Multiple sequence alignment - TraesCS6B01G015200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G015200 chr6B 100.000 4041 0 0 1 4041 9057063 9061103 0.000000e+00 7463.0
1 TraesCS6B01G015200 chr6B 89.368 1646 152 13 1598 3233 9034888 9036520 0.000000e+00 2049.0
2 TraesCS6B01G015200 chr6B 82.999 747 93 19 3293 4021 9036506 9037236 0.000000e+00 645.0
3 TraesCS6B01G015200 chr6B 83.735 664 78 19 2270 2919 9080345 9080992 5.780000e-168 601.0
4 TraesCS6B01G015200 chr6B 88.038 418 41 6 1748 2161 9079871 9080283 1.690000e-133 486.0
5 TraesCS6B01G015200 chr6B 81.395 602 70 20 468 1058 9034000 9034570 1.710000e-123 453.0
6 TraesCS6B01G015200 chr6B 90.476 105 10 0 3381 3485 214526805 214526701 5.450000e-29 139.0
7 TraesCS6B01G015200 chr6B 100.000 53 0 0 1079 1131 707195497 707195549 9.240000e-17 99.0
8 TraesCS6B01G015200 chr6A 92.487 1584 98 10 1661 3233 3773593 3772020 0.000000e+00 2246.0
9 TraesCS6B01G015200 chr6A 89.700 767 59 10 3293 4041 3772034 3771270 0.000000e+00 961.0
10 TraesCS6B01G015200 chr6A 83.866 657 82 14 2270 2919 3747034 3746395 4.470000e-169 604.0
11 TraesCS6B01G015200 chr6A 86.593 455 39 13 1723 2162 3747542 3747095 2.180000e-132 483.0
12 TraesCS6B01G015200 chr6A 78.431 612 67 23 478 1078 3774408 3773851 5.000000e-89 339.0
13 TraesCS6B01G015200 chr6A 81.597 288 44 3 610 897 3748437 3748159 3.140000e-56 230.0
14 TraesCS6B01G015200 chr6A 89.147 129 8 1 940 1062 3748082 3747954 5.410000e-34 156.0
15 TraesCS6B01G015200 chr6A 90.769 65 3 3 3231 3293 19834169 19834106 2.590000e-12 84.2
16 TraesCS6B01G015200 chr6D 90.737 1641 143 7 1598 3233 4722147 4720511 0.000000e+00 2180.0
17 TraesCS6B01G015200 chr6D 83.475 1059 132 22 1620 2654 3713433 3714472 0.000000e+00 946.0
18 TraesCS6B01G015200 chr6D 89.499 619 42 5 467 1064 3756604 3757220 0.000000e+00 761.0
19 TraesCS6B01G015200 chr6D 83.226 775 100 16 3293 4038 4720525 4719752 0.000000e+00 684.0
20 TraesCS6B01G015200 chr6D 88.224 535 50 5 555 1078 3712515 3713047 9.530000e-176 627.0
21 TraesCS6B01G015200 chr6D 83.683 668 85 12 2270 2917 3726982 3727645 3.450000e-170 608.0
22 TraesCS6B01G015200 chr6D 83.538 650 86 14 2270 2916 3740051 3740682 4.500000e-164 588.0
23 TraesCS6B01G015200 chr6D 85.210 453 47 11 1723 2161 3739543 3739989 7.970000e-122 448.0
24 TraesCS6B01G015200 chr6D 86.241 407 39 11 1 395 3756086 3756487 3.730000e-115 425.0
25 TraesCS6B01G015200 chr6D 80.000 525 68 20 468 987 4723059 4722567 1.790000e-93 353.0
26 TraesCS6B01G015200 chr6D 88.390 267 26 3 1896 2161 3726652 3726914 2.340000e-82 316.0
27 TraesCS6B01G015200 chr6D 82.007 289 47 3 610 897 3725645 3725929 1.450000e-59 241.0
28 TraesCS6B01G015200 chr6D 82.292 288 42 3 610 897 3738706 3738984 1.450000e-59 241.0
29 TraesCS6B01G015200 chr6D 89.759 166 16 1 1135 1300 3713036 3713200 1.140000e-50 211.0
30 TraesCS6B01G015200 chr6D 86.207 145 14 1 940 1078 3726006 3726150 7.000000e-33 152.0
31 TraesCS6B01G015200 chr6D 87.597 129 10 1 940 1062 3739061 3739189 1.170000e-30 145.0
32 TraesCS6B01G015200 chr6D 93.407 91 6 0 988 1078 4722530 4722440 7.050000e-28 135.0
33 TraesCS6B01G015200 chr6D 93.651 63 3 1 1393 1454 3726259 3726321 4.300000e-15 93.5
34 TraesCS6B01G015200 chr6D 93.443 61 2 2 3234 3293 349120377 349120436 5.560000e-14 89.8
35 TraesCS6B01G015200 chr6D 95.238 42 2 0 3009 3050 3727719 3727760 2.610000e-07 67.6
36 TraesCS6B01G015200 chr6D 97.297 37 1 0 785 821 3725934 3725970 3.370000e-06 63.9
37 TraesCS6B01G015200 chr6D 97.297 37 1 0 785 821 3738989 3739025 3.370000e-06 63.9
38 TraesCS6B01G015200 chrUn 83.381 1059 135 24 1620 2654 306428645 306429686 0.000000e+00 942.0
39 TraesCS6B01G015200 chrUn 88.224 535 50 5 555 1078 306427727 306428259 9.530000e-176 627.0
40 TraesCS6B01G015200 chrUn 88.636 220 20 4 3367 3582 371790579 371790797 3.100000e-66 263.0
41 TraesCS6B01G015200 chrUn 89.759 166 16 1 1135 1300 306428248 306428412 1.140000e-50 211.0
42 TraesCS6B01G015200 chrUn 91.803 61 3 2 3234 3293 230053952 230054011 2.590000e-12 84.2
43 TraesCS6B01G015200 chrUn 91.803 61 3 2 3234 3293 399444343 399444284 2.590000e-12 84.2
44 TraesCS6B01G015200 chr1A 77.676 654 94 36 2283 2903 32261198 32261832 6.430000e-93 351.0
45 TraesCS6B01G015200 chr1A 81.586 353 48 11 1793 2132 32260846 32261194 3.980000e-70 276.0
46 TraesCS6B01G015200 chr1A 93.846 65 2 2 1068 1131 1197245 1197308 3.320000e-16 97.1
47 TraesCS6B01G015200 chr1A 98.113 53 0 1 1080 1132 25787736 25787787 1.550000e-14 91.6
48 TraesCS6B01G015200 chr1D 76.923 663 112 29 2283 2921 33639648 33640293 5.000000e-89 339.0
49 TraesCS6B01G015200 chr1D 82.906 351 46 8 1793 2132 33639297 33639644 1.820000e-78 303.0
50 TraesCS6B01G015200 chr1D 87.273 220 23 4 3367 3582 177261406 177261624 3.120000e-61 246.0
51 TraesCS6B01G015200 chr3D 88.636 220 20 4 3367 3582 158931033 158931251 3.100000e-66 263.0
52 TraesCS6B01G015200 chr3D 91.935 62 3 2 3234 3294 457703524 457703464 7.200000e-13 86.1
53 TraesCS6B01G015200 chr3D 91.803 61 3 2 3234 3293 115754404 115754345 2.590000e-12 84.2
54 TraesCS6B01G015200 chr1B 81.143 350 44 11 1793 2132 51106167 51106504 1.110000e-65 261.0
55 TraesCS6B01G015200 chr1B 93.578 109 6 1 1297 1405 359902145 359902038 1.160000e-35 161.0
56 TraesCS6B01G015200 chr1B 80.000 145 22 7 561 704 51105031 51105169 2.570000e-17 100.0
57 TraesCS6B01G015200 chr5D 88.235 221 19 6 3367 3582 432406889 432406671 1.440000e-64 257.0
58 TraesCS6B01G015200 chr5D 87.273 220 23 4 3367 3582 196431067 196431285 3.120000e-61 246.0
59 TraesCS6B01G015200 chr4A 86.818 220 24 2 3367 3582 310768179 310768397 1.450000e-59 241.0
60 TraesCS6B01G015200 chr4A 98.148 54 0 1 1078 1131 603716917 603716969 4.300000e-15 93.5
61 TraesCS6B01G015200 chr3B 86.818 220 23 3 3367 3582 702969561 702969344 1.450000e-59 241.0
