Multiple sequence alignment - TraesCS6B01G014700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G014700 chr6B 100.000 3316 0 0 1 3316 8903319 8900004 0.000000e+00 6124
1 TraesCS6B01G014700 chr6B 91.548 2662 156 33 1 2629 9168696 9171321 0.000000e+00 3605
2 TraesCS6B01G014700 chr6B 76.376 999 207 23 1229 2224 32819218 32820190 8.210000e-141 510
3 TraesCS6B01G014700 chr6B 94.715 246 12 1 3072 3316 41771304 41771549 6.710000e-102 381
4 TraesCS6B01G014700 chr6B 92.276 246 11 5 2389 2629 8872977 8872735 3.170000e-90 342
5 TraesCS6B01G014700 chr6B 89.960 249 22 3 3070 3316 240299017 240298770 5.340000e-83 318
6 TraesCS6B01G014700 chr6D 89.591 2565 199 32 510 3032 4838274 4840812 0.000000e+00 3195
7 TraesCS6B01G014700 chr6A 89.062 2569 191 45 200 2721 3912241 3914766 0.000000e+00 3105
8 TraesCS6B01G014700 chr6A 79.019 367 77 0 1792 2158 18931555 18931921 5.490000e-63 252
9 TraesCS6B01G014700 chr6A 86.577 149 14 2 2892 3034 3914765 3914913 3.420000e-35 159
10 TraesCS6B01G014700 chr6A 84.354 147 20 3 1225 1369 18931217 18931362 1.240000e-29 141
11 TraesCS6B01G014700 chr2B 92.000 250 17 3 3068 3316 68784431 68784184 6.810000e-92 348
12 TraesCS6B01G014700 chr5B 91.463 246 20 1 3072 3316 15624456 15624211 1.470000e-88 337
13 TraesCS6B01G014700 chr5B 90.650 246 22 1 3072 3316 708410038 708410283 3.190000e-85 326
14 TraesCS6B01G014700 chr3A 89.796 245 21 4 3072 3314 732798608 732798850 8.930000e-81 311
15 TraesCS6B01G014700 chr3B 88.446 251 27 2 3068 3316 358003495 358003745 5.380000e-78 302
16 TraesCS6B01G014700 chr3B 88.306 248 23 6 3072 3316 17053783 17053539 3.240000e-75 292
17 TraesCS6B01G014700 chr5A 88.980 245 23 4 3072 3314 618670910 618671152 1.930000e-77 300


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G014700 chr6B 8900004 8903319 3315 True 6124 6124 100.0000 1 3316 1 chr6B.!!$R2 3315
1 TraesCS6B01G014700 chr6B 9168696 9171321 2625 False 3605 3605 91.5480 1 2629 1 chr6B.!!$F1 2628
2 TraesCS6B01G014700 chr6B 32819218 32820190 972 False 510 510 76.3760 1229 2224 1 chr6B.!!$F2 995
3 TraesCS6B01G014700 chr6D 4838274 4840812 2538 False 3195 3195 89.5910 510 3032 1 chr6D.!!$F1 2522
4 TraesCS6B01G014700 chr6A 3912241 3914913 2672 False 1632 3105 87.8195 200 3034 2 chr6A.!!$F1 2834

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
725 745 0.027979 CTGGCGGAACATATTGCACG 59.972 55.0 0.0 0.0 0.0 5.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2320 2398 0.250252 TGATCACCTTGACGCAGCAA 60.25 50.0 0.0 0.0 0.0 3.91 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 0.034863 TACTTTTGGATGGCCGGTCC 60.035 55.000 17.80 17.80 36.79 4.46
47 48 3.792736 TGGCCGGTCCAGTATGCC 61.793 66.667 12.86 0.13 40.72 4.40
49 50 2.270850 GCCGGTCCAGTATGCCAA 59.729 61.111 1.90 0.00 31.97 4.52
54 55 1.875514 CGGTCCAGTATGCCAATCATG 59.124 52.381 0.00 0.00 36.63 3.07
72 73 8.139350 CCAATCATGCATGTCTAAACATATTGT 58.861 33.333 25.43 0.00 44.41 2.71
73 74 9.177304 CAATCATGCATGTCTAAACATATTGTC 57.823 33.333 25.43 0.00 44.41 3.18
74 75 7.862512 TCATGCATGTCTAAACATATTGTCA 57.137 32.000 25.43 0.00 44.41 3.58
79 80 7.121020 TGCATGTCTAAACATATTGTCACACAT 59.879 33.333 0.00 0.00 44.41 3.21
80 81 7.970061 GCATGTCTAAACATATTGTCACACATT 59.030 33.333 0.00 0.00 44.41 2.71
81 82 9.844790 CATGTCTAAACATATTGTCACACATTT 57.155 29.630 0.00 0.00 44.41 2.32
131 142 9.618410 GGATTTGAAATATTTTTGAATTACGCG 57.382 29.630 3.53 3.53 0.00 6.01
147 158 9.902196 TGAATTACGCGAGATAGAAACATAATA 57.098 29.630 15.93 0.00 0.00 0.98
192 203 9.622004 GAAATTGGATTTCATATGCACAGATAG 57.378 33.333 8.18 0.00 46.05 2.08
198 209 8.093307 GGATTTCATATGCACAGATAGAAGAGA 58.907 37.037 0.00 0.00 0.00 3.10
221 234 7.007116 AGAAAGGGAAGAATGAAATATAGGGC 58.993 38.462 0.00 0.00 0.00 5.19
230 243 7.816411 AGAATGAAATATAGGGCCTACACTTT 58.184 34.615 17.19 14.97 0.00 2.66
250 263 8.819974 ACACTTTTATGAAATTTGTCAAAGCAG 58.180 29.630 4.03 0.00 0.00 4.24
275 288 7.454694 AGTGCACCCTAAAAATCCTAGAAAAAT 59.545 33.333 14.63 0.00 0.00 1.82
277 290 8.655901 TGCACCCTAAAAATCCTAGAAAAATTT 58.344 29.630 0.00 0.00 0.00 1.82
304 320 7.521669 AGGAGCTGCATCTAAAATAGGTTTAT 58.478 34.615 8.35 0.00 31.22 1.40
305 321 8.660435 AGGAGCTGCATCTAAAATAGGTTTATA 58.340 33.333 8.35 0.00 31.22 0.98
307 323 8.329203 AGCTGCATCTAAAATAGGTTTATAGC 57.671 34.615 1.02 0.00 31.22 2.97
310 326 8.848474 TGCATCTAAAATAGGTTTATAGCCTC 57.152 34.615 1.73 0.00 37.54 4.70
322 338 8.785184 AGGTTTATAGCCTCTATGTTTCTAGT 57.215 34.615 0.00 0.00 0.00 2.57
342 358 3.764972 AGTGTACCTCTTAGAGTTGCTCC 59.235 47.826 8.55 0.00 0.00 4.70
347 363 5.606348 ACCTCTTAGAGTTGCTCCAATAG 57.394 43.478 8.55 0.00 0.00 1.73
348 364 5.273208 ACCTCTTAGAGTTGCTCCAATAGA 58.727 41.667 8.55 0.00 0.00 1.98
349 365 5.902431 ACCTCTTAGAGTTGCTCCAATAGAT 59.098 40.000 8.55 0.00 0.00 1.98
355 372 4.081420 AGAGTTGCTCCAATAGATTCGTGT 60.081 41.667 0.00 0.00 0.00 4.49
