Multiple sequence alignment - TraesCS6B01G014800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G014800 chr6B 100.000 4527 0 0 1 4527 8905812 8910338 0.000000e+00 8360.0
1 TraesCS6B01G014800 chr6B 95.502 1534 62 3 3000 4527 116265070 116263538 0.000000e+00 2444.0
2 TraesCS6B01G014800 chr6B 94.788 1535 70 4 3000 4524 78499566 78498032 0.000000e+00 2383.0
3 TraesCS6B01G014800 chr6B 94.024 753 29 8 2083 2832 116265565 116264826 0.000000e+00 1127.0
4 TraesCS6B01G014800 chr6B 91.176 374 18 3 1 361 9165611 9165240 1.130000e-135 494.0
5 TraesCS6B01G014800 chr6B 94.118 136 7 1 349 483 9165213 9165078 5.940000e-49 206.0
6 TraesCS6B01G014800 chr7B 98.221 4047 69 3 483 4527 56932167 56928122 0.000000e+00 7071.0
7 TraesCS6B01G014800 chr7B 96.402 2557 87 5 479 3032 66276089 66278643 0.000000e+00 4207.0
8 TraesCS6B01G014800 chr7B 98.160 1739 26 3 2795 4527 66278201 66279939 0.000000e+00 3029.0
9 TraesCS6B01G014800 chr7B 94.595 37 1 1 55 90 17665524 17665488 6.330000e-04 56.5
10 TraesCS6B01G014800 chr4A 98.125 4054 69 6 479 4527 709026364 709022313 0.000000e+00 7059.0
11 TraesCS6B01G014800 chr4A 97.068 1535 36 5 3000 4527 662042987 662041455 0.000000e+00 2577.0
12 TraesCS6B01G014800 chr4A 95.409 1612 69 2 485 2091 662045254 662043643 0.000000e+00 2562.0
13 TraesCS6B01G014800 chr4A 93.227 753 35 8 2083 2832 662043482 662042743 0.000000e+00 1094.0
14 TraesCS6B01G014800 chr4B 97.947 4042 81 2 484 4524 188474448 188478488 0.000000e+00 7003.0
15 TraesCS6B01G014800 chr4B 90.508 748 50 11 2083 2827 553302031 553302760 0.000000e+00 968.0
16 TraesCS6B01G014800 chr2B 98.266 2537 42 2 484 3019 105873021 105875556 0.000000e+00 4440.0
17 TraesCS6B01G014800 chr2B 98.977 1661 14 3 2795 4453 105875126 105876785 0.000000e+00 2970.0
18 TraesCS6B01G014800 chr3B 96.020 1608 62 2 485 2091 719995018 719993412 0.000000e+00 2614.0
19 TraesCS6B01G014800 chr3B 95.833 1608 64 3 485 2091 720012121 720010516 0.000000e+00 2595.0
20 TraesCS6B01G014800 chr3B 96.799 1531 41 3 3003 4527 719992754 719991226 0.000000e+00 2549.0
21 TraesCS6B01G014800 chr3B 94.024 753 29 8 2083 2832 799737874 799737135 0.000000e+00 1127.0
22 TraesCS6B01G014800 chr3B 91.910 754 40 10 2083 2832 64690736 64690000 0.000000e+00 1035.0
23 TraesCS6B01G014800 chr3B 95.122 246 8 3 2795 3037 799737379 799737135 7.100000e-103 385.0
24 TraesCS6B01G014800 chr3B 93.023 43 2 1 61 102 277367970 277368012 1.360000e-05 62.1
25 TraesCS6B01G014800 chr1B 94.655 1609 84 2 485 2091 669870737 669869129 0.000000e+00 2494.0
26 TraesCS6B01G014800 chr1B 94.555 753 25 8 2083 2832 669868968 669868229 0.000000e+00 1149.0
27 TraesCS6B01G014800 chr1B 91.455 749 45 14 2083 2827 587058693 587059426 0.000000e+00 1011.0
28 TraesCS6B01G014800 chr1B 91.455 749 45 14 2083 2827 587081077 587081810 0.000000e+00 1011.0
29 TraesCS6B01G014800 chr1B 95.122 246 8 3 2795 3037 669868473 669868229 7.100000e-103 385.0
30 TraesCS6B01G014800 chr6D 87.568 370 23 10 5 356 4801028 4800664 1.520000e-109 407.0
31 TraesCS6B01G014800 chr6D 86.275 51 4 3 39 88 355872666 355872714 8.000000e-03 52.8
32 TraesCS6B01G014800 chr6A 89.922 129 11 2 32 160 3867706 3867580 1.010000e-36 165.0
33 TraesCS6B01G014800 chr3D 91.111 45 2 2 55 97 404291611 404291567 4.890000e-05 60.2
34 TraesCS6B01G014800 chr1A 89.362 47 3 2 60 104 347918393 347918347 1.760000e-04 58.4
35 TraesCS6B01G014800 chr5D 84.483 58 5 4 40 95 11219862 11219917 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G014800 chr6B 8905812 8910338 4526 False 8360.000000 8360 100.000000 1 4527 1 chr6B.!!$F1 4526
1 TraesCS6B01G014800 chr6B 78498032 78499566 1534 True 2383.000000 2383 94.788000 3000 4524 1 chr6B.!!$R1 1524
2 TraesCS6B01G014800 chr6B 116263538 116265565 2027 True 1785.500000 2444 94.763000 2083 4527 2 chr6B.!!$R3 2444
3 TraesCS6B01G014800 chr6B 9165078 9165611 533 True 350.000000 494 92.647000 1 483 2 chr6B.!!$R2 482
4 TraesCS6B01G014800 chr7B 56928122 56932167 4045 True 7071.000000 7071 98.221000 483 4527 1 chr7B.!!$R2 4044
5 TraesCS6B01G014800 chr7B 66276089 66279939 3850 False 3618.000000 4207 97.281000 479 4527 2 chr7B.!!$F1 4048
6 TraesCS6B01G014800 chr4A 709022313 709026364 4051 True 7059.000000 7059 98.125000 479 4527 1 chr4A.!!$R1 4048
7 TraesCS6B01G014800 chr4A 662041455 662045254 3799 True 2077.666667 2577 95.234667 485 4527 3 chr4A.!!$R2 4042
8 TraesCS6B01G014800 chr4B 188474448 188478488 4040 False 7003.000000 7003 97.947000 484 4524 1 chr4B.!!$F1 4040
9 TraesCS6B01G014800 chr4B 553302031 553302760 729 False 968.000000 968 90.508000 2083 2827 1 chr4B.!!$F2 744
10 TraesCS6B01G014800 chr2B 105873021 105876785 3764 False 3705.000000 4440 98.621500 484 4453 2 chr2B.!!$F1 3969
11 TraesCS6B01G014800 chr3B 720010516 720012121 1605 True 2595.000000 2595 95.833000 485 2091 1 chr3B.!!$R2 1606
12 TraesCS6B01G014800 chr3B 719991226 719995018 3792 True 2581.500000 2614 96.409500 485 4527 2 chr3B.!!$R3 4042
13 TraesCS6B01G014800 chr3B 64690000 64690736 736 True 1035.000000 1035 91.910000 2083 2832 1 chr3B.!!$R1 749
14 TraesCS6B01G014800 chr3B 799737135 799737874 739 True 756.000000 1127 94.573000 2083 3037 2 chr3B.!!$R4 954
15 TraesCS6B01G014800 chr1B 669868229 669870737 2508 True 1342.666667 2494 94.777333 485 3037 3 chr1B.!!$R1 2552
16 TraesCS6B01G014800 chr1B 587058693 587059426 733 False 1011.000000 1011 91.455000 2083 2827 1 chr1B.!!$F1 744
17 TraesCS6B01G014800 chr1B 587081077 587081810 733 False 1011.000000 1011 91.455000 2083 2827 1 chr1B.!!$F2 744

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
89 90 0.042131 TTGGGACGGAGGGAGTACAT 59.958 55.000 0.00 0.0 0.00 2.29 F
374 375 0.104620 AATATAGGTCCGCCCCTGGT 60.105 55.000 1.64 0.0 35.97 4.00 F
479 480 0.321210 TACCAACACACGCTCATGGG 60.321 55.000 0.00 0.0 35.44 4.00 F
1047 1054 0.603707 CTGTGCACGGAGATGTGGTT 60.604 55.000 21.59 0.0 40.26 3.67 F
1074 1081 1.296715 GGAGACCGCCACAGATGTT 59.703 57.895 0.00 0.0 0.00 2.71 F
1185 1192 2.997897 GTGGTGGGCTCGGACTCT 60.998 66.667 0.00 0.0 0.00 3.24 F
2630 2811 3.138304 GCTGTAAATGGGATATGCGTGA 58.862 45.455 0.00 0.0 0.00 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1031 1038 0.320683 CTCAACCACATCTCCGTGCA 60.321 55.000 0.00 0.00 35.47 4.57 R
2032 2044 1.466856 TGCATTGACTTCATCTGGCC 58.533 50.000 0.00 0.00 0.00 5.36 R
2214 2395 3.691609 GCACCTTCCTCATTGACCTAAAG 59.308 47.826 0.00 0.00 0.00 1.85 R
2783 2964 4.220163 TGCACAAACATCAGATAATTGCCA 59.780 37.500 7.09 3.62 0.00 4.92 R
2989 3170 4.746729 TGCACAAACATCAGATAATTGCC 58.253 39.130 7.09 1.70 0.00 4.52 R
3000 3181 5.942872 ACAGCTAAGTAATGCACAAACATC 58.057 37.500 0.00 0.00 0.00 3.06 R
3619 4017 2.099098 CACAAACACTTCCACCTTCCAC 59.901 50.000 0.00 0.00 0.00 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
47 48 9.927668 AAAATAACTGAAAAGGAATACACATGG 57.072 29.630 0.00 0.00 0.00 3.66
48 49 8.877864 AATAACTGAAAAGGAATACACATGGA 57.122 30.769 0.00 0.00 0.00 3.41
49 50 9.479549 AATAACTGAAAAGGAATACACATGGAT 57.520 29.630 0.00 0.00 0.00 3.41
53 54 9.784531 ACTGAAAAGGAATACACATGGATATAG 57.215 33.333 0.00 0.00 0.00 1.31
56 57 8.854614 AAAAGGAATACACATGGATATAGAGC 57.145 34.615 0.00 0.00 0.00 4.09
57 58 6.552445 AGGAATACACATGGATATAGAGCC 57.448 41.667 0.00 0.00 0.00 4.70
69 70 7.559335 TGGATATAGAGCCATGACACTTATT 57.441 36.000 0.00 0.00 35.75 1.40
70 71 7.977818 TGGATATAGAGCCATGACACTTATTT 58.022 34.615 0.00 0.00 35.75 1.40
71 72 8.439971 TGGATATAGAGCCATGACACTTATTTT 58.560 33.333 0.00 0.00 35.75 1.82
72 73 8.725148 GGATATAGAGCCATGACACTTATTTTG 58.275 37.037 0.00 0.00 0.00 2.44
73 74 6.949352 ATAGAGCCATGACACTTATTTTGG 57.051 37.500 0.00 0.00 0.00 3.28
74 75 4.019174 AGAGCCATGACACTTATTTTGGG 58.981 43.478 0.00 0.00 0.00 4.12
75 76 4.016444 GAGCCATGACACTTATTTTGGGA 58.984 43.478 0.00 0.00 0.00 4.37
76 77 3.763897 AGCCATGACACTTATTTTGGGAC 59.236 43.478 0.00 0.00 0.00 4.46
77 78 3.427503 GCCATGACACTTATTTTGGGACG 60.428 47.826 0.00 0.00 0.00 4.79
78 79 3.128589 CCATGACACTTATTTTGGGACGG 59.871 47.826 0.00 0.00 0.00 4.79
79 80 3.773418 TGACACTTATTTTGGGACGGA 57.227 42.857 0.00 0.00 0.00 4.69
80 81 3.670625 TGACACTTATTTTGGGACGGAG 58.329 45.455 0.00 0.00 0.00 4.63
81 82 3.007635 GACACTTATTTTGGGACGGAGG 58.992 50.000 0.00 0.00 0.00 4.30
82 83 2.290705 ACACTTATTTTGGGACGGAGGG 60.291 50.000 0.00 0.00 0.00 4.30
83 84 2.026636 CACTTATTTTGGGACGGAGGGA 60.027 50.000 0.00 0.00 0.00 4.20
84 85 2.238898 ACTTATTTTGGGACGGAGGGAG 59.761 50.000 0.00 0.00 0.00 4.30
85 86 1.961133 TATTTTGGGACGGAGGGAGT 58.039 50.000 0.00 0.00 0.00 3.85
86 87 1.961133 ATTTTGGGACGGAGGGAGTA 58.039 50.000 0.00 0.00 0.00 2.59
87 88 0.978907 TTTTGGGACGGAGGGAGTAC 59.021 55.000 0.00 0.00 0.00 2.73
88 89 0.178926 TTTGGGACGGAGGGAGTACA 60.179 55.000 0.00 0.00 0.00 2.90