62 TraesCS6B01G015200 chr3B 87.288 118 15 0 3367 3484 519146873 519146990 7.050000e-28 135.0
63 TraesCS6B01G015200 chr3B 98.246 57 0 1 1075 1131 655312076 655312131 9.240000e-17 99.0
64 TraesCS6B01G015200 chr3B 100.000 52 0 0 1080 1131 304655 304706 3.320000e-16 97.1
65 TraesCS6B01G015200 chr3B 89.286 56 4 2 3764 3818 42378837 42378891 7.250000e-08 69.4
66 TraesCS6B01G015200 chr4D 95.192 104 4 1 1297 1400 110080934 110081036 3.230000e-36 163.0
67 TraesCS6B01G015200 chr4D 91.803 61 3 2 3234 3293 477264611 477264552 2.590000e-12 84.2
68 TraesCS6B01G015200 chr4D 100.000 32 0 0 3584 3615 35780848 35780879 4.360000e-05 60.2
69 TraesCS6B01G015200 chr3A 96.000 100 4 0 1295 1394 109150963 109150864 3.230000e-36 163.0
70 TraesCS6B01G015200 chr3A 89.091 55 6 0 3764 3818 33998157 33998211 7.250000e-08 69.4
71 TraesCS6B01G015200 chr2A 95.192 104 4 1 1291 1394 101846921 101847023 3.230000e-36 163.0
72 TraesCS6B01G015200 chr2A 88.189 127 10 4 1278 1402 660286754 660286877 3.250000e-31 147.0
73 TraesCS6B01G015200 chr2A 100.000 51 0 0 1081 1131 43282766 43282716 1.200000e-15 95.3
74 TraesCS6B01G015200 chr7B 94.286 105 5 1 1290 1394 562993169 562993066 4.180000e-35 159.0
75 TraesCS6B01G015200 chr7B 91.935 62 2 3 3235 3295 158380268 158380327 2.590000e-12 84.2
76 TraesCS6B01G015200 chr2B 94.286 105 5 1 1294 1398 230532419 230532522 4.180000e-35 159.0
77 TraesCS6B01G015200 chr2B 90.000 120 9 3 1293 1411 601206843 601206960 7.000000e-33 152.0
78 TraesCS6B01G015200 chr4B 90.435 115 11 0 1289 1403 646855887 646856001 7.000000e-33 152.0
79 TraesCS6B01G015200 chr7A 100.000 54 0 0 1078 1131 724297048 724297101 2.570000e-17 100.0
80 TraesCS6B01G015200 chr7A 100.000 53 0 0 1079 1131 594698076 594698024 9.240000e-17 99.0
81 TraesCS6B01G015200 chr7D 93.220 59 2 2 3236 3293 39581133 39581076 7.200000e-13 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G015200 chr6B 9057063 9061103 4040 False 7463.000000 7463 100.000000 1 4041 1 chr6B.!!$F1 4040
1 TraesCS6B01G015200 chr6B 9034000 9037236 3236 False 1049.000000 2049 84.587333 468 4021 3 chr6B.!!$F3 3553
2 TraesCS6B01G015200 chr6B 9079871 9080992 1121 False 543.500000 601 85.886500 1748 2919 2 chr6B.!!$F4 1171
3 TraesCS6B01G015200 chr6A 3771270 3774408 3138 True 1182.000000 2246 86.872667 478 4041 3 chr6A.!!$R3 3563
4 TraesCS6B01G015200 chr6A 3746395 3748437 2042 True 368.250000 604 85.300750 610 2919 4 chr6A.!!$R2 2309
5 TraesCS6B01G015200 chr6D 4719752 4723059 3307 True 838.000000 2180 86.842500 468 4038 4 chr6D.!!$R1 3570
6 TraesCS6B01G015200 chr6D 3712515 3714472 1957 False 594.666667 946 87.152667 555 2654 3 chr6D.!!$F2 2099
7 TraesCS6B01G015200 chr6D 3756086 3757220 1134 False 593.000000 761 87.870000 1 1064 2 chr6D.!!$F5 1063
8 TraesCS6B01G015200 chr6D 3738706 3740682 1976 False 297.180000 588 87.186800 610 2916 5 chr6D.!!$F4 2306
9 TraesCS6B01G015200 chr6D 3725645 3727760 2115 False 220.285714 608 89.496143 610 3050 7 chr6D.!!$F3 2440
10 TraesCS6B01G015200 chrUn 306427727 306429686 1959 False 593.333333 942 87.121333 555 2654 3 chrUn.!!$F3 2099
11 TraesCS6B01G015200 chr1A 32260846 32261832 986 False 313.500000 351 79.631000 1793 2903 2 chr1A.!!$F3 1110
12 TraesCS6B01G015200 chr1D 33639297 33640293 996 False 321.000000 339 79.914500 1793 2921 2 chr1D.!!$F2 1128

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
167 174 0.601576 TTTGACATGGTCCGGACACG 60.602 55.000 34.4 23.34 40.55 4.49 F
175 182 0.957395 GGTCCGGACACGTCTGTAGA 60.957 60.000 34.4 0.00 38.78 2.59 F
416 443 1.112113 AACTGTCACCTGTGAGTCGT 58.888 50.000 0.0 0.00 40.75 4.34 F
1508 1717 1.134431 CCCCCACCAGCATATTTTTGC 60.134 52.381 0.0 0.00 43.09 3.68 F
1557 1766 0.042731 TCTTCCTCGTCCCCCAATCT 59.957 55.000 0.0 0.00 0.00 2.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1377 1585 0.042131 ATGTACTCCCTCCGTCCCAA 59.958 55.0 0.00 0.0 0.00 4.12 R
1538 1747 0.042731 AGATTGGGGGACGAGGAAGA 59.957 55.0 0.00 0.0 0.00 2.87 R
1550 1759 0.936691 AATTGGGGGAGGAGATTGGG 59.063 55.0 0.00 0.0 0.00 4.12 R
2929 3397 0.106819 GCAGTGGCATCCCTGAATCT 60.107 55.0 7.69 0.0 40.72 2.40 R
3235 3704 0.449786 CAAAACGATGCATACGGCCA 59.550 50.0 18.34 0.0 43.89 5.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 7.878621 ATCAGGTGATCCAGAAAATATAGGA 57.121 36.000 0.00 0.00 33.10 2.94
39 40 7.690454 TCAGGTGATCCAGAAAATATAGGAA 57.310 36.000 0.00 0.00 35.89 3.36
40 41 7.739825 TCAGGTGATCCAGAAAATATAGGAAG 58.260 38.462 0.00 0.00 35.89 3.46
41 42 6.429385 CAGGTGATCCAGAAAATATAGGAAGC 59.571 42.308 0.00 0.00 35.89 3.86
42 43 6.101734 AGGTGATCCAGAAAATATAGGAAGCA 59.898 38.462 0.00 0.00 35.89 3.91
49 50 9.730705 TCCAGAAAATATAGGAAGCATATCTTG 57.269 33.333 0.00 0.00 34.56 3.02
92 93 8.931568 CAATATATCTCATCCATCTGTATCCCA 58.068 37.037 0.00 0.00 0.00 4.37
101 102 3.070159 CCATCTGTATCCCATTCGAGTGT 59.930 47.826 7.19 0.00 0.00 3.55
103 104 2.357952 TCTGTATCCCATTCGAGTGTCG 59.642 50.000 7.19 0.00 42.10 4.35
104 105 1.407618 TGTATCCCATTCGAGTGTCGG 59.592 52.381 7.19 2.20 40.88 4.79
124 131 2.432456 TGGCACGACGCATGACTC 60.432 61.111 0.00 0.00 45.17 3.36
125 132 2.432456 GGCACGACGCATGACTCA 60.432 61.111 0.00 0.00 45.17 3.41
126 133 2.027073 GGCACGACGCATGACTCAA 61.027 57.895 0.00 0.00 45.17 3.02
127 134 1.417592 GCACGACGCATGACTCAAG 59.582 57.895 0.00 0.00 41.79 3.02
133 140 1.078918 CGCATGACTCAAGAGCCCA 60.079 57.895 0.00 0.00 0.00 5.36
149 156 5.574188 AGAGCCCATAAACATTCTTCTGTT 58.426 37.500 0.00 0.00 41.01 3.16
157 164 7.543172 CCATAAACATTCTTCTGTTTGACATGG 59.457 37.037 11.37 11.83 46.11 3.66
167 174 0.601576 TTTGACATGGTCCGGACACG 60.602 55.000 34.40 23.34 40.55 4.49
175 182 0.957395 GGTCCGGACACGTCTGTAGA 60.957 60.000 34.40 0.00 38.78 2.59
194 201 2.092103 AGAGCATCCTCCTTCGAGTAGT 60.092 50.000 0.00 0.00 38.96 2.73
209 216 5.872635 TCGAGTAGTTGTTATTACTCACCG 58.127 41.667 11.01 0.00 43.74 4.94