356 373 3.935203 AGTTGCTCCAATAGATTCGTGTG 59.065 43.478 0.00 0.00 0.00 3.82
357 374 2.279741 TGCTCCAATAGATTCGTGTGC 58.720 47.619 0.00 0.00 0.00 4.57
358 375 2.279741 GCTCCAATAGATTCGTGTGCA 58.720 47.619 0.00 0.00 0.00 4.57
359 376 2.874701 GCTCCAATAGATTCGTGTGCAT 59.125 45.455 0.00 0.00 0.00 3.96
360 377 3.303593 GCTCCAATAGATTCGTGTGCATG 60.304 47.826 0.00 0.00 0.00 4.06
361 378 2.613595 TCCAATAGATTCGTGTGCATGC 59.386 45.455 11.82 11.82 0.00 4.06
362 379 2.355444 CCAATAGATTCGTGTGCATGCA 59.645 45.455 18.46 18.46 0.00 3.96
363 380 3.004002 CCAATAGATTCGTGTGCATGCAT 59.996 43.478 25.64 6.24 0.00 3.96
364 381 4.213906 CCAATAGATTCGTGTGCATGCATA 59.786 41.667 25.64 19.63 0.00 3.14
365 382 5.106436 CCAATAGATTCGTGTGCATGCATAT 60.106 40.000 25.64 11.82 0.00 1.78
366 383 3.891056 AGATTCGTGTGCATGCATATG 57.109 42.857 25.64 25.75 37.36 1.78
367 384 2.551032 AGATTCGTGTGCATGCATATGG 59.449 45.455 29.35 20.10 34.79 2.74
368 385 1.023502 TTCGTGTGCATGCATATGGG 58.976 50.000 29.35 18.00 34.79 4.00
394 411 9.578576 GATATGGCCCAACACATATTGATATAT 57.421 33.333 0.00 0.00 39.63 0.86
410 429 8.913487 ATTGATATATCATTCTTCAGTGCACA 57.087 30.769 21.04 0.00 36.56 4.57
411 430 7.719778 TGATATATCATTCTTCAGTGCACAC 57.280 36.000 21.04 0.00 0.00 3.82
412 431 7.274447 TGATATATCATTCTTCAGTGCACACA 58.726 34.615 21.04 0.84 0.00 3.72
431 450 8.834465 TGCACACAAAATTAAAGCAAATATTGT 58.166 25.926 0.00 0.00 0.00 2.71
445 464 9.439500 AAGCAAATATTGTTGTGCTGATTTAAT 57.561 25.926 12.03 0.00 46.34 1.40
481 500 8.932945 ATAGAATATTGTACATATGCACCTCG 57.067 34.615 1.58 0.00 0.00 4.63
668 688 3.149005 ACTTTACTTTTGGATGGCCGA 57.851 42.857 0.00 0.00 36.79 5.54
672 692 1.247567 ACTTTTGGATGGCCGAACTG 58.752 50.000 0.00 0.00 37.29 3.16
673 693 1.247567 CTTTTGGATGGCCGAACTGT 58.752 50.000 0.00 0.00 37.29 3.55
681 701 4.406326 TGGATGGCCGAACTGTATAACTAA 59.594 41.667 0.00 0.00 36.79 2.24
682 702 4.748600 GGATGGCCGAACTGTATAACTAAC 59.251 45.833 0.00 0.00 0.00 2.34
683 703 5.452917 GGATGGCCGAACTGTATAACTAACT 60.453 44.000 0.00 0.00 0.00 2.24
684 704 6.239120 GGATGGCCGAACTGTATAACTAACTA 60.239 42.308 0.00 0.00 0.00 2.24
690 710 6.143438 CCGAACTGTATAACTAACTAATGCCG 59.857 42.308 0.00 0.00 0.00 5.69
725 745 0.027979 CTGGCGGAACATATTGCACG 59.972 55.000 0.00 0.00 0.00 5.34
726 746 0.675208 TGGCGGAACATATTGCACGT 60.675 50.000 0.00 0.00 0.00 4.49
732 752 4.033129 GCGGAACATATTGCACGTAAAGTA 59.967 41.667 0.00 0.00 0.00 2.24
733 753 5.486706 CGGAACATATTGCACGTAAAGTAC 58.513 41.667 0.00 0.00 0.00 2.73
734 754 5.062433 CGGAACATATTGCACGTAAAGTACA 59.938 40.000 0.00 0.00 0.00 2.90
858 878 0.995024 AGCCCTTCCACTAGCATGTT 59.005 50.000 0.00 0.00 0.00 2.71
869 889 9.113838 CTTCCACTAGCATGTTTCTTGTTATAT 57.886 33.333 0.00 0.00 0.00 0.86
994 1017 2.488204 TGATTGCGTTGATCAAGGGA 57.512 45.000 25.08 21.32 30.96 4.20
995 1018 2.358957 TGATTGCGTTGATCAAGGGAG 58.641 47.619 25.08 11.66 30.96 4.30
996 1019 1.672881 GATTGCGTTGATCAAGGGAGG 59.327 52.381 25.08 5.50 0.00 4.30
1027 1050 1.940613 GGAAACCTATGGTGACGATGC 59.059 52.381 0.00 0.00 35.34 3.91
1146 1169 4.443266 GCCACGCTCTTCCTCGCT 62.443 66.667 0.00 0.00 0.00 4.93
1308 1351 3.450904 ACTAGGCCTAAGATGACCACAA 58.549 45.455 14.85 0.00 0.00 3.33
2204 2279 0.617820 TCTACTTGGTCCTCTGGGGC 60.618 60.000 0.00 0.00 36.26 5.80
2208 2283 2.490270 CTTGGTCCTCTGGGGCAAGG 62.490 65.000 6.15 0.00 39.39 3.61
2213 2288 2.362120 CTCTGGGGCAAGGGCAAG 60.362 66.667 0.00 0.00 43.71 4.01
2249 2324 3.394836 AAGCTGCCTCCTCCGTCC 61.395 66.667 0.00 0.00 0.00 4.79
2320 2398 2.301009 TCATGCAGAGTGTGTGATGAGT 59.699 45.455 0.00 0.00 0.00 3.41
2455 2544 7.496591 GGTTACTGGAAATAATTCACGTGGATA 59.503 37.037 17.00 7.00 37.29 2.59
2582 2679 6.273071 GTGCAACTACAAAATGGAAGAAAGT 58.727 36.000 0.00 0.00 0.00 2.66
2586 2683 7.595130 GCAACTACAAAATGGAAGAAAGTAAGG 59.405 37.037 0.00 0.00 0.00 2.69
2589 2686 8.437575 ACTACAAAATGGAAGAAAGTAAGGAGA 58.562 33.333 0.00 0.00 0.00 3.71
2590 2687 9.454859 CTACAAAATGGAAGAAAGTAAGGAGAT 57.545 33.333 0.00 0.00 0.00 2.75
2659 2758 0.978907 GAAGGAAACCCTACCGACCA 59.021 55.000 0.00 0.00 32.65 4.02
2696 2795 3.756783 CCTCTCCCCTCCCTCGGT 61.757 72.222 0.00 0.00 0.00 4.69
2699 2798 2.283809 CTCCCCTCCCTCGGTGAT 59.716 66.667 0.00 0.00 0.00 3.06
2709 2808 4.758251 TCGGTGATGGCGTGCCTG 62.758 66.667 12.84 0.00 36.94 4.85
2721 2820 3.585020 TGCCTGCGTGTTGCTGTG 61.585 61.111 0.00 0.00 46.63 3.66
2724 2823 4.332637 CTGCGTGTTGCTGTGGGC 62.333 66.667 0.00 0.00 46.63 5.36
2757 2856 2.049248 GTGCGGGCAATGTTGTGG 60.049 61.111 0.00 0.00 0.00 4.17
2767 2866 1.541147 CAATGTTGTGGCTTGTCGGAT 59.459 47.619 0.00 0.00 0.00 4.18
2770 2869 1.621317 TGTTGTGGCTTGTCGGATCTA 59.379 47.619 0.00 0.00 0.00 1.98
2774 2873 2.700371 TGTGGCTTGTCGGATCTATCAT 59.300 45.455 0.00 0.00 0.00 2.45
2780 2879 1.000843 TGTCGGATCTATCATTGCGGG 59.999 52.381 0.00 0.00 0.00 6.13