89 90 0.042131 TTGGGACGGAGGGAGTACAT 59.958 55.000 0.00 0.00 0.00 2.29
90 91 0.396695 TGGGACGGAGGGAGTACATC 60.397 60.000 0.00 0.00 0.00 3.06
91 92 0.106116 GGGACGGAGGGAGTACATCT 60.106 60.000 0.00 0.00 0.00 2.90
92 93 1.320507 GGACGGAGGGAGTACATCTC 58.679 60.000 0.00 0.00 42.07 2.75
93 94 1.133730 GGACGGAGGGAGTACATCTCT 60.134 57.143 0.00 0.00 43.50 3.10
94 95 2.657143 GACGGAGGGAGTACATCTCTT 58.343 52.381 0.00 0.00 39.60 2.85
95 96 2.359531 GACGGAGGGAGTACATCTCTTG 59.640 54.545 0.00 0.00 39.60 3.02
96 97 1.067821 CGGAGGGAGTACATCTCTTGC 59.932 57.143 0.00 0.00 39.60 4.01
97 98 2.393646 GGAGGGAGTACATCTCTTGCT 58.606 52.381 0.00 0.00 39.60 3.91
98 99 2.769095 GGAGGGAGTACATCTCTTGCTT 59.231 50.000 0.00 0.00 39.60 3.91
99 100 3.181470 GGAGGGAGTACATCTCTTGCTTC 60.181 52.174 0.00 0.00 39.60 3.86
100 101 3.445008 AGGGAGTACATCTCTTGCTTCA 58.555 45.455 0.00 0.00 33.72 3.02
101 102 4.036518 AGGGAGTACATCTCTTGCTTCAT 58.963 43.478 0.00 0.00 33.72 2.57
102 103 4.125703 GGGAGTACATCTCTTGCTTCATG 58.874 47.826 0.00 0.00 42.40 3.07
103 104 4.383552 GGGAGTACATCTCTTGCTTCATGT 60.384 45.833 0.00 0.00 42.40 3.21
104 105 4.569966 GGAGTACATCTCTTGCTTCATGTG 59.430 45.833 0.00 0.00 42.40 3.21
105 106 5.157940 AGTACATCTCTTGCTTCATGTGT 57.842 39.130 0.00 0.00 31.83 3.72
106 107 6.286240 AGTACATCTCTTGCTTCATGTGTA 57.714 37.500 0.00 0.00 31.83 2.90
107 108 6.102663 AGTACATCTCTTGCTTCATGTGTAC 58.897 40.000 0.00 7.48 40.34 2.90
108 109 5.157940 ACATCTCTTGCTTCATGTGTACT 57.842 39.130 0.00 0.00 0.00 2.73
109 110 5.555017 ACATCTCTTGCTTCATGTGTACTT 58.445 37.500 0.00 0.00 0.00 2.24
110 111 6.000219 ACATCTCTTGCTTCATGTGTACTTT 59.000 36.000 0.00 0.00 0.00 2.66
111 112 6.488006 ACATCTCTTGCTTCATGTGTACTTTT 59.512 34.615 0.00 0.00 0.00 2.27
112 113 6.942532 TCTCTTGCTTCATGTGTACTTTTT 57.057 33.333 0.00 0.00 0.00 1.94
113 114 6.959361 TCTCTTGCTTCATGTGTACTTTTTC 58.041 36.000 0.00 0.00 0.00 2.29
114 115 6.542005 TCTCTTGCTTCATGTGTACTTTTTCA 59.458 34.615 0.00 0.00 0.00 2.69
115 116 6.728200 TCTTGCTTCATGTGTACTTTTTCAG 58.272 36.000 0.00 0.00 0.00 3.02
116 117 6.542005 TCTTGCTTCATGTGTACTTTTTCAGA 59.458 34.615 0.00 0.00 0.00 3.27
117 118 6.691754 TGCTTCATGTGTACTTTTTCAGAA 57.308 33.333 0.00 0.00 0.00 3.02
118 119 7.275888 TGCTTCATGTGTACTTTTTCAGAAT 57.724 32.000 0.00 0.00 0.00 2.40
119 120 8.389779 TGCTTCATGTGTACTTTTTCAGAATA 57.610 30.769 0.00 0.00 0.00 1.75
120 121 9.013229 TGCTTCATGTGTACTTTTTCAGAATAT 57.987 29.630 0.00 0.00 0.00 1.28
121 122 9.846248 GCTTCATGTGTACTTTTTCAGAATATT 57.154 29.630 0.00 0.00 0.00 1.28
140 141 8.186821 AGAATATTCTGAAACTGCAAAGTATGC 58.813 33.333 17.26 0.00 45.22 3.14
150 151 2.486951 CAAAGTATGCTGCATGGAGC 57.513 50.000 30.22 30.22 45.96 4.70
151 152 1.066605 CAAAGTATGCTGCATGGAGCC 59.933 52.381 32.84 19.42 44.83 4.70
152 153 0.466922 AAGTATGCTGCATGGAGCCC 60.467 55.000 32.84 21.28 44.83 5.19
153 154 2.111669 TATGCTGCATGGAGCCCG 59.888 61.111 32.84 1.47 44.83 6.13
154 155 2.442534 TATGCTGCATGGAGCCCGA 61.443 57.895 32.84 17.61 44.83 5.14
155 156 1.771783 TATGCTGCATGGAGCCCGAT 61.772 55.000 32.84 22.71 44.83 4.18
156 157 2.976903 GCTGCATGGAGCCCGATC 60.977 66.667 27.28 0.00 44.83 3.69
157 158 2.827423 CTGCATGGAGCCCGATCT 59.173 61.111 0.00 0.00 44.83 2.75
158 159 1.301558 CTGCATGGAGCCCGATCTC 60.302 63.158 0.00 0.00 44.83 2.75
159 160 1.756408 CTGCATGGAGCCCGATCTCT 61.756 60.000 0.00 0.00 44.83 3.10
160 161 0.469892 TGCATGGAGCCCGATCTCTA 60.470 55.000 0.00 0.00 44.83 2.43
161 162 0.901124 GCATGGAGCCCGATCTCTAT 59.099 55.000 0.00 1.51 35.09 1.98
162 163 1.277557 GCATGGAGCCCGATCTCTATT 59.722 52.381 0.00 0.00 32.86 1.73
163 164 2.497675 GCATGGAGCCCGATCTCTATTA 59.502 50.000 0.00 0.00 32.86 0.98
164 165 3.430098 GCATGGAGCCCGATCTCTATTAG 60.430 52.174 0.00 0.00 32.86 1.73
165 166 2.808919 TGGAGCCCGATCTCTATTAGG 58.191 52.381 0.00 0.00 33.70 2.69
166 167 2.378886 TGGAGCCCGATCTCTATTAGGA 59.621 50.000 0.00 0.00 33.70 2.94
167 168 3.181422 TGGAGCCCGATCTCTATTAGGAA 60.181 47.826 0.00 0.00 33.70 3.36
168 169 4.027437 GGAGCCCGATCTCTATTAGGAAT 58.973 47.826 0.00 0.00 33.70 3.01
169 170 4.468153 GGAGCCCGATCTCTATTAGGAATT 59.532 45.833 0.00 0.00 33.70 2.17
170 171 5.046231 GGAGCCCGATCTCTATTAGGAATTT 60.046 44.000 0.00 0.00 33.70 1.82
171 172 6.043854 AGCCCGATCTCTATTAGGAATTTC 57.956 41.667 0.00 0.00 0.00 2.17
172 173 5.046231 AGCCCGATCTCTATTAGGAATTTCC 60.046 44.000 7.39 7.39 36.58 3.13
173 174 5.411781 CCCGATCTCTATTAGGAATTTCCG 58.588 45.833 9.77 0.00 42.75 4.30
174 175 4.865365 CCGATCTCTATTAGGAATTTCCGC 59.135 45.833 9.77 0.00 42.75 5.54
175 176 5.336849 CCGATCTCTATTAGGAATTTCCGCT 60.337 44.000 9.77 1.85 42.75 5.52
176 177 5.802956 CGATCTCTATTAGGAATTTCCGCTC 59.197 44.000 9.77 0.00 42.75 5.03
177 178 6.349777 CGATCTCTATTAGGAATTTCCGCTCT 60.350 42.308 9.77 0.00 42.75 4.09
178 179 6.732896 TCTCTATTAGGAATTTCCGCTCTT 57.267 37.500 9.77 0.00 42.75 2.85
179 180 7.125792 TCTCTATTAGGAATTTCCGCTCTTT 57.874 36.000 9.77 0.00 42.75 2.52
180 181 8.246430 TCTCTATTAGGAATTTCCGCTCTTTA 57.754 34.615 9.77 0.00 42.75 1.85
181 182 8.701895 TCTCTATTAGGAATTTCCGCTCTTTAA 58.298 33.333 9.77 2.91 42.75 1.52
182 183 8.888579 TCTATTAGGAATTTCCGCTCTTTAAG 57.111 34.615 9.77 2.14 42.75 1.85
183 184 6.944234 ATTAGGAATTTCCGCTCTTTAAGG 57.056 37.500 9.77 0.00 42.75 2.69
184 185 4.302559 AGGAATTTCCGCTCTTTAAGGT 57.697 40.909 9.77 0.00 42.75 3.50
185 186 4.010349 AGGAATTTCCGCTCTTTAAGGTG 58.990 43.478 9.77 0.00 42.75 4.00
186 187 3.427638 GGAATTTCCGCTCTTTAAGGTGC 60.428 47.826 0.00 1.82 0.00 5.01
187 188 2.561478 TTTCCGCTCTTTAAGGTGCT 57.439 45.000 9.54 0.00 0.00 4.40
188 189 3.688694 TTTCCGCTCTTTAAGGTGCTA 57.311 42.857 9.54 0.00 0.00 3.49
189 190 2.667473 TCCGCTCTTTAAGGTGCTAC 57.333 50.000 9.54 0.00 0.00 3.58
190 191 2.176889 TCCGCTCTTTAAGGTGCTACT 58.823 47.619 9.54 0.00 0.00 2.57
191 192 3.359033 TCCGCTCTTTAAGGTGCTACTA 58.641 45.455 9.54 0.00 0.00 1.82
192 193 3.765511 TCCGCTCTTTAAGGTGCTACTAA 59.234 43.478 9.54 0.00 0.00 2.24
193 194 4.221262 TCCGCTCTTTAAGGTGCTACTAAA 59.779 41.667 9.54 0.00 0.00 1.85
194 195 5.105064 TCCGCTCTTTAAGGTGCTACTAAAT 60.105 40.000 9.54 0.00 0.00 1.40
195 196 6.097270 TCCGCTCTTTAAGGTGCTACTAAATA 59.903 38.462 9.54 0.00 0.00 1.40
196 197 6.759827 CCGCTCTTTAAGGTGCTACTAAATAA 59.240 38.462 9.54 0.00 0.00 1.40
197 198 7.042658 CCGCTCTTTAAGGTGCTACTAAATAAG 60.043 40.741 9.54 0.00 0.00 1.73
198 199 7.705325 CGCTCTTTAAGGTGCTACTAAATAAGA 59.295 37.037 9.54 0.00 0.00 2.10
199 200 9.379791 GCTCTTTAAGGTGCTACTAAATAAGAA 57.620 33.333 4.55 0.00 0.00 2.52
203 204 9.969001 TTTAAGGTGCTACTAAATAAGAATGGT 57.031 29.630 0.00 0.00 0.00 3.55
204 205 9.609346 TTAAGGTGCTACTAAATAAGAATGGTC 57.391 33.333 0.00 0.00 0.00 4.02
205 206 7.439108 AGGTGCTACTAAATAAGAATGGTCT 57.561 36.000 0.00 0.00 34.72 3.85
206 207 7.275920 AGGTGCTACTAAATAAGAATGGTCTG 58.724 38.462 0.00 0.00 33.05 3.51
207 208 7.048512 GGTGCTACTAAATAAGAATGGTCTGT 58.951 38.462 0.00 0.00 33.05 3.41
208 209 7.011482 GGTGCTACTAAATAAGAATGGTCTGTG 59.989 40.741 0.00 0.00 33.05 3.66
209 210 7.549488 GTGCTACTAAATAAGAATGGTCTGTGT 59.451 37.037 0.00 0.00 33.05 3.72
210 211 7.549134 TGCTACTAAATAAGAATGGTCTGTGTG 59.451 37.037 0.00 0.00 33.05 3.82
211 212 7.011482 GCTACTAAATAAGAATGGTCTGTGTGG 59.989 40.741 0.00 0.00 33.05 4.17
212 213 5.648092 ACTAAATAAGAATGGTCTGTGTGGC 59.352 40.000 0.00 0.00 33.05 5.01
213 214 3.719268 ATAAGAATGGTCTGTGTGGCA 57.281 42.857 0.00 0.00 33.05 4.92
214 215 2.363306 AAGAATGGTCTGTGTGGCAA 57.637 45.000 0.00 0.00 33.05 4.52
215 216 1.901591 AGAATGGTCTGTGTGGCAAG 58.098 50.000 0.00 0.00 30.83 4.01
216 217 1.421268 AGAATGGTCTGTGTGGCAAGA 59.579 47.619 0.00 0.00 30.83 3.02
217 218 2.158623 AGAATGGTCTGTGTGGCAAGAA 60.159 45.455 0.00 0.00 30.83 2.52
218 219 2.592102 ATGGTCTGTGTGGCAAGAAT 57.408 45.000 0.00 0.00 0.00 2.40
219 220 2.363306 TGGTCTGTGTGGCAAGAATT 57.637 45.000 0.00 0.00 0.00 2.17
220 221 7.010156 AGAATGGTCTGTGTGGCAAGAATTG 62.010 44.000 0.00 0.00 40.37 2.32
238 239 9.713740 CAAGAATTGCTACAGAACAAATATCTC 57.286 33.333 0.00 0.00 40.39 2.75
239 240 9.678260 AAGAATTGCTACAGAACAAATATCTCT 57.322 29.630 0.00 0.00 0.00 3.10
240 241 9.678260 AGAATTGCTACAGAACAAATATCTCTT 57.322 29.630 0.00 0.00 0.00 2.85
245 246 9.719355 TGCTACAGAACAAATATCTCTTAAACA 57.281 29.630 0.00 0.00 0.00 2.83
246 247 9.974750 GCTACAGAACAAATATCTCTTAAACAC 57.025 33.333 0.00 0.00 0.00 3.32
254 255 9.003658 ACAAATATCTCTTAAACACTTCACTGG 57.996 33.333 0.00 0.00 0.00 4.00
255 256 8.454106 CAAATATCTCTTAAACACTTCACTGGG 58.546 37.037 0.00 0.00 0.00 4.45
256 257 3.740115 TCTCTTAAACACTTCACTGGGC 58.260 45.455 0.00 0.00 0.00 5.36
257 258 2.480419 CTCTTAAACACTTCACTGGGCG 59.520 50.000 0.00 0.00 0.00 6.13
258 259 2.103432 TCTTAAACACTTCACTGGGCGA 59.897 45.455 0.00 0.00 0.00 5.54