211 218 6.317140 TCGAGTAGTTGTTATTACTCACCGAT 59.683 38.462 11.01 0.00 43.74 4.18
214 221 9.448294 GAGTAGTTGTTATTACTCACCGATTAG 57.552 37.037 6.75 0.00 43.28 1.73
259 266 1.352622 ACCTGGTTGGGAGAGCACAA 61.353 55.000 0.00 0.00 41.11 3.33
279 286 6.349280 GCACAAGCATACTTCACTTCCAATAA 60.349 38.462 0.00 0.00 41.58 1.40
284 291 9.860898 AAGCATACTTCACTTCCAATAATTTTC 57.139 29.630 0.00 0.00 0.00 2.29
308 315 8.940397 TCCAAGAGGAATAACAAGAAGAAAAT 57.060 30.769 0.00 0.00 42.23 1.82
311 318 9.760660 CAAGAGGAATAACAAGAAGAAAATACG 57.239 33.333 0.00 0.00 0.00 3.06
321 328 6.710744 ACAAGAAGAAAATACGATCCAACTGT 59.289 34.615 0.00 0.00 0.00 3.55
344 351 8.974060 TGTATTCTAGAAACTTGACCAAACTT 57.026 30.769 9.71 0.00 0.00 2.66
348 355 7.781548 TCTAGAAACTTGACCAAACTTACAC 57.218 36.000 0.00 0.00 0.00 2.90
393 420 7.439655 TGGTTATGTAATTGTTGGCAAAGTTTC 59.560 33.333 0.00 0.00 38.21 2.78
401 428 4.992688 TGTTGGCAAAGTTTCAGTAACTG 58.007 39.130 0.00 0.00 46.34 3.16
414 441 3.318275 TCAGTAACTGTCACCTGTGAGTC 59.682 47.826 0.00 0.00 40.75 3.36
415 442 2.293677 AGTAACTGTCACCTGTGAGTCG 59.706 50.000 0.00 0.00 40.75 4.18
416 443 1.112113 AACTGTCACCTGTGAGTCGT 58.888 50.000 0.00 0.00 40.75 4.34
425 452 2.691526 ACCTGTGAGTCGTTGTACTTGA 59.308 45.455 0.00 0.00 0.00 3.02
432 459 6.307077 TGTGAGTCGTTGTACTTGATATTTCG 59.693 38.462 0.00 0.00 0.00 3.46
436 463 6.971184 AGTCGTTGTACTTGATATTTCGTAGG 59.029 38.462 0.00 0.00 0.00 3.18
440 467 8.649841 CGTTGTACTTGATATTTCGTAGGAAAA 58.350 33.333 14.07 5.27 44.76 2.29
446 473 9.893305 ACTTGATATTTCGTAGGAAAACAAAAG 57.107 29.630 14.07 15.73 44.76 2.27
447 474 9.341899 CTTGATATTTCGTAGGAAAACAAAAGG 57.658 33.333 14.07 6.83 44.76 3.11
519 581 2.238521 ACAAATGTGATCCTTTGCGGT 58.761 42.857 10.66 0.00 36.12 5.68
584 666 4.929315 GTTGCAGTGTACAACAATTTCG 57.071 40.909 0.00 0.00 45.35 3.46
686 768 7.652105 GCATGCTGATGATTATCTTGTCATTTT 59.348 33.333 11.37 0.00 35.33 1.82
747 829 1.228094 TGTGTGCCGCTGGATTCAA 60.228 52.632 0.00 0.00 0.00 2.69
751 833 1.599518 TGCCGCTGGATTCAAACGT 60.600 52.632 0.00 0.00 0.00 3.99
755 837 1.202065 CCGCTGGATTCAAACGTCATG 60.202 52.381 0.00 0.00 0.00 3.07
774 862 4.580167 TCATGAGGCATATGCACCTTTAAC 59.420 41.667 28.07 8.95 44.36 2.01
823 917 8.375506 CACTATATAAACCCATCCAAGCTCTAA 58.624 37.037 0.00 0.00 0.00 2.10
905 1042 5.765182 CCATTGAACCATCTATACAAGGGAC 59.235 44.000 0.00 0.00 42.45 4.46
907 1044 6.381498 TTGAACCATCTATACAAGGGACAA 57.619 37.500 0.00 0.00 0.00 3.18
972 1109 7.720442 TGGTAGAACTATCTCATTGTGATCTG 58.280 38.462 4.57 3.20 37.10 2.90
1064 1243 5.159637 TGGCCTCCTAGGTATATTGCTTTA 58.840 41.667 9.08 0.00 37.80 1.85
1065 1244 5.790618 TGGCCTCCTAGGTATATTGCTTTAT 59.209 40.000 9.08 0.00 37.80 1.40
1066 1245 6.963494 TGGCCTCCTAGGTATATTGCTTTATA 59.037 38.462 9.08 0.00 37.80 0.98
1067 1246 7.093024 TGGCCTCCTAGGTATATTGCTTTATAC 60.093 40.741 9.08 7.65 37.80 1.47
1116 1295 3.564218 GATCCCCGGCCTCTGCAT 61.564 66.667 0.00 0.00 40.13 3.96
1117 1296 3.543536 GATCCCCGGCCTCTGCATC 62.544 68.421 0.00 0.00 40.13 3.91
1119 1298 4.559063 CCCCGGCCTCTGCATCAG 62.559 72.222 0.00 0.00 40.13 2.90
1264 1472 7.283354 CACTCCCAAAACTAATATTTCCTCCTC 59.717 40.741 0.00 0.00 0.00 3.71
1269 1477 7.615757 CCAAAACTAATATTTCCTCCTCTGGTT 59.384 37.037 0.00 0.00 0.00 3.67
1312 1520 7.914427 ATAAATACATACTCACTCTGTCCCA 57.086 36.000 0.00 0.00 0.00 4.37
1313 1521 6.620877 AAATACATACTCACTCTGTCCCAA 57.379 37.500 0.00 0.00 0.00 4.12
1314 1522 6.620877 AATACATACTCACTCTGTCCCAAA 57.379 37.500 0.00 0.00 0.00 3.28
1315 1523 4.974645 ACATACTCACTCTGTCCCAAAA 57.025 40.909 0.00 0.00 0.00 2.44
1316 1524 5.505181 ACATACTCACTCTGTCCCAAAAT 57.495 39.130 0.00 0.00 0.00 1.82
1317 1525 6.620877 ACATACTCACTCTGTCCCAAAATA 57.379 37.500 0.00 0.00 0.00 1.40
1318 1526 7.016153 ACATACTCACTCTGTCCCAAAATAA 57.984 36.000 0.00 0.00 0.00 1.40
1319 1527 7.106239 ACATACTCACTCTGTCCCAAAATAAG 58.894 38.462 0.00 0.00 0.00 1.73
1320 1528 5.568620 ACTCACTCTGTCCCAAAATAAGT 57.431 39.130 0.00 0.00 0.00 2.24
1321 1529 5.308825 ACTCACTCTGTCCCAAAATAAGTG 58.691 41.667 0.00 0.00 35.20 3.16
1322 1530 5.163195 ACTCACTCTGTCCCAAAATAAGTGT 60.163 40.000 0.00 0.00 35.37 3.55
1323 1531 5.305585 TCACTCTGTCCCAAAATAAGTGTC 58.694 41.667 0.00 0.00 35.37 3.67
1324 1532 5.071788 TCACTCTGTCCCAAAATAAGTGTCT 59.928 40.000 0.00 0.00 35.37 3.41
1325 1533 5.409826 CACTCTGTCCCAAAATAAGTGTCTC 59.590 44.000 0.00 0.00 0.00 3.36
1326 1534 5.071788 ACTCTGTCCCAAAATAAGTGTCTCA 59.928 40.000 0.00 0.00 0.00 3.27
1327 1535 5.935945 TCTGTCCCAAAATAAGTGTCTCAA 58.064 37.500 0.00 0.00 0.00 3.02
1328 1536 5.763204 TCTGTCCCAAAATAAGTGTCTCAAC 59.237 40.000 0.00 0.00 0.00 3.18
1329 1537 5.690865 TGTCCCAAAATAAGTGTCTCAACT 58.309 37.500 0.00 0.00 0.00 3.16
1330 1538 6.126409 TGTCCCAAAATAAGTGTCTCAACTT 58.874 36.000 0.00 0.00 42.89 2.66
1331 1539 6.605594 TGTCCCAAAATAAGTGTCTCAACTTT 59.394 34.615 0.00 0.00 40.77 2.66
1332 1540 6.918022 GTCCCAAAATAAGTGTCTCAACTTTG 59.082 38.462 0.00 0.00 40.77 2.77
1333 1541 6.605594 TCCCAAAATAAGTGTCTCAACTTTGT 59.394 34.615 0.00 0.00 40.77 2.83
1334 1542 7.776030 TCCCAAAATAAGTGTCTCAACTTTGTA 59.224 33.333 0.00 0.00 40.77 2.41
1335 1543 7.860872 CCCAAAATAAGTGTCTCAACTTTGTAC 59.139 37.037 0.00 0.00 40.77 2.90
1336 1544 8.621286 CCAAAATAAGTGTCTCAACTTTGTACT 58.379 33.333 0.00 0.00 40.77 2.73
1342 1550 8.788325 AAGTGTCTCAACTTTGTACTTACTTT 57.212 30.769 0.00 0.00 37.05 2.66
1343 1551 9.880157 AAGTGTCTCAACTTTGTACTTACTTTA 57.120 29.630 0.00 0.00 37.05 1.85
1344 1552 9.530633 AGTGTCTCAACTTTGTACTTACTTTAG 57.469 33.333 0.00 0.00 0.00 1.85
1345 1553 9.310716 GTGTCTCAACTTTGTACTTACTTTAGT 57.689 33.333 0.00 0.00 0.00 2.24
1367 1575 6.707599 GTACAAAGTGGTACTAAGCTTGAG 57.292 41.667 9.86 5.36 40.34 3.02
1368 1576 5.546621 ACAAAGTGGTACTAAGCTTGAGA 57.453 39.130 9.86 0.00 0.00 3.27
1369 1577 5.298347 ACAAAGTGGTACTAAGCTTGAGAC 58.702 41.667 9.86 3.57 0.00 3.36