2781 2880 1.000955 GTCGGATCTATCATTGCGGGT 59.999 52.381 0.00 0.00 0.00 5.28
2782 2881 1.000843 TCGGATCTATCATTGCGGGTG 59.999 52.381 0.00 0.00 0.00 4.61
2783 2882 1.813513 GGATCTATCATTGCGGGTGG 58.186 55.000 0.00 0.00 0.00 4.61
2791 2890 3.969250 ATTGCGGGTGGTAGTGGCG 62.969 63.158 0.00 0.00 0.00 5.69
2825 2924 3.965258 AGGCGGTCCAACATGGCA 61.965 61.111 0.00 0.00 37.47 4.92
2827 2926 2.350458 GGCGGTCCAACATGGCAAT 61.350 57.895 0.00 0.00 37.47 3.56
2828 2927 1.591183 GCGGTCCAACATGGCAATT 59.409 52.632 0.00 0.00 37.47 2.32
2834 2933 3.613494 TCCAACATGGCAATTTGGATG 57.387 42.857 22.68 4.97 43.13 3.51
2858 2957 4.392940 CATTGTGTCCTTCTGTTCCTCTT 58.607 43.478 0.00 0.00 0.00 2.85
2882 2981 4.441792 GTCCAGTTTGCCACTTTTGAATT 58.558 39.130 0.00 0.00 30.92 2.17
2896 2995 0.320334 TGAATTCGAGCGGAGTTGCA 60.320 50.000 0.04 0.00 37.31 4.08
2907 3006 1.294659 GGAGTTGCAGCTTGGTCTCG 61.295 60.000 3.97 0.00 0.00 4.04
2908 3007 0.601311 GAGTTGCAGCTTGGTCTCGT 60.601 55.000 3.97 0.00 0.00 4.18
2913 3012 0.246635 GCAGCTTGGTCTCGTAAGGA 59.753 55.000 0.00 0.00 38.47 3.36
2959 3058 2.060980 CCAGAGGTAGCGAGGCCTT 61.061 63.158 6.77 0.00 34.81 4.35
2964 3063 1.449778 GGTAGCGAGGCCTTTGTCC 60.450 63.158 6.77 2.74 0.00 4.02
2981 3080 5.975693 TTGTCCGAATGCCTTATTCTTTT 57.024 34.783 0.00 0.00 42.47 2.27
2982 3081 5.309323 TGTCCGAATGCCTTATTCTTTTG 57.691 39.130 0.00 0.00 42.47 2.44
2983 3082 4.764823 TGTCCGAATGCCTTATTCTTTTGT 59.235 37.500 0.00 0.00 42.47 2.83
2996 3101 0.321346 CTTTTGTGGGGGTCATTGCC 59.679 55.000 0.00 0.00 0.00 4.52
2998 3103 0.399091 TTTGTGGGGGTCATTGCCAA 60.399 50.000 0.00 0.00 0.00 4.52
3041 3146 2.791253 TCCTCCTTGGAGGCATTGT 58.209 52.632 26.58 0.00 40.56 2.71
3042 3147 1.075601 TCCTCCTTGGAGGCATTGTT 58.924 50.000 26.58 0.00 40.56 2.83
3043 3148 2.274542 TCCTCCTTGGAGGCATTGTTA 58.725 47.619 26.58 8.58 40.56 2.41
3044 3149 2.647299 TCCTCCTTGGAGGCATTGTTAA 59.353 45.455 26.58 7.90 40.56 2.01
3045 3150 3.269381 TCCTCCTTGGAGGCATTGTTAAT 59.731 43.478 26.58 0.00 40.56 1.40
3046 3151 3.382546 CCTCCTTGGAGGCATTGTTAATG 59.617 47.826 21.32 0.00 38.94 1.90
3047 3152 4.272489 CTCCTTGGAGGCATTGTTAATGA 58.728 43.478 8.74 0.00 40.64 2.57
3048 3153 4.272489 TCCTTGGAGGCATTGTTAATGAG 58.728 43.478 5.77 0.00 40.64 2.90
3049 3154 4.019174 CCTTGGAGGCATTGTTAATGAGT 58.981 43.478 5.77 0.00 41.46 3.41
3050 3155 5.045213 TCCTTGGAGGCATTGTTAATGAGTA 60.045 40.000 5.77 0.00 40.64 2.59
3051 3156 5.066505 CCTTGGAGGCATTGTTAATGAGTAC 59.933 44.000 5.77 0.00 41.46 2.73
3052 3157 5.435686 TGGAGGCATTGTTAATGAGTACT 57.564 39.130 0.00 0.00 41.46 2.73
3053 3158 5.815581 TGGAGGCATTGTTAATGAGTACTT 58.184 37.500 0.00 0.00 41.46 2.24
3054 3159 5.880332 TGGAGGCATTGTTAATGAGTACTTC 59.120 40.000 0.00 0.00 41.46 3.01
3055 3160 6.116126 GGAGGCATTGTTAATGAGTACTTCT 58.884 40.000 0.00 0.00 41.46 2.85
3056 3161 6.037610 GGAGGCATTGTTAATGAGTACTTCTG 59.962 42.308 0.00 0.00 41.46 3.02
3057 3162 5.355350 AGGCATTGTTAATGAGTACTTCTGC 59.645 40.000 0.00 0.00 41.46 4.26
3058 3163 5.123820 GGCATTGTTAATGAGTACTTCTGCA 59.876 40.000 0.00 0.00 41.46 4.41
3059 3164 6.183360 GGCATTGTTAATGAGTACTTCTGCAT 60.183 38.462 0.00 0.00 41.46 3.96
3060 3165 7.012327 GGCATTGTTAATGAGTACTTCTGCATA 59.988 37.037 0.00 0.00 41.46 3.14
3061 3166 8.562892 GCATTGTTAATGAGTACTTCTGCATAT 58.437 33.333 0.00 0.00 41.46 1.78
3070 3175 8.877808 TGAGTACTTCTGCATATTAGAACATG 57.122 34.615 0.00 0.00 31.35 3.21
3071 3176 7.439356 TGAGTACTTCTGCATATTAGAACATGC 59.561 37.037 0.00 0.00 46.21 4.06
3081 3186 8.818141 GCATATTAGAACATGCACTAGTAGAA 57.182 34.615 3.59 0.00 45.51 2.10
3082 3187 9.261180 GCATATTAGAACATGCACTAGTAGAAA 57.739 33.333 3.59 0.00 45.51 2.52
3086 3191 8.534333 TTAGAACATGCACTAGTAGAAAACTG 57.466 34.615 3.59 0.00 39.39 3.16
3087 3192 5.934625 AGAACATGCACTAGTAGAAAACTGG 59.065 40.000 3.59 0.00 42.21 4.00
3088 3193 4.579869 ACATGCACTAGTAGAAAACTGGG 58.420 43.478 3.59 0.00 40.86 4.45
3089 3194 3.053831 TGCACTAGTAGAAAACTGGGC 57.946 47.619 3.59 0.00 40.86 5.36
3090 3195 2.637872 TGCACTAGTAGAAAACTGGGCT 59.362 45.455 3.59 0.00 40.86 5.19
3091 3196 3.072476 TGCACTAGTAGAAAACTGGGCTT 59.928 43.478 3.59 0.00 40.86 4.35
3092 3197 4.072839 GCACTAGTAGAAAACTGGGCTTT 58.927 43.478 3.59 0.00 40.86 3.51
3093 3198 4.083271 GCACTAGTAGAAAACTGGGCTTTG 60.083 45.833 3.59 0.00 40.86 2.77
3094 3199 4.455877 CACTAGTAGAAAACTGGGCTTTGG 59.544 45.833 3.59 0.00 40.86 3.28
3095 3200 3.595190 AGTAGAAAACTGGGCTTTGGT 57.405 42.857 0.00 0.00 36.93 3.67
3096 3201 3.910989 AGTAGAAAACTGGGCTTTGGTT 58.089 40.909 0.00 0.00 36.93 3.67
3097 3202 3.889538 AGTAGAAAACTGGGCTTTGGTTC 59.110 43.478 0.00 0.00 36.93 3.62
3098 3203 2.745968 AGAAAACTGGGCTTTGGTTCA 58.254 42.857 0.00 0.00 0.00 3.18
3099 3204 2.695147 AGAAAACTGGGCTTTGGTTCAG 59.305 45.455 0.00 0.00 0.00 3.02
3100 3205 1.413118 AAACTGGGCTTTGGTTCAGG 58.587 50.000 0.00 0.00 0.00 3.86
