 10.45 42.08 4.17
1070 2208 0.179065 GGTATACCGTTGCCCACCTC 60.179 60.000 6.06 0.00 0.00 3.85
1135 2273 9.748708 TTCATTTTCTTTTCATTCTCGTTTCAT 57.251 25.926 0.00 0.00 0.00 2.57
1210 2409 4.763793 ACATGTGATCCTTCCTCTTTTGTG 59.236 41.667 0.00 0.00 0.00 3.33
1211 2410 4.705110 TGTGATCCTTCCTCTTTTGTGA 57.295 40.909 0.00 0.00 0.00 3.58
1212 2411 5.047566 TGTGATCCTTCCTCTTTTGTGAA 57.952 39.130 0.00 0.00 0.00 3.18
1213 2412 4.821805 TGTGATCCTTCCTCTTTTGTGAAC 59.178 41.667 0.00 0.00 0.00 3.18
1214 2413 4.065088 TGATCCTTCCTCTTTTGTGAACG 58.935 43.478 0.00 0.00 0.00 3.95
1215 2414 3.553828 TCCTTCCTCTTTTGTGAACGT 57.446 42.857 0.00 0.00 0.00 3.99
1216 2415 4.675976 TCCTTCCTCTTTTGTGAACGTA 57.324 40.909 0.00 0.00 0.00 3.57
1217 2416 4.628074 TCCTTCCTCTTTTGTGAACGTAG 58.372 43.478 0.00 0.00 0.00 3.51
1218 2417 3.186613 CCTTCCTCTTTTGTGAACGTAGC 59.813 47.826 0.00 0.00 0.00 3.58
1219 2418 2.762745 TCCTCTTTTGTGAACGTAGCC 58.237 47.619 0.00 0.00 0.00 3.93
1227 2426 1.616374 TGTGAACGTAGCCAGTGATCA 59.384 47.619 0.00 0.00 0.00 2.92
1237 2436 2.092538 AGCCAGTGATCAATCCTTCCAG 60.093 50.000 0.00 0.00 0.00 3.86
1247 2446 3.140144 TCAATCCTTCCAGTTTTGTCCCT 59.860 43.478 0.00 0.00 0.00 4.20
1275 2474 0.322456 CATTGTTGAAGGCCCCTCGA 60.322 55.000 0.00 0.00 0.00 4.04
1283 2482 0.255033 AAGGCCCCTCGATGTTTACC 59.745 55.000 0.00 0.00 0.00 2.85
1289 2488 3.427573 CCCCTCGATGTTTACCCTTTTT 58.572 45.455 0.00 0.00 0.00 1.94
1335 2534 7.171630 AGAATAGTTCATTAGTCGTTGGAGT 57.828 36.000 0.00 0.00 0.00 3.85
1374 2573 5.654209 GGAGAAAAGGGAAAGCAAGATGTAT 59.346 40.000 0.00 0.00 0.00 2.29
1376 2575 7.339466 GGAGAAAAGGGAAAGCAAGATGTATAA 59.661 37.037 0.00 0.00 0.00 0.98
1382 2581 9.700831 AAGGGAAAGCAAGATGTATAATAAACT 57.299 29.630 0.00 0.00 0.00 2.66
1411 2610 1.212935 GGCTCCAGTCCAATATGGTGT 59.787 52.381 0.00 0.00 39.03 4.16
1412 2611 2.357154 GGCTCCAGTCCAATATGGTGTT 60.357 50.000 0.00 0.00 39.03 3.32
1414 2613 3.873801 GCTCCAGTCCAATATGGTGTTGT 60.874 47.826 0.00 0.00 39.03 3.32
1417 2616 3.440173 CCAGTCCAATATGGTGTTGTGTC 59.560 47.826 0.00 0.00 39.03 3.67
1421 2620 2.164219 CCAATATGGTGTTGTGTCAGGC 59.836 50.000 0.00 0.00 31.35 4.85
1422 2621 2.819019 CAATATGGTGTTGTGTCAGGCA 59.181 45.455 0.00 0.00 0.00 4.75
1424 2623 2.877097 ATGGTGTTGTGTCAGGCATA 57.123 45.000 0.00 0.00 0.00 3.14
1425 2624 1.890876 TGGTGTTGTGTCAGGCATAC 58.109 50.000 0.00 0.00 0.00 2.39
1427 2626 2.226330 GGTGTTGTGTCAGGCATACAA 58.774 47.619 0.00 0.00 33.95 2.41
1428 2627 2.226437 GGTGTTGTGTCAGGCATACAAG 59.774 50.000 0.00 0.00 36.83 3.16
1430 2629 3.058914 GTGTTGTGTCAGGCATACAAGTC 60.059 47.826 0.00 0.00 36.83 3.01
1431 2630 3.138304 GTTGTGTCAGGCATACAAGTCA 58.862 45.455 0.00 0.00 36.83 3.41
1432 2631 3.483808 TGTGTCAGGCATACAAGTCAA 57.516 42.857 0.00 0.00 0.00 3.18
1433 2632 4.019792 TGTGTCAGGCATACAAGTCAAT 57.980 40.909 0.00 0.00 0.00 2.57
1434 2633 5.159273 TGTGTCAGGCATACAAGTCAATA 57.841 39.130 0.00 0.00 0.00 1.90
1435 2634 5.555966 TGTGTCAGGCATACAAGTCAATAA 58.444 37.500 0.00 0.00 0.00 1.40
1436 2635 6.000840 TGTGTCAGGCATACAAGTCAATAAA 58.999 36.000 0.00 0.00 0.00 1.40
1437 2636 6.072728 TGTGTCAGGCATACAAGTCAATAAAC 60.073 38.462 0.00 0.00 0.00 2.01
1438 2637 6.149474 GTGTCAGGCATACAAGTCAATAAACT 59.851 38.462 0.00 0.00 0.00 2.66
1439 2638 7.333423 GTGTCAGGCATACAAGTCAATAAACTA 59.667 37.037 0.00 0.00 0.00 2.24
1440 2639 7.880713 TGTCAGGCATACAAGTCAATAAACTAA 59.119 33.333 0.00 0.00 0.00 2.24
1441 2640 8.175716 GTCAGGCATACAAGTCAATAAACTAAC 58.824 37.037 0.00 0.00 0.00 2.34
1442 2641 8.100791 TCAGGCATACAAGTCAATAAACTAACT 58.899 33.333 0.00 0.00 0.00 2.24
1464 2663 0.912486 AGCTCGCTAAGTGGGGATTT 59.088 50.000 0.00 0.00 0.00 2.17
1465 2664 2.116238 AGCTCGCTAAGTGGGGATTTA 58.884 47.619 0.00 0.00 0.00 1.40
1466 2665 2.706190 AGCTCGCTAAGTGGGGATTTAT 59.294 45.455 0.00 0.00 0.00 1.40
1467 2666 3.136626 AGCTCGCTAAGTGGGGATTTATT 59.863 43.478 0.00 0.00 0.00 1.40
1481 2682 9.344772 GTGGGGATTTATTGTACATGTAATACA 57.655 33.333 7.25 0.90 0.00 2.29
1592 2802 2.705826 GCCTCAGCTTTGATCGCG 59.294 61.111 0.00 0.00 35.50 5.87
1785 3050 1.801332 GCTCAAGTCCGACGAGCTA 59.199 57.895 16.78 0.00 46.86 3.32
1816 3081 1.078848 ATCAACTCTGCCGGCTGTC 60.079 57.895 29.70 0.00 0.00 3.51
1850 3115 3.538591 TCTACATCGTCATGTACCTCGT 58.461 45.455 0.00 0.00 41.81 4.18