1370 1578 5.163343 ACAAAGTGGTACTAAGCTTGAGACA 60.163 40.000 9.86 0.00 0.00 3.41
1371 1579 4.522722 AGTGGTACTAAGCTTGAGACAC 57.477 45.455 9.86 11.45 0.00 3.67
1372 1580 4.153411 AGTGGTACTAAGCTTGAGACACT 58.847 43.478 9.86 13.44 32.37 3.55
1373 1581 4.589374 AGTGGTACTAAGCTTGAGACACTT 59.411 41.667 9.86 0.53 33.31 3.16
1374 1582 5.773680 AGTGGTACTAAGCTTGAGACACTTA 59.226 40.000 9.86 0.00 33.31 2.24
1375 1583 6.437793 AGTGGTACTAAGCTTGAGACACTTAT 59.562 38.462 9.86 0.00 33.31 1.73
1376 1584 7.038941 AGTGGTACTAAGCTTGAGACACTTATT 60.039 37.037 9.86 0.00 33.31 1.40
1377 1585 7.603024 GTGGTACTAAGCTTGAGACACTTATTT 59.397 37.037 9.86 0.00 0.00 1.40
1378 1586 8.154856 TGGTACTAAGCTTGAGACACTTATTTT 58.845 33.333 9.86 0.00 0.00 1.82
1379 1587 8.443937 GGTACTAAGCTTGAGACACTTATTTTG 58.556 37.037 9.86 0.00 0.00 2.44
1380 1588 7.440523 ACTAAGCTTGAGACACTTATTTTGG 57.559 36.000 9.86 0.00 0.00 3.28
1381 1589 5.712152 AAGCTTGAGACACTTATTTTGGG 57.288 39.130 0.00 0.00 0.00 4.12
1382 1590 4.985538 AGCTTGAGACACTTATTTTGGGA 58.014 39.130 0.00 0.00 0.00 4.37
1383 1591 4.762251 AGCTTGAGACACTTATTTTGGGAC 59.238 41.667 0.00 0.00 0.00 4.46
1384 1592 4.378459 GCTTGAGACACTTATTTTGGGACG 60.378 45.833 0.00 0.00 0.00 4.79
1385 1593 3.670625 TGAGACACTTATTTTGGGACGG 58.329 45.455 0.00 0.00 0.00 4.79
1386 1594 3.325425 TGAGACACTTATTTTGGGACGGA 59.675 43.478 0.00 0.00 0.00 4.69
1387 1595 3.933332 GAGACACTTATTTTGGGACGGAG 59.067 47.826 0.00 0.00 0.00 4.63
1388 1596 3.007635 GACACTTATTTTGGGACGGAGG 58.992 50.000 0.00 0.00 0.00 4.30
1389 1597 2.290705 ACACTTATTTTGGGACGGAGGG 60.291 50.000 0.00 0.00 0.00 4.30
1390 1598 2.026636 CACTTATTTTGGGACGGAGGGA 60.027 50.000 0.00 0.00 0.00 4.20
1391 1599 2.238898 ACTTATTTTGGGACGGAGGGAG 59.761 50.000 0.00 0.00 0.00 4.30
1399 1607 2.090943 TGGGACGGAGGGAGTACATATT 60.091 50.000 0.00 0.00 0.00 1.28
1447 1655 2.228059 GGATGCATGTGATCCTTCCTG 58.772 52.381 2.46 0.00 37.07 3.86
1457 1665 5.441500 TGTGATCCTTCCTGTTTTGTGTAA 58.558 37.500 0.00 0.00 0.00 2.41
1472 1681 7.386848 TGTTTTGTGTAAGCTAGTTAGTGATCC 59.613 37.037 0.00 0.00 0.00 3.36
1473 1682 6.852420 TTGTGTAAGCTAGTTAGTGATCCT 57.148 37.500 0.00 0.00 0.00 3.24
1474 1683 6.852420 TGTGTAAGCTAGTTAGTGATCCTT 57.148 37.500 0.00 0.00 0.00 3.36
1494 1703 1.423921 TCTTCCTCTTTTGTCCCCCAC 59.576 52.381 0.00 0.00 0.00 4.61
1508 1717 1.134431 CCCCCACCAGCATATTTTTGC 60.134 52.381 0.00 0.00 43.09 3.68
1527 1736 9.612066 ATTTTTGCTATTCTTTTCTTTCACCAA 57.388 25.926 0.00 0.00 0.00 3.67
1528 1737 9.612066 TTTTTGCTATTCTTTTCTTTCACCAAT 57.388 25.926 0.00 0.00 0.00 3.16
1530 1739 9.912634 TTTGCTATTCTTTTCTTTCACCAATAG 57.087 29.630 0.00 0.00 0.00 1.73
1531 1740 8.635765 TGCTATTCTTTTCTTTCACCAATAGT 57.364 30.769 0.00 0.00 0.00 2.12
1546 1755 4.039730 ACCAATAGTGATCCATCTTCCTCG 59.960 45.833 0.00 0.00 0.00 4.63
1547 1756 4.039730 CCAATAGTGATCCATCTTCCTCGT 59.960 45.833 0.00 0.00 0.00 4.18
1548 1757 5.226396 CAATAGTGATCCATCTTCCTCGTC 58.774 45.833 0.00 0.00 0.00 4.20
1549 1758 2.035632 AGTGATCCATCTTCCTCGTCC 58.964 52.381 0.00 0.00 0.00 4.79
1550 1759 1.069358 GTGATCCATCTTCCTCGTCCC 59.931 57.143 0.00 0.00 0.00 4.46
1551 1760 0.682292 GATCCATCTTCCTCGTCCCC 59.318 60.000 0.00 0.00 0.00 4.81
1552 1761 0.764752 ATCCATCTTCCTCGTCCCCC 60.765 60.000 0.00 0.00 0.00 5.40
1553 1762 1.689233 CCATCTTCCTCGTCCCCCA 60.689 63.158 0.00 0.00 0.00 4.96
1554 1763 1.271840 CCATCTTCCTCGTCCCCCAA 61.272 60.000 0.00 0.00 0.00 4.12
1555 1764 0.839946 CATCTTCCTCGTCCCCCAAT 59.160 55.000 0.00 0.00 0.00 3.16
1556 1765 1.132500 ATCTTCCTCGTCCCCCAATC 58.868 55.000 0.00 0.00 0.00 2.67
1557 1766 0.042731 TCTTCCTCGTCCCCCAATCT 59.957 55.000 0.00 0.00 0.00 2.40
1558 1767 0.466124 CTTCCTCGTCCCCCAATCTC 59.534 60.000 0.00 0.00 0.00 2.75
1559 1768 0.981277 TTCCTCGTCCCCCAATCTCC 60.981 60.000 0.00 0.00 0.00 3.71
1560 1769 1.383248 CCTCGTCCCCCAATCTCCT 60.383 63.158 0.00 0.00 0.00 3.69
1561 1770 1.403687 CCTCGTCCCCCAATCTCCTC 61.404 65.000 0.00 0.00 0.00 3.71
1562 1771 1.382695 TCGTCCCCCAATCTCCTCC 60.383 63.158 0.00 0.00 0.00 4.30
1563 1772 2.444256 CGTCCCCCAATCTCCTCCC 61.444 68.421 0.00 0.00 0.00 4.30
1564 1773 2.079288 GTCCCCCAATCTCCTCCCC 61.079 68.421 0.00 0.00 0.00 4.81
1578 1787 4.079212 TCTCCTCCCCCAATTATTTTGAGG 60.079 45.833 0.00 0.00 39.38 3.86
1579 1788 3.600617 TCCTCCCCCAATTATTTTGAGGT 59.399 43.478 0.00 0.00 39.13 3.85
1580 1789 3.706086 CCTCCCCCAATTATTTTGAGGTG 59.294 47.826 0.00 0.00 34.55 4.00
1581 1790 4.352893 CTCCCCCAATTATTTTGAGGTGT 58.647 43.478 0.00 0.00 0.00 4.16
1582 1791 5.515106 CTCCCCCAATTATTTTGAGGTGTA 58.485 41.667 0.00 0.00 0.00 2.90
1583 1792 5.905088 TCCCCCAATTATTTTGAGGTGTAA 58.095 37.500 0.00 0.00 0.00 2.41
1584 1793 6.323737 TCCCCCAATTATTTTGAGGTGTAAA 58.676 36.000 0.00 0.00 0.00 2.01
1633 1887 2.372172 AGGTGAGAAAAGGGAACGACAT 59.628 45.455 0.00 0.00 0.00 3.06
1648 1902 6.820152 GGGAACGACATATGTAAACTAAAGGT 59.180 38.462 8.71 0.00 0.00 3.50
1652 1906 8.064336 ACGACATATGTAAACTAAAGGTCTCT 57.936 34.615 8.71 0.00 0.00 3.10
1852 2126 3.529533 CCACTGTAAGCCTCTTGATCAG 58.470 50.000 0.00 0.00 37.60 2.90
1871 2190 5.201713 TCAGACTCAACATCGTTTCTCTT 57.798 39.130 0.00 0.00 0.00 2.85
1885 2207 8.713271 CATCGTTTCTCTTTCTAGCTTAGTTTT 58.287 33.333 0.00 0.00 0.00 2.43
1887 2209 9.408069 TCGTTTCTCTTTCTAGCTTAGTTTTAG 57.592 33.333 0.00 0.00 0.00 1.85
1929 2283 2.575108 CATGTGATGCAGGCCAACT 58.425 52.632 5.01 0.00 0.00 3.16
1932 2286 2.284754 TGTGATGCAGGCCAACTTTA 57.715 45.000 5.01 0.00 0.00 1.85
2001 2356 2.031163 GTGGTGGCGCTCTTCAGT 59.969 61.111 7.64 0.00 0.00 3.41
2040 2395 1.808799 CGCGCTGCTCAAGTCTGAT 60.809 57.895 5.56 0.00 0.00 2.90
2070 2425 0.904649 TCATCACCATCAACTCCGCT 59.095 50.000 0.00 0.00 0.00 5.52
2139 2494 1.270550 CCAAAGCAAGCCAAGGTACTG 59.729 52.381 0.00 0.00 40.86 2.74
2289 2669 1.746470 CATGGATGCAGCTCTTCACA 58.254 50.000 0.22 0.00 0.00 3.58