3101 3206 1.115326 AACTGGGCTTTGGTTCAGGC 61.115 55.000 0.00 0.00 36.08 4.85
3103 3208 3.373565 GGGCTTTGGTTCAGGCCG 61.374 66.667 0.00 0.00 46.22 6.13
3104 3209 3.373565 GGCTTTGGTTCAGGCCGG 61.374 66.667 0.00 0.00 35.08 6.13
3105 3210 3.373565 GCTTTGGTTCAGGCCGGG 61.374 66.667 2.18 0.00 0.00 5.73
3106 3211 3.373565 CTTTGGTTCAGGCCGGGC 61.374 66.667 22.67 22.67 0.00 6.13
3121 3226 2.195956 GGCCAGCCCATTAGTCCC 59.804 66.667 0.00 0.00 0.00 4.46
3122 3227 2.203209 GCCAGCCCATTAGTCCCG 60.203 66.667 0.00 0.00 0.00 5.14
3123 3228 2.510906 CCAGCCCATTAGTCCCGG 59.489 66.667 0.00 0.00 0.00 5.73
3124 3229 2.375345 CCAGCCCATTAGTCCCGGT 61.375 63.158 0.00 0.00 0.00 5.28
3125 3230 1.607612 CAGCCCATTAGTCCCGGTT 59.392 57.895 0.00 0.00 0.00 4.44
3126 3231 0.463833 CAGCCCATTAGTCCCGGTTC 60.464 60.000 0.00 0.00 0.00 3.62
3127 3232 0.912487 AGCCCATTAGTCCCGGTTCA 60.912 55.000 0.00 0.00 0.00 3.18
3128 3233 0.463833 GCCCATTAGTCCCGGTTCAG 60.464 60.000 0.00 0.00 0.00 3.02
3129 3234 0.463833 CCCATTAGTCCCGGTTCAGC 60.464 60.000 0.00 0.00 0.00 4.26
3130 3235 0.463833 CCATTAGTCCCGGTTCAGCC 60.464 60.000 0.00 0.00 0.00 4.85
3131 3236 0.541863 CATTAGTCCCGGTTCAGCCT 59.458 55.000 0.00 0.00 34.25 4.58
3132 3237 1.760613 CATTAGTCCCGGTTCAGCCTA 59.239 52.381 0.00 0.00 34.25 3.93
3133 3238 1.481871 TTAGTCCCGGTTCAGCCTAG 58.518 55.000 0.00 0.00 34.25 3.02
3134 3239 0.627451 TAGTCCCGGTTCAGCCTAGA 59.373 55.000 0.00 0.00 34.25 2.43
3135 3240 0.252103 AGTCCCGGTTCAGCCTAGAA 60.252 55.000 0.00 0.00 34.25 2.10
3136 3241 0.108281 GTCCCGGTTCAGCCTAGAAC 60.108 60.000 0.00 5.90 45.50 3.01
3140 3245 4.934989 GTTCAGCCTAGAACCGGG 57.065 61.111 6.32 0.00 41.52 5.73
3141 3246 2.283824 GTTCAGCCTAGAACCGGGA 58.716 57.895 6.32 0.00 41.52 5.14
3142 3247 0.108281 GTTCAGCCTAGAACCGGGAC 60.108 60.000 6.32 0.00 41.52 4.46
3143 3248 1.262640 TTCAGCCTAGAACCGGGACC 61.263 60.000 6.32 0.00 0.00 4.46
3144 3249 2.365237 AGCCTAGAACCGGGACCC 60.365 66.667 6.32 0.00 0.00 4.46
3145 3250 2.686106 GCCTAGAACCGGGACCCA 60.686 66.667 12.15 0.00 0.00 4.51
3146 3251 2.070650 GCCTAGAACCGGGACCCAT 61.071 63.158 12.15 0.00 0.00 4.00
3147 3252 1.830145 CCTAGAACCGGGACCCATG 59.170 63.158 12.15 3.12 0.00 3.66
3148 3253 1.696097 CCTAGAACCGGGACCCATGG 61.696 65.000 12.15 4.14 0.00 3.66
3149 3254 1.691337 TAGAACCGGGACCCATGGG 60.691 63.158 30.23 30.23 42.03 4.00
3160 3265 2.846532 CCATGGGGGCATAGGTCC 59.153 66.667 2.85 0.00 38.40 4.46
3166 3271 2.509422 GGGCATAGGTCCCGGTTC 59.491 66.667 0.00 0.00 33.43 3.62
3167 3272 2.108362 GGCATAGGTCCCGGTTCG 59.892 66.667 0.00 0.00 0.00 3.95
3168 3273 2.728435 GGCATAGGTCCCGGTTCGT 61.728 63.158 0.00 0.00 0.00 3.85
3169 3274 1.520787 GCATAGGTCCCGGTTCGTG 60.521 63.158 0.00 0.00 0.00 4.35
3170 3275 1.952102 GCATAGGTCCCGGTTCGTGA 61.952 60.000 0.00 0.00 0.00 4.35
3171 3276 0.102481 CATAGGTCCCGGTTCGTGAG 59.898 60.000 0.00 0.00 0.00 3.51
3172 3277 0.324091 ATAGGTCCCGGTTCGTGAGT 60.324 55.000 0.00 0.00 0.00 3.41
3173 3278 0.962356 TAGGTCCCGGTTCGTGAGTC 60.962 60.000 0.00 0.00 0.00 3.36
3174 3279 2.260743 GTCCCGGTTCGTGAGTCC 59.739 66.667 0.00 0.00 0.00 3.85
3175 3280 2.203523 TCCCGGTTCGTGAGTCCA 60.204 61.111 0.00 0.00 0.00 4.02
3176 3281 2.261671 CCCGGTTCGTGAGTCCAG 59.738 66.667 0.00 0.00 0.00 3.86
3177 3282 2.432628 CCGGTTCGTGAGTCCAGC 60.433 66.667 0.00 0.00 0.00 4.85
3178 3283 2.805353 CGGTTCGTGAGTCCAGCG 60.805 66.667 0.00 0.00 0.00 5.18
3179 3284 2.432628 GGTTCGTGAGTCCAGCGG 60.433 66.667 0.00 0.00 0.00 5.52
3180 3285 2.432628 GTTCGTGAGTCCAGCGGG 60.433 66.667 0.00 0.00 0.00 6.13
3181 3286 4.373116 TTCGTGAGTCCAGCGGGC 62.373 66.667 0.00 0.00 0.00 6.13
3207 3312 2.440796 CCATCGCTGGGCATTGGT 60.441 61.111 0.00 0.00 39.04 3.67
3208 3313 2.484062 CCATCGCTGGGCATTGGTC 61.484 63.158 0.00 0.00 39.04 4.02
3209 3314 2.124151 ATCGCTGGGCATTGGTCC 60.124 61.111 0.00 0.00 40.08 4.46
3210 3315 3.721370 ATCGCTGGGCATTGGTCCC 62.721 63.158 0.00 0.00 44.17 4.46
3213 3318 4.047125 CTGGGCATTGGTCCCGGT 62.047 66.667 0.00 0.00 46.92 5.28
3214 3319 3.583882 CTGGGCATTGGTCCCGGTT 62.584 63.158 0.00 0.00 46.92 4.44
3215 3320 3.068064 GGGCATTGGTCCCGGTTG 61.068 66.667 0.00 0.00 33.43 3.77
3216 3321 2.034999 GGCATTGGTCCCGGTTGA 59.965 61.111 0.00 0.00 0.00 3.18
3217 3322 2.046285 GGCATTGGTCCCGGTTGAG 61.046 63.158 0.00 0.00 0.00 3.02
3218 3323 2.046285 GCATTGGTCCCGGTTGAGG 61.046 63.158 0.00 0.00 0.00 3.86
3219 3324 2.046285 CATTGGTCCCGGTTGAGGC 61.046 63.158 0.00 0.00 0.00 4.70
3220 3325 2.231380 ATTGGTCCCGGTTGAGGCT 61.231 57.895 0.00 0.00 0.00 4.58
3221 3326 2.198304 ATTGGTCCCGGTTGAGGCTC 62.198 60.000 7.79 7.79 0.00 4.70
3222 3327 4.452733 GGTCCCGGTTGAGGCTCG 62.453 72.222 10.42 0.00 0.00 5.03
3223 3328 3.379445 GTCCCGGTTGAGGCTCGA 61.379 66.667 10.42 4.91 0.00 4.04
3224 3329 2.602267 TCCCGGTTGAGGCTCGAA 60.602 61.111 5.89 0.51 0.00 3.71