259 260 2.623878 TAAACACTTCACTGGGCGAA 57.376 45.000 0.00 0.00 0.00 4.70
260 261 1.021968 AAACACTTCACTGGGCGAAC 58.978 50.000 0.00 0.00 0.00 3.95
261 262 0.818040 AACACTTCACTGGGCGAACC 60.818 55.000 0.00 0.00 40.81 3.62
262 263 2.030562 ACTTCACTGGGCGAACCG 59.969 61.111 0.00 0.00 44.64 4.44
263 264 2.342279 CTTCACTGGGCGAACCGA 59.658 61.111 0.00 0.00 44.64 4.69
264 265 1.301401 CTTCACTGGGCGAACCGAA 60.301 57.895 0.00 0.00 44.64 4.30
265 266 0.882927 CTTCACTGGGCGAACCGAAA 60.883 55.000 0.00 0.00 44.64 3.46
266 267 0.250553 TTCACTGGGCGAACCGAAAT 60.251 50.000 0.00 0.00 44.64 2.17
267 268 0.250553 TCACTGGGCGAACCGAAATT 60.251 50.000 0.00 0.00 44.64 1.82
268 269 1.002201 TCACTGGGCGAACCGAAATTA 59.998 47.619 0.00 0.00 44.64 1.40
269 270 1.129811 CACTGGGCGAACCGAAATTAC 59.870 52.381 0.00 0.00 44.64 1.89
270 271 0.730840 CTGGGCGAACCGAAATTACC 59.269 55.000 0.00 0.00 44.64 2.85
271 272 0.677414 TGGGCGAACCGAAATTACCC 60.677 55.000 0.00 0.00 44.64 3.69
272 273 0.677414 GGGCGAACCGAAATTACCCA 60.677 55.000 0.00 0.00 35.84 4.51
273 274 1.166989 GGCGAACCGAAATTACCCAA 58.833 50.000 0.00 0.00 0.00 4.12
274 275 1.746787 GGCGAACCGAAATTACCCAAT 59.253 47.619 0.00 0.00 0.00 3.16
275 276 2.478879 GGCGAACCGAAATTACCCAATG 60.479 50.000 0.00 0.00 0.00 2.82
276 277 2.162809 GCGAACCGAAATTACCCAATGT 59.837 45.455 0.00 0.00 0.00 2.71
277 278 3.729762 GCGAACCGAAATTACCCAATGTC 60.730 47.826 0.00 0.00 0.00 3.06
278 279 3.181504 CGAACCGAAATTACCCAATGTCC 60.182 47.826 0.00 0.00 0.00 4.02
279 280 3.443145 ACCGAAATTACCCAATGTCCA 57.557 42.857 0.00 0.00 0.00 4.02
280 281 3.086282 ACCGAAATTACCCAATGTCCAC 58.914 45.455 0.00 0.00 0.00 4.02
281 282 3.245122 ACCGAAATTACCCAATGTCCACT 60.245 43.478 0.00 0.00 0.00 4.00
282 283 3.761752 CCGAAATTACCCAATGTCCACTT 59.238 43.478 0.00 0.00 0.00 3.16
283 284 4.944930 CCGAAATTACCCAATGTCCACTTA 59.055 41.667 0.00 0.00 0.00 2.24
284 285 5.163693 CCGAAATTACCCAATGTCCACTTAC 60.164 44.000 0.00 0.00 0.00 2.34
285 286 5.646360 CGAAATTACCCAATGTCCACTTACT 59.354 40.000 0.00 0.00 0.00 2.24
286 287 6.150474 CGAAATTACCCAATGTCCACTTACTT 59.850 38.462 0.00 0.00 0.00 2.24
287 288 6.834168 AATTACCCAATGTCCACTTACTTG 57.166 37.500 0.00 0.00 0.00 3.16
288 289 2.514803 ACCCAATGTCCACTTACTTGC 58.485 47.619 0.00 0.00 0.00 4.01
289 290 2.158534 ACCCAATGTCCACTTACTTGCA 60.159 45.455 0.00 0.00 0.00 4.08
290 291 2.890311 CCCAATGTCCACTTACTTGCAA 59.110 45.455 0.00 0.00 0.00 4.08
291 292 3.320541 CCCAATGTCCACTTACTTGCAAA 59.679 43.478 0.00 0.00 0.00 3.68
292 293 4.202202 CCCAATGTCCACTTACTTGCAAAA 60.202 41.667 0.00 0.00 0.00 2.44
293 294 4.984161 CCAATGTCCACTTACTTGCAAAAG 59.016 41.667 8.95 8.95 0.00 2.27
294 295 5.451798 CCAATGTCCACTTACTTGCAAAAGT 60.452 40.000 10.14 10.14 36.38 2.66
295 296 5.852282 ATGTCCACTTACTTGCAAAAGTT 57.148 34.783 12.76 0.00 33.72 2.66
296 297 5.652994 TGTCCACTTACTTGCAAAAGTTT 57.347 34.783 12.76 0.00 33.72 2.66
297 298 5.406649 TGTCCACTTACTTGCAAAAGTTTG 58.593 37.500 12.76 8.32 41.03 2.93
298 299 5.047660 TGTCCACTTACTTGCAAAAGTTTGT 60.048 36.000 12.76 3.22 40.24 2.83
299 300 6.151312 TGTCCACTTACTTGCAAAAGTTTGTA 59.849 34.615 12.76 2.28 40.24 2.41
300 301 7.147983 TGTCCACTTACTTGCAAAAGTTTGTAT 60.148 33.333 12.76 0.00 40.24 2.29
301 302 8.347035 GTCCACTTACTTGCAAAAGTTTGTATA 58.653 33.333 12.76 0.00 40.24 1.47
302 303 8.904834 TCCACTTACTTGCAAAAGTTTGTATAA 58.095 29.630 12.76 0.00 40.24 0.98
303 304 8.964150 CCACTTACTTGCAAAAGTTTGTATAAC 58.036 33.333 12.76 0.00 40.24 1.89
304 305 9.730420 CACTTACTTGCAAAAGTTTGTATAACT 57.270 29.630 12.76 0.00 40.24 2.24
309 310 8.899771 ACTTGCAAAAGTTTGTATAACTACTGT 58.100 29.630 0.00 0.00 40.24 3.55
310 311 9.730420 CTTGCAAAAGTTTGTATAACTACTGTT 57.270 29.630 0.00 0.00 40.24 3.16
321 322 9.647797 TTGTATAACTACTGTTTATGGAGTGTG 57.352 33.333 0.00 0.00 37.59 3.82
322 323 9.027202 TGTATAACTACTGTTTATGGAGTGTGA 57.973 33.333 0.00 0.00 37.59 3.58
323 324 9.865321 GTATAACTACTGTTTATGGAGTGTGAA 57.135 33.333 0.00 0.00 37.59 3.18
325 326 7.730364 AACTACTGTTTATGGAGTGTGAAAG 57.270 36.000 0.00 0.00 31.37 2.62
326 327 5.701290 ACTACTGTTTATGGAGTGTGAAAGC 59.299 40.000 0.00 0.00 0.00 3.51
327 328 4.460263 ACTGTTTATGGAGTGTGAAAGCA 58.540 39.130 0.00 0.00 0.00 3.91
328 329 4.275936 ACTGTTTATGGAGTGTGAAAGCAC 59.724 41.667 0.00 0.00 45.35 4.40
340 341 7.986085 AGTGTGAAAGCACTAATTATCTGTT 57.014 32.000 0.00 0.00 46.68 3.16
341 342 7.810658 AGTGTGAAAGCACTAATTATCTGTTG 58.189 34.615 0.00 0.00 46.68 3.33
342 343 7.445402 AGTGTGAAAGCACTAATTATCTGTTGT 59.555 33.333 0.00 0.00 46.68 3.32
343 344 8.717821 GTGTGAAAGCACTAATTATCTGTTGTA 58.282 33.333 0.00 0.00 45.36 2.41
344 345 9.448438 TGTGAAAGCACTAATTATCTGTTGTAT 57.552 29.630 0.00 0.00 45.36 2.29
366 367 9.537192 TGTATAACAGTGAAAAATATAGGTCCG 57.463 33.333 0.00 0.00 0.00 4.79
367 368 5.813080 AACAGTGAAAAATATAGGTCCGC 57.187 39.130 0.00 0.00 0.00 5.54
368 369 4.196971 ACAGTGAAAAATATAGGTCCGCC 58.803 43.478 0.00 0.00 0.00 6.13
369 370 3.564225 CAGTGAAAAATATAGGTCCGCCC 59.436 47.826 0.00 0.00 34.57 6.13
370 371 2.882761 GTGAAAAATATAGGTCCGCCCC 59.117 50.000 0.00 0.00 34.57 5.80
371 372 2.781174 TGAAAAATATAGGTCCGCCCCT 59.219 45.455 0.00 0.00 38.70 4.79
372 373 2.951229 AAAATATAGGTCCGCCCCTG 57.049 50.000 1.64 0.00 35.97 4.45
373 374 1.064825 AAATATAGGTCCGCCCCTGG 58.935 55.000 1.64 0.00 35.97 4.45
374 375 0.104620 AATATAGGTCCGCCCCTGGT 60.105 55.000 1.64 0.00 35.97 4.00
375 376 0.544595 ATATAGGTCCGCCCCTGGTC 60.545 60.000 1.64 0.00 35.97 4.02
376 377 1.951923 TATAGGTCCGCCCCTGGTCA 61.952 60.000 1.64 0.00 35.97 4.02
379 380 3.948719 GTCCGCCCCTGGTCACAA 61.949 66.667 0.00 0.00 0.00 3.33
380 381 3.636231 TCCGCCCCTGGTCACAAG 61.636 66.667 0.00 0.00 0.00 3.16
381 382 3.953775 CCGCCCCTGGTCACAAGT 61.954 66.667 0.00 0.00 0.00 3.16
382 383 2.669569 CGCCCCTGGTCACAAGTG 60.670 66.667 0.00 0.00 0.00 3.16
383 384 2.282462 GCCCCTGGTCACAAGTGG 60.282 66.667 0.00 0.00 0.00 4.00
384 385 2.282462 CCCCTGGTCACAAGTGGC 60.282 66.667 0.00 0.00 0.00 5.01
385 386 2.833913 CCCCTGGTCACAAGTGGCT 61.834 63.158 4.67 0.00 35.13 4.75
386 387 1.488705 CCCCTGGTCACAAGTGGCTA 61.489 60.000 4.67 0.00 35.13 3.93
387 388 0.620556 CCCTGGTCACAAGTGGCTAT 59.379 55.000 4.67 0.00 35.13 2.97
388 389 1.679944 CCCTGGTCACAAGTGGCTATG 60.680 57.143 4.67 0.00 35.13 2.23
389 390 1.278985 CCTGGTCACAAGTGGCTATGA 59.721 52.381 4.67 0.00 35.13 2.15
390 391 2.290260 CCTGGTCACAAGTGGCTATGAA 60.290 50.000 4.67 0.00 35.13 2.57
391 392 3.411446 CTGGTCACAAGTGGCTATGAAA 58.589 45.455 4.67 0.00 35.13 2.69
392 393 3.146066 TGGTCACAAGTGGCTATGAAAC 58.854 45.455 4.67 0.00 35.13 2.78
393 394 2.488153 GGTCACAAGTGGCTATGAAACC 59.512 50.000 4.67 0.00 35.13 3.27
394 395 2.488153 GTCACAAGTGGCTATGAAACCC 59.512 50.000 0.00 0.00 31.34 4.11
395 396 2.107378 TCACAAGTGGCTATGAAACCCA 59.893 45.455 0.00 0.00 0.00 4.51
399 400 2.489938 GTGGCTATGAAACCCACTGA 57.510 50.000 1.99 0.00 44.32 3.41
400 401 2.084546 GTGGCTATGAAACCCACTGAC 58.915 52.381 1.99 0.00 44.32 3.51
401 402 1.985159 TGGCTATGAAACCCACTGACT 59.015 47.619 0.00 0.00 0.00 3.41
402 403 2.027192 TGGCTATGAAACCCACTGACTC 60.027 50.000 0.00 0.00 0.00 3.36
403 404 2.633488 GCTATGAAACCCACTGACTCC 58.367 52.381 0.00 0.00 0.00 3.85
404 405 2.237392 GCTATGAAACCCACTGACTCCT 59.763 50.000 0.00 0.00 0.00 3.69
405 406 3.451178 GCTATGAAACCCACTGACTCCTA 59.549 47.826 0.00 0.00 0.00 2.94
406 407 4.101741 GCTATGAAACCCACTGACTCCTAT 59.898 45.833 0.00 0.00 0.00 2.57
407 408 5.396884 GCTATGAAACCCACTGACTCCTATT 60.397 44.000 0.00 0.00 0.00 1.73
408 409 4.993705 TGAAACCCACTGACTCCTATTT 57.006 40.909 0.00 0.00 0.00 1.40
409 410 5.319043 TGAAACCCACTGACTCCTATTTT 57.681 39.130 0.00 0.00 0.00 1.82
410 411 5.701224 TGAAACCCACTGACTCCTATTTTT 58.299 37.500 0.00 0.00 0.00 1.94
411 412 5.534654 TGAAACCCACTGACTCCTATTTTTG 59.465 40.000 0.00 0.00 0.00 2.44
412 413 4.034285 ACCCACTGACTCCTATTTTTGG 57.966 45.455 0.00 0.00 0.00 3.28
413 414 3.245264 ACCCACTGACTCCTATTTTTGGG 60.245 47.826 1.65 1.65 46.82 4.12
414 415 3.245264 CCCACTGACTCCTATTTTTGGGT 60.245 47.826 0.00 0.00 38.12 4.51
415 416 4.010349 CCACTGACTCCTATTTTTGGGTC 58.990 47.826 0.00 0.00 0.00 4.46
416 417 4.506625 CCACTGACTCCTATTTTTGGGTCA 60.507 45.833 0.00 0.00 35.28 4.02
417 418 5.256474 CACTGACTCCTATTTTTGGGTCAT 58.744 41.667 0.00 0.00 35.68 3.06
418 419 6.414732 CACTGACTCCTATTTTTGGGTCATA 58.585 40.000 0.00 0.00 35.68 2.15
419 420 6.540189 CACTGACTCCTATTTTTGGGTCATAG 59.460 42.308 0.00 0.00 35.68 2.23
420 421 6.443849 ACTGACTCCTATTTTTGGGTCATAGA 59.556 38.462 0.00 0.00 35.68 1.98
421 422 7.037586 ACTGACTCCTATTTTTGGGTCATAGAA 60.038 37.037 0.00 0.00 35.68 2.10
422 423 7.338710 TGACTCCTATTTTTGGGTCATAGAAG 58.661 38.462 0.00 0.00 33.27 2.85
423 424 7.182026 TGACTCCTATTTTTGGGTCATAGAAGA 59.818 37.037 0.00 0.00 33.27 2.87