2292 2672 0.675837 GGATGCAGCTCTTCACAGCA 60.676 55.000 0.22 0.00 42.40 4.41
2397 2777 1.603455 CATGCTCGGGTGGGTTTGT 60.603 57.895 0.00 0.00 0.00 2.83
2493 2884 5.835257 AGTGTTTGTTTGTTGATCCATGAG 58.165 37.500 0.00 0.00 0.00 2.90
2696 3104 8.879342 AAATCTCTCGGTTCATCATAACTTAG 57.121 34.615 0.00 0.00 0.00 2.18
2761 3187 0.958091 CCAACATTCTTGGGTTCGCA 59.042 50.000 0.00 0.00 35.96 5.10
2791 3217 0.742990 TTCAAATGGGGCTCTACGCG 60.743 55.000 3.53 3.53 40.44 6.01
2799 3225 2.478890 GGCTCTACGCGCTCTACCA 61.479 63.158 5.73 0.00 40.44 3.25
2803 3229 0.883153 TCTACGCGCTCTACCACAAA 59.117 50.000 5.73 0.00 0.00 2.83
2848 3289 0.107557 AGGTGCACGATGATGATGCA 60.108 50.000 11.45 0.00 46.73 3.96
2929 3397 2.355197 CTCAACACGCACAATCCCATA 58.645 47.619 0.00 0.00 0.00 2.74
2932 3400 2.945008 CAACACGCACAATCCCATAGAT 59.055 45.455 0.00 0.00 36.48 1.98
2933 3401 3.281727 ACACGCACAATCCCATAGATT 57.718 42.857 0.00 0.00 46.54 2.40
2946 3414 2.374504 CCATAGATTCAGGGATGCCACT 59.625 50.000 5.86 0.00 0.00 4.00
3042 3510 0.179161 CACGTCGAGCAAGTCTAGGG 60.179 60.000 0.00 0.00 0.00 3.53
3130 3598 3.951775 AGCTATAGGGAGAGAAATGCG 57.048 47.619 1.04 0.00 0.00 4.73
3165 3634 2.927477 GCGATTTCCACTATCACGTTCA 59.073 45.455 0.00 0.00 0.00 3.18
3179 3648 4.490743 TCACGTTCAATTAGATGCTCGAA 58.509 39.130 0.00 0.00 0.00 3.71
3196 3665 6.880484 TGCTCGAACCAGTTATTTTATCCTA 58.120 36.000 0.00 0.00 0.00 2.94
3233 3702 7.200434 AGTATGTTCATCTACCACTTCCATT 57.800 36.000 0.00 0.00 0.00 3.16
3234 3703 7.050377 AGTATGTTCATCTACCACTTCCATTG 58.950 38.462 0.00 0.00 0.00 2.82
3235 3704 5.241403 TGTTCATCTACCACTTCCATTGT 57.759 39.130 0.00 0.00 0.00 2.71
3236 3705 5.003160 TGTTCATCTACCACTTCCATTGTG 58.997 41.667 0.00 0.00 35.39 3.33
3240 3709 3.277133 CCACTTCCATTGTGGCCG 58.723 61.111 0.00 0.00 46.73 6.13
3241 3710 1.603455 CCACTTCCATTGTGGCCGT 60.603 57.895 0.00 0.00 46.73 5.68
3242 3711 0.322098 CCACTTCCATTGTGGCCGTA 60.322 55.000 0.00 0.00 46.73 4.02
3243 3712 1.681780 CCACTTCCATTGTGGCCGTAT 60.682 52.381 0.00 0.00 46.73 3.06
3244 3713 1.401552 CACTTCCATTGTGGCCGTATG 59.598 52.381 0.00 1.08 37.47 2.39
3245 3714 0.381801 CTTCCATTGTGGCCGTATGC 59.618 55.000 0.00 0.00 37.47 3.14
3246 3715 0.322906 TTCCATTGTGGCCGTATGCA 60.323 50.000 0.00 0.00 43.89 3.96
3247 3716 0.106769 TCCATTGTGGCCGTATGCAT 60.107 50.000 3.79 3.79 43.89 3.96
3248 3717 0.311790 CCATTGTGGCCGTATGCATC 59.688 55.000 0.19 0.00 43.89 3.91
3249 3718 0.041047 CATTGTGGCCGTATGCATCG 60.041 55.000 0.19 7.03 43.89 3.84
3250 3719 0.463654 ATTGTGGCCGTATGCATCGT 60.464 50.000 0.19 0.00 43.89 3.73
3251 3720 0.675208 TTGTGGCCGTATGCATCGTT 60.675 50.000 0.19 0.00 43.89 3.85
3252 3721 0.675208 TGTGGCCGTATGCATCGTTT 60.675 50.000 0.19 0.00 43.89 3.60
3253 3722 0.450184 GTGGCCGTATGCATCGTTTT 59.550 50.000 0.19 0.00 43.89 2.43
3254 3723 0.449786 TGGCCGTATGCATCGTTTTG 59.550 50.000 0.19 0.00 43.89 2.44
3255 3724 0.730265 GGCCGTATGCATCGTTTTGA 59.270 50.000 0.19 0.00 43.89 2.69
3256 3725 1.333619 GGCCGTATGCATCGTTTTGAT 59.666 47.619 0.19 0.00 43.89 2.57
3265 3734 1.098050 ATCGTTTTGATGCAGAGGCC 58.902 50.000 0.00 0.00 40.13 5.19
3266 3735 0.960364 TCGTTTTGATGCAGAGGCCC 60.960 55.000 0.00 0.00 40.13 5.80
3267 3736 1.508088 GTTTTGATGCAGAGGCCCG 59.492 57.895 0.00 0.00 40.13 6.13
3268 3737 1.678635 TTTTGATGCAGAGGCCCGG 60.679 57.895 0.00 0.00 40.13 5.73
3269 3738 3.643595 TTTGATGCAGAGGCCCGGG 62.644 63.158 19.09 19.09 40.13 5.73
3271 3740 3.564218 GATGCAGAGGCCCGGGAT 61.564 66.667 29.31 12.59 40.13 3.85
3272 3741 3.543536 GATGCAGAGGCCCGGGATC 62.544 68.421 29.31 21.63 40.13 3.36
3273 3742 4.804420 TGCAGAGGCCCGGGATCT 62.804 66.667 29.31 23.72 40.13 2.75
3274 3743 3.934962 GCAGAGGCCCGGGATCTC 61.935 72.222 29.31 27.95 0.00 2.75
3275 3744 3.237741 CAGAGGCCCGGGATCTCC 61.238 72.222 29.31 16.78 0.00 3.71
3442 3915 4.814294 GCGGCCACTCGGATTCGT 62.814 66.667 2.24 0.00 37.69 3.85
3485 3958 5.590530 ATTCCTAAGAGCAGTGTGTCTAG 57.409 43.478 0.00 0.00 0.00 2.43
3717 4210 4.242475 CAAGCAAGAGTATTGTGACGGTA 58.758 43.478 0.00 0.00 0.00 4.02
3723 4216 6.128391 GCAAGAGTATTGTGACGGTAAATTGA 60.128 38.462 0.00 0.00 0.00 2.57
3815 4311 1.686110 CCCTAGGCTCCTCGTGGTT 60.686 63.158 2.05 0.00 34.23 3.67
3821 4317 1.536943 GGCTCCTCGTGGTTGAGAGT 61.537 60.000 2.99 0.00 38.28 3.24
3974 4471 2.986290 CACCAGGCCACCGTCATA 59.014 61.111 5.01 0.00 0.00 2.15
3986 4484 2.812499 GTCATAGGCGGCTCCGAA 59.188 61.111 17.67 0.00 42.83 4.30
3992 4490 2.572095 TAGGCGGCTCCGAATGTGTG 62.572 60.000 17.67 0.00 42.83 3.82
3995 4493 4.166011 GGCTCCGAATGTGTGCGC 62.166 66.667 0.00 0.00 0.00 6.09
4008 4506 3.838271 TGCGCGATGTCCCTCTCC 61.838 66.667 12.10 0.00 0.00 3.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 7.148340 AACTAACAGTTCTGCAAGATATGCTTC 60.148 37.037 1.83 0.00 46.36 3.86
38 39 6.656693 AACTAACAGTTCTGCAAGATATGCTT 59.343 34.615 1.83 0.00 46.36 3.91
39 40 6.176183 AACTAACAGTTCTGCAAGATATGCT 58.824 36.000 1.83 0.00 46.36 3.79
40 41 6.428385 AACTAACAGTTCTGCAAGATATGC 57.572 37.500 0.00 0.00 46.36 3.14
41 42 7.119699 TGGAAACTAACAGTTCTGCAAGATATG 59.880 37.037 0.00 0.00 46.36 1.78
42 43 7.168219 TGGAAACTAACAGTTCTGCAAGATAT 58.832 34.615 0.00 0.00 46.36 1.63
48 49 9.109393 GATATATTGGAAACTAACAGTTCTGCA 57.891 33.333 0.00 0.00 37.47 4.41
49 50 9.331282 AGATATATTGGAAACTAACAGTTCTGC 57.669 33.333 0.00 0.00 37.47 4.26
78 79 3.321968 CACTCGAATGGGATACAGATGGA 59.678 47.826 0.00 0.00 39.74 3.41
92 93 2.126071 CCACGCCGACACTCGAAT 60.126 61.111 0.00 0.00 43.74 3.34
112 119 1.416813 GGCTCTTGAGTCATGCGTCG 61.417 60.000 0.00 0.00 0.00 5.12
114 121 1.078848 GGGCTCTTGAGTCATGCGT 60.079 57.895 4.58 0.00 0.00 5.24
115 122 0.463295 ATGGGCTCTTGAGTCATGCG 60.463 55.000 4.58 0.00 0.00 4.73
124 131 5.416952 ACAGAAGAATGTTTATGGGCTCTTG 59.583 40.000 0.00 0.00 0.00 3.02
125 132 5.574188 ACAGAAGAATGTTTATGGGCTCTT 58.426 37.500 0.00 0.00 0.00 2.85