3225 3330 2.434359 CCCGGTTGAGGCTCGAAC 60.434 66.667 9.92 9.92 0.00 3.95
3226 3331 2.434359 CCGGTTGAGGCTCGAACC 60.434 66.667 25.96 25.96 38.65 3.62
3227 3332 2.434359 CGGTTGAGGCTCGAACCC 60.434 66.667 27.86 17.55 38.79 4.11
3228 3333 2.434359 GGTTGAGGCTCGAACCCG 60.434 66.667 25.68 0.00 36.39 5.28
3229 3334 2.434359 GTTGAGGCTCGAACCCGG 60.434 66.667 5.89 0.00 36.24 5.73
3230 3335 2.602267 TTGAGGCTCGAACCCGGA 60.602 61.111 10.42 0.00 36.24 5.14
3231 3336 2.939261 TTGAGGCTCGAACCCGGAC 61.939 63.158 10.42 0.00 36.24 4.79
3232 3337 4.144703 GAGGCTCGAACCCGGACC 62.145 72.222 0.73 0.00 36.24 4.46
3234 3339 4.011517 GGCTCGAACCCGGACCAA 62.012 66.667 0.73 0.00 36.24 3.67
3235 3340 2.267961 GCTCGAACCCGGACCAAT 59.732 61.111 0.73 0.00 36.24 3.16
3236 3341 2.106683 GCTCGAACCCGGACCAATG 61.107 63.158 0.73 0.00 36.24 2.82
3237 3342 1.295423 CTCGAACCCGGACCAATGT 59.705 57.895 0.73 0.00 36.24 2.71
3238 3343 1.004320 TCGAACCCGGACCAATGTG 60.004 57.895 0.73 0.00 36.24 3.21
3239 3344 2.686816 CGAACCCGGACCAATGTGC 61.687 63.158 0.73 0.00 0.00 4.57
3240 3345 2.282887 AACCCGGACCAATGTGCC 60.283 61.111 0.73 0.00 0.00 5.01
3241 3346 2.764637 GAACCCGGACCAATGTGCCT 62.765 60.000 0.73 0.00 0.00 4.75
3242 3347 2.438434 CCCGGACCAATGTGCCTC 60.438 66.667 0.73 0.00 0.00 4.70
3243 3348 2.819595 CCGGACCAATGTGCCTCG 60.820 66.667 0.00 0.00 0.00 4.63
3244 3349 3.499737 CGGACCAATGTGCCTCGC 61.500 66.667 0.00 0.00 0.00 5.03
3245 3350 2.045926 GGACCAATGTGCCTCGCT 60.046 61.111 0.00 0.00 0.00 4.93
3246 3351 2.109126 GGACCAATGTGCCTCGCTC 61.109 63.158 0.00 0.00 0.00 5.03
3247 3352 2.045926 ACCAATGTGCCTCGCTCC 60.046 61.111 0.00 0.00 0.00 4.70
3248 3353 2.270205 CCAATGTGCCTCGCTCCT 59.730 61.111 0.00 0.00 0.00 3.69
3249 3354 2.110967 CCAATGTGCCTCGCTCCTG 61.111 63.158 0.00 0.00 0.00 3.86
3250 3355 2.110967 CAATGTGCCTCGCTCCTGG 61.111 63.158 0.00 0.00 0.00 4.45
3261 3366 3.341629 CTCCTGGCCCACCACCAT 61.342 66.667 0.00 0.00 42.67 3.55
3262 3367 2.863484 TCCTGGCCCACCACCATT 60.863 61.111 0.00 0.00 42.67 3.16
3263 3368 2.681064 CCTGGCCCACCACCATTG 60.681 66.667 0.00 0.00 42.67 2.82
3264 3369 2.440147 CTGGCCCACCACCATTGA 59.560 61.111 0.00 0.00 42.67 2.57
3265 3370 1.000739 CTGGCCCACCACCATTGAT 59.999 57.895 0.00 0.00 42.67 2.57
3266 3371 1.000233 TGGCCCACCACCATTGATC 60.000 57.895 0.00 0.00 42.67 2.92
3267 3372 1.758122 GGCCCACCACCATTGATCC 60.758 63.158 0.00 0.00 35.26 3.36
3268 3373 1.758122 GCCCACCACCATTGATCCC 60.758 63.158 0.00 0.00 0.00 3.85
3269 3374 1.453745 CCCACCACCATTGATCCCG 60.454 63.158 0.00 0.00 0.00 5.14
3270 3375 1.453745 CCACCACCATTGATCCCGG 60.454 63.158 0.00 0.00 0.00 5.73
3271 3376 1.302949 CACCACCATTGATCCCGGT 59.697 57.895 0.00 0.00 0.00 5.28
3272 3377 0.323360 CACCACCATTGATCCCGGTT 60.323 55.000 0.00 0.00 0.00 4.44
3273 3378 0.323360 ACCACCATTGATCCCGGTTG 60.323 55.000 0.00 0.00 0.00 3.77
3274 3379 0.034574 CCACCATTGATCCCGGTTGA 60.035 55.000 0.00 0.00 0.00 3.18
3275 3380 1.410083 CCACCATTGATCCCGGTTGAT 60.410 52.381 0.00 0.00 0.00 2.57
3276 3381 1.677576 CACCATTGATCCCGGTTGATG 59.322 52.381 0.00 0.00 0.00 3.07
3277 3382 1.321474 CCATTGATCCCGGTTGATGG 58.679 55.000 0.00 2.96 0.00 3.51
3278 3383 0.670162 CATTGATCCCGGTTGATGGC 59.330 55.000 0.00 0.00 0.00 4.40
3279 3384 0.552848 ATTGATCCCGGTTGATGGCT 59.447 50.000 0.00 0.00 0.00 4.75
3280 3385 0.331278 TTGATCCCGGTTGATGGCTT 59.669 50.000 0.00 0.00 0.00 4.35
3281 3386 0.394216 TGATCCCGGTTGATGGCTTG 60.394 55.000 0.00 0.00 0.00 4.01
3282 3387 0.107214 GATCCCGGTTGATGGCTTGA 60.107 55.000 0.00 0.00 0.00 3.02
3283 3388 0.331278 ATCCCGGTTGATGGCTTGAA 59.669 50.000 0.00 0.00 0.00 2.69
3284 3389 0.608035 TCCCGGTTGATGGCTTGAAC 60.608 55.000 0.00 0.00 0.00 3.18
3285 3390 1.595093 CCCGGTTGATGGCTTGAACC 61.595 60.000 11.01 11.01 36.55 3.62
3287 3392 1.883021 GGTTGATGGCTTGAACCGG 59.117 57.895 0.00 0.00 30.33 5.28
3288 3393 1.595093 GGTTGATGGCTTGAACCGGG 61.595 60.000 6.32 0.00 30.33 5.73
3289 3394 0.608035 GTTGATGGCTTGAACCGGGA 60.608 55.000 6.32 0.00 0.00 5.14
3290 3395 0.608035 TTGATGGCTTGAACCGGGAC 60.608 55.000 6.32 0.00 0.00 4.46
3291 3396 1.299976 GATGGCTTGAACCGGGACT 59.700 57.895 6.32 0.00 0.00 3.85
3292 3397 0.539986 GATGGCTTGAACCGGGACTA 59.460 55.000 6.32 0.00 0.00 2.59
3293 3398 0.988832 ATGGCTTGAACCGGGACTAA 59.011 50.000 6.32 0.00 0.00 2.24
3294 3399 0.766131 TGGCTTGAACCGGGACTAAA 59.234 50.000 6.32 0.00 0.00 1.85
3295 3400 1.271163 TGGCTTGAACCGGGACTAAAG 60.271 52.381 6.32 3.29 0.00 1.85
3296 3401 1.450025 GCTTGAACCGGGACTAAAGG 58.550 55.000 6.32 0.00 0.00 3.11
3297 3402 1.949079 GCTTGAACCGGGACTAAAGGG 60.949 57.143 6.32 0.00 0.00 3.95
3298 3403 1.350019 CTTGAACCGGGACTAAAGGGT 59.650 52.381 6.32 0.00 0.00 4.34
3299 3404 0.688487 TGAACCGGGACTAAAGGGTG 59.312 55.000 6.32 0.00 31.96 4.61
3300 3405 0.689055 GAACCGGGACTAAAGGGTGT 59.311 55.000 6.32 0.00 31.96 4.16