424 425 7.569240 ACTCCTATTTTTGGGTCATAGAAGAG 58.431 38.462 0.00 0.00 0.00 2.85
425 426 7.182930 ACTCCTATTTTTGGGTCATAGAAGAGT 59.817 37.037 0.00 0.00 0.00 3.24
426 427 7.928873 TCCTATTTTTGGGTCATAGAAGAGTT 58.071 34.615 0.00 0.00 0.00 3.01
427 428 8.047310 TCCTATTTTTGGGTCATAGAAGAGTTC 58.953 37.037 0.00 0.00 0.00 3.01
428 429 8.049721 CCTATTTTTGGGTCATAGAAGAGTTCT 58.950 37.037 0.00 0.00 43.72 3.01
429 430 9.454859 CTATTTTTGGGTCATAGAAGAGTTCTT 57.545 33.333 0.00 0.00 41.14 2.52
430 431 7.510549 TTTTTGGGTCATAGAAGAGTTCTTG 57.489 36.000 0.00 0.00 41.14 3.02
431 432 4.826274 TGGGTCATAGAAGAGTTCTTGG 57.174 45.455 0.00 0.00 41.14 3.61
432 433 3.519510 TGGGTCATAGAAGAGTTCTTGGG 59.480 47.826 0.00 0.00 41.14 4.12
433 434 3.519913 GGGTCATAGAAGAGTTCTTGGGT 59.480 47.826 0.00 0.00 41.14 4.51
434 435 4.715297 GGGTCATAGAAGAGTTCTTGGGTA 59.285 45.833 0.00 0.00 41.14 3.69
435 436 5.163395 GGGTCATAGAAGAGTTCTTGGGTAG 60.163 48.000 0.00 0.00 41.14 3.18
436 437 5.657302 GGTCATAGAAGAGTTCTTGGGTAGA 59.343 44.000 0.00 0.00 41.14 2.59
437 438 6.325286 GGTCATAGAAGAGTTCTTGGGTAGAT 59.675 42.308 0.00 0.00 41.14 1.98
438 439 7.206687 GTCATAGAAGAGTTCTTGGGTAGATG 58.793 42.308 0.00 0.00 41.14 2.90
439 440 6.897966 TCATAGAAGAGTTCTTGGGTAGATGT 59.102 38.462 0.00 0.00 41.14 3.06
440 441 7.400339 TCATAGAAGAGTTCTTGGGTAGATGTT 59.600 37.037 0.00 0.00 41.14 2.71
441 442 6.043854 AGAAGAGTTCTTGGGTAGATGTTC 57.956 41.667 0.00 0.00 36.36 3.18
442 443 5.782845 AGAAGAGTTCTTGGGTAGATGTTCT 59.217 40.000 0.00 0.00 36.36 3.01
443 444 6.271159 AGAAGAGTTCTTGGGTAGATGTTCTT 59.729 38.462 0.00 0.00 36.36 2.52
444 445 7.455008 AGAAGAGTTCTTGGGTAGATGTTCTTA 59.545 37.037 0.00 0.00 36.36 2.10
445 446 6.937392 AGAGTTCTTGGGTAGATGTTCTTAC 58.063 40.000 0.00 0.00 31.54 2.34
446 447 6.497259 AGAGTTCTTGGGTAGATGTTCTTACA 59.503 38.462 0.00 0.00 38.95 2.41
459 460 5.524511 TGTTCTTACATCGTTCGAAATGG 57.475 39.130 13.06 1.06 0.00 3.16
460 461 4.992319 TGTTCTTACATCGTTCGAAATGGT 59.008 37.500 13.06 6.53 0.00 3.55
461 462 6.157904 TGTTCTTACATCGTTCGAAATGGTA 58.842 36.000 13.06 5.70 0.00 3.25
462 463 6.089820 TGTTCTTACATCGTTCGAAATGGTAC 59.910 38.462 13.06 5.47 0.00 3.34
463 464 5.104374 TCTTACATCGTTCGAAATGGTACC 58.896 41.667 4.43 4.43 0.00 3.34
464 465 3.322211 ACATCGTTCGAAATGGTACCA 57.678 42.857 18.99 18.99 0.00 3.25
465 466 3.666274 ACATCGTTCGAAATGGTACCAA 58.334 40.909 20.76 0.00 0.00 3.67
466 467 3.434299 ACATCGTTCGAAATGGTACCAAC 59.566 43.478 20.76 10.44 0.00 3.77
467 468 3.109044 TCGTTCGAAATGGTACCAACA 57.891 42.857 20.76 0.00 0.00 3.33
468 469 2.801679 TCGTTCGAAATGGTACCAACAC 59.198 45.455 20.76 11.65 0.00 3.32
469 470 2.544686 CGTTCGAAATGGTACCAACACA 59.455 45.455 20.76 0.00 0.00 3.72
470 471 3.605231 CGTTCGAAATGGTACCAACACAC 60.605 47.826 20.76 10.08 0.00 3.82
471 472 2.136728 TCGAAATGGTACCAACACACG 58.863 47.619 20.76 18.73 0.00 4.49
472 473 1.399215 CGAAATGGTACCAACACACGC 60.399 52.381 20.76 3.62 0.00 5.34
473 474 1.877443 GAAATGGTACCAACACACGCT 59.123 47.619 20.76 0.00 0.00 5.07
474 475 1.519408 AATGGTACCAACACACGCTC 58.481 50.000 20.76 0.00 0.00 5.03
475 476 0.394938 ATGGTACCAACACACGCTCA 59.605 50.000 20.76 0.00 0.00 4.26
476 477 0.394938 TGGTACCAACACACGCTCAT 59.605 50.000 13.60 0.00 0.00 2.90
477 478 0.796312 GGTACCAACACACGCTCATG 59.204 55.000 7.15 0.00 0.00 3.07
478 479 0.796312 GTACCAACACACGCTCATGG 59.204 55.000 0.00 0.00 37.19 3.66
479 480 0.321210 TACCAACACACGCTCATGGG 60.321 55.000 0.00 0.00 35.44 4.00
480 481 1.302431 CCAACACACGCTCATGGGA 60.302 57.895 0.00 0.00 0.00 4.37
481 482 0.888736 CCAACACACGCTCATGGGAA 60.889 55.000 0.00 0.00 0.00 3.97
879 886 2.618449 CCCCACCGTTTACCCCCAT 61.618 63.158 0.00 0.00 0.00 4.00
995 1002 3.382832 CGGCGGGTTCTCTCAGGT 61.383 66.667 0.00 0.00 0.00 4.00
1047 1054 0.603707 CTGTGCACGGAGATGTGGTT 60.604 55.000 21.59 0.00 40.26 3.67
1074 1081 1.296715 GGAGACCGCCACAGATGTT 59.703 57.895 0.00 0.00 0.00 2.71
1143 1150 3.785859 GCTGGATCGGTCCCTGCA 61.786 66.667 20.53 0.00 44.41 4.41
1185 1192 2.997897 GTGGTGGGCTCGGACTCT 60.998 66.667 0.00 0.00 0.00 3.24
1803 1814 8.797438 TGATCTGTAGGATTGCTGTAGTTATAG 58.203 37.037 0.00 0.00 34.33 1.31
2032 2044 5.610398 TGCACCACTATGTACATTAGATGG 58.390 41.667 14.77 17.23 33.60 3.51
2621 2802 5.588648 GTGCATTACTTAGCTGTAAATGGGA 59.411 40.000 0.00 0.00 36.22 4.37
2622 2803 6.263168 GTGCATTACTTAGCTGTAAATGGGAT 59.737 38.462 0.00 0.00 36.22 3.85
2623 2804 7.444183 GTGCATTACTTAGCTGTAAATGGGATA 59.556 37.037 0.00 0.00 36.22 2.59
2624 2805 8.163408 TGCATTACTTAGCTGTAAATGGGATAT 58.837 33.333 0.00 0.00 36.22 1.63
2625 2806 8.454106 GCATTACTTAGCTGTAAATGGGATATG 58.546 37.037 0.00 0.00 36.22 1.78
2626 2807 7.979444 TTACTTAGCTGTAAATGGGATATGC 57.021 36.000 0.00 0.00 30.48 3.14
2627 2808 4.997395 ACTTAGCTGTAAATGGGATATGCG 59.003 41.667 0.00 0.00 0.00 4.73
2628 2809 3.492102 AGCTGTAAATGGGATATGCGT 57.508 42.857 0.00 0.00 0.00 5.24
2629 2810 3.141398 AGCTGTAAATGGGATATGCGTG 58.859 45.455 0.00 0.00 0.00 5.34
2630 2811 3.138304 GCTGTAAATGGGATATGCGTGA 58.862 45.455 0.00 0.00 0.00 4.35
2631 2812 3.753272 GCTGTAAATGGGATATGCGTGAT 59.247 43.478 0.00 0.00 0.00 3.06
2632 2813 4.378770 GCTGTAAATGGGATATGCGTGATG 60.379 45.833 0.00 0.00 0.00 3.07
2633 2814 4.713553 TGTAAATGGGATATGCGTGATGT 58.286 39.130 0.00 0.00 0.00 3.06
2634 2815 5.129634 TGTAAATGGGATATGCGTGATGTT 58.870 37.500 0.00 0.00 0.00 2.71
2635 2816 5.592282 TGTAAATGGGATATGCGTGATGTTT 59.408 36.000 0.00 0.00 0.00 2.83
2636 2817 5.596836 AAATGGGATATGCGTGATGTTTT 57.403 34.783 0.00 0.00 0.00 2.43
2637 2818 5.596836 AATGGGATATGCGTGATGTTTTT 57.403 34.783 0.00 0.00 0.00 1.94
2727 2908 8.587952 AAATGGAACTATTTAGTTGTTTGTGC 57.412 30.769 7.68 0.00 45.84 4.57
2728 2909 6.701145 TGGAACTATTTAGTTGTTTGTGCA 57.299 33.333 7.68 0.00 45.84 4.57
2729 2910 7.283625 TGGAACTATTTAGTTGTTTGTGCAT 57.716 32.000 7.68 0.00 45.84 3.96
2730 2911 7.721402 TGGAACTATTTAGTTGTTTGTGCATT 58.279 30.769 7.68 0.00 45.84 3.56
2731 2912 8.851145 TGGAACTATTTAGTTGTTTGTGCATTA 58.149 29.630 7.68 0.00 45.84 1.90
2732 2913 9.685828 GGAACTATTTAGTTGTTTGTGCATTAA 57.314 29.630 7.68 0.00 45.84 1.40
2737 2918 8.742554 ATTTAGTTGTTTGTGCATTAAGTAGC 57.257 30.769 0.00 0.00 0.00 3.58
2738 2919 7.504924 TTAGTTGTTTGTGCATTAAGTAGCT 57.495 32.000 0.00 0.00 0.00 3.32
2739 2920 5.762045 AGTTGTTTGTGCATTAAGTAGCTG 58.238 37.500 0.00 0.00 0.00 4.24
2740 2921 5.299279 AGTTGTTTGTGCATTAAGTAGCTGT 59.701 36.000 0.00 0.00 0.00 4.40
2741 2922 6.485313 AGTTGTTTGTGCATTAAGTAGCTGTA 59.515 34.615 0.00 0.00 0.00 2.74
2742 2923 6.869315 TGTTTGTGCATTAAGTAGCTGTAA 57.131 33.333 0.00 0.00 0.00 2.41
2743 2924 7.265647 TGTTTGTGCATTAAGTAGCTGTAAA 57.734 32.000 0.00 0.00 0.00 2.01
2744 2925 7.881142 TGTTTGTGCATTAAGTAGCTGTAAAT 58.119 30.769 0.00 0.00 0.00 1.40
2745 2926 7.807433 TGTTTGTGCATTAAGTAGCTGTAAATG 59.193 33.333 0.00 2.60 0.00 2.32
2746 2927 6.435430 TGTGCATTAAGTAGCTGTAAATGG 57.565 37.500 0.00 0.00 0.00 3.16
2747 2928 5.356751 TGTGCATTAAGTAGCTGTAAATGGG 59.643 40.000 0.00 0.00 0.00 4.00
2748 2929 5.588648 GTGCATTAAGTAGCTGTAAATGGGA 59.411 40.000 0.00 0.00 0.00 4.37
2749 2930 6.263168 GTGCATTAAGTAGCTGTAAATGGGAT 59.737 38.462 0.00 0.00 0.00 3.85
2750 2931 7.444183 GTGCATTAAGTAGCTGTAAATGGGATA 59.556 37.037 0.00 0.00 0.00 2.59
2751 2932 8.163408 TGCATTAAGTAGCTGTAAATGGGATAT 58.837 33.333 0.00 0.00 0.00 1.63
2752 2933 9.014297 GCATTAAGTAGCTGTAAATGGGATATT 57.986 33.333 0.00 0.00 0.00 1.28
2760 2941 8.766994 AGCTGTAAATGGGATATTATGTTTGT 57.233 30.769 0.00 0.00 0.00 2.83
2761 2942 9.200817 AGCTGTAAATGGGATATTATGTTTGTT 57.799 29.630 0.00 0.00 0.00 2.83
2762 2943 9.816354 GCTGTAAATGGGATATTATGTTTGTTT 57.184 29.630 0.00 0.00 0.00 2.83
2778 2959 8.592105 ATGTTTGTTTGTTCATTACATTCCAG 57.408 30.769 0.00 0.00 36.44 3.86
2779 2960 7.551585 TGTTTGTTTGTTCATTACATTCCAGT 58.448 30.769 0.00 0.00 36.44 4.00
2780 2961 8.687242 TGTTTGTTTGTTCATTACATTCCAGTA 58.313 29.630 0.00 0.00 36.44 2.74
2781 2962 9.522804 GTTTGTTTGTTCATTACATTCCAGTAA 57.477 29.630 0.00 0.00 36.44 2.24
2784 2965 9.689976 TGTTTGTTCATTACATTCCAGTAAATG 57.310 29.630 0.00 0.00 41.46 2.32
2785 2966 9.139174 GTTTGTTCATTACATTCCAGTAAATGG 57.861 33.333 2.11 0.00 43.04 3.16
2786 2967 7.319646 TTGTTCATTACATTCCAGTAAATGGC 58.680 34.615 2.11 0.00 42.10 4.40
2787 2968 7.039434 TTGTTCATTACATTCCAGTAAATGGCA 60.039 33.333 0.00 0.00 42.10 4.92
2799 2980 7.281040 CCAGTAAATGGCAATTATCTGATGT 57.719 36.000 18.33 0.00 43.83 3.06
2800 2981 7.719483 CCAGTAAATGGCAATTATCTGATGTT 58.281 34.615 18.33 0.00 43.83 2.71
2801 2982 8.199449 CCAGTAAATGGCAATTATCTGATGTTT 58.801 33.333 18.33 3.95 43.83 2.83
2802 2983 9.027129 CAGTAAATGGCAATTATCTGATGTTTG 57.973 33.333 14.45 5.39 32.78 2.93