126 133 5.184892 ACAGAAGAATGTTTATGGGCTCT 57.815 39.130 0.00 0.00 0.00 4.09
127 134 5.904362 AACAGAAGAATGTTTATGGGCTC 57.096 39.130 0.00 0.00 40.47 4.70
149 156 1.005512 CGTGTCCGGACCATGTCAA 60.006 57.895 31.19 8.39 33.68 3.18
157 164 0.447011 CTCTACAGACGTGTCCGGAC 59.553 60.000 28.17 28.17 38.19 4.79
167 174 2.034053 CGAAGGAGGATGCTCTACAGAC 59.966 54.545 14.40 0.00 33.13 3.51
175 182 2.428890 CAACTACTCGAAGGAGGATGCT 59.571 50.000 0.00 0.00 44.93 3.79
194 201 5.426185 ACCCCTAATCGGTGAGTAATAACAA 59.574 40.000 0.00 0.00 30.39 2.83
224 231 0.417841 AGGTGACTATGGTCCCCACT 59.582 55.000 13.03 0.61 41.49 4.00
234 241 2.472029 CTCTCCCAACCAGGTGACTAT 58.528 52.381 0.00 0.00 40.21 2.12
243 250 1.228245 GCTTGTGCTCTCCCAACCA 60.228 57.895 0.00 0.00 36.03 3.67
259 266 8.470002 GGAAAATTATTGGAAGTGAAGTATGCT 58.530 33.333 0.00 0.00 0.00 3.79
308 315 8.289939 AGTTTCTAGAATACAGTTGGATCGTA 57.710 34.615 5.89 0.00 0.00 3.43
311 318 8.874816 GTCAAGTTTCTAGAATACAGTTGGATC 58.125 37.037 17.35 9.09 0.00 3.36
318 325 8.608844 AGTTTGGTCAAGTTTCTAGAATACAG 57.391 34.615 5.89 5.32 0.00 2.74
327 334 5.708230 TGTGTGTAAGTTTGGTCAAGTTTCT 59.292 36.000 0.00 0.00 30.16 2.52
373 384 5.971763 ACTGAAACTTTGCCAACAATTACA 58.028 33.333 0.00 0.00 35.21 2.41
393 420 3.643763 GACTCACAGGTGACAGTTACTG 58.356 50.000 11.21 11.21 35.46 2.74
401 428 2.034305 AGTACAACGACTCACAGGTGAC 59.966 50.000 0.00 0.00 35.46 3.67
414 441 7.745022 TTCCTACGAAATATCAAGTACAACG 57.255 36.000 0.00 0.00 0.00 4.10
415 442 9.750882 GTTTTCCTACGAAATATCAAGTACAAC 57.249 33.333 0.00 0.00 37.81 3.32
416 443 9.491675 TGTTTTCCTACGAAATATCAAGTACAA 57.508 29.630 0.00 0.00 37.81 2.41
425 452 9.471084 CAAACCTTTTGTTTTCCTACGAAATAT 57.529 29.630 0.00 0.00 44.80 1.28
432 459 8.581578 TGATATCCAAACCTTTTGTTTTCCTAC 58.418 33.333 0.00 0.00 44.80 3.18
465 493 8.739972 CCAACTAGCCTTGTGTCTAATTAAATT 58.260 33.333 0.00 0.00 0.00 1.82
472 533 3.244582 TCCCAACTAGCCTTGTGTCTAA 58.755 45.455 0.00 0.00 0.00 2.10
584 666 5.284079 CCAATTGCATGGATTTACTACAGC 58.716 41.667 0.00 0.00 43.54 4.40
612 694 5.278561 CGGTACACTCTTTCTCTCTCAGTTT 60.279 44.000 0.00 0.00 0.00 2.66
686 768 0.820871 GTCATGGGGCCGCATTAAAA 59.179 50.000 31.20 14.91 0.00 1.52
747 829 1.942657 GTGCATATGCCTCATGACGTT 59.057 47.619 24.54 0.00 41.18 3.99
751 833 3.301794 AAAGGTGCATATGCCTCATGA 57.698 42.857 24.54 1.87 41.18 3.07
755 837 3.316308 CCAGTTAAAGGTGCATATGCCTC 59.684 47.826 24.54 16.64 41.18 4.70
907 1044 9.566432 GGATGATAGTTATGTTTCAAGATTCCT 57.434 33.333 0.00 0.00 0.00 3.36
919 1056 7.284489 GCTAGCTAGCTAGGATGATAGTTATGT 59.716 40.741 39.60 9.37 45.62 2.29
921 1058 7.817418 GCTAGCTAGCTAGGATGATAGTTAT 57.183 40.000 39.60 10.05 45.62 1.89
972 1109 7.416022 CAAGATCTTAATTGGAGTTGATGAGC 58.584 38.462 7.86 0.00 0.00 4.26
1099 1278 3.543536 GATGCAGAGGCCGGGGATC 62.544 68.421 2.18 9.34 40.13 3.36
1100 1279 3.564218 GATGCAGAGGCCGGGGAT 61.564 66.667 2.18 0.00 40.13 3.85
1102 1281 4.559063 CTGATGCAGAGGCCGGGG 62.559 72.222 2.18 0.00 40.13 5.73
1104 1283 4.478371 TGCTGATGCAGAGGCCGG 62.478 66.667 0.00 0.00 45.31 6.13
1115 1294 5.127682 TGAGGTATATATGCATCGTGCTGAT 59.872 40.000 0.19 0.00 45.31 2.90
1116 1295 4.462483 TGAGGTATATATGCATCGTGCTGA 59.538 41.667 0.19 0.00 45.31 4.26
1117 1296 4.747810 TGAGGTATATATGCATCGTGCTG 58.252 43.478 0.19 0.00 45.31 4.41
1118 1297 5.405935 TTGAGGTATATATGCATCGTGCT 57.594 39.130 0.19 0.00 45.31 4.40
1119 1298 7.203218 TCTATTGAGGTATATATGCATCGTGC 58.797 38.462 0.19 3.44 45.29 5.34
1120 1299 9.189723 CATCTATTGAGGTATATATGCATCGTG 57.810 37.037 0.19 2.17 0.00 4.35
1121 1300 7.869937 GCATCTATTGAGGTATATATGCATCGT 59.130 37.037 0.19 0.00 38.98 3.73
1122 1301 8.087136 AGCATCTATTGAGGTATATATGCATCG 58.913 37.037 0.19 0.00 40.38 3.84
1123 1302 9.775854 AAGCATCTATTGAGGTATATATGCATC 57.224 33.333 0.19 8.33 40.38 3.91
1125 1304 9.964354 AAAAGCATCTATTGAGGTATATATGCA 57.036 29.630 13.13 0.00 40.38 3.96
1166 1371 7.872113 AATGGCCAGAAATAAGAACTCTTAG 57.128 36.000 13.05 0.00 41.24 2.18
1212 1419 1.739067 AGTTCTCGCAAACCATAGCC 58.261 50.000 0.00 0.00 0.00 3.93
1213 1420 6.598753 TTATTAGTTCTCGCAAACCATAGC 57.401 37.500 0.00 0.00 0.00 2.97
1214 1421 8.276325 GTGATTATTAGTTCTCGCAAACCATAG 58.724 37.037 0.00 0.00 0.00 2.23
1264 1472 3.877559 TGGATGCTCAGAATACAACCAG 58.122 45.455 0.00 0.00 32.04 4.00
1297 1505 6.042781 ACACTTATTTTGGGACAGAGTGAGTA 59.957 38.462 7.50 0.00 42.39 2.59
1298 1506 5.163195 ACACTTATTTTGGGACAGAGTGAGT 60.163 40.000 7.50 0.00 42.39 3.41
1299 1507 5.308825 ACACTTATTTTGGGACAGAGTGAG 58.691 41.667 7.50 0.00 42.39 3.51
1300 1508 5.071788 AGACACTTATTTTGGGACAGAGTGA 59.928 40.000 7.50 0.00 42.39 3.41
1301 1509 5.308825 AGACACTTATTTTGGGACAGAGTG 58.691 41.667 0.00 0.00 42.39 3.51
1302 1510 5.071788 TGAGACACTTATTTTGGGACAGAGT 59.928 40.000 0.00 0.00 42.39 3.24
1303 1511 5.551233 TGAGACACTTATTTTGGGACAGAG 58.449 41.667 0.00 0.00 42.39 3.35
1304 1512 5.560722 TGAGACACTTATTTTGGGACAGA 57.439 39.130 0.00 0.00 42.39 3.41
1305 1513 5.765182 AGTTGAGACACTTATTTTGGGACAG 59.235 40.000 0.00 0.00 42.39 3.51
1306 1514 5.690865 AGTTGAGACACTTATTTTGGGACA 58.309 37.500 0.00 0.00 0.00 4.02
1307 1515 6.635030 AAGTTGAGACACTTATTTTGGGAC 57.365 37.500 0.00 0.00 35.10 4.46
1308 1516 6.605594 ACAAAGTTGAGACACTTATTTTGGGA 59.394 34.615 0.00 0.00 35.87 4.37
1309 1517 6.805713 ACAAAGTTGAGACACTTATTTTGGG 58.194 36.000 0.00 0.00 35.87 4.12
1310 1518 8.621286 AGTACAAAGTTGAGACACTTATTTTGG 58.379 33.333 0.00 0.00 35.87 3.28
1316 1524 9.880157 AAAGTAAGTACAAAGTTGAGACACTTA 57.120 29.630 0.00 3.91 35.87 2.24
1317 1525 8.788325 AAAGTAAGTACAAAGTTGAGACACTT 57.212 30.769 0.00 4.72 38.74 3.16
1318 1526 9.530633 CTAAAGTAAGTACAAAGTTGAGACACT 57.469 33.333 0.00 0.00 0.00 3.55
1319 1527 9.310716 ACTAAAGTAAGTACAAAGTTGAGACAC 57.689 33.333 0.00 0.00 0.00 3.67
1344 1552 6.365518 GTCTCAAGCTTAGTACCACTTTGTAC 59.634 42.308 0.00 0.00 41.13 2.90