3301 3406 0.689055 AACCGGGACTAAAGGGTGTC 59.311 55.000 6.32 0.00 31.96 3.67
3312 3417 2.680066 AGGGTGTCCTTTAGTCCCG 58.320 57.895 0.00 0.00 41.56 5.14
3313 3418 0.908180 AGGGTGTCCTTTAGTCCCGG 60.908 60.000 0.00 0.00 41.56 5.73
3314 3419 1.196766 GGGTGTCCTTTAGTCCCGGT 61.197 60.000 0.00 0.00 0.00 5.28
3315 3420 0.689055 GGTGTCCTTTAGTCCCGGTT 59.311 55.000 0.00 0.00 0.00 4.44
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
16 17 1.408702 CCGGCCATCCAAAAGTAATGG 59.591 52.381 2.24 0.00 42.38 3.16
47 48 9.177304 GACAATATGTTTAGACATGCATGATTG 57.823 33.333 32.75 25.68 45.80 2.67
49 50 8.347771 GTGACAATATGTTTAGACATGCATGAT 58.652 33.333 32.75 21.47 45.80 2.45
54 55 6.841119 TGTGTGACAATATGTTTAGACATGC 58.159 36.000 9.08 0.00 45.80 4.06
121 132 8.812147 ATTATGTTTCTATCTCGCGTAATTCA 57.188 30.769 5.77 0.00 0.00 2.57
127 138 9.740239 TTAAACTATTATGTTTCTATCTCGCGT 57.260 29.630 5.77 0.00 40.23 6.01
175 186 9.322773 CTTTCTCTTCTATCTGTGCATATGAAA 57.677 33.333 6.97 0.00 0.00 2.69
176 187 7.930325 CCTTTCTCTTCTATCTGTGCATATGAA 59.070 37.037 6.97 0.00 0.00 2.57
187 198 7.986553 TCATTCTTCCCTTTCTCTTCTATCT 57.013 36.000 0.00 0.00 0.00 1.98
188 199 9.625747 ATTTCATTCTTCCCTTTCTCTTCTATC 57.374 33.333 0.00 0.00 0.00 2.08
198 209 6.077993 GGCCCTATATTTCATTCTTCCCTTT 58.922 40.000 0.00 0.00 0.00 3.11
230 243 6.200665 GTGCACTGCTTTGACAAATTTCATAA 59.799 34.615 10.32 0.00 0.00 1.90
250 263 6.584185 TTTTCTAGGATTTTTAGGGTGCAC 57.416 37.500 8.80 8.80 0.00 4.57
275 288 7.346471 ACCTATTTTAGATGCAGCTCCTAAAA 58.654 34.615 22.84 22.84 42.72 1.52
277 290 6.500589 ACCTATTTTAGATGCAGCTCCTAA 57.499 37.500 8.28 1.33 0.00 2.69
282 298 7.391833 GGCTATAAACCTATTTTAGATGCAGCT 59.608 37.037 10.44 10.44 33.04 4.24
297 313 8.643324 CACTAGAAACATAGAGGCTATAAACCT 58.357 37.037 0.00 0.00 41.41 3.50
304 320 6.670617 AGGTACACTAGAAACATAGAGGCTA 58.329 40.000 0.00 0.00 0.00 3.93
305 321 5.520751 AGGTACACTAGAAACATAGAGGCT 58.479 41.667 0.00 0.00 0.00 4.58
307 323 7.648039 AAGAGGTACACTAGAAACATAGAGG 57.352 40.000 0.00 0.00 0.00 3.69
310 326 9.398538 ACTCTAAGAGGTACACTAGAAACATAG 57.601 37.037 0.00 0.00 33.35 2.23
314 330 6.807720 GCAACTCTAAGAGGTACACTAGAAAC 59.192 42.308 0.00 0.00 33.35 2.78
318 334 5.066764 GGAGCAACTCTAAGAGGTACACTAG 59.933 48.000 0.00 0.00 33.35 2.57
322 338 3.774734 TGGAGCAACTCTAAGAGGTACA 58.225 45.455 0.00 0.00 33.35 2.90
326 342 5.860941 TCTATTGGAGCAACTCTAAGAGG 57.139 43.478 13.20 1.59 39.56 3.69
342 358 3.678915 TGCATGCACACGAATCTATTG 57.321 42.857 18.46 0.00 0.00 1.90
347 363 2.351060 CCCATATGCATGCACACGAATC 60.351 50.000 25.37 0.00 0.00 2.52
348 364 1.610038 CCCATATGCATGCACACGAAT 59.390 47.619 25.37 8.68 0.00 3.34
349 365 1.023502 CCCATATGCATGCACACGAA 58.976 50.000 25.37 6.75 0.00 3.85
355 372 2.380941 GCCATATCCCATATGCATGCA 58.619 47.619 25.04 25.04 40.96 3.96
356 373 1.684983 GGCCATATCCCATATGCATGC 59.315 52.381 11.82 11.82 40.96 4.06
357 374 2.313317 GGGCCATATCCCATATGCATG 58.687 52.381 10.16 0.00 45.82 4.06
358 375 2.761786 GGGCCATATCCCATATGCAT 57.238 50.000 4.39 3.79 45.82 3.96
366 383 2.969821 TATGTGTTGGGCCATATCCC 57.030 50.000 7.26 0.00 46.73 3.85
367 384 4.406456 TCAATATGTGTTGGGCCATATCC 58.594 43.478 7.26 0.00 34.09 2.59
368 385 7.886629 ATATCAATATGTGTTGGGCCATATC 57.113 36.000 7.26 1.60 34.09 1.63
394 411 4.979943 TTTTGTGTGCACTGAAGAATGA 57.020 36.364 19.41 0.00 0.00 2.57
410 429 9.662545 GCACAACAATATTTGCTTTAATTTTGT 57.337 25.926 3.14 0.00 39.63 2.83
411 430 9.881529 AGCACAACAATATTTGCTTTAATTTTG 57.118 25.926 6.55 0.00 42.74 2.44
412 431 9.881529 CAGCACAACAATATTTGCTTTAATTTT 57.118 25.926 9.20 0.00 42.74 1.82
471 490 6.463360 TGCAAATAATCTATCGAGGTGCATA 58.537 36.000 0.00 0.00 34.75 3.14
481 500 5.709164 ACTCATGCCCTGCAAATAATCTATC 59.291 40.000 0.00 0.00 43.62 2.08
652 672 2.224670 ACAGTTCGGCCATCCAAAAGTA 60.225 45.455 2.24 0.00 0.00 2.24
653 673 1.247567 CAGTTCGGCCATCCAAAAGT 58.752 50.000 2.24 0.00 0.00 2.66
654 674 1.247567 ACAGTTCGGCCATCCAAAAG 58.752 50.000 2.24 0.00 0.00 2.27
655 675 2.570415 TACAGTTCGGCCATCCAAAA 57.430 45.000 2.24 0.00 0.00 2.44
656 676 2.799126 ATACAGTTCGGCCATCCAAA 57.201 45.000 2.24 0.00 0.00 3.28
668 688 6.579865 AGCGGCATTAGTTAGTTATACAGTT 58.420 36.000 1.45 0.00 0.00 3.16
672 692 6.035758 GGCATAGCGGCATTAGTTAGTTATAC 59.964 42.308 1.45 0.00 40.76 1.47
673 693 6.103997 GGCATAGCGGCATTAGTTAGTTATA 58.896 40.000 1.45 0.00 40.76 0.98
711 731 6.411630 TGTACTTTACGTGCAATATGTTCC 57.588 37.500 0.00 0.00 35.20 3.62
725 745 9.893305 ACATCACTATTTGCTTTTGTACTTTAC 57.107 29.630 0.00 0.00 0.00 2.01
732 752 6.207417 AGCAGTACATCACTATTTGCTTTTGT 59.793 34.615 0.00 0.00 34.98 2.83
733 753 6.525628 CAGCAGTACATCACTATTTGCTTTTG 59.474 38.462 0.00 0.00 34.98 2.44
734 754 6.430925 TCAGCAGTACATCACTATTTGCTTTT 59.569 34.615 0.00 0.00 34.98 2.27
781 801 7.629157 TCTTTGGAGATCCATGTGTACAATAA 58.371 34.615 1.61 0.00 46.97 1.40