1923 3286 2.123589 TGTGAGTCCACCCTTCTTCAA 58.876 47.619 0.00 0.00 42.53 2.69
1964 3335 1.542472 TGCTGACACAGAAATGCATGG 59.458 47.619 0.00 0.00 32.44 3.66
2002 3376 1.715785 GAAGATCCTCCTCCTCCTGG 58.284 60.000 0.00 0.00 0.00 4.45
2011 3385 4.316823 TCCTCCTGGACGTGGGCT 62.317 66.667 0.00 0.00 37.46 5.19
2037 3411 0.671251 GCCTCATCCTACTCCTCACG 59.329 60.000 0.00 0.00 0.00 4.35
2168 3556 3.492337 CATCCTCCCTCTAGAGTGGTAC 58.508 54.545 18.42 0.00 31.53 3.34
2169 3557 1.489649 TCCTCCCTCTAGAGTGGTACG 59.510 57.143 18.42 11.12 31.53 3.67
2170 3558 1.489649 CCTCCCTCTAGAGTGGTACGA 59.510 57.143 18.42 3.31 31.53 3.43
2204 3595 9.970395 TGATCCATGATAAATTCTTACAATTGC 57.030 29.630 5.05 0.00 0.00 3.56
2371 3776 3.859411 TGAACAACACAAACAGAACCC 57.141 42.857 0.00 0.00 0.00 4.11
2382 3787 2.887151 ACAGAACCCCTCAATTCCTG 57.113 50.000 0.00 0.00 0.00 3.86
2426 3845 6.841119 TGATCTTAATGTTGGTGTTGAATCG 58.159 36.000 0.00 0.00 0.00 3.34
2427 3846 5.041951 TCTTAATGTTGGTGTTGAATCGC 57.958 39.130 0.00 0.00 0.00 4.58
2428 3847 4.517075 TCTTAATGTTGGTGTTGAATCGCA 59.483 37.500 0.00 0.00 0.00 5.10
2561 3993 2.125952 TGCCTGAGCACGTCATCG 60.126 61.111 0.00 0.00 46.52 3.84
2634 4066 4.760047 CCAGCCACCGACGAAGGG 62.760 72.222 0.00 0.00 35.02 3.95
2652 4084 1.156736 GGGAACATCGTGTCTTGTGG 58.843 55.000 0.00 0.00 0.00 4.17
2660 4092 4.560743 TGTCTTGTGGCAGCGGCA 62.561 61.111 11.88 5.90 43.71 5.69
2662 4094 2.518112 TCTTGTGGCAGCGGCAAA 60.518 55.556 11.88 0.63 43.71 3.68
2680 4112 3.814945 CAAAACCAAAGAGATCAGCGTC 58.185 45.455 0.00 0.00 0.00 5.19
2725 4157 0.684479 TCGAGCATGTCTAGGCAGGT 60.684 55.000 11.09 4.62 35.71 4.00
2726 4158 0.529337 CGAGCATGTCTAGGCAGGTG 60.529 60.000 11.09 2.00 35.71 4.00
2727 4159 0.539051 GAGCATGTCTAGGCAGGTGT 59.461 55.000 11.09 0.00 35.71 4.16
2729 4161 0.745845 GCATGTCTAGGCAGGTGTGG 60.746 60.000 11.09 0.00 32.92 4.17
2730 4162 0.615331 CATGTCTAGGCAGGTGTGGT 59.385 55.000 2.27 0.00 0.00 4.16
2731 4163 0.615331 ATGTCTAGGCAGGTGTGGTG 59.385 55.000 2.27 0.00 0.00 4.17
2732 4164 1.296715 GTCTAGGCAGGTGTGGTGG 59.703 63.158 0.00 0.00 0.00 4.61
2734 4166 1.192146 TCTAGGCAGGTGTGGTGGAC 61.192 60.000 0.00 0.00 0.00 4.02
2735 4167 1.460497 TAGGCAGGTGTGGTGGACA 60.460 57.895 0.00 0.00 0.00 4.02
2736 4168 1.480212 TAGGCAGGTGTGGTGGACAG 61.480 60.000 0.00 0.00 34.28 3.51
2738 4170 1.376466 GCAGGTGTGGTGGACAGAT 59.624 57.895 0.00 0.00 34.28 2.90
2739 4171 0.250901 GCAGGTGTGGTGGACAGATT 60.251 55.000 0.00 0.00 34.28 2.40
2741 4173 1.349026 CAGGTGTGGTGGACAGATTCT 59.651 52.381 0.00 0.00 34.28 2.40
2742 4174 2.057922 AGGTGTGGTGGACAGATTCTT 58.942 47.619 0.00 0.00 34.28 2.52
2750 4194 3.437049 GGTGGACAGATTCTTAGCACAAC 59.563 47.826 0.00 0.00 0.00 3.32
2753 4197 4.040339 TGGACAGATTCTTAGCACAACTGA 59.960 41.667 0.00 0.00 0.00 3.41
2768 4217 6.868864 AGCACAACTGATACTGTAGTTTACTG 59.131 38.462 0.00 0.00 35.08 2.74
2806 4256 0.328258 GGGCTTGCCTGAGACCTTTA 59.672 55.000 11.71 0.00 41.95 1.85
2810 4260 2.289694 GCTTGCCTGAGACCTTTACTGA 60.290 50.000 0.00 0.00 0.00 3.41
2811 4261 3.620966 GCTTGCCTGAGACCTTTACTGAT 60.621 47.826 0.00 0.00 0.00 2.90
2886 4336 1.246737 GGGGTGGAGCAAAGAAGCTG 61.247 60.000 0.00 0.00 46.75 4.24
2898 4348 1.439543 AGAAGCTGGGGAGACAAAGT 58.560 50.000 0.00 0.00 0.00 2.66
2905 4355 3.209410 CTGGGGAGACAAAGTATGCATC 58.791 50.000 0.19 0.00 0.00 3.91
2908 4358 3.435601 GGGGAGACAAAGTATGCATCCAT 60.436 47.826 0.19 0.00 38.25 3.41
2909 4359 3.567164 GGGAGACAAAGTATGCATCCATG 59.433 47.826 0.19 1.05 38.25 3.66
2985 4435 5.195379 CAAAGTGTTACTGTTCGTAGTTGC 58.805 41.667 0.00 0.00 32.19 4.17
2997 4447 1.792993 CGTAGTTGCTCGTCGTAAGGG 60.793 57.143 0.00 0.00 38.47 3.95
3009 4459 6.292542 GCTCGTCGTAAGGGTTATTTTATTCC 60.293 42.308 0.00 0.00 38.47 3.01
3011 4461 5.050837 CGTCGTAAGGGTTATTTTATTCCGG 60.051 44.000 0.00 0.00 38.47 5.14
3026 4486 1.671979 TCCGGTAGTATCCACTGTCG 58.328 55.000 0.00 0.00 36.14 4.35
3099 4560 5.467035 CCAACATGTGGTTAGATGGTTTT 57.533 39.130 0.00 0.00 43.20 2.43
3109 4606 6.007076 TGGTTAGATGGTTTTAAGTGATGCA 58.993 36.000 0.00 0.00 0.00 3.96
3132 4629 3.243907 CGTTCAGTGGGAGAAGACTTTCT 60.244 47.826 0.00 0.00 46.22 2.52
3168 4671 3.863407 GGACTGAATCCGCCTTTCT 57.137 52.632 0.00 0.00 37.88 2.52
3174 4688 1.804151 TGAATCCGCCTTTCTTTCACG 59.196 47.619 0.00 0.00 0.00 4.35