2803 2984 8.752187 AGTAAATGGCAATTATCTGATGTTTGT 58.248 29.630 0.00 0.00 0.00 2.83
2804 2985 7.837202 AAATGGCAATTATCTGATGTTTGTG 57.163 32.000 0.00 0.00 0.00 3.33
2805 2986 4.746729 TGGCAATTATCTGATGTTTGTGC 58.253 39.130 0.00 3.24 0.00 4.57
2806 2987 4.220163 TGGCAATTATCTGATGTTTGTGCA 59.780 37.500 0.00 0.00 0.00 4.57
2807 2988 5.105269 TGGCAATTATCTGATGTTTGTGCAT 60.105 36.000 0.00 0.00 0.00 3.96
2808 2989 5.813672 GGCAATTATCTGATGTTTGTGCATT 59.186 36.000 0.00 0.00 0.00 3.56
2809 2990 6.979817 GGCAATTATCTGATGTTTGTGCATTA 59.020 34.615 0.00 0.00 0.00 1.90
2810 2991 7.043192 GGCAATTATCTGATGTTTGTGCATTAC 60.043 37.037 0.00 0.00 0.00 1.89
2811 2992 7.703621 GCAATTATCTGATGTTTGTGCATTACT 59.296 33.333 0.00 0.00 0.00 2.24
2812 2993 9.577110 CAATTATCTGATGTTTGTGCATTACTT 57.423 29.630 0.00 0.00 0.00 2.24
2935 3116 7.144661 TGGAACTATTTAGTTGTTTGTGCATG 58.855 34.615 7.68 0.00 45.84 4.06
2983 3164 8.592105 ATGTTTGTTTGTTCATTACATTCCAG 57.408 30.769 0.00 0.00 36.44 3.86
2984 3165 7.551585 TGTTTGTTTGTTCATTACATTCCAGT 58.448 30.769 0.00 0.00 36.44 4.00
2985 3166 8.687242 TGTTTGTTTGTTCATTACATTCCAGTA 58.313 29.630 0.00 0.00 36.44 2.74
2986 3167 9.522804 GTTTGTTTGTTCATTACATTCCAGTAA 57.477 29.630 0.00 0.00 36.44 2.24
2989 3170 9.689976 TGTTTGTTCATTACATTCCAGTAAATG 57.310 29.630 0.00 0.00 41.46 2.32
2990 3171 9.139174 GTTTGTTCATTACATTCCAGTAAATGG 57.861 33.333 2.11 0.00 43.04 3.16
2991 3172 7.319646 TTGTTCATTACATTCCAGTAAATGGC 58.680 34.615 2.11 0.00 42.10 4.40
2992 3173 7.039434 TTGTTCATTACATTCCAGTAAATGGCA 60.039 33.333 0.00 0.00 42.10 4.92
3619 4017 4.450757 TCGTATGGTTGTGAACTGTGAATG 59.549 41.667 0.00 0.00 0.00 2.67
3678 4076 9.809395 AGTATGGCAGACTATTAAGTACTATGA 57.191 33.333 14.04 0.00 35.56 2.15
4025 4426 8.555166 TTTTTGTCAATGTTCTTAAGTTAGCG 57.445 30.769 1.63 0.00 0.00 4.26
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 9.784531 CTATATCCATGTGTATTCCTTTTCAGT 57.215 33.333 0.00 0.00 0.00 3.41
30 31 8.940952 GCTCTATATCCATGTGTATTCCTTTTC 58.059 37.037 0.00 0.00 0.00 2.29
31 32 7.885399 GGCTCTATATCCATGTGTATTCCTTTT 59.115 37.037 0.00 0.00 0.00 2.27
32 33 7.017551 TGGCTCTATATCCATGTGTATTCCTTT 59.982 37.037 0.00 0.00 0.00 3.11
33 34 6.501805 TGGCTCTATATCCATGTGTATTCCTT 59.498 38.462 0.00 0.00 0.00 3.36
34 35 6.025539 TGGCTCTATATCCATGTGTATTCCT 58.974 40.000 0.00 0.00 0.00 3.36
35 36 6.299805 TGGCTCTATATCCATGTGTATTCC 57.700 41.667 0.00 0.00 0.00 3.01
44 45 7.746243 ATAAGTGTCATGGCTCTATATCCAT 57.254 36.000 1.71 0.00 43.45 3.41
45 46 7.559335 AATAAGTGTCATGGCTCTATATCCA 57.441 36.000 1.71 0.00 36.70 3.41
46 47 8.725148 CAAAATAAGTGTCATGGCTCTATATCC 58.275 37.037 1.71 0.00 0.00 2.59
47 48 8.725148 CCAAAATAAGTGTCATGGCTCTATATC 58.275 37.037 1.71 0.00 0.00 1.63
48 49 7.667219 CCCAAAATAAGTGTCATGGCTCTATAT 59.333 37.037 1.71 1.26 0.00 0.86
49 50 6.998074 CCCAAAATAAGTGTCATGGCTCTATA 59.002 38.462 1.71 0.00 0.00 1.31
50 51 5.829924 CCCAAAATAAGTGTCATGGCTCTAT 59.170 40.000 1.71 0.00 0.00 1.98
51 52 5.045213 TCCCAAAATAAGTGTCATGGCTCTA 60.045 40.000 1.71 0.00 0.00 2.43
52 53 4.019174 CCCAAAATAAGTGTCATGGCTCT 58.981 43.478 0.00 0.00 0.00 4.09
53 54 4.016444 TCCCAAAATAAGTGTCATGGCTC 58.984 43.478 0.00 0.00 0.00 4.70
54 55 3.763897 GTCCCAAAATAAGTGTCATGGCT 59.236 43.478 0.00 0.00 0.00 4.75
55 56 3.427503 CGTCCCAAAATAAGTGTCATGGC 60.428 47.826 0.00 0.00 0.00 4.40
56 57 3.128589 CCGTCCCAAAATAAGTGTCATGG 59.871 47.826 0.00 0.00 0.00 3.66
57 58 4.006989 TCCGTCCCAAAATAAGTGTCATG 58.993 43.478 0.00 0.00 0.00 3.07
58 59 4.261801 CTCCGTCCCAAAATAAGTGTCAT 58.738 43.478 0.00 0.00 0.00 3.06
59 60 3.558321 CCTCCGTCCCAAAATAAGTGTCA 60.558 47.826 0.00 0.00 0.00 3.58
60 61 3.007635 CCTCCGTCCCAAAATAAGTGTC 58.992 50.000 0.00 0.00 0.00 3.67
61 62 2.290705 CCCTCCGTCCCAAAATAAGTGT 60.291 50.000 0.00 0.00 0.00 3.55
62 63 2.026636 TCCCTCCGTCCCAAAATAAGTG 60.027 50.000 0.00 0.00 0.00 3.16
63 64 2.238898 CTCCCTCCGTCCCAAAATAAGT 59.761 50.000 0.00 0.00 0.00 2.24
64 65 2.238898 ACTCCCTCCGTCCCAAAATAAG 59.761 50.000 0.00 0.00 0.00 1.73
65 66 2.271777 ACTCCCTCCGTCCCAAAATAA 58.728 47.619 0.00 0.00 0.00 1.40
66 67 1.961133 ACTCCCTCCGTCCCAAAATA 58.039 50.000 0.00 0.00 0.00 1.40
67 68 1.558294 GTACTCCCTCCGTCCCAAAAT 59.442 52.381 0.00 0.00 0.00 1.82
68 69 0.978907 GTACTCCCTCCGTCCCAAAA 59.021 55.000 0.00 0.00 0.00 2.44
69 70 0.178926 TGTACTCCCTCCGTCCCAAA 60.179 55.000 0.00 0.00 0.00 3.28
70 71 0.042131 ATGTACTCCCTCCGTCCCAA 59.958 55.000 0.00 0.00 0.00 4.12
71 72 0.396695 GATGTACTCCCTCCGTCCCA 60.397 60.000 0.00 0.00 0.00 4.37
72 73 0.106116 AGATGTACTCCCTCCGTCCC 60.106 60.000 0.00 0.00 0.00 4.46
73 74 1.133730 AGAGATGTACTCCCTCCGTCC 60.134 57.143 0.00 0.00 45.96 4.79
74 75 2.351706 AGAGATGTACTCCCTCCGTC 57.648 55.000 0.00 0.00 45.96 4.79
75 76 2.379972 CAAGAGATGTACTCCCTCCGT 58.620 52.381 0.00 0.00 45.96 4.69
76 77 1.067821 GCAAGAGATGTACTCCCTCCG 59.932 57.143 0.00 0.00 45.96 4.63
77 78 2.393646 AGCAAGAGATGTACTCCCTCC 58.606 52.381 0.00 0.00 45.96 4.30
78 79 3.449018 TGAAGCAAGAGATGTACTCCCTC 59.551 47.826 0.00 0.00 45.96 4.30
79 80 3.445008 TGAAGCAAGAGATGTACTCCCT 58.555 45.455 0.00 0.00 45.96 4.20
80 81 3.895232 TGAAGCAAGAGATGTACTCCC 57.105 47.619 0.00 0.00 45.96 4.30
81 82 4.569966 CACATGAAGCAAGAGATGTACTCC 59.430 45.833 0.00 0.00 45.96 3.85
82 83 5.174395 ACACATGAAGCAAGAGATGTACTC 58.826 41.667 0.00 0.00 45.22 2.59
83 84 5.157940 ACACATGAAGCAAGAGATGTACT 57.842 39.130 0.00 0.00 0.00 2.73
84 85 6.102663 AGTACACATGAAGCAAGAGATGTAC 58.897 40.000 0.00 3.81 40.80 2.90
85 86 6.286240 AGTACACATGAAGCAAGAGATGTA 57.714 37.500 0.00 0.00 0.00 2.29
86 87 5.157940 AGTACACATGAAGCAAGAGATGT 57.842 39.130 0.00 0.00 0.00 3.06
87 88 6.492007 AAAGTACACATGAAGCAAGAGATG 57.508 37.500 0.00 0.00 0.00 2.90
88 89 7.229306 TGAAAAAGTACACATGAAGCAAGAGAT 59.771 33.333 0.00 0.00 0.00 2.75
89 90 6.542005 TGAAAAAGTACACATGAAGCAAGAGA 59.458 34.615 0.00 0.00 0.00 3.10
90 91 6.728200 TGAAAAAGTACACATGAAGCAAGAG 58.272 36.000 0.00 0.00 0.00 2.85
91 92 6.542005 TCTGAAAAAGTACACATGAAGCAAGA 59.458 34.615 0.00 0.00 0.00 3.02
92 93 6.728200 TCTGAAAAAGTACACATGAAGCAAG 58.272 36.000 0.00 0.00 0.00 4.01
93 94 6.691754 TCTGAAAAAGTACACATGAAGCAA 57.308 33.333 0.00 0.00 0.00 3.91
94 95 6.691754 TTCTGAAAAAGTACACATGAAGCA 57.308 33.333 0.00 0.00 0.00 3.91
95 96 9.846248 AATATTCTGAAAAAGTACACATGAAGC 57.154 29.630 0.00 0.00 0.00 3.86
112 113 8.846943 TACTTTGCAGTTTCAGAATATTCTGA 57.153 30.769 34.29 34.29 46.15 3.27
113 114 9.499585 CATACTTTGCAGTTTCAGAATATTCTG 57.500 33.333 31.42 31.42 43.72 3.02
130 131 4.719916 GGCTCCATGCAGCATACTTTGC 62.720 54.545 11.53 8.31 44.66 3.68
131 132 1.066605 GGCTCCATGCAGCATACTTTG 59.933 52.381 11.53 0.00 45.15 2.77
132 133 1.396653 GGCTCCATGCAGCATACTTT 58.603 50.000 11.53 0.00 45.15 2.66
133 134 0.466922 GGGCTCCATGCAGCATACTT 60.467 55.000 11.53 0.00 45.15 2.24
134 135 1.150081 GGGCTCCATGCAGCATACT 59.850 57.895 11.53 0.00 45.15 2.12
135 136 2.256591 CGGGCTCCATGCAGCATAC 61.257 63.158 11.53 0.00 45.15 2.39
136 137 1.771783 ATCGGGCTCCATGCAGCATA 61.772 55.000 11.53 0.00 45.15 3.14
137 138 3.129362 ATCGGGCTCCATGCAGCAT 62.129 57.895 11.53 0.52 45.15 3.79
138 139 3.762429 GATCGGGCTCCATGCAGCA 62.762 63.158 11.53 0.00 45.15 4.41
139 140 2.976903 GATCGGGCTCCATGCAGC 60.977 66.667 0.00 0.00 45.15 5.25
140 141 1.301558 GAGATCGGGCTCCATGCAG 60.302 63.158 0.00 0.00 45.15 4.41
141 142 0.469892 TAGAGATCGGGCTCCATGCA 60.470 55.000 0.00 0.00 45.15 3.96
142 143 0.901124 ATAGAGATCGGGCTCCATGC 59.099 55.000 2.46 0.00 41.94 4.06
143 144 3.131933 CCTAATAGAGATCGGGCTCCATG 59.868 52.174 2.46 0.00 35.49 3.66
144 145 3.011821 TCCTAATAGAGATCGGGCTCCAT 59.988 47.826 2.46 0.00 35.49 3.41
145 146 2.378886 TCCTAATAGAGATCGGGCTCCA 59.621 50.000 2.46 0.00 35.49 3.86
146 147 3.088789 TCCTAATAGAGATCGGGCTCC 57.911 52.381 2.46 0.00 35.49 4.70
147 148 5.669164 AATTCCTAATAGAGATCGGGCTC 57.331 43.478 0.00 0.00 35.11 4.70
148 149 5.046231 GGAAATTCCTAATAGAGATCGGGCT 60.046 44.000 4.46 0.00 32.53 5.19
149 150 5.179533 GGAAATTCCTAATAGAGATCGGGC 58.820 45.833 4.46 0.00 32.53 6.13
150 151 5.411781 CGGAAATTCCTAATAGAGATCGGG 58.588 45.833 10.64 0.00 33.30 5.14
151 152 4.865365 GCGGAAATTCCTAATAGAGATCGG 59.135 45.833 10.64 0.00 33.30 4.18
152 153 5.715070 AGCGGAAATTCCTAATAGAGATCG 58.285 41.667 10.64 0.00 33.30 3.69
153 154 6.930731 AGAGCGGAAATTCCTAATAGAGATC 58.069 40.000 10.64 1.00 33.30 2.75
154 155 6.926630 AGAGCGGAAATTCCTAATAGAGAT 57.073 37.500 10.64 0.00 33.30 2.75
155 156 6.732896 AAGAGCGGAAATTCCTAATAGAGA 57.267 37.500 10.64 0.00 33.30 3.10
156 157 8.888579 TTAAAGAGCGGAAATTCCTAATAGAG 57.111 34.615 10.64 0.00 33.30 2.43
157 158 7.931948 CCTTAAAGAGCGGAAATTCCTAATAGA 59.068 37.037 10.64 0.00 33.30 1.98
158 159 7.715686 ACCTTAAAGAGCGGAAATTCCTAATAG 59.284 37.037 10.64 0.00 33.30 1.73