869 889 9.537852 TTAACTAACAGAACTAGGTCCTTGATA 57.462 33.333 3.53 0.00 0.00 2.15
994 1017 5.399497 CCATAGGTTTCCAATCCATTCTCCT 60.399 44.000 0.00 0.00 0.00 3.69
995 1018 4.829492 CCATAGGTTTCCAATCCATTCTCC 59.171 45.833 0.00 0.00 0.00 3.71
996 1019 5.300286 CACCATAGGTTTCCAATCCATTCTC 59.700 44.000 0.00 0.00 31.02 2.87
1068 1091 4.007659 TCCCTTCGTTAAAAGCCATCTTC 58.992 43.478 0.00 0.00 0.00 2.87
1146 1169 2.097036 TCTTTGAAGTAGGCGATCGGA 58.903 47.619 18.30 0.00 0.00 4.55
1218 1259 4.249661 ACAACAGAAATTGGCGTGTTTTT 58.750 34.783 0.00 0.00 33.63 1.94
1223 1264 3.044986 CTCAACAACAGAAATTGGCGTG 58.955 45.455 0.00 0.00 33.63 5.34
1308 1351 5.946972 TCAAGAAGAGGTAGACGAAGATCTT 59.053 40.000 7.95 7.95 0.00 2.40
1374 1417 6.699575 ACAATTAAGCTCTGTCAACACTTT 57.300 33.333 0.00 0.00 0.00 2.66
2204 2279 2.437359 CTCGCCTCCTTGCCCTTG 60.437 66.667 0.00 0.00 0.00 3.61
2213 2288 3.435186 GGTTTGCTGCTCGCCTCC 61.435 66.667 0.00 0.00 38.05 4.30
2249 2324 1.135315 CAACGCGAGCTTGGAATGG 59.865 57.895 15.93 0.00 0.00 3.16
2320 2398 0.250252 TGATCACCTTGACGCAGCAA 60.250 50.000 0.00 0.00 0.00 3.91
2434 2523 7.279981 TGACTTATCCACGTGAATTATTTCCAG 59.720 37.037 19.30 2.43 0.00 3.86
2455 2544 7.647715 CGTTTGAACAATAATCCACTTTGACTT 59.352 33.333 0.00 0.00 0.00 3.01
2538 2635 8.300286 GTTGCACTATATAGTCATCAAGAGCTA 58.700 37.037 12.62 5.25 33.46 3.32
2548 2645 9.325198 CCATTTTGTAGTTGCACTATATAGTCA 57.675 33.333 12.62 10.79 32.65 3.41
2553 2650 9.461312 TTCTTCCATTTTGTAGTTGCACTATAT 57.539 29.630 0.00 0.00 32.65 0.86
2571 2668 9.807921 TTTGTTTATCTCCTTACTTTCTTCCAT 57.192 29.630 0.00 0.00 0.00 3.41
2577 2674 8.392372 ACCACTTTGTTTATCTCCTTACTTTC 57.608 34.615 0.00 0.00 0.00 2.62
2582 2679 7.686434 AGCTAACCACTTTGTTTATCTCCTTA 58.314 34.615 0.00 0.00 0.00 2.69
2586 2683 6.314152 GGAGAGCTAACCACTTTGTTTATCTC 59.686 42.308 4.08 0.00 33.57 2.75
2589 2686 5.254115 GGGAGAGCTAACCACTTTGTTTAT 58.746 41.667 10.24 0.00 0.00 1.40
2590 2687 4.648651 GGGAGAGCTAACCACTTTGTTTA 58.351 43.478 10.24 0.00 0.00 2.01
2591 2688 3.487372 GGGAGAGCTAACCACTTTGTTT 58.513 45.455 10.24 0.00 0.00 2.83
2593 2690 1.002087 CGGGAGAGCTAACCACTTTGT 59.998 52.381 10.24 0.00 0.00 2.83
2594 2691 1.726853 CGGGAGAGCTAACCACTTTG 58.273 55.000 10.24 0.00 0.00 2.77
2659 2758 4.265056 GAAGTGGGTGGTGGCGGT 62.265 66.667 0.00 0.00 0.00 5.68
2674 2773 3.707189 GGGAGGGGAGAGGGGGAA 61.707 72.222 0.00 0.00 0.00 3.97
2724 2823 3.991051 ACACCTCTGCACGACCCG 61.991 66.667 0.00 0.00 0.00 5.28
2734 2833 2.360350 CATTGCCCGCACACCTCT 60.360 61.111 0.00 0.00 0.00 3.69
2757 2856 2.156504 CGCAATGATAGATCCGACAAGC 59.843 50.000 0.00 0.00 0.00 4.01
2767 2866 2.102420 CACTACCACCCGCAATGATAGA 59.898 50.000 0.00 0.00 0.00 1.98
2770 2869 0.107214 CCACTACCACCCGCAATGAT 60.107 55.000 0.00 0.00 0.00 2.45
2774 2873 4.690719 CGCCACTACCACCCGCAA 62.691 66.667 0.00 0.00 0.00 4.85
2793 2892 2.819595 CCTGGGTCGATGTTGGCG 60.820 66.667 0.00 0.00 0.00 5.69
2825 2924 3.175594 AGGACACAATGGCATCCAAATT 58.824 40.909 0.00 0.00 36.95 1.82
2827 2926 2.307496 AGGACACAATGGCATCCAAA 57.693 45.000 0.00 0.00 36.95 3.28
2828 2927 2.170166 GAAGGACACAATGGCATCCAA 58.830 47.619 0.00 0.00 36.95 3.53
2833 2932 2.229792 GAACAGAAGGACACAATGGCA 58.770 47.619 0.00 0.00 0.00 4.92
2834 2933 1.541588 GGAACAGAAGGACACAATGGC 59.458 52.381 0.00 0.00 0.00 4.40
2858 2957 1.480137 CAAAAGTGGCAAACTGGACCA 59.520 47.619 0.00 0.00 39.81 4.02
2882 2981 3.226429 AAGCTGCAACTCCGCTCGA 62.226 57.895 1.02 0.00 32.70 4.04
2896 2995 1.405821 CGATCCTTACGAGACCAAGCT 59.594 52.381 0.00 0.00 0.00 3.74
2907 3006 2.030096 GCTAGGCCACTACGATCCTTAC 60.030 54.545 5.01 0.00 0.00 2.34
2908 3007 2.236766 GCTAGGCCACTACGATCCTTA 58.763 52.381 5.01 0.00 0.00 2.69
2934 3033 3.461773 GCTACCTCTGGCCTGCGA 61.462 66.667 3.32 0.00 0.00 5.10
2936 3035 3.438017 CTCGCTACCTCTGGCCTGC 62.438 68.421 3.32 0.00 0.00 4.85
2937 3036 2.790791 CCTCGCTACCTCTGGCCTG 61.791 68.421 3.32 2.92 0.00 4.85
2941 3040 1.617947 AAAGGCCTCGCTACCTCTGG 61.618 60.000 5.23 0.00 34.31 3.86
2959 3058 5.242838 ACAAAAGAATAAGGCATTCGGACAA 59.757 36.000 0.00 0.00 46.57 3.18
2964 3063 4.423732 CCCACAAAAGAATAAGGCATTCG 58.576 43.478 0.00 0.00 46.57 3.34
2981 3080 0.903924 CATTGGCAATGACCCCCACA 60.904 55.000 31.50 0.00 41.46 4.17
2982 3081 0.614415 TCATTGGCAATGACCCCCAC 60.614 55.000 33.06 0.00 42.69 4.61
2983 3082 1.779653 TCATTGGCAATGACCCCCA 59.220 52.632 33.06 14.72 42.69 4.96
2996 3101 2.889045 CCCATAGGCTCCAACATCATTG 59.111 50.000 0.00 0.00 0.00 2.82
2998 3103 2.138542 ACCCATAGGCTCCAACATCAT 58.861 47.619 0.00 0.00 36.11 2.45
3034 3139 5.123820 TGCAGAAGTACTCATTAACAATGCC 59.876 40.000 0.00 0.00 38.77 4.40
3035 3140 6.182039 TGCAGAAGTACTCATTAACAATGC 57.818 37.500 0.00 0.00 38.77 3.56
3044 3149 9.486497 CATGTTCTAATATGCAGAAGTACTCAT 57.514 33.333 0.00 0.00 32.81 2.90
3045 3150 8.877808 CATGTTCTAATATGCAGAAGTACTCA 57.122 34.615 0.00 0.00 32.81 3.41