3184 4698 4.065088 CCTTTCTTTCACGTCTTGGATCA 58.935 43.478 0.00 0.00 0.00 2.92
3189 4703 5.063204 TCTTTCACGTCTTGGATCACAATT 58.937 37.500 0.00 0.00 38.65 2.32
3198 4712 6.811665 CGTCTTGGATCACAATTTGAGTAGTA 59.188 38.462 2.79 0.00 37.77 1.82
3199 4713 7.009631 CGTCTTGGATCACAATTTGAGTAGTAG 59.990 40.741 2.79 0.00 37.77 2.57
3226 4752 6.913132 GTGTCTTTCTTTTTAGAGGAAAGCAC 59.087 38.462 17.08 17.08 42.99 4.40
3227 4753 6.601613 TGTCTTTCTTTTTAGAGGAAAGCACA 59.398 34.615 9.06 10.59 42.99 4.57
3228 4754 7.135467 GTCTTTCTTTTTAGAGGAAAGCACAG 58.865 38.462 9.06 0.00 42.99 3.66
3270 4798 3.498481 GGATGTGCTGGGCTTTATATGGA 60.498 47.826 0.00 0.00 0.00 3.41
3280 4808 4.394729 GGCTTTATATGGACCGAAATGGA 58.605 43.478 0.00 0.00 42.00 3.41
3296 4824 2.244486 TGGAATGGGCCTTTATTGCA 57.756 45.000 4.53 14.50 33.17 4.08
3313 4841 0.596083 GCATCCGACTCATCTCACCG 60.596 60.000 0.00 0.00 0.00 4.94
3314 4842 1.025041 CATCCGACTCATCTCACCGA 58.975 55.000 0.00 0.00 0.00 4.69
3315 4843 1.001924 CATCCGACTCATCTCACCGAG 60.002 57.143 0.00 0.00 35.30 4.63
3316 4844 0.252197 TCCGACTCATCTCACCGAGA 59.748 55.000 0.00 0.00 43.20 4.04
3317 4845 0.378962 CCGACTCATCTCACCGAGAC 59.621 60.000 0.00 0.00 41.76 3.36
3318 4846 0.378962 CGACTCATCTCACCGAGACC 59.621 60.000 0.00 0.00 41.76 3.85
3319 4847 1.757682 GACTCATCTCACCGAGACCT 58.242 55.000 0.00 0.00 41.76 3.85
3347 4889 5.854431 TTTATTTTGAGGCAATTTTCCGC 57.146 34.783 0.00 0.00 0.00 5.54
3388 4932 7.281999 GCTTATAGTGAGATGGAAGAAGCTTTT 59.718 37.037 0.00 0.00 35.15 2.27
3432 4978 2.962089 GCCCATTAGCGCACAATTG 58.038 52.632 11.47 3.24 0.00 2.32
3434 4980 1.534595 GCCCATTAGCGCACAATTGAG 60.535 52.381 13.59 5.31 0.00 3.02
3439 4985 4.439153 CCATTAGCGCACAATTGAGACAAT 60.439 41.667 13.59 1.24 0.00 2.71
3441 4987 2.153645 AGCGCACAATTGAGACAATGA 58.846 42.857 13.59 0.00 0.00 2.57
3445 4991 4.030977 GCGCACAATTGAGACAATGAAATC 59.969 41.667 13.59 0.00 0.00 2.17
3446 4992 4.261349 CGCACAATTGAGACAATGAAATCG 59.739 41.667 13.59 0.00 0.00 3.34
3447 4993 5.393124 GCACAATTGAGACAATGAAATCGA 58.607 37.500 13.59 0.00 0.00 3.59
3449 4995 6.621380 GCACAATTGAGACAATGAAATCGAGA 60.621 38.462 13.59 0.00 0.00 4.04
3539 5088 5.589452 ACTGTTGGTTTCGTGGTAAAATACA 59.411 36.000 0.00 0.00 0.00 2.29
3545 5094 3.042871 TCGTGGTAAAATACAAGGCGT 57.957 42.857 0.00 0.00 0.00 5.68
3546 5095 2.737783 TCGTGGTAAAATACAAGGCGTG 59.262 45.455 0.00 0.00 0.00 5.34
3547 5096 2.737783 CGTGGTAAAATACAAGGCGTGA 59.262 45.455 7.60 0.00 0.00 4.35
3548 5097 3.372822 CGTGGTAAAATACAAGGCGTGAT 59.627 43.478 7.60 0.00 0.00 3.06
3554 5103 5.705609 AAAATACAAGGCGTGATCAACTT 57.294 34.783 7.60 0.00 0.00 2.66
3555 5104 4.946784 AATACAAGGCGTGATCAACTTC 57.053 40.909 7.60 0.00 0.00 3.01
3564 5113 3.191371 GCGTGATCAACTTCAGGGAAAAT 59.809 43.478 0.00 0.00 33.26 1.82
3568 5117 6.183360 CGTGATCAACTTCAGGGAAAATAGAC 60.183 42.308 0.00 0.00 0.00 2.59
3569 5118 6.655003 GTGATCAACTTCAGGGAAAATAGACA 59.345 38.462 0.00 0.00 0.00 3.41
3573 5122 7.060421 TCAACTTCAGGGAAAATAGACAGTTT 58.940 34.615 0.00 0.00 0.00 2.66
3591 5140 2.432119 TTTTTCGCTGGTTTCCCCC 58.568 52.632 0.00 0.00 0.00 5.40
3674 5223 8.460831 TCTTTCTTTTTCCTTTGTTTTCTTCG 57.539 30.769 0.00 0.00 0.00 3.79
3675 5224 7.544217 TCTTTCTTTTTCCTTTGTTTTCTTCGG 59.456 33.333 0.00 0.00 0.00 4.30
3676 5225 6.275494 TCTTTTTCCTTTGTTTTCTTCGGT 57.725 33.333 0.00 0.00 0.00 4.69
3677 5226 6.693466 TCTTTTTCCTTTGTTTTCTTCGGTT 58.307 32.000 0.00 0.00 0.00 4.44
3678 5227 6.809689 TCTTTTTCCTTTGTTTTCTTCGGTTC 59.190 34.615 0.00 0.00 0.00 3.62
3679 5228 5.907866 TTTCCTTTGTTTTCTTCGGTTCT 57.092 34.783 0.00 0.00 0.00 3.01
3680 5229 5.494632 TTCCTTTGTTTTCTTCGGTTCTC 57.505 39.130 0.00 0.00 0.00 2.87
3681 5230 4.777463 TCCTTTGTTTTCTTCGGTTCTCT 58.223 39.130 0.00 0.00 0.00 3.10
3682 5231 5.920903 TCCTTTGTTTTCTTCGGTTCTCTA 58.079 37.500 0.00 0.00 0.00 2.43
3683 5232 6.531021 TCCTTTGTTTTCTTCGGTTCTCTAT 58.469 36.000 0.00 0.00 0.00 1.98
3684 5233 6.426937 TCCTTTGTTTTCTTCGGTTCTCTATG 59.573 38.462 0.00 0.00 0.00 2.23
3685 5234 6.204882 CCTTTGTTTTCTTCGGTTCTCTATGT 59.795 38.462 0.00 0.00 0.00 2.29
3686 5235 7.255139 CCTTTGTTTTCTTCGGTTCTCTATGTT 60.255 37.037 0.00 0.00 0.00 2.71
3687 5236 7.562454 TTGTTTTCTTCGGTTCTCTATGTTT 57.438 32.000 0.00 0.00 0.00 2.83