159 160 7.497909 CACCTTAAAGAGCGGAAATTCCTAATA 59.502 37.037 10.64 0.00 33.30 0.98
160 161 6.318900 CACCTTAAAGAGCGGAAATTCCTAAT 59.681 38.462 10.64 0.00 33.30 1.73
161 162 5.646360 CACCTTAAAGAGCGGAAATTCCTAA 59.354 40.000 10.64 0.22 33.30 2.69
162 163 5.183228 CACCTTAAAGAGCGGAAATTCCTA 58.817 41.667 10.64 0.00 33.30 2.94
163 164 4.010349 CACCTTAAAGAGCGGAAATTCCT 58.990 43.478 10.64 0.00 33.30 3.36
164 165 3.427638 GCACCTTAAAGAGCGGAAATTCC 60.428 47.826 0.99 0.99 0.00 3.01
165 166 3.440522 AGCACCTTAAAGAGCGGAAATTC 59.559 43.478 0.00 0.00 0.00 2.17
166 167 3.421844 AGCACCTTAAAGAGCGGAAATT 58.578 40.909 0.00 0.00 0.00 1.82
167 168 3.073274 AGCACCTTAAAGAGCGGAAAT 57.927 42.857 0.00 0.00 0.00 2.17
168 169 2.561478 AGCACCTTAAAGAGCGGAAA 57.439 45.000 0.00 0.00 0.00 3.13
169 170 2.565834 AGTAGCACCTTAAAGAGCGGAA 59.434 45.455 0.00 0.00 0.00 4.30
170 171 2.176889 AGTAGCACCTTAAAGAGCGGA 58.823 47.619 0.00 0.00 0.00 5.54
171 172 2.674796 AGTAGCACCTTAAAGAGCGG 57.325 50.000 0.00 0.00 0.00 5.52
172 173 7.705325 TCTTATTTAGTAGCACCTTAAAGAGCG 59.295 37.037 0.00 0.00 0.00 5.03
173 174 8.943909 TCTTATTTAGTAGCACCTTAAAGAGC 57.056 34.615 0.00 0.00 0.00 4.09
177 178 9.969001 ACCATTCTTATTTAGTAGCACCTTAAA 57.031 29.630 0.00 0.00 0.00 1.52
178 179 9.609346 GACCATTCTTATTTAGTAGCACCTTAA 57.391 33.333 0.00 0.00 0.00 1.85
179 180 8.989131 AGACCATTCTTATTTAGTAGCACCTTA 58.011 33.333 0.00 0.00 0.00 2.69
180 181 7.770897 CAGACCATTCTTATTTAGTAGCACCTT 59.229 37.037 0.00 0.00 0.00 3.50
181 182 7.092846 ACAGACCATTCTTATTTAGTAGCACCT 60.093 37.037 0.00 0.00 0.00 4.00
182 183 7.011482 CACAGACCATTCTTATTTAGTAGCACC 59.989 40.741 0.00 0.00 0.00 5.01
183 184 7.549488 ACACAGACCATTCTTATTTAGTAGCAC 59.451 37.037 0.00 0.00 0.00 4.40
184 185 7.549134 CACACAGACCATTCTTATTTAGTAGCA 59.451 37.037 0.00 0.00 0.00 3.49
185 186 7.011482 CCACACAGACCATTCTTATTTAGTAGC 59.989 40.741 0.00 0.00 0.00 3.58
186 187 7.011482 GCCACACAGACCATTCTTATTTAGTAG 59.989 40.741 0.00 0.00 0.00 2.57
187 188 6.821665 GCCACACAGACCATTCTTATTTAGTA 59.178 38.462 0.00 0.00 0.00 1.82
188 189 5.648092 GCCACACAGACCATTCTTATTTAGT 59.352 40.000 0.00 0.00 0.00 2.24
189 190 5.647658 TGCCACACAGACCATTCTTATTTAG 59.352 40.000 0.00 0.00 0.00 1.85
190 191 5.565509 TGCCACACAGACCATTCTTATTTA 58.434 37.500 0.00 0.00 0.00 1.40
191 192 4.406456 TGCCACACAGACCATTCTTATTT 58.594 39.130 0.00 0.00 0.00 1.40
192 193 4.032960 TGCCACACAGACCATTCTTATT 57.967 40.909 0.00 0.00 0.00 1.40
193 194 3.719268 TGCCACACAGACCATTCTTAT 57.281 42.857 0.00 0.00 0.00 1.73
194 195 3.072330 TCTTGCCACACAGACCATTCTTA 59.928 43.478 0.00 0.00 0.00 2.10
195 196 2.158623 TCTTGCCACACAGACCATTCTT 60.159 45.455 0.00 0.00 0.00 2.52
196 197 1.421268 TCTTGCCACACAGACCATTCT 59.579 47.619 0.00 0.00 0.00 2.40
197 198 1.896220 TCTTGCCACACAGACCATTC 58.104 50.000 0.00 0.00 0.00 2.67
198 199 2.363306 TTCTTGCCACACAGACCATT 57.637 45.000 0.00 0.00 0.00 3.16
199 200 2.559668 CAATTCTTGCCACACAGACCAT 59.440 45.455 0.00 0.00 0.00 3.55
200 201 1.955778 CAATTCTTGCCACACAGACCA 59.044 47.619 0.00 0.00 0.00 4.02
201 202 2.712057 CAATTCTTGCCACACAGACC 57.288 50.000 0.00 0.00 0.00 3.85
212 213 9.713740 GAGATATTTGTTCTGTAGCAATTCTTG 57.286 33.333 0.00 0.00 0.00 3.02
213 214 9.678260 AGAGATATTTGTTCTGTAGCAATTCTT 57.322 29.630 0.00 0.00 0.00 2.52
214 215 9.678260 AAGAGATATTTGTTCTGTAGCAATTCT 57.322 29.630 0.00 0.00 0.00 2.40
219 220 9.719355 TGTTTAAGAGATATTTGTTCTGTAGCA 57.281 29.630 0.00 0.00 0.00 3.49
220 221 9.974750 GTGTTTAAGAGATATTTGTTCTGTAGC 57.025 33.333 0.00 0.00 0.00 3.58
228 229 9.003658 CCAGTGAAGTGTTTAAGAGATATTTGT 57.996 33.333 0.00 0.00 0.00 2.83
229 230 8.454106 CCCAGTGAAGTGTTTAAGAGATATTTG 58.546 37.037 0.00 0.00 0.00 2.32
230 231 7.121315 GCCCAGTGAAGTGTTTAAGAGATATTT 59.879 37.037 0.00 0.00 0.00 1.40
231 232 6.599638 GCCCAGTGAAGTGTTTAAGAGATATT 59.400 38.462 0.00 0.00 0.00 1.28
232 233 6.116126 GCCCAGTGAAGTGTTTAAGAGATAT 58.884 40.000 0.00 0.00 0.00 1.63
233 234 5.488341 GCCCAGTGAAGTGTTTAAGAGATA 58.512 41.667 0.00 0.00 0.00 1.98
234 235 4.327680 GCCCAGTGAAGTGTTTAAGAGAT 58.672 43.478 0.00 0.00 0.00 2.75
235 236 3.740115 GCCCAGTGAAGTGTTTAAGAGA 58.260 45.455 0.00 0.00 0.00 3.10
236 237 2.480419 CGCCCAGTGAAGTGTTTAAGAG 59.520 50.000 0.00 0.00 0.00 2.85
237 238 2.103432 TCGCCCAGTGAAGTGTTTAAGA 59.897 45.455 0.00 0.00 0.00 2.10
238 239 2.489971 TCGCCCAGTGAAGTGTTTAAG 58.510 47.619 0.00 0.00 0.00 1.85
239 240 2.614983 GTTCGCCCAGTGAAGTGTTTAA 59.385 45.455 0.00 0.00 32.53 1.52
240 241 2.215196 GTTCGCCCAGTGAAGTGTTTA 58.785 47.619 0.00 0.00 32.53 2.01
241 242 1.021968 GTTCGCCCAGTGAAGTGTTT 58.978 50.000 0.00 0.00 32.53 2.83
242 243 0.818040 GGTTCGCCCAGTGAAGTGTT 60.818 55.000 0.00 0.00 32.53 3.32
243 244 1.227853 GGTTCGCCCAGTGAAGTGT 60.228 57.895 0.00 0.00 32.53 3.55
244 245 2.317609 CGGTTCGCCCAGTGAAGTG 61.318 63.158 0.00 0.00 32.53 3.16
245 246 2.030562 CGGTTCGCCCAGTGAAGT 59.969 61.111 0.00 0.00 32.53 3.01
246 247 0.882927 TTTCGGTTCGCCCAGTGAAG 60.883 55.000 0.00 0.00 32.53 3.02
247 248 0.250553 ATTTCGGTTCGCCCAGTGAA 60.251 50.000 0.00 0.00 0.00 3.18
248 249 0.250553 AATTTCGGTTCGCCCAGTGA 60.251 50.000 0.00 0.00 0.00 3.41
249 250 1.129811 GTAATTTCGGTTCGCCCAGTG 59.870 52.381 0.00 0.00 0.00 3.66
250 251 1.445871 GTAATTTCGGTTCGCCCAGT 58.554 50.000 0.00 0.00 0.00 4.00
251 252 0.730840 GGTAATTTCGGTTCGCCCAG 59.269 55.000 0.00 0.00 0.00 4.45
252 253 0.677414 GGGTAATTTCGGTTCGCCCA 60.677 55.000 0.00 0.00 34.95 5.36
253 254 0.677414 TGGGTAATTTCGGTTCGCCC 60.677 55.000 0.00 0.00 35.37 6.13
254 255 1.166989 TTGGGTAATTTCGGTTCGCC 58.833 50.000 0.00 0.00 0.00 5.54
255 256 2.162809 ACATTGGGTAATTTCGGTTCGC 59.837 45.455 0.00 0.00 0.00 4.70
256 257 3.181504 GGACATTGGGTAATTTCGGTTCG 60.182 47.826 0.00 0.00 0.00 3.95
257 258 3.759618 TGGACATTGGGTAATTTCGGTTC 59.240 43.478 0.00 0.00 0.00 3.62
258 259 3.508402 GTGGACATTGGGTAATTTCGGTT 59.492 43.478 0.00 0.00 0.00 4.44
259 260 3.086282 GTGGACATTGGGTAATTTCGGT 58.914 45.455 0.00 0.00 0.00 4.69
260 261 3.352648 AGTGGACATTGGGTAATTTCGG 58.647 45.455 0.00 0.00 0.00 4.30
261 262 5.646360 AGTAAGTGGACATTGGGTAATTTCG 59.354 40.000 0.00 0.00 0.00 3.46
262 263 7.312899 CAAGTAAGTGGACATTGGGTAATTTC 58.687 38.462 0.00 0.00 0.00 2.17
263 264 6.295067 GCAAGTAAGTGGACATTGGGTAATTT 60.295 38.462 0.00 0.00 0.00 1.82
264 265 5.185056 GCAAGTAAGTGGACATTGGGTAATT 59.815 40.000 0.00 0.00 0.00 1.40
265 266 4.705023 GCAAGTAAGTGGACATTGGGTAAT 59.295 41.667 0.00 0.00 0.00 1.89
266 267 4.076394 GCAAGTAAGTGGACATTGGGTAA 58.924 43.478 0.00 0.00 0.00 2.85
267 268 3.073209 TGCAAGTAAGTGGACATTGGGTA 59.927 43.478 0.00 0.00 0.00 3.69
268 269 2.158534 TGCAAGTAAGTGGACATTGGGT 60.159 45.455 0.00 0.00 0.00 4.51
269 270 2.513753 TGCAAGTAAGTGGACATTGGG 58.486 47.619 0.00 0.00 0.00 4.12
270 271 4.582701 TTTGCAAGTAAGTGGACATTGG 57.417 40.909 0.00 0.00 0.00 3.16
271 272 5.591099 ACTTTTGCAAGTAAGTGGACATTG 58.409 37.500 14.28 0.00 41.81 2.82
272 273 5.852282 ACTTTTGCAAGTAAGTGGACATT 57.148 34.783 14.28 0.00 41.81 2.71
273 274 5.852282 AACTTTTGCAAGTAAGTGGACAT 57.148 34.783 15.46 0.00 42.89 3.06
274 275 5.047660 ACAAACTTTTGCAAGTAAGTGGACA 60.048 36.000 15.46 0.00 42.89 4.02
275 276 5.407502 ACAAACTTTTGCAAGTAAGTGGAC 58.592 37.500 15.46 0.00 42.89 4.02
276 277 5.652994 ACAAACTTTTGCAAGTAAGTGGA 57.347 34.783 15.46 0.00 42.89 4.02
277 278 8.964150 GTTATACAAACTTTTGCAAGTAAGTGG 58.036 33.333 15.46 13.21 42.89 4.00
278 279 9.730420 AGTTATACAAACTTTTGCAAGTAAGTG 57.270 29.630 15.46 8.15 42.89 3.16
283 284 8.899771 ACAGTAGTTATACAAACTTTTGCAAGT 58.100 29.630 0.00 0.00 41.79 3.16
284 285 9.730420 AACAGTAGTTATACAAACTTTTGCAAG 57.270 29.630 0.00 0.00 37.69 4.01
295 296 9.647797 CACACTCCATAAACAGTAGTTATACAA 57.352 33.333 0.00 0.00 36.84 2.41
296 297 9.027202 TCACACTCCATAAACAGTAGTTATACA 57.973 33.333 0.00 0.00 36.84 2.29
297 298 9.865321 TTCACACTCCATAAACAGTAGTTATAC 57.135 33.333 0.00 0.00 36.84 1.47
299 300 9.436957 CTTTCACACTCCATAAACAGTAGTTAT 57.563 33.333 0.00 0.00 36.84 1.89
300 301 7.386848 GCTTTCACACTCCATAAACAGTAGTTA 59.613 37.037 0.00 0.00 36.84 2.24
301 302 6.204882 GCTTTCACACTCCATAAACAGTAGTT 59.795 38.462 0.00 0.00 40.40 2.24
302 303 5.701290 GCTTTCACACTCCATAAACAGTAGT 59.299 40.000 0.00 0.00 0.00 2.73
303 304 5.700832 TGCTTTCACACTCCATAAACAGTAG 59.299 40.000 0.00 0.00 0.00 2.57
304 305 5.468746 GTGCTTTCACACTCCATAAACAGTA 59.531 40.000 0.00 0.00 42.66 2.74
305 306 4.275936 GTGCTTTCACACTCCATAAACAGT 59.724 41.667 0.00 0.00 42.66 3.55
306 307 4.787598 GTGCTTTCACACTCCATAAACAG 58.212 43.478 0.00 0.00 42.66 3.16
307 308 4.829064 GTGCTTTCACACTCCATAAACA 57.171 40.909 0.00 0.00 42.66 2.83
317 318 7.584987 ACAACAGATAATTAGTGCTTTCACAC 58.415 34.615 0.00 0.00 45.49 3.82
318 319 7.744087 ACAACAGATAATTAGTGCTTTCACA 57.256 32.000 0.00 0.00 45.49 3.58