1345 1553 6.041182 TGTCTCAAGCTTAGTACCACTTTGTA 59.959 38.462 0.00 0.00 0.00 2.41
1346 1554 5.163343 TGTCTCAAGCTTAGTACCACTTTGT 60.163 40.000 0.00 0.00 0.00 2.83
1347 1555 5.177696 GTGTCTCAAGCTTAGTACCACTTTG 59.822 44.000 0.00 0.00 0.00 2.77
1348 1556 5.070580 AGTGTCTCAAGCTTAGTACCACTTT 59.929 40.000 0.00 0.00 0.00 2.66
1349 1557 4.589374 AGTGTCTCAAGCTTAGTACCACTT 59.411 41.667 0.00 0.00 0.00 3.16
1350 1558 4.153411 AGTGTCTCAAGCTTAGTACCACT 58.847 43.478 0.00 5.45 0.00 4.00
1351 1559 4.522722 AGTGTCTCAAGCTTAGTACCAC 57.477 45.455 0.00 3.09 0.00 4.16
1352 1560 6.852420 ATAAGTGTCTCAAGCTTAGTACCA 57.148 37.500 0.00 0.00 0.00 3.25
1353 1561 8.443937 CAAAATAAGTGTCTCAAGCTTAGTACC 58.556 37.037 0.00 0.00 0.00 3.34
1354 1562 8.443937 CCAAAATAAGTGTCTCAAGCTTAGTAC 58.556 37.037 0.00 0.00 0.00 2.73
1355 1563 7.606456 CCCAAAATAAGTGTCTCAAGCTTAGTA 59.394 37.037 0.00 0.00 0.00 1.82
1356 1564 6.431234 CCCAAAATAAGTGTCTCAAGCTTAGT 59.569 38.462 0.00 0.00 0.00 2.24
1357 1565 6.655003 TCCCAAAATAAGTGTCTCAAGCTTAG 59.345 38.462 0.00 0.00 0.00 2.18
1358 1566 6.430000 GTCCCAAAATAAGTGTCTCAAGCTTA 59.570 38.462 0.00 0.00 0.00 3.09
1359 1567 5.241728 GTCCCAAAATAAGTGTCTCAAGCTT 59.758 40.000 0.00 0.00 0.00 3.74
1360 1568 4.762251 GTCCCAAAATAAGTGTCTCAAGCT 59.238 41.667 0.00 0.00 0.00 3.74
1361 1569 4.378459 CGTCCCAAAATAAGTGTCTCAAGC 60.378 45.833 0.00 0.00 0.00 4.01
1362 1570 4.154195 CCGTCCCAAAATAAGTGTCTCAAG 59.846 45.833 0.00 0.00 0.00 3.02
1363 1571 4.069304 CCGTCCCAAAATAAGTGTCTCAA 58.931 43.478 0.00 0.00 0.00 3.02
1364 1572 3.325425 TCCGTCCCAAAATAAGTGTCTCA 59.675 43.478 0.00 0.00 0.00 3.27
1365 1573 3.933332 CTCCGTCCCAAAATAAGTGTCTC 59.067 47.826 0.00 0.00 0.00 3.36
1366 1574 3.307480 CCTCCGTCCCAAAATAAGTGTCT 60.307 47.826 0.00 0.00 0.00 3.41
1367 1575 3.007635 CCTCCGTCCCAAAATAAGTGTC 58.992 50.000 0.00 0.00 0.00 3.67
1368 1576 2.290705 CCCTCCGTCCCAAAATAAGTGT 60.291 50.000 0.00 0.00 0.00 3.55
1369 1577 2.026636 TCCCTCCGTCCCAAAATAAGTG 60.027 50.000 0.00 0.00 0.00 3.16
1370 1578 2.238898 CTCCCTCCGTCCCAAAATAAGT 59.761 50.000 0.00 0.00 0.00 2.24
1371 1579 2.238898 ACTCCCTCCGTCCCAAAATAAG 59.761 50.000 0.00 0.00 0.00 1.73
1372 1580 2.271777 ACTCCCTCCGTCCCAAAATAA 58.728 47.619 0.00 0.00 0.00 1.40
1373 1581 1.961133 ACTCCCTCCGTCCCAAAATA 58.039 50.000 0.00 0.00 0.00 1.40
1374 1582 1.558294 GTACTCCCTCCGTCCCAAAAT 59.442 52.381 0.00 0.00 0.00 1.82
1375 1583 0.978907 GTACTCCCTCCGTCCCAAAA 59.021 55.000 0.00 0.00 0.00 2.44
1376 1584 0.178926 TGTACTCCCTCCGTCCCAAA 60.179 55.000 0.00 0.00 0.00 3.28
1377 1585 0.042131 ATGTACTCCCTCCGTCCCAA 59.958 55.000 0.00 0.00 0.00 4.12
1378 1586 0.928505 TATGTACTCCCTCCGTCCCA 59.071 55.000 0.00 0.00 0.00 4.37
1379 1587 2.305858 ATATGTACTCCCTCCGTCCC 57.694 55.000 0.00 0.00 0.00 4.46
1380 1588 4.321824 GCTAAATATGTACTCCCTCCGTCC 60.322 50.000 0.00 0.00 0.00 4.79
1381 1589 4.523558 AGCTAAATATGTACTCCCTCCGTC 59.476 45.833 0.00 0.00 0.00 4.79
1382 1590 4.481072 AGCTAAATATGTACTCCCTCCGT 58.519 43.478 0.00 0.00 0.00 4.69
1383 1591 5.711036 ACTAGCTAAATATGTACTCCCTCCG 59.289 44.000 0.00 0.00 0.00 4.63
1384 1592 7.541916 AACTAGCTAAATATGTACTCCCTCC 57.458 40.000 0.00 0.00 0.00 4.30
1385 1593 9.299465 ACTAACTAGCTAAATATGTACTCCCTC 57.701 37.037 0.00 0.00 0.00 4.30
1386 1594 9.080097 CACTAACTAGCTAAATATGTACTCCCT 57.920 37.037 0.00 0.00 0.00 4.20
1387 1595 7.813627 GCACTAACTAGCTAAATATGTACTCCC 59.186 40.741 0.00 0.00 0.00 4.30
1388 1596 7.537991 CGCACTAACTAGCTAAATATGTACTCC 59.462 40.741 0.00 0.00 0.00 3.85
1389 1597 7.537991 CCGCACTAACTAGCTAAATATGTACTC 59.462 40.741 0.00 0.00 0.00 2.59
1390 1598 7.230108 TCCGCACTAACTAGCTAAATATGTACT 59.770 37.037 0.00 0.00 0.00 2.73
1391 1599 7.365741 TCCGCACTAACTAGCTAAATATGTAC 58.634 38.462 0.00 0.00 0.00 2.90
1399 1607 3.454375 GCAATCCGCACTAACTAGCTAA 58.546 45.455 0.00 0.00 41.79 3.09
1447 1655 7.603024 AGGATCACTAACTAGCTTACACAAAAC 59.397 37.037 0.00 0.00 0.00 2.43
1457 1665 5.524535 AGGAAGAAGGATCACTAACTAGCT 58.475 41.667 0.00 0.00 0.00 3.32
1472 1681 2.108250 TGGGGGACAAAAGAGGAAGAAG 59.892 50.000 0.00 0.00 0.00 2.85
1473 1682 2.140224 TGGGGGACAAAAGAGGAAGAA 58.860 47.619 0.00 0.00 0.00 2.52
1474 1683 1.423921 GTGGGGGACAAAAGAGGAAGA 59.576 52.381 0.00 0.00 0.00 2.87
1522 1731 5.301835 AGGAAGATGGATCACTATTGGTG 57.698 43.478 0.00 0.00 46.60 4.17
1523 1732 4.039730 CGAGGAAGATGGATCACTATTGGT 59.960 45.833 0.00 0.00 0.00 3.67
1525 1734 5.207110 ACGAGGAAGATGGATCACTATTG 57.793 43.478 0.00 0.00 0.00 1.90
1526 1735 4.282195 GGACGAGGAAGATGGATCACTATT 59.718 45.833 0.00 0.00 0.00 1.73
1527 1736 3.829601 GGACGAGGAAGATGGATCACTAT 59.170 47.826 0.00 0.00 0.00 2.12
1528 1737 3.223435 GGACGAGGAAGATGGATCACTA 58.777 50.000 0.00 0.00 0.00 2.74
1529 1738 2.035632 GGACGAGGAAGATGGATCACT 58.964 52.381 0.00 0.00 0.00 3.41
1530 1739 1.069358 GGGACGAGGAAGATGGATCAC 59.931 57.143 0.00 0.00 0.00 3.06
1531 1740 1.414158 GGGACGAGGAAGATGGATCA 58.586 55.000 0.00 0.00 0.00 2.92
1532 1741 0.682292 GGGGACGAGGAAGATGGATC 59.318 60.000 0.00 0.00 0.00 3.36
1533 1742 0.764752 GGGGGACGAGGAAGATGGAT 60.765 60.000 0.00 0.00 0.00 3.41
1537 1746 1.132500 GATTGGGGGACGAGGAAGAT 58.868 55.000 0.00 0.00 0.00 2.40
1538 1747 0.042731 AGATTGGGGGACGAGGAAGA 59.957 55.000 0.00 0.00 0.00 2.87
1541 1750 1.382695 GGAGATTGGGGGACGAGGA 60.383 63.158 0.00 0.00 0.00 3.71
1544 1753 1.382695 GGAGGAGATTGGGGGACGA 60.383 63.158 0.00 0.00 0.00 4.20
1546 1755 2.079288 GGGGAGGAGATTGGGGGAC 61.079 68.421 0.00 0.00 0.00 4.46
1547 1756 2.376842 GGGGAGGAGATTGGGGGA 59.623 66.667 0.00 0.00 0.00 4.81
1548 1757 2.778717 GGGGGAGGAGATTGGGGG 60.779 72.222 0.00 0.00 0.00 5.40
1549 1758 1.001140 ATTGGGGGAGGAGATTGGGG 61.001 60.000 0.00 0.00 0.00 4.96
1550 1759 0.936691 AATTGGGGGAGGAGATTGGG 59.063 55.000 0.00 0.00 0.00 4.12
1551 1760 4.475919 AATAATTGGGGGAGGAGATTGG 57.524 45.455 0.00 0.00 0.00 3.16
1552 1761 5.898972 TCAAAATAATTGGGGGAGGAGATTG 59.101 40.000 0.00 0.00 0.00 2.67