3688 5237 7.186021 TGTTTTCTTCGGTTCTCTATGTTTC 57.814 36.000 0.00 0.00 0.00 2.78
3689 5238 6.990349 TGTTTTCTTCGGTTCTCTATGTTTCT 59.010 34.615 0.00 0.00 0.00 2.52
3690 5239 7.497909 TGTTTTCTTCGGTTCTCTATGTTTCTT 59.502 33.333 0.00 0.00 0.00 2.52
3691 5240 8.343366 GTTTTCTTCGGTTCTCTATGTTTCTTT 58.657 33.333 0.00 0.00 0.00 2.52
3692 5241 7.653767 TTCTTCGGTTCTCTATGTTTCTTTC 57.346 36.000 0.00 0.00 0.00 2.62
3693 5242 6.994221 TCTTCGGTTCTCTATGTTTCTTTCT 58.006 36.000 0.00 0.00 0.00 2.52
3694 5243 7.442656 TCTTCGGTTCTCTATGTTTCTTTCTT 58.557 34.615 0.00 0.00 0.00 2.52
3695 5244 7.385205 TCTTCGGTTCTCTATGTTTCTTTCTTG 59.615 37.037 0.00 0.00 0.00 3.02
3696 5245 6.755206 TCGGTTCTCTATGTTTCTTTCTTGA 58.245 36.000 0.00 0.00 0.00 3.02
3697 5246 7.386851 TCGGTTCTCTATGTTTCTTTCTTGAT 58.613 34.615 0.00 0.00 0.00 2.57
3698 5247 7.878127 TCGGTTCTCTATGTTTCTTTCTTGATT 59.122 33.333 0.00 0.00 0.00 2.57
3699 5248 8.507249 CGGTTCTCTATGTTTCTTTCTTGATTT 58.493 33.333 0.00 0.00 0.00 2.17
3708 5257 8.519799 TGTTTCTTTCTTGATTTTCACTAGGT 57.480 30.769 0.00 0.00 0.00 3.08
3709 5258 8.966868 TGTTTCTTTCTTGATTTTCACTAGGTT 58.033 29.630 0.00 0.00 0.00 3.50
3710 5259 9.803315 GTTTCTTTCTTGATTTTCACTAGGTTT 57.197 29.630 0.00 0.00 0.00 3.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.567959 GCAAACATCAGTTGGATTAATGCC 59.432 41.667 4.35 1.20 38.17 4.40
1 2 5.170021 TGCAAACATCAGTTGGATTAATGC 58.830 37.500 0.00 0.00 38.17 3.56
51 56 6.159299 TCATCAGATGAGATCCAAGTCTTC 57.841 41.667 9.21 0.00 33.59 2.87
139 145 6.093633 AGGAGCGGTGTGTATTTCTTATTTTC 59.906 38.462 0.00 0.00 0.00 2.29
142 148 5.099042 AGGAGCGGTGTGTATTTCTTATT 57.901 39.130 0.00 0.00 0.00 1.40
146 152 2.615493 CCAAGGAGCGGTGTGTATTTCT 60.615 50.000 0.00 0.00 0.00 2.52
147 153 1.737793 CCAAGGAGCGGTGTGTATTTC 59.262 52.381 0.00 0.00 0.00 2.17
151 157 2.589157 CCCCAAGGAGCGGTGTGTA 61.589 63.158 0.00 0.00 33.47 2.90
153 159 2.690653 TTTCCCCAAGGAGCGGTGTG 62.691 60.000 0.00 0.00 45.19 3.82
158 164 0.811281 GTCAATTTCCCCAAGGAGCG 59.189 55.000 0.00 0.00 45.19 5.03
159 165 1.923356 TGTCAATTTCCCCAAGGAGC 58.077 50.000 0.00 0.00 45.19 4.70
160 166 3.834231 ACATTGTCAATTTCCCCAAGGAG 59.166 43.478 0.00 0.00 45.19 3.69
174 182 4.910195 AGTGCATAAGGAAGACATTGTCA 58.090 39.130 18.57 0.00 34.60 3.58
189 197 2.797491 CGTTCTGTCATCGAGTGCATA 58.203 47.619 0.00 0.00 0.00 3.14
209 217 0.788995 CATCGATCTTCGCTGATGGC 59.211 55.000 0.00 0.00 38.15 4.40
245 254 2.373169 TCTCTGGCTCTGATGGTGTTTT 59.627 45.455 0.00 0.00 0.00 2.43
267 276 2.355132 CAGGCTCTGCATGAAGAATGTC 59.645 50.000 4.55 0.00 43.36 3.06
273 282 1.030488 CACCCAGGCTCTGCATGAAG 61.030 60.000 5.76 0.00 43.36 3.02
278 287 3.640407 GACCACCCAGGCTCTGCA 61.640 66.667 0.00 0.00 43.14 4.41
279 288 4.767255 CGACCACCCAGGCTCTGC 62.767 72.222 0.00 0.00 43.14 4.26
291 300 0.389817 CTGAATCCAAGCGACGACCA 60.390 55.000 0.00 0.00 0.00 4.02
297 306 4.051237 CGTCATATTCTGAATCCAAGCGA 58.949 43.478 6.10 0.00 35.07 4.93
300 309 3.185188 CGCCGTCATATTCTGAATCCAAG 59.815 47.826 6.10 0.00 35.07 3.61
306 315 2.951457 TGTCGCCGTCATATTCTGAA 57.049 45.000 0.00 0.00 35.07 3.02
308 317 3.123050 TCATTGTCGCCGTCATATTCTG 58.877 45.455 0.00 0.00 0.00 3.02
321 330 7.223582 AGTGTTCTATTTGCTAGATCATTGTCG 59.776 37.037 0.00 0.00 38.07 4.35
333 342 6.360370 TTCTAGGACAGTGTTCTATTTGCT 57.640 37.500 11.84 0.00 0.00 3.91
352 361 0.459585 GCGGTGCTCGTCCATTTCTA 60.460 55.000 2.43 0.00 41.72 2.10
356 382 2.244117 ATCAGCGGTGCTCGTCCATT 62.244 55.000 10.38 0.00 36.40 3.16
357 383 2.635229 GATCAGCGGTGCTCGTCCAT 62.635 60.000 10.38 0.00 36.40 3.41
365 391 4.783621 TGGCCAGATCAGCGGTGC 62.784 66.667 10.38 0.00 0.00 5.01
370 396 2.302445 AGATATGTCTGGCCAGATCAGC 59.698 50.000 37.07 25.67 39.97 4.26
372 398 4.445305 CCAAAGATATGTCTGGCCAGATCA 60.445 45.833 37.07 32.03 39.97 2.92
393 419 4.324254 GGATCTTGTCAGTACATTTCCCCA 60.324 45.833 0.00 0.00 34.97 4.96
428 454 0.323629 TCTCCGATTCCGCCAACTTT 59.676 50.000 0.00 0.00 0.00 2.66
449 475 6.477033 CCTTGGTGACTTGATTCTATAACTCG 59.523 42.308 0.00 0.00 0.00 4.18
454 480 5.421056 ACGTCCTTGGTGACTTGATTCTATA 59.579 40.000 0.00 0.00 32.97 1.31
480 507 2.157738 GTGTCTTTCAGCTGAATGGCT 58.842 47.619 33.65 0.00 44.10 4.75
481 508 1.200948 GGTGTCTTTCAGCTGAATGGC 59.799 52.381 30.08 30.08 40.87 4.40