340 341 9.537192 CGGACCTATATTTTTCACTGTTATACA 57.463 33.333 0.00 0.00 0.00 2.29
341 342 8.493547 GCGGACCTATATTTTTCACTGTTATAC 58.506 37.037 0.00 0.00 0.00 1.47
342 343 7.658575 GGCGGACCTATATTTTTCACTGTTATA 59.341 37.037 0.00 0.00 0.00 0.98
343 344 6.485648 GGCGGACCTATATTTTTCACTGTTAT 59.514 38.462 0.00 0.00 0.00 1.89
344 345 5.818857 GGCGGACCTATATTTTTCACTGTTA 59.181 40.000 0.00 0.00 0.00 2.41
345 346 4.638865 GGCGGACCTATATTTTTCACTGTT 59.361 41.667 0.00 0.00 0.00 3.16
346 347 4.196971 GGCGGACCTATATTTTTCACTGT 58.803 43.478 0.00 0.00 0.00 3.55
347 348 3.564225 GGGCGGACCTATATTTTTCACTG 59.436 47.826 0.00 0.00 35.85 3.66
348 349 3.434596 GGGGCGGACCTATATTTTTCACT 60.435 47.826 0.00 0.00 40.03 3.41
349 350 2.882761 GGGGCGGACCTATATTTTTCAC 59.117 50.000 0.00 0.00 40.03 3.18
350 351 2.781174 AGGGGCGGACCTATATTTTTCA 59.219 45.455 0.00 0.00 39.65 2.69
351 352 3.146847 CAGGGGCGGACCTATATTTTTC 58.853 50.000 0.00 0.00 39.34 2.29
352 353 2.158519 CCAGGGGCGGACCTATATTTTT 60.159 50.000 0.00 0.00 39.34 1.94
353 354 1.423921 CCAGGGGCGGACCTATATTTT 59.576 52.381 0.00 0.00 39.34 1.82
354 355 1.064825 CCAGGGGCGGACCTATATTT 58.935 55.000 0.00 0.00 39.34 1.40
355 356 0.104620 ACCAGGGGCGGACCTATATT 60.105 55.000 0.00 0.00 39.34 1.28
356 357 0.544595 GACCAGGGGCGGACCTATAT 60.545 60.000 0.00 0.00 39.34 0.86
357 358 1.152398 GACCAGGGGCGGACCTATA 60.152 63.158 0.00 0.00 39.34 1.31
358 359 2.446036 GACCAGGGGCGGACCTAT 60.446 66.667 0.00 0.00 39.34 2.57
359 360 4.000620 TGACCAGGGGCGGACCTA 62.001 66.667 0.00 0.00 39.34 3.08
362 363 3.901797 CTTGTGACCAGGGGCGGAC 62.902 68.421 0.00 0.00 0.00 4.79
363 364 3.636231 CTTGTGACCAGGGGCGGA 61.636 66.667 0.00 0.00 0.00 5.54
364 365 3.953775 ACTTGTGACCAGGGGCGG 61.954 66.667 0.00 0.00 0.00 6.13
365 366 2.669569 CACTTGTGACCAGGGGCG 60.670 66.667 0.00 0.00 0.00 6.13
366 367 2.282462 CCACTTGTGACCAGGGGC 60.282 66.667 1.89 0.00 0.00 5.80
367 368 1.488705 TAGCCACTTGTGACCAGGGG 61.489 60.000 0.00 0.00 0.00 4.79
368 369 0.620556 ATAGCCACTTGTGACCAGGG 59.379 55.000 1.89 0.00 0.00 4.45
369 370 1.278985 TCATAGCCACTTGTGACCAGG 59.721 52.381 1.89 0.00 0.00 4.45
370 371 2.768253 TCATAGCCACTTGTGACCAG 57.232 50.000 1.89 0.00 0.00 4.00
371 372 3.146066 GTTTCATAGCCACTTGTGACCA 58.854 45.455 1.89 0.00 0.00 4.02
372 373 2.488153 GGTTTCATAGCCACTTGTGACC 59.512 50.000 1.89 0.00 0.00 4.02
373 374 2.488153 GGGTTTCATAGCCACTTGTGAC 59.512 50.000 1.89 0.00 44.15 3.67
374 375 2.790433 GGGTTTCATAGCCACTTGTGA 58.210 47.619 1.89 0.00 44.15 3.58
382 383 2.633488 GAGTCAGTGGGTTTCATAGCC 58.367 52.381 0.00 0.00 45.01 3.93
383 384 2.237392 AGGAGTCAGTGGGTTTCATAGC 59.763 50.000 0.00 0.00 0.00 2.97
384 385 5.878406 ATAGGAGTCAGTGGGTTTCATAG 57.122 43.478 0.00 0.00 0.00 2.23
385 386 6.636454 AAATAGGAGTCAGTGGGTTTCATA 57.364 37.500 0.00 0.00 0.00 2.15
386 387 5.520748 AAATAGGAGTCAGTGGGTTTCAT 57.479 39.130 0.00 0.00 0.00 2.57
387 388 4.993705 AAATAGGAGTCAGTGGGTTTCA 57.006 40.909 0.00 0.00 0.00 2.69
388 389 5.048013 CCAAAAATAGGAGTCAGTGGGTTTC 60.048 44.000 0.00 0.00 0.00 2.78
389 390 4.832823 CCAAAAATAGGAGTCAGTGGGTTT 59.167 41.667 0.00 0.00 0.00 3.27
390 391 4.407365 CCAAAAATAGGAGTCAGTGGGTT 58.593 43.478 0.00 0.00 0.00 4.11
391 392 3.245264 CCCAAAAATAGGAGTCAGTGGGT 60.245 47.826 0.00 0.00 39.74 4.51
392 393 3.356290 CCCAAAAATAGGAGTCAGTGGG 58.644 50.000 0.00 0.00 38.64 4.61
393 394 4.010349 GACCCAAAAATAGGAGTCAGTGG 58.990 47.826 0.00 0.00 0.00 4.00
394 395 4.651778 TGACCCAAAAATAGGAGTCAGTG 58.348 43.478 0.00 0.00 33.98 3.66
395 396 4.993705 TGACCCAAAAATAGGAGTCAGT 57.006 40.909 0.00 0.00 33.98 3.41
396 397 6.889198 TCTATGACCCAAAAATAGGAGTCAG 58.111 40.000 0.00 0.00 38.67 3.51
397 398 6.884472 TCTATGACCCAAAAATAGGAGTCA 57.116 37.500 0.00 0.00 39.20 3.41
398 399 7.565680 TCTTCTATGACCCAAAAATAGGAGTC 58.434 38.462 0.00 0.00 33.10 3.36
399 400 7.182930 ACTCTTCTATGACCCAAAAATAGGAGT 59.817 37.037 0.00 0.00 33.10 3.85
400 401 7.569240 ACTCTTCTATGACCCAAAAATAGGAG 58.431 38.462 0.00 0.00 32.73 3.69
401 402 7.510675 ACTCTTCTATGACCCAAAAATAGGA 57.489 36.000 0.00 0.00 0.00 2.94
402 403 8.049721 AGAACTCTTCTATGACCCAAAAATAGG 58.950 37.037 0.00 0.00 38.49 2.57
403 404 9.454859 AAGAACTCTTCTATGACCCAAAAATAG 57.545 33.333 0.00 0.00 39.61 1.73
404 405 9.231297 CAAGAACTCTTCTATGACCCAAAAATA 57.769 33.333 0.00 0.00 39.61 1.40
405 406 7.177392 CCAAGAACTCTTCTATGACCCAAAAAT 59.823 37.037 0.00 0.00 39.61 1.82
406 407 6.490040 CCAAGAACTCTTCTATGACCCAAAAA 59.510 38.462 0.00 0.00 39.61 1.94
407 408 6.003950 CCAAGAACTCTTCTATGACCCAAAA 58.996 40.000 0.00 0.00 39.61 2.44
408 409 5.514834 CCCAAGAACTCTTCTATGACCCAAA 60.515 44.000 0.00 0.00 39.61 3.28
409 410 4.019321 CCCAAGAACTCTTCTATGACCCAA 60.019 45.833 0.00 0.00 39.61 4.12
410 411 3.519510 CCCAAGAACTCTTCTATGACCCA 59.480 47.826 0.00 0.00 39.61 4.51
411 412 3.519913 ACCCAAGAACTCTTCTATGACCC 59.480 47.826 0.00 0.00 39.61 4.46
412 413 4.828072 ACCCAAGAACTCTTCTATGACC 57.172 45.455 0.00 0.00 39.61 4.02
413 414 6.777213 TCTACCCAAGAACTCTTCTATGAC 57.223 41.667 0.00 0.00 39.61 3.06
414 415 6.897966 ACATCTACCCAAGAACTCTTCTATGA 59.102 38.462 0.00 0.00 39.61 2.15
415 416 7.118496 ACATCTACCCAAGAACTCTTCTATG 57.882 40.000 0.00 0.00 39.61 2.23
416 417 7.621683 AGAACATCTACCCAAGAACTCTTCTAT 59.378 37.037 0.00 0.00 39.61 1.98
417 418 6.954684 AGAACATCTACCCAAGAACTCTTCTA 59.045 38.462 0.00 0.00 39.61 2.10
418 419 5.782845 AGAACATCTACCCAAGAACTCTTCT 59.217 40.000 0.00 0.00 43.15 2.85
419 420 6.043854 AGAACATCTACCCAAGAACTCTTC 57.956 41.667 0.00 0.00 37.89 2.87
420 421 6.441088 AAGAACATCTACCCAAGAACTCTT 57.559 37.500 0.00 0.00 37.89 2.85
421 422 6.497259 TGTAAGAACATCTACCCAAGAACTCT 59.503 38.462 0.00 0.00 37.89 3.24
422 423 6.698380 TGTAAGAACATCTACCCAAGAACTC 58.302 40.000 0.00 0.00 37.89 3.01
423 424 6.681729 TGTAAGAACATCTACCCAAGAACT 57.318 37.500 0.00 0.00 37.89 3.01
437 438 4.992319 ACCATTTCGAACGATGTAAGAACA 59.008 37.500 0.00 0.00 40.69 3.18
438 439 5.526010 ACCATTTCGAACGATGTAAGAAC 57.474 39.130 0.00 0.00 0.00 3.01
439 440 5.577945 GGTACCATTTCGAACGATGTAAGAA 59.422 40.000 7.15 0.00 0.00 2.52
440 441 5.104374 GGTACCATTTCGAACGATGTAAGA 58.896 41.667 7.15 0.00 0.00 2.10
441 442 4.865925 TGGTACCATTTCGAACGATGTAAG 59.134 41.667 11.60 0.00 0.00 2.34
442 443 4.818642 TGGTACCATTTCGAACGATGTAA 58.181 39.130 11.60 0.00 0.00 2.41
443 444 4.453177 TGGTACCATTTCGAACGATGTA 57.547 40.909 11.60 0.00 0.00 2.29
444 445 3.322211 TGGTACCATTTCGAACGATGT 57.678 42.857 11.60 0.00 0.00 3.06
445 446 3.433957 TGTTGGTACCATTTCGAACGATG 59.566 43.478 17.17 0.00 0.00 3.84
446 447 3.434299 GTGTTGGTACCATTTCGAACGAT 59.566 43.478 17.17 0.00 0.00 3.73
447 448 2.801679 GTGTTGGTACCATTTCGAACGA 59.198 45.455 17.17 0.00 0.00 3.85
448 449 2.544686 TGTGTTGGTACCATTTCGAACG 59.455 45.455 17.17 0.00 0.00 3.95
449 450 3.605231 CGTGTGTTGGTACCATTTCGAAC 60.605 47.826 17.17 10.37 0.00 3.95
450 451 2.544686 CGTGTGTTGGTACCATTTCGAA 59.455 45.455 17.17 0.00 0.00 3.71
451 452 2.136728 CGTGTGTTGGTACCATTTCGA 58.863 47.619 17.17 0.00 0.00 3.71
452 453 1.399215 GCGTGTGTTGGTACCATTTCG 60.399 52.381 17.17 16.27 0.00 3.46
453 454 1.877443 AGCGTGTGTTGGTACCATTTC 59.123 47.619 17.17 10.11 0.00 2.17
454 455 1.877443 GAGCGTGTGTTGGTACCATTT 59.123 47.619 17.17 0.00 0.00 2.32
455 456 1.202710 TGAGCGTGTGTTGGTACCATT 60.203 47.619 17.17 0.00 0.00 3.16
456 457 0.394938 TGAGCGTGTGTTGGTACCAT 59.605 50.000 17.17 0.00 0.00 3.55
457 458 0.394938 ATGAGCGTGTGTTGGTACCA 59.605 50.000 11.60 11.60 0.00 3.25
458 459 0.796312 CATGAGCGTGTGTTGGTACC 59.204 55.000 4.43 4.43 0.00 3.34
459 460 0.796312 CCATGAGCGTGTGTTGGTAC 59.204 55.000 0.00 0.00 0.00 3.34
460 461 0.321210 CCCATGAGCGTGTGTTGGTA 60.321 55.000 0.00 0.00 0.00 3.25
461 462 1.600636 CCCATGAGCGTGTGTTGGT 60.601 57.895 0.00 0.00 0.00 3.67
462 463 0.888736 TTCCCATGAGCGTGTGTTGG 60.889 55.000 0.00 0.00 0.00 3.77
463 464 1.135603 CATTCCCATGAGCGTGTGTTG 60.136 52.381 0.00 0.00 31.07 3.33
464 465 1.167851 CATTCCCATGAGCGTGTGTT 58.832 50.000 0.00 0.00 31.07 3.32
465 466 0.677731 CCATTCCCATGAGCGTGTGT 60.678 55.000 0.00 0.00 31.07 3.72
466 467 0.677731 ACCATTCCCATGAGCGTGTG 60.678 55.000 0.00 0.00 31.07 3.82
467 468 0.038166 AACCATTCCCATGAGCGTGT 59.962 50.000 0.00 0.00 31.07 4.49
468 469 1.133025 GAAACCATTCCCATGAGCGTG 59.867 52.381 0.00 0.00 31.07 5.34
469 470 1.004745 AGAAACCATTCCCATGAGCGT 59.995 47.619 0.00 0.00 36.12 5.07
470 471 1.402968 CAGAAACCATTCCCATGAGCG 59.597 52.381 0.00 0.00 36.12 5.03
471 472 1.135721 GCAGAAACCATTCCCATGAGC 59.864 52.381 0.00 0.00 36.12 4.26
472 473 2.686915 GAGCAGAAACCATTCCCATGAG 59.313 50.000 0.00 0.00 36.12 2.90
473 474 2.621407 GGAGCAGAAACCATTCCCATGA 60.621 50.000 0.00 0.00 36.12 3.07
474 475 1.753073 GGAGCAGAAACCATTCCCATG 59.247 52.381 0.00 0.00 36.12 3.66