1553 1762 6.103838 TCAAAATAATTGGGGGAGGAGATT 57.896 37.500 0.00 0.00 0.00 2.40
1554 1763 5.400653 CCTCAAAATAATTGGGGGAGGAGAT 60.401 44.000 0.00 0.00 42.32 2.75
1555 1764 4.079212 CCTCAAAATAATTGGGGGAGGAGA 60.079 45.833 0.00 0.00 42.32 3.71
1556 1765 4.218312 CCTCAAAATAATTGGGGGAGGAG 58.782 47.826 0.00 0.00 42.32 3.69
1557 1766 3.600617 ACCTCAAAATAATTGGGGGAGGA 59.399 43.478 11.53 0.00 44.32 3.71
1558 1767 3.706086 CACCTCAAAATAATTGGGGGAGG 59.294 47.826 11.53 0.00 44.32 4.30
1559 1768 4.352893 ACACCTCAAAATAATTGGGGGAG 58.647 43.478 11.53 6.23 44.32 4.30
1560 1769 4.412060 ACACCTCAAAATAATTGGGGGA 57.588 40.909 11.53 0.00 44.32 4.81
1561 1770 6.613153 TTTACACCTCAAAATAATTGGGGG 57.387 37.500 11.53 0.00 44.32 5.40
1578 1787 6.915349 TGGCACCAACATACTTTATTTACAC 58.085 36.000 0.00 0.00 0.00 2.90
1579 1788 7.526142 TTGGCACCAACATACTTTATTTACA 57.474 32.000 0.00 0.00 0.00 2.41
1580 1789 7.868415 TGTTTGGCACCAACATACTTTATTTAC 59.132 33.333 0.45 0.00 35.46 2.01
1581 1790 7.952671 TGTTTGGCACCAACATACTTTATTTA 58.047 30.769 0.45 0.00 35.46 1.40
1582 1791 6.821388 TGTTTGGCACCAACATACTTTATTT 58.179 32.000 0.45 0.00 35.46 1.40
1583 1792 6.412362 TGTTTGGCACCAACATACTTTATT 57.588 33.333 0.45 0.00 35.46 1.40
1584 1793 6.412362 TTGTTTGGCACCAACATACTTTAT 57.588 33.333 0.45 0.00 35.46 1.40
1852 2126 6.183360 GCTAGAAAGAGAAACGATGTTGAGTC 60.183 42.308 0.00 0.00 0.00 3.36
1885 2207 5.139727 CCCATGCACCATTAATTTCTCCTA 58.860 41.667 0.00 0.00 0.00 2.94
1887 2209 3.070015 CCCCATGCACCATTAATTTCTCC 59.930 47.826 0.00 0.00 0.00 3.71
2001 2356 3.488553 CGTAGTAGATCCACAACATCGCA 60.489 47.826 0.00 0.00 0.00 5.10
2139 2494 1.676635 TGCAGCTGAGTTGCCATCC 60.677 57.895 20.43 0.00 38.97 3.51
2247 2626 3.976942 CGCATATTTTCATGTTAGCCAGC 59.023 43.478 0.00 0.00 0.00 4.85
2248 2627 3.976942 GCGCATATTTTCATGTTAGCCAG 59.023 43.478 0.30 0.00 0.00 4.85
2289 2669 1.009429 AGGAGGAGGAGGATCTTTGCT 59.991 52.381 0.00 0.00 33.73 3.91
2292 2672 3.498614 TTCAGGAGGAGGAGGATCTTT 57.501 47.619 0.00 0.00 33.73 2.52
2373 2753 2.261361 CACCCGAGCATGACGACA 59.739 61.111 12.88 0.00 0.00 4.35
2602 3009 2.100197 CCATAGAGGAACCAGACGACA 58.900 52.381 0.00 0.00 41.22 4.35
2696 3104 8.122330 CACCAACAATTAAAGAAAAAGGAAAGC 58.878 33.333 0.00 0.00 0.00 3.51
2761 3187 2.760092 CCCCATTTGAATCACACCGAAT 59.240 45.455 0.00 0.00 0.00 3.34
2791 3217 1.912371 GCGTGGCTTTGTGGTAGAGC 61.912 60.000 0.00 0.00 35.71 4.09
2799 3225 1.599797 GGTGTAGGCGTGGCTTTGT 60.600 57.895 0.00 0.00 0.00 2.83
2834 3260 2.287103 CCTTGACTGCATCATCATCGTG 59.713 50.000 0.00 0.00 37.11 4.35
2929 3397 0.106819 GCAGTGGCATCCCTGAATCT 60.107 55.000 7.69 0.00 40.72 2.40
2932 3400 2.356278 GGCAGTGGCATCCCTGAA 59.644 61.111 12.58 0.00 43.71 3.02
2933 3401 4.100084 CGGCAGTGGCATCCCTGA 62.100 66.667 17.80 0.00 43.71 3.86
2946 3414 0.881118 GCTGTTTTCCTTCATCGGCA 59.119 50.000 0.00 0.00 0.00 5.69
3145 3613 5.718649 ATTGAACGTGATAGTGGAAATCG 57.281 39.130 0.00 0.00 0.00 3.34
3165 3634 7.865706 AAATAACTGGTTCGAGCATCTAATT 57.134 32.000 0.53 0.00 0.00 1.40
3179 3648 9.978044 GAATACGACTAGGATAAAATAACTGGT 57.022 33.333 0.00 0.00 0.00 4.00
3233 3702 0.675208 AAACGATGCATACGGCCACA 60.675 50.000 18.34 0.00 43.89 4.17
3234 3703 0.450184 AAAACGATGCATACGGCCAC 59.550 50.000 18.34 0.00 43.89 5.01
3235 3704 0.449786 CAAAACGATGCATACGGCCA 59.550 50.000 18.34 0.00 43.89 5.36
3236 3705 0.730265 TCAAAACGATGCATACGGCC 59.270 50.000 18.34 0.00 43.89 6.13
3237 3706 2.375110 CATCAAAACGATGCATACGGC 58.625 47.619 18.34 0.00 44.95 5.68
3246 3715 1.098050 GGCCTCTGCATCAAAACGAT 58.902 50.000 0.00 0.00 40.13 3.73
3247 3716 0.960364 GGGCCTCTGCATCAAAACGA 60.960 55.000 0.84 0.00 40.13 3.85
3248 3717 1.508088 GGGCCTCTGCATCAAAACG 59.492 57.895 0.84 0.00 40.13 3.60
3249 3718 1.508088 CGGGCCTCTGCATCAAAAC 59.492 57.895 0.84 0.00 40.13 2.43
3250 3719 1.678635 CCGGGCCTCTGCATCAAAA 60.679 57.895 0.84 0.00 40.13 2.44
3251 3720 2.045045 CCGGGCCTCTGCATCAAA 60.045 61.111 0.84 0.00 40.13 2.69
3252 3721 4.113815 CCCGGGCCTCTGCATCAA 62.114 66.667 8.08 0.00 40.13 2.57
3254 3723 3.543536 GATCCCGGGCCTCTGCATC 62.544 68.421 18.49 8.10 40.13 3.91
3255 3724 3.564218 GATCCCGGGCCTCTGCAT 61.564 66.667 18.49 0.73 40.13 3.96
3256 3725 4.804420 AGATCCCGGGCCTCTGCA 62.804 66.667 18.49 0.00 40.13 4.41
3257 3726 3.934962 GAGATCCCGGGCCTCTGC 61.935 72.222 25.05 14.80 0.00 4.26
3258 3727 3.237741 GGAGATCCCGGGCCTCTG 61.238 72.222 29.54 4.94 0.00 3.35
3288 3757 8.877864 TCATTACATGGAAGTGGTAGATTTTT 57.122 30.769 0.00 0.00 0.00 1.94
3289 3758 9.125026 GATCATTACATGGAAGTGGTAGATTTT 57.875 33.333 0.00 0.00 0.00 1.82
3290 3759 8.497745 AGATCATTACATGGAAGTGGTAGATTT 58.502 33.333 0.00 0.00 0.00 2.17
3291 3760 8.038862 AGATCATTACATGGAAGTGGTAGATT 57.961 34.615 0.00 0.00 0.00 2.40
3292 3761 7.623999 AGATCATTACATGGAAGTGGTAGAT 57.376 36.000 0.00 0.00 0.00 1.98
3293 3762 7.437713 AAGATCATTACATGGAAGTGGTAGA 57.562 36.000 0.00 0.00 0.00 2.59
3294 3763 9.784531 AATAAGATCATTACATGGAAGTGGTAG 57.215 33.333 0.00 0.00 0.00 3.18
3460 3933 6.360370 AGACACACTGCTCTTAGGAATTAA 57.640 37.500 0.00 0.00 0.00 1.40
3463 3936 4.142049 GCTAGACACACTGCTCTTAGGAAT 60.142 45.833 0.00 0.00 0.00 3.01
3717 4210 8.196771 TGCTCACAAATACTCTTGTTTCAATTT 58.803 29.630 0.00 0.00 37.43 1.82
3723 4216 6.942532 TCTTGCTCACAAATACTCTTGTTT 57.057 33.333 0.00 0.00 37.43 2.83
3793 4289 0.178975 CACGAGGAGCCTAGGGAGAT 60.179 60.000 11.72 0.00 0.00 2.75
3815 4311 2.356278 GGCAATGGGGCACTCTCA 59.644 61.111 0.00 0.00 42.77 3.27
3974 4471 3.706373 ACACATTCGGAGCCGCCT 61.706 61.111 3.59 0.00 39.59 5.52
3986 4484 2.819595 GGGACATCGCGCACACAT 60.820 61.111 8.75 0.00 0.00 3.21
3992 4490 4.593864 GGGAGAGGGACATCGCGC 62.594 72.222 0.00 0.00 0.00 6.86
3995 4493 2.786495 CCACGGGAGAGGGACATCG 61.786 68.421 0.00 0.00 36.91 3.84


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.