491 518 2.432874 TGGTCTTCGAAGGTGTCTTTCA 59.567 45.455 24.37 8.87 32.52 2.69
505 532 2.450476 AGTGCCATCCATTTGGTCTTC 58.550 47.619 0.00 0.00 39.11 2.87
517 544 3.447586 TCTGGTAGTGTCTTAGTGCCATC 59.552 47.826 0.00 0.00 42.63 3.51
521 548 3.447586 TGGATCTGGTAGTGTCTTAGTGC 59.552 47.826 0.00 0.00 0.00 4.40
525 552 6.611236 TGATTGATGGATCTGGTAGTGTCTTA 59.389 38.462 0.00 0.00 0.00 2.10
533 560 6.464892 GGTCATCTTGATTGATGGATCTGGTA 60.465 42.308 4.91 0.00 42.82 3.25
544 571 3.371917 GGATGTGGGGTCATCTTGATTGA 60.372 47.826 6.63 0.00 42.45 2.57
546 573 2.091665 GGGATGTGGGGTCATCTTGATT 60.092 50.000 6.63 0.00 42.45 2.57
561 588 2.185310 GACAGCGTTGAGGGGGATGT 62.185 60.000 6.16 0.00 32.27 3.06
562 589 1.450312 GACAGCGTTGAGGGGGATG 60.450 63.158 6.16 0.00 0.00 3.51
563 590 1.903877 CTGACAGCGTTGAGGGGGAT 61.904 60.000 6.16 0.00 0.00 3.85
564 591 2.525629 TGACAGCGTTGAGGGGGA 60.526 61.111 6.16 0.00 0.00 4.81
567 594 0.249868 TTCACTGACAGCGTTGAGGG 60.250 55.000 6.16 0.00 0.00 4.30
569 596 3.063997 AGTTTTTCACTGACAGCGTTGAG 59.936 43.478 6.16 0.00 32.83 3.02
570 597 3.006940 AGTTTTTCACTGACAGCGTTGA 58.993 40.909 6.16 0.00 32.83 3.18
573 600 2.627945 TGAGTTTTTCACTGACAGCGT 58.372 42.857 1.25 0.00 35.01 5.07
610 1015 5.740290 AAGAATAAGGTTTCCTCGACTCA 57.260 39.130 0.00 0.00 30.89 3.41
649 1055 4.037923 ACGATGGCATATTGGTGGAAATTC 59.962 41.667 0.00 0.00 0.00 2.17
661 1067 2.682856 GTTCCAACACACGATGGCATAT 59.317 45.455 0.00 0.00 35.09 1.78
663 1069 0.881118 GTTCCAACACACGATGGCAT 59.119 50.000 0.00 0.00 35.09 4.40
669 1075 1.593209 GCCTCGTTCCAACACACGA 60.593 57.895 0.00 0.00 43.00 4.35
671 1077 0.249911 AGAGCCTCGTTCCAACACAC 60.250 55.000 0.00 0.00 0.00 3.82
673 1079 1.711206 GTAGAGCCTCGTTCCAACAC 58.289 55.000 0.00 0.00 0.00 3.32
674 1080 0.242825 CGTAGAGCCTCGTTCCAACA 59.757 55.000 0.00 0.00 0.00 3.33
676 1082 2.951269 TCGTAGAGCCTCGTTCCAA 58.049 52.632 0.00 0.00 0.00 3.53
677 1083 4.728409 TCGTAGAGCCTCGTTCCA 57.272 55.556 0.00 0.00 0.00 3.53
693 1099 7.648510 GTGGTGATATAGTTAAGTGTGCTACTC 59.351 40.741 0.00 0.00 39.18 2.59
695 1101 7.262772 TGTGGTGATATAGTTAAGTGTGCTAC 58.737 38.462 0.00 0.00 0.00 3.58
699 1105 6.074302 GCGATGTGGTGATATAGTTAAGTGTG 60.074 42.308 0.00 0.00 0.00 3.82
701 1107 5.983118 TGCGATGTGGTGATATAGTTAAGTG 59.017 40.000 0.00 0.00 0.00 3.16
704 1110 6.399639 TCTGCGATGTGGTGATATAGTTAA 57.600 37.500 0.00 0.00 0.00 2.01
745 1151 2.804090 GCCACTTCGACGACGGAC 60.804 66.667 7.55 0.00 40.21 4.79
759 1166 1.176619 TCGTCCTCTCTCGTTTGCCA 61.177 55.000 0.00 0.00 0.00 4.92
797 1204 0.613260 TTCATCGTTCACCCTCCCTG 59.387 55.000 0.00 0.00 0.00 4.45
798 1205 1.358152 TTTCATCGTTCACCCTCCCT 58.642 50.000 0.00 0.00 0.00 4.20
806 1213 5.568685 TTTTCCACTGTTTTCATCGTTCA 57.431 34.783 0.00 0.00 0.00 3.18
809 1216 6.208599 ACCATATTTTCCACTGTTTTCATCGT 59.791 34.615 0.00 0.00 0.00 3.73
817 1224 7.360113 ACTTGAAACCATATTTTCCACTGTT 57.640 32.000 0.00 0.00 35.01 3.16
818 1225 6.976934 ACTTGAAACCATATTTTCCACTGT 57.023 33.333 0.00 0.00 35.01 3.55
871 1915 1.691434 GGATGGGTTTGAAGTGGCAAA 59.309 47.619 0.00 0.00 35.54 3.68
872 1916 1.337118 GGATGGGTTTGAAGTGGCAA 58.663 50.000 0.00 0.00 0.00 4.52
874 1918 1.000843 GTTGGATGGGTTTGAAGTGGC 59.999 52.381 0.00 0.00 0.00 5.01
876 1920 2.558359 GAGGTTGGATGGGTTTGAAGTG 59.442 50.000 0.00 0.00 0.00 3.16
877 1921 2.176798 TGAGGTTGGATGGGTTTGAAGT 59.823 45.455 0.00 0.00 0.00 3.01
880 1924 2.490718 CCTTGAGGTTGGATGGGTTTGA 60.491 50.000 0.00 0.00 0.00 2.69
908 2046 4.870991 GGGTACTAGCTAAGCTTCAAGTTG 59.129 45.833 0.00 0.00 40.44 3.16
926 2064 3.102204 TCTACCAACCTAGCTTGGGTAC 58.898 50.000 18.96 0.00 44.58 3.34
979 2117 6.489361 CCCATTGCAAGATCTTAATTAGCTCT 59.511 38.462 7.86 0.00 30.72 4.09
1058 2196 1.942657 CATCTATTGAGGTGGGCAACG 59.057 52.381 0.00 0.00 29.21 4.10
1060 2198 3.565764 CTCATCTATTGAGGTGGGCAA 57.434 47.619 0.00 0.00 46.89 4.52
1070 2208 9.713740 GAACTGTTAAAAGATGCTCATCTATTG 57.286 33.333 12.28 3.27 46.75 1.90
1135 2273 9.678981 ATACTTCCCCAAGTAGGTAACATATTA 57.321 33.333 1.42 0.00 46.20 0.98
1210 2409 2.866762 GGATTGATCACTGGCTACGTTC 59.133 50.000 0.00 0.00 0.00 3.95
1211 2410 2.501723 AGGATTGATCACTGGCTACGTT 59.498 45.455 0.00 0.00 0.00 3.99
1212 2411 2.111384 AGGATTGATCACTGGCTACGT 58.889 47.619 0.00 0.00 0.00 3.57