475 476 1.683011 CGGAGCAGAAACCATTCCCAT 60.683 52.381 0.00 0.00 36.12 4.00
476 477 0.322456 CGGAGCAGAAACCATTCCCA 60.322 55.000 0.00 0.00 36.12 4.37
477 478 1.032114 CCGGAGCAGAAACCATTCCC 61.032 60.000 0.00 0.00 36.12 3.97
478 479 0.322546 ACCGGAGCAGAAACCATTCC 60.323 55.000 9.46 0.00 36.12 3.01
479 480 0.804989 CACCGGAGCAGAAACCATTC 59.195 55.000 9.46 0.00 35.70 2.67
480 481 1.244019 GCACCGGAGCAGAAACCATT 61.244 55.000 19.70 0.00 0.00 3.16
481 482 1.675641 GCACCGGAGCAGAAACCAT 60.676 57.895 19.70 0.00 0.00 3.55
868 875 1.418637 TGAGCCGATATGGGGGTAAAC 59.581 52.381 5.85 0.00 38.63 2.01
879 886 2.291024 GGATAGAGGGACTGAGCCGATA 60.291 54.545 0.00 0.00 41.55 2.92
995 1002 1.879380 CACGACCTTGCTCCATTGAAA 59.121 47.619 0.00 0.00 0.00 2.69
1031 1038 0.320683 CTCAACCACATCTCCGTGCA 60.321 55.000 0.00 0.00 35.47 4.57
1074 1081 1.896660 GGCGGCAACTTCTTGGACA 60.897 57.895 3.07 0.00 0.00 4.02
1185 1192 2.842462 ACCAGGTCTGCCACGACA 60.842 61.111 0.00 0.00 35.63 4.35
1773 1784 6.820656 ACTACAGCAATCCTACAGATCAAAAG 59.179 38.462 0.00 0.00 32.47 2.27
2032 2044 1.466856 TGCATTGACTTCATCTGGCC 58.533 50.000 0.00 0.00 0.00 5.36
2202 2383 8.777865 TCATTGACCTAAAGTGATACTTTGAG 57.222 34.615 15.17 9.54 46.83 3.02
2214 2395 3.691609 GCACCTTCCTCATTGACCTAAAG 59.308 47.826 0.00 0.00 0.00 1.85
2576 2757 5.449041 GCACAAACATCACAACTTTCAGAGA 60.449 40.000 0.00 0.00 0.00 3.10
2701 2882 9.685828 GCACAAACAACTAAATAGTTCCATTTA 57.314 29.630 2.88 0.00 44.19 1.40
2702 2883 8.200792 TGCACAAACAACTAAATAGTTCCATTT 58.799 29.630 2.88 2.91 44.19 2.32
2703 2884 7.721402 TGCACAAACAACTAAATAGTTCCATT 58.279 30.769 2.88 0.00 44.19 3.16
2704 2885 7.283625 TGCACAAACAACTAAATAGTTCCAT 57.716 32.000 2.88 0.00 44.19 3.41
2705 2886 6.701145 TGCACAAACAACTAAATAGTTCCA 57.299 33.333 2.88 0.00 44.19 3.53
2706 2887 9.685828 TTAATGCACAAACAACTAAATAGTTCC 57.314 29.630 2.88 0.00 44.19 3.62
2711 2892 9.834628 GCTACTTAATGCACAAACAACTAAATA 57.165 29.630 0.00 0.00 0.00 1.40
2712 2893 8.576442 AGCTACTTAATGCACAAACAACTAAAT 58.424 29.630 0.00 0.00 0.00 1.40
2713 2894 7.860373 CAGCTACTTAATGCACAAACAACTAAA 59.140 33.333 0.00 0.00 0.00 1.85
2714 2895 7.012894 ACAGCTACTTAATGCACAAACAACTAA 59.987 33.333 0.00 0.00 0.00 2.24
2715 2896 6.485313 ACAGCTACTTAATGCACAAACAACTA 59.515 34.615 0.00 0.00 0.00 2.24
2716 2897 5.299279 ACAGCTACTTAATGCACAAACAACT 59.701 36.000 0.00 0.00 0.00 3.16
2717 2898 5.519722 ACAGCTACTTAATGCACAAACAAC 58.480 37.500 0.00 0.00 0.00 3.32
2718 2899 5.766150 ACAGCTACTTAATGCACAAACAA 57.234 34.783 0.00 0.00 0.00 2.83
2719 2900 6.869315 TTACAGCTACTTAATGCACAAACA 57.131 33.333 0.00 0.00 0.00 2.83
2720 2901 7.273381 CCATTTACAGCTACTTAATGCACAAAC 59.727 37.037 0.00 0.00 0.00 2.93
2721 2902 7.312154 CCATTTACAGCTACTTAATGCACAAA 58.688 34.615 0.00 0.00 0.00 2.83
2722 2903 6.127758 CCCATTTACAGCTACTTAATGCACAA 60.128 38.462 0.00 0.00 0.00 3.33
2723 2904 5.356751 CCCATTTACAGCTACTTAATGCACA 59.643 40.000 0.00 0.00 0.00 4.57
2724 2905 5.588648 TCCCATTTACAGCTACTTAATGCAC 59.411 40.000 0.00 0.00 0.00 4.57
2725 2906 5.750524 TCCCATTTACAGCTACTTAATGCA 58.249 37.500 0.00 0.00 0.00 3.96
2726 2907 6.884280 ATCCCATTTACAGCTACTTAATGC 57.116 37.500 0.00 0.00 0.00 3.56
2734 2915 9.860650 ACAAACATAATATCCCATTTACAGCTA 57.139 29.630 0.00 0.00 0.00 3.32
2735 2916 8.766994 ACAAACATAATATCCCATTTACAGCT 57.233 30.769 0.00 0.00 0.00 4.24
2736 2917 9.816354 AAACAAACATAATATCCCATTTACAGC 57.184 29.630 0.00 0.00 0.00 4.40
2752 2933 9.689976 CTGGAATGTAATGAACAAACAAACATA 57.310 29.630 0.00 0.00 42.70 2.29
2753 2934 8.203485 ACTGGAATGTAATGAACAAACAAACAT 58.797 29.630 0.00 0.00 42.70 2.71
2754 2935 7.551585 ACTGGAATGTAATGAACAAACAAACA 58.448 30.769 0.00 0.00 42.70 2.83
2755 2936 9.522804 TTACTGGAATGTAATGAACAAACAAAC 57.477 29.630 0.00 0.00 42.70 2.93
2758 2939 9.689976 CATTTACTGGAATGTAATGAACAAACA 57.310 29.630 0.00 0.00 42.70 2.83
2776 2957 9.027129 CAAACATCAGATAATTGCCATTTACTG 57.973 33.333 9.01 9.01 0.00 2.74
2777 2958 8.752187 ACAAACATCAGATAATTGCCATTTACT 58.248 29.630 7.09 0.00 0.00 2.24
2778 2959 8.810427 CACAAACATCAGATAATTGCCATTTAC 58.190 33.333 7.09 0.00 0.00 2.01
2779 2960 7.492020 GCACAAACATCAGATAATTGCCATTTA 59.508 33.333 7.09 0.00 0.00 1.40
2780 2961 6.314400 GCACAAACATCAGATAATTGCCATTT 59.686 34.615 7.09 0.00 0.00 2.32
2781 2962 5.813672 GCACAAACATCAGATAATTGCCATT 59.186 36.000 7.09 0.00 0.00 3.16
2782 2963 5.105269 TGCACAAACATCAGATAATTGCCAT 60.105 36.000 7.09 0.00 0.00 4.40
2783 2964 4.220163 TGCACAAACATCAGATAATTGCCA 59.780 37.500 7.09 3.62 0.00 4.92
2784 2965 4.746729 TGCACAAACATCAGATAATTGCC 58.253 39.130 7.09 1.70 0.00 4.52
2785 2966 6.897259 AATGCACAAACATCAGATAATTGC 57.103 33.333 0.00 0.00 0.00 3.56
2786 2967 9.577110 AAGTAATGCACAAACATCAGATAATTG 57.423 29.630 0.00 6.01 0.00 2.32
2789 2970 8.397906 GCTAAGTAATGCACAAACATCAGATAA 58.602 33.333 0.00 0.00 0.00 1.75
2790 2971 7.770433 AGCTAAGTAATGCACAAACATCAGATA 59.230 33.333 0.00 0.00 0.00 1.98
2791 2972 6.600822 AGCTAAGTAATGCACAAACATCAGAT 59.399 34.615 0.00 0.00 0.00 2.90
2792 2973 5.939883 AGCTAAGTAATGCACAAACATCAGA 59.060 36.000 0.00 0.00 0.00 3.27
2793 2974 6.025896 CAGCTAAGTAATGCACAAACATCAG 58.974 40.000 0.00 0.00 0.00 2.90
2794 2975 5.473162 ACAGCTAAGTAATGCACAAACATCA 59.527 36.000 0.00 0.00 0.00 3.07
2795 2976 5.942872 ACAGCTAAGTAATGCACAAACATC 58.057 37.500 0.00 0.00 0.00 3.06
2796 2977 5.964958 ACAGCTAAGTAATGCACAAACAT 57.035 34.783 0.00 0.00 0.00 2.71
2797 2978 6.869315 TTACAGCTAAGTAATGCACAAACA 57.131 33.333 0.00 0.00 0.00 2.83
2798 2979 7.273381 CCATTTACAGCTAAGTAATGCACAAAC 59.727 37.037 0.00 0.00 34.25 2.93
2799 2980 7.312154 CCATTTACAGCTAAGTAATGCACAAA 58.688 34.615 0.00 0.00 34.25 2.83
2800 2981 6.127758 CCCATTTACAGCTAAGTAATGCACAA 60.128 38.462 0.00 0.00 34.25 3.33
2801 2982 5.356751 CCCATTTACAGCTAAGTAATGCACA 59.643 40.000 0.00 0.00 34.25 4.57
2802 2983 5.588648 TCCCATTTACAGCTAAGTAATGCAC 59.411 40.000 0.00 0.00 34.25 4.57
2803 2984 5.750524 TCCCATTTACAGCTAAGTAATGCA 58.249 37.500 0.00 0.00 34.25 3.96
2804 2985 6.884280 ATCCCATTTACAGCTAAGTAATGC 57.116 37.500 0.00 0.00 34.25 3.56
2805 2986 9.507329 ACATATCCCATTTACAGCTAAGTAATG 57.493 33.333 0.00 1.48 34.25 1.90
2806 2987 9.507329 CACATATCCCATTTACAGCTAAGTAAT 57.493 33.333 0.00 0.00 34.25 1.89
2807 2988 8.491134 ACACATATCCCATTTACAGCTAAGTAA 58.509 33.333 0.00 0.00 32.46 2.24
2808 2989 7.931407 CACACATATCCCATTTACAGCTAAGTA 59.069 37.037 0.00 0.00 0.00 2.24
2809 2990 6.767902 CACACATATCCCATTTACAGCTAAGT 59.232 38.462 0.00 0.00 0.00 2.24
2810 2991 6.992123 TCACACATATCCCATTTACAGCTAAG 59.008 38.462 0.00 0.00 0.00 2.18
2811 2992 6.894682 TCACACATATCCCATTTACAGCTAA 58.105 36.000 0.00 0.00 0.00 3.09
2812 2993 6.493189 TCACACATATCCCATTTACAGCTA 57.507 37.500 0.00 0.00 0.00 3.32
2813 2994 5.372343 TCACACATATCCCATTTACAGCT 57.628 39.130 0.00 0.00 0.00 4.24
2814 2995 5.532406 ACATCACACATATCCCATTTACAGC 59.468 40.000 0.00 0.00 0.00 4.40
2935 3116 9.726438 ACATAATATCCCATTTACAGCTACTTC 57.274 33.333 0.00 0.00 0.00 3.01
2981 3162 9.027129 CAAACATCAGATAATTGCCATTTACTG 57.973 33.333 9.01 9.01 0.00 2.74
2982 3163 8.752187 ACAAACATCAGATAATTGCCATTTACT 58.248 29.630 7.09 0.00 0.00 2.24
2983 3164 8.810427 CACAAACATCAGATAATTGCCATTTAC 58.190 33.333 7.09 0.00 0.00 2.01
2984 3165 7.492020 GCACAAACATCAGATAATTGCCATTTA 59.508 33.333 7.09 0.00 0.00 1.40
2985 3166 6.314400 GCACAAACATCAGATAATTGCCATTT 59.686 34.615 7.09 0.00 0.00 2.32
2986 3167 5.813672 GCACAAACATCAGATAATTGCCATT 59.186 36.000 7.09 0.00 0.00 3.16
2988 3169 4.220163 TGCACAAACATCAGATAATTGCCA 59.780 37.500 7.09 3.62 0.00 4.92
2989 3170 4.746729 TGCACAAACATCAGATAATTGCC 58.253 39.130 7.09 1.70 0.00 4.52
2990 3171 6.897259 AATGCACAAACATCAGATAATTGC 57.103 33.333 0.00 0.00 0.00 3.56
2991 3172 9.577110 AAGTAATGCACAAACATCAGATAATTG 57.423 29.630 0.00 6.01 0.00 2.32
2994 3175 8.397906 GCTAAGTAATGCACAAACATCAGATAA 58.602 33.333 0.00 0.00 0.00 1.75
2995 3176 7.770433 AGCTAAGTAATGCACAAACATCAGATA 59.230 33.333 0.00 0.00 0.00 1.98
2996 3177 6.600822 AGCTAAGTAATGCACAAACATCAGAT 59.399 34.615 0.00 0.00 0.00 2.90
2998 3179 6.025896 CAGCTAAGTAATGCACAAACATCAG 58.974 40.000 0.00 0.00 0.00 2.90
3000 3181 5.942872 ACAGCTAAGTAATGCACAAACATC 58.057 37.500 0.00 0.00 0.00 3.06
3001 3182 5.964958 ACAGCTAAGTAATGCACAAACAT 57.035 34.783 0.00 0.00 0.00 2.71
3002 3183 6.869315 TTACAGCTAAGTAATGCACAAACA 57.131 33.333 0.00 0.00 0.00 2.83
3003 3184 8.638565 CAATTTACAGCTAAGTAATGCACAAAC 58.361 33.333 0.00 0.00 34.25 2.93
3543 3941 7.039882 ACTAACAATGATAAGTTCCACTACCG 58.960 38.462 0.00 0.00 0.00 4.02
3619 4017 2.099098 CACAAACACTTCCACCTTCCAC 59.901 50.000 0.00 0.00 0.00 4.02
3678 4076 6.382570 AGTCTCTGCCATAATTAAGAGTCTGT 59.617 38.462 10.35 0.00 37.88 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.