1213 2412 2.898729 AGGATTGATCACTGGCTACG 57.101 50.000 0.00 0.00 0.00 3.51
1214 2413 3.118261 TGGAAGGATTGATCACTGGCTAC 60.118 47.826 0.00 0.00 0.00 3.58
1215 2414 3.114606 TGGAAGGATTGATCACTGGCTA 58.885 45.455 0.00 0.00 0.00 3.93
1216 2415 1.918262 TGGAAGGATTGATCACTGGCT 59.082 47.619 0.00 0.00 0.00 4.75
1217 2416 2.295885 CTGGAAGGATTGATCACTGGC 58.704 52.381 0.00 0.00 0.00 4.85
1218 2417 3.641434 ACTGGAAGGATTGATCACTGG 57.359 47.619 0.00 0.00 39.30 4.00
1219 2418 5.242393 ACAAAACTGGAAGGATTGATCACTG 59.758 40.000 0.00 0.00 39.30 3.66
1227 2426 3.767711 GAGGGACAAAACTGGAAGGATT 58.232 45.455 0.00 0.00 39.30 3.01
1237 2436 3.102052 TGTACTGACGAGGGACAAAAC 57.898 47.619 0.00 0.00 0.00 2.43
1247 2446 3.064207 GCCTTCAACAATGTACTGACGA 58.936 45.455 0.00 0.00 0.00 4.20
1335 2534 2.166907 TCTCCCCTTTTGTTTGCCAA 57.833 45.000 0.00 0.00 0.00 4.52
1374 2573 8.154420 ACTGGAGCCCTTTAGTTAGTTTATTA 57.846 34.615 0.00 0.00 0.00 0.98
1376 2575 6.352823 GGACTGGAGCCCTTTAGTTAGTTTAT 60.353 42.308 0.00 0.00 0.00 1.40
1381 2580 2.838202 TGGACTGGAGCCCTTTAGTTAG 59.162 50.000 0.00 0.00 0.00 2.34
1382 2581 2.910544 TGGACTGGAGCCCTTTAGTTA 58.089 47.619 0.00 0.00 0.00 2.24
1383 2582 1.742308 TGGACTGGAGCCCTTTAGTT 58.258 50.000 0.00 0.00 0.00 2.24
1384 2583 1.742308 TTGGACTGGAGCCCTTTAGT 58.258 50.000 0.00 0.00 0.00 2.24
1385 2584 4.392940 CATATTGGACTGGAGCCCTTTAG 58.607 47.826 0.00 0.00 0.00 1.85
1386 2585 3.138283 CCATATTGGACTGGAGCCCTTTA 59.862 47.826 0.00 0.00 40.96 1.85
1387 2586 2.091665 CCATATTGGACTGGAGCCCTTT 60.092 50.000 0.00 0.00 40.96 3.11
1388 2587 1.496429 CCATATTGGACTGGAGCCCTT 59.504 52.381 0.00 0.00 40.96 3.95
1389 2588 1.143813 CCATATTGGACTGGAGCCCT 58.856 55.000 0.00 0.00 40.96 5.19
1398 2597 3.440173 CCTGACACAACACCATATTGGAC 59.560 47.826 0.00 0.00 40.96 4.02
1411 2610 3.483808 TGACTTGTATGCCTGACACAA 57.516 42.857 0.00 0.00 0.00 3.33
1412 2611 3.483808 TTGACTTGTATGCCTGACACA 57.516 42.857 0.00 0.00 0.00 3.72
1414 2613 6.237901 AGTTTATTGACTTGTATGCCTGACA 58.762 36.000 0.00 0.00 0.00 3.58
1417 2616 8.268850 AGTTAGTTTATTGACTTGTATGCCTG 57.731 34.615 0.00 0.00 0.00 4.85
1424 2623 8.709646 CGAGCTTTAGTTAGTTTATTGACTTGT 58.290 33.333 0.00 0.00 0.00 3.16
1425 2624 7.688578 GCGAGCTTTAGTTAGTTTATTGACTTG 59.311 37.037 0.00 0.00 0.00 3.16
1427 2626 7.097834 AGCGAGCTTTAGTTAGTTTATTGACT 58.902 34.615 0.00 0.00 0.00 3.41
1428 2627 7.292129 AGCGAGCTTTAGTTAGTTTATTGAC 57.708 36.000 0.00 0.00 0.00 3.18
1430 2629 8.870879 ACTTAGCGAGCTTTAGTTAGTTTATTG 58.129 33.333 1.86 0.00 0.00 1.90
1431 2630 8.870879 CACTTAGCGAGCTTTAGTTAGTTTATT 58.129 33.333 1.86 0.00 0.00 1.40
1432 2631 7.491696 CCACTTAGCGAGCTTTAGTTAGTTTAT 59.508 37.037 1.86 0.00 0.00 1.40
1433 2632 6.810182 CCACTTAGCGAGCTTTAGTTAGTTTA 59.190 38.462 1.86 0.00 0.00 2.01
1434 2633 5.638234 CCACTTAGCGAGCTTTAGTTAGTTT 59.362 40.000 1.86 0.00 0.00 2.66
1435 2634 5.169295 CCACTTAGCGAGCTTTAGTTAGTT 58.831 41.667 1.86 0.00 0.00 2.24
1436 2635 4.381718 CCCACTTAGCGAGCTTTAGTTAGT 60.382 45.833 1.86 0.00 0.00 2.24
1437 2636 4.113354 CCCACTTAGCGAGCTTTAGTTAG 58.887 47.826 1.86 2.32 0.00 2.34
1438 2637 3.118884 CCCCACTTAGCGAGCTTTAGTTA 60.119 47.826 1.86 0.00 0.00 2.24
1439 2638 2.354805 CCCCACTTAGCGAGCTTTAGTT 60.355 50.000 1.86 0.00 0.00 2.24
1440 2639 1.207329 CCCCACTTAGCGAGCTTTAGT 59.793 52.381 1.86 4.91 0.00 2.24
1441 2640 1.480954 TCCCCACTTAGCGAGCTTTAG 59.519 52.381 1.86 4.27 0.00 1.85
1442 2641 1.563924 TCCCCACTTAGCGAGCTTTA 58.436 50.000 1.86 0.00 0.00 1.85
1481 2682 3.366070 CGAGAACAAGGAGACACGTGTAT 60.366 47.826 23.44 20.23 0.00 2.29
1539 2749 4.406972 CAGGTAGGTCATGAAGGAGATGAA 59.593 45.833 0.00 0.00 31.65 2.57
1590 2800 2.481952 AGAGAGAAACAATGTTGAGCGC 59.518 45.455 0.00 0.00 0.00 5.92
1592 2802 5.063312 GCTAGAGAGAGAAACAATGTTGAGC 59.937 44.000 0.00 0.00 0.00 4.26
1785 3050 2.570752 AGAGTTGATGGTGATGAGCAGT 59.429 45.455 0.00 0.00 31.77 4.40
1816 3081 4.611943 ACGATGTAGATGGTTTCGATGAG 58.388 43.478 0.00 0.00 34.15 2.90
1850 3115 1.371145 GCTTGCTTTGGCGCGTAAA 60.371 52.632 8.43 9.19 42.25 2.01
1904 3267 2.158813 TGTTGAAGAAGGGTGGACTCAC 60.159 50.000 0.00 0.00 42.91 3.51
1907 3270 2.127708 ACTGTTGAAGAAGGGTGGACT 58.872 47.619 0.00 0.00 0.00 3.85
1964 3335 1.226491 GCCGTGAACATCTGCATGC 60.226 57.895 11.82 11.82 32.57 4.06
2002 3376 3.723348 GCCGAACAAGCCCACGTC 61.723 66.667 0.00 0.00 0.00 4.34
2011 3385 1.480954 GAGTAGGATGAGGCCGAACAA 59.519 52.381 0.00 0.00 0.00 2.83
2168 3556 8.915871 AATTTATCATGGATCAACAAACTTCG 57.084 30.769 0.00 0.00 0.00 3.79
2204 3595 4.277258 GCTGCAATCGTCAATTCATAGTG 58.723 43.478 0.00 0.00 0.00 2.74
2212 3603 1.308069 AAGGCGCTGCAATCGTCAAT 61.308 50.000 7.64 1.32 33.43 2.57
2366 3771 2.305927 TGAGTCAGGAATTGAGGGGTTC 59.694 50.000 0.00 0.00 36.21 3.62
2371 3776 6.830873 AGAAATTTGAGTCAGGAATTGAGG 57.169 37.500 0.00 0.00 36.21 3.86
2427 3846 0.459585 GTTGGGAAGCTGCATGCATG 60.460 55.000 22.97 22.70 45.94 4.06
2428 3847 0.901114 TGTTGGGAAGCTGCATGCAT 60.901 50.000 22.97 6.38 45.94 3.96
2561 3993 2.950194 GCCGAGCTTAGCGACGTC 60.950 66.667 19.91 5.18 33.52 4.34
2634 4066 0.517316 GCCACAAGACACGATGTTCC 59.483 55.000 0.00 0.00 0.00 3.62
2645 4077 2.124060 TTTTGCCGCTGCCACAAGA 61.124 52.632 0.00 0.00 36.33 3.02
2652 4084 0.940991 CTCTTTGGTTTTGCCGCTGC 60.941 55.000 0.00 0.00 41.21 5.25
2660 4092 2.480419 CGACGCTGATCTCTTTGGTTTT 59.520 45.455 0.00 0.00 0.00 2.43
2662 4094 1.272490 TCGACGCTGATCTCTTTGGTT 59.728 47.619 0.00 0.00 0.00 3.67
2680 4112 1.197721 GTTGCCATGTCAACCTTCTCG 59.802 52.381 8.42 0.00 40.18 4.04
2725 4157 2.637382 TGCTAAGAATCTGTCCACCACA 59.363 45.455 0.00 0.00 0.00 4.17
2726 4158 3.003480 GTGCTAAGAATCTGTCCACCAC 58.997 50.000 0.00 0.00 0.00 4.16
2727 4159 2.637382 TGTGCTAAGAATCTGTCCACCA 59.363 45.455 5.43 0.00 0.00 4.17
2729 4161 4.153117 CAGTTGTGCTAAGAATCTGTCCAC 59.847 45.833 0.00 0.00 0.00 4.02
2730 4162 4.040339 TCAGTTGTGCTAAGAATCTGTCCA 59.960 41.667 0.00 0.00 0.00 4.02
2731 4163 4.569943 TCAGTTGTGCTAAGAATCTGTCC 58.430 43.478 0.00 0.00 0.00 4.02
2732 4164 7.009999 CAGTATCAGTTGTGCTAAGAATCTGTC 59.990 40.741 0.00 0.00 0.00 3.51
2734 4166 6.815641 ACAGTATCAGTTGTGCTAAGAATCTG 59.184 38.462 0.00 0.00 0.00 2.90
2735 4167 6.940739 ACAGTATCAGTTGTGCTAAGAATCT 58.059 36.000 0.00 0.00 0.00 2.40
2736 4168 7.976734 ACTACAGTATCAGTTGTGCTAAGAATC 59.023 37.037 0.00 0.00 0.00 2.52
2738 4170 7.228314 ACTACAGTATCAGTTGTGCTAAGAA 57.772 36.000 0.00 0.00 0.00 2.52
2739 4171 6.835819 ACTACAGTATCAGTTGTGCTAAGA 57.164 37.500 0.00 0.00 0.00 2.10
2741 4173 8.582437 AGTAAACTACAGTATCAGTTGTGCTAA 58.418 33.333 0.00 0.00 35.23 3.09
2742 4174 8.027189 CAGTAAACTACAGTATCAGTTGTGCTA 58.973 37.037 0.00 0.00 35.23 3.49
2768 4217 6.347859 AGCCCAAATAGCTACAGTAGATAC 57.652 41.667 12.15 0.00 39.29 2.24
2771 4220 4.683400 GCAAGCCCAAATAGCTACAGTAGA 60.683 45.833 12.15 0.00 40.49 2.59
2822 4272 2.159156 GCATACGTCCATGACACTACCA 60.159 50.000 2.44 0.00 32.09 3.25
2886 4336 2.092429 TGGATGCATACTTTGTCTCCCC 60.092 50.000 11.02 0.00 30.95 4.81
2908 4358 1.152631 CCCCATCCTCATGCATGCA 60.153 57.895 25.04 25.04 0.00 3.96
2909 4359 1.906824 CCCCCATCCTCATGCATGC 60.907 63.158 22.25 11.82 0.00 4.06
2910 4360 1.906824 GCCCCCATCCTCATGCATG 60.907 63.158 21.07 21.07 0.00 4.06
2911 4361 2.524559 GCCCCCATCCTCATGCAT 59.475 61.111 0.00 0.00 0.00 3.96
2912 4362 4.193893 CGCCCCCATCCTCATGCA 62.194 66.667 0.00 0.00 0.00 3.96
2913 4363 4.195334 ACGCCCCCATCCTCATGC 62.195 66.667 0.00 0.00 0.00 4.06
2914 4364 2.203252 CACGCCCCCATCCTCATG 60.203 66.667 0.00 0.00 0.00 3.07
2915 4365 2.692368 ACACGCCCCCATCCTCAT 60.692 61.111 0.00 0.00 0.00 2.90
2916 4366 3.716195 CACACGCCCCCATCCTCA 61.716 66.667 0.00 0.00 0.00 3.86
2917 4367 2.270874 AATCACACGCCCCCATCCTC 62.271 60.000 0.00 0.00 0.00 3.71
2918 4368 1.863155 AAATCACACGCCCCCATCCT 61.863 55.000 0.00 0.00 0.00 3.24
2919 4369 1.379843 AAATCACACGCCCCCATCC 60.380 57.895 0.00 0.00 0.00 3.51
2920 4370 1.384222 GGAAATCACACGCCCCCATC 61.384 60.000 0.00 0.00 0.00 3.51
2921 4371 1.379843 GGAAATCACACGCCCCCAT 60.380 57.895 0.00 0.00 0.00 4.00
2985 4435 6.074676 CGGAATAAAATAACCCTTACGACGAG 60.075 42.308 0.00 0.00 0.00 4.18
2997 4447 8.985805 CAGTGGATACTACCGGAATAAAATAAC 58.014 37.037 9.46 0.00 34.74 1.89
3009 4459 2.876550 TGATCGACAGTGGATACTACCG 59.123 50.000 0.00 0.00 34.74 4.02
3011 4461 5.502153 AAGTGATCGACAGTGGATACTAC 57.498 43.478 0.00 0.00 34.74 2.73
3026 4486 6.952743 ACAAGATTATTGCATCGAAGTGATC 58.047 36.000 0.00 0.00 34.13 2.92
3059 4520 6.085555 TGTTGGTTCGCAATAAAATGGTAA 57.914 33.333 0.00 0.00 0.00 2.85
3061 4522 4.592485 TGTTGGTTCGCAATAAAATGGT 57.408 36.364 0.00 0.00 0.00 3.55
3098 4559 2.805671 CCACTGAACGTGCATCACTTAA 59.194 45.455 0.00 0.00 42.42 1.85
3099 4560 2.412870 CCACTGAACGTGCATCACTTA 58.587 47.619 0.00 0.00 42.42 2.24
3109 4606 1.705873 AGTCTTCTCCCACTGAACGT 58.294 50.000 0.00 0.00 0.00 3.99
3132 4629 5.185056 TCAGTCCAAGAAATCATAGTCGACA 59.815 40.000 19.50 4.13 0.00 4.35
3168 4671 5.298026 TCAAATTGTGATCCAAGACGTGAAA 59.702 36.000 0.00 0.00 36.25 2.69
3174 4688 8.035394 TCTACTACTCAAATTGTGATCCAAGAC 58.965 37.037 1.79 0.00 36.25 3.01
3184 4698 8.643324 AGAAAGACACTCTACTACTCAAATTGT 58.357 33.333 0.00 0.00 0.00 2.71
3198 4712 7.227711 GCTTTCCTCTAAAAAGAAAGACACTCT 59.772 37.037 14.19 0.00 46.05 3.24
3199 4713 7.012421 TGCTTTCCTCTAAAAAGAAAGACACTC 59.988 37.037 14.19 0.00 46.05 3.51
3226 4752 0.311790 AAGGAAACACATGCGCACTG 59.688 50.000 14.90 14.32 0.00 3.66
3227 4753 1.032014 AAAGGAAACACATGCGCACT 58.968 45.000 14.90 0.00 0.00 4.40
3228 4754 1.522258 CAAAAGGAAACACATGCGCAC 59.478 47.619 14.90 0.00 0.00 5.34
3270 4798 0.041090 AAGGCCCATTCCATTTCGGT 59.959 50.000 0.00 0.00 35.57 4.69
3280 4808 1.688197 CGGATGCAATAAAGGCCCATT 59.312 47.619 0.00 0.00 0.00 3.16
3296 4824 1.134068 TCTCGGTGAGATGAGTCGGAT 60.134 52.381 0.00 0.00 33.35 4.18
3325 4867 4.387256 CGCGGAAAATTGCCTCAAAATAAA 59.613 37.500 0.00 0.00 0.00 1.40
3388 4932 0.038067 TTACTGCGGACGCTTTAGCA 60.038 50.000 18.04 0.00 42.21 3.49
3423 4969 4.261349 CGATTTCATTGTCTCAATTGTGCG 59.739 41.667 5.13 0.00 0.00 5.34
3539 5088 1.611673 CCCTGAAGTTGATCACGCCTT 60.612 52.381 0.00 0.00 0.00 4.35
3545 5094 6.778821 TGTCTATTTTCCCTGAAGTTGATCA 58.221 36.000 0.00 0.00 0.00 2.92
3546 5095 6.881602 ACTGTCTATTTTCCCTGAAGTTGATC 59.118 38.462 0.00 0.00 0.00 2.92
3547 5096 6.784031 ACTGTCTATTTTCCCTGAAGTTGAT 58.216 36.000 0.00 0.00 0.00 2.57
3548 5097 6.187727 ACTGTCTATTTTCCCTGAAGTTGA 57.812 37.500 0.00 0.00 0.00 3.18
3648 5197 8.921670 CGAAGAAAACAAAGGAAAAAGAAAGAA 58.078 29.630 0.00 0.00 0.00 2.52
3649 5198 7.544217 CCGAAGAAAACAAAGGAAAAAGAAAGA 59.456 33.333 0.00 0.00 0.00 2.52
3650 5199 7.330946 ACCGAAGAAAACAAAGGAAAAAGAAAG 59.669 33.333 0.00 0.00 0.00 2.62
3651 5200 7.156000 ACCGAAGAAAACAAAGGAAAAAGAAA 58.844 30.769 0.00 0.00 0.00 2.52
3652 5201 6.693466 ACCGAAGAAAACAAAGGAAAAAGAA 58.307 32.000 0.00 0.00 0.00 2.52
3653 5202 6.275494 ACCGAAGAAAACAAAGGAAAAAGA 57.725 33.333 0.00 0.00 0.00 2.52
3654 5203 6.811665 AGAACCGAAGAAAACAAAGGAAAAAG 59.188 34.615 0.00 0.00 0.00 2.27
3655 5204 6.693466 AGAACCGAAGAAAACAAAGGAAAAA 58.307 32.000 0.00 0.00 0.00 1.94
3656 5205 6.152154 AGAGAACCGAAGAAAACAAAGGAAAA 59.848 34.615 0.00 0.00 0.00 2.29
3657 5206 5.650703 AGAGAACCGAAGAAAACAAAGGAAA 59.349 36.000 0.00 0.00 0.00 3.13
3658 5207 5.190677 AGAGAACCGAAGAAAACAAAGGAA 58.809 37.500 0.00 0.00 0.00 3.36
3659 5208 4.777463 AGAGAACCGAAGAAAACAAAGGA 58.223 39.130 0.00 0.00 0.00 3.36
3660 5209 6.204882 ACATAGAGAACCGAAGAAAACAAAGG 59.795 38.462 0.00 0.00 0.00 3.11
3661 5210 7.190920 ACATAGAGAACCGAAGAAAACAAAG 57.809 36.000 0.00 0.00 0.00 2.77
3662 5211 7.562454 AACATAGAGAACCGAAGAAAACAAA 57.438 32.000 0.00 0.00 0.00 2.83
3663 5212 7.497909 AGAAACATAGAGAACCGAAGAAAACAA 59.502 33.333 0.00 0.00 0.00 2.83
3664 5213 6.990349 AGAAACATAGAGAACCGAAGAAAACA 59.010 34.615 0.00 0.00 0.00 2.83
3665 5214 7.422878 AGAAACATAGAGAACCGAAGAAAAC 57.577 36.000 0.00 0.00 0.00 2.43
3666 5215 8.446599 AAAGAAACATAGAGAACCGAAGAAAA 57.553 30.769 0.00 0.00 0.00 2.29
3667 5216 7.931948 AGAAAGAAACATAGAGAACCGAAGAAA 59.068 33.333 0.00 0.00 0.00 2.52
3668 5217 7.442656 AGAAAGAAACATAGAGAACCGAAGAA 58.557 34.615 0.00 0.00 0.00 2.52
3669 5218 6.994221 AGAAAGAAACATAGAGAACCGAAGA 58.006 36.000 0.00 0.00 0.00 2.87
3670 5219 7.385205 TCAAGAAAGAAACATAGAGAACCGAAG 59.615 37.037 0.00 0.00 0.00 3.79
3671 5220 7.214381 TCAAGAAAGAAACATAGAGAACCGAA 58.786 34.615 0.00 0.00 0.00 4.30
3672 5221 6.755206 TCAAGAAAGAAACATAGAGAACCGA 58.245 36.000 0.00 0.00 0.00 4.69
3673 5222 7.602517 ATCAAGAAAGAAACATAGAGAACCG 57.397 36.000 0.00 0.00 0.00 4.44
3682 5231 9.136323 ACCTAGTGAAAATCAAGAAAGAAACAT 57.864 29.630 0.00 0.00 0.00 2.71
3683 5232 8.519799 ACCTAGTGAAAATCAAGAAAGAAACA 57.480 30.769 0.00 0.00 0.00 2.83
3684 5233 9.803315 AAACCTAGTGAAAATCAAGAAAGAAAC 57.197 29.630 0.00 0.00 0.00 2.78


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.