3060 3165 9.155975 CAGTTTTCTACTAGTGCATGTTCTAAT 57.844 33.333 5.39 0.00 34.56 1.73
3061 3166 7.602644 CCAGTTTTCTACTAGTGCATGTTCTAA 59.397 37.037 5.39 0.00 34.56 2.10
3062 3167 7.097192 CCAGTTTTCTACTAGTGCATGTTCTA 58.903 38.462 5.39 0.00 34.56 2.10
3063 3168 5.934625 CCAGTTTTCTACTAGTGCATGTTCT 59.065 40.000 5.39 0.00 34.56 3.01
3064 3169 5.122396 CCCAGTTTTCTACTAGTGCATGTTC 59.878 44.000 5.39 0.00 34.56 3.18
3065 3170 5.003804 CCCAGTTTTCTACTAGTGCATGTT 58.996 41.667 5.39 0.00 34.56 2.71
3066 3171 4.579869 CCCAGTTTTCTACTAGTGCATGT 58.420 43.478 5.39 0.00 34.56 3.21
3067 3172 3.375299 GCCCAGTTTTCTACTAGTGCATG 59.625 47.826 5.39 0.00 34.56 4.06
3068 3173 3.264450 AGCCCAGTTTTCTACTAGTGCAT 59.736 43.478 5.39 0.00 34.56 3.96
3069 3174 2.637872 AGCCCAGTTTTCTACTAGTGCA 59.362 45.455 5.39 0.00 34.56 4.57
3070 3175 3.336138 AGCCCAGTTTTCTACTAGTGC 57.664 47.619 5.39 0.00 34.56 4.40
3071 3176 4.455877 CCAAAGCCCAGTTTTCTACTAGTG 59.544 45.833 5.39 0.00 34.56 2.74
3072 3177 4.104261 ACCAAAGCCCAGTTTTCTACTAGT 59.896 41.667 0.00 0.00 34.56 2.57
3073 3178 4.652822 ACCAAAGCCCAGTTTTCTACTAG 58.347 43.478 0.00 0.00 34.56 2.57
3074 3179 4.717279 ACCAAAGCCCAGTTTTCTACTA 57.283 40.909 0.00 0.00 34.56 1.82
3075 3180 3.595190 ACCAAAGCCCAGTTTTCTACT 57.405 42.857 0.00 0.00 37.68 2.57
3076 3181 3.634910 TGAACCAAAGCCCAGTTTTCTAC 59.365 43.478 0.00 0.00 0.00 2.59
3077 3182 3.888930 CTGAACCAAAGCCCAGTTTTCTA 59.111 43.478 0.00 0.00 0.00 2.10
3078 3183 2.695147 CTGAACCAAAGCCCAGTTTTCT 59.305 45.455 0.00 0.00 0.00 2.52
3079 3184 2.224042 CCTGAACCAAAGCCCAGTTTTC 60.224 50.000 0.00 0.00 0.00 2.29
3080 3185 1.762370 CCTGAACCAAAGCCCAGTTTT 59.238 47.619 0.00 0.00 0.00 2.43
3081 3186 1.413118 CCTGAACCAAAGCCCAGTTT 58.587 50.000 0.00 0.00 0.00 2.66
3082 3187 1.115326 GCCTGAACCAAAGCCCAGTT 61.115 55.000 0.00 0.00 0.00 3.16
3083 3188 1.531602 GCCTGAACCAAAGCCCAGT 60.532 57.895 0.00 0.00 0.00 4.00
3084 3189 2.278330 GGCCTGAACCAAAGCCCAG 61.278 63.158 0.00 0.00 39.60 4.45
3085 3190 2.203625 GGCCTGAACCAAAGCCCA 60.204 61.111 0.00 0.00 39.60 5.36
3086 3191 3.373565 CGGCCTGAACCAAAGCCC 61.374 66.667 0.00 0.00 42.66 5.19
3087 3192 3.373565 CCGGCCTGAACCAAAGCC 61.374 66.667 0.00 0.00 42.18 4.35
3088 3193 3.373565 CCCGGCCTGAACCAAAGC 61.374 66.667 0.00 0.00 0.00 3.51
3089 3194 3.373565 GCCCGGCCTGAACCAAAG 61.374 66.667 0.00 0.00 0.00 2.77
3090 3195 4.986708 GGCCCGGCCTGAACCAAA 62.987 66.667 22.31 0.00 46.69 3.28
3104 3209 2.195956 GGGACTAATGGGCTGGCC 59.804 66.667 14.23 14.23 0.00 5.36
3105 3210 2.203209 CGGGACTAATGGGCTGGC 60.203 66.667 0.00 0.00 0.00 4.85
3106 3211 1.921869 AACCGGGACTAATGGGCTGG 61.922 60.000 6.32 0.00 0.00 4.85
3107 3212 0.463833 GAACCGGGACTAATGGGCTG 60.464 60.000 6.32 0.00 0.00 4.85
3108 3213 0.912487 TGAACCGGGACTAATGGGCT 60.912 55.000 6.32 0.00 0.00 5.19
3109 3214 0.463833 CTGAACCGGGACTAATGGGC 60.464 60.000 6.32 0.00 0.00 5.36
3110 3215 0.463833 GCTGAACCGGGACTAATGGG 60.464 60.000 6.32 0.00 0.00 4.00
3111 3216 0.463833 GGCTGAACCGGGACTAATGG 60.464 60.000 6.32 0.00 0.00 3.16
3112 3217 0.541863 AGGCTGAACCGGGACTAATG 59.458 55.000 6.32 0.00 46.52 1.90
3113 3218 2.040178 CTAGGCTGAACCGGGACTAAT 58.960 52.381 6.32 0.00 46.52 1.73
3114 3219 1.006281 TCTAGGCTGAACCGGGACTAA 59.994 52.381 6.32 0.00 46.52 2.24
3115 3220 0.627451 TCTAGGCTGAACCGGGACTA 59.373 55.000 6.32 0.00 46.52 2.59
3116 3221 0.252103 TTCTAGGCTGAACCGGGACT 60.252 55.000 6.32 0.00 46.52 3.85
3117 3222 0.108281 GTTCTAGGCTGAACCGGGAC 60.108 60.000 6.32 0.00 46.52 4.46
3118 3223 2.283824 GTTCTAGGCTGAACCGGGA 58.716 57.895 6.32 0.00 46.52 5.14
3119 3224 4.934989 GTTCTAGGCTGAACCGGG 57.065 61.111 6.32 0.00 46.52 5.73
3123 3228 0.108281 GTCCCGGTTCTAGGCTGAAC 60.108 60.000 16.52 16.52 43.88 3.18
3124 3229 1.262640 GGTCCCGGTTCTAGGCTGAA 61.263 60.000 0.00 0.00 0.00 3.02
3125 3230 1.684734 GGTCCCGGTTCTAGGCTGA 60.685 63.158 0.00 0.00 0.00 4.26
3126 3231 2.732619 GGGTCCCGGTTCTAGGCTG 61.733 68.421 0.00 0.00 0.00 4.85
3127 3232 2.365237 GGGTCCCGGTTCTAGGCT 60.365 66.667 0.00 0.00 0.00 4.58
3128 3233 2.070650 ATGGGTCCCGGTTCTAGGC 61.071 63.158 2.65 0.00 0.00 3.93
3129 3234 1.696097 CCATGGGTCCCGGTTCTAGG 61.696 65.000 2.85 0.00 0.00 3.02
3130 3235 1.696097 CCCATGGGTCCCGGTTCTAG 61.696 65.000 23.93 0.00 0.00 2.43
3131 3236 1.691337 CCCATGGGTCCCGGTTCTA 60.691 63.158 23.93 0.00 0.00 2.10
3132 3237 3.015145 CCCATGGGTCCCGGTTCT 61.015 66.667 23.93 0.00 0.00 3.01
3133 3238 4.123545 CCCCATGGGTCCCGGTTC 62.124 72.222 29.33 0.00 38.25 3.62
3143 3248 2.845345 GGGACCTATGCCCCCATGG 61.845 68.421 4.14 4.14 39.81 3.66
3144 3249 2.846532 GGGACCTATGCCCCCATG 59.153 66.667 0.00 0.00 39.81 3.66
3145 3250 2.854032 CGGGACCTATGCCCCCAT 60.854 66.667 0.00 0.00 42.92 4.00
3148 3253 3.094498 AACCGGGACCTATGCCCC 61.094 66.667 6.32 0.00 42.92 5.80
3149 3254 2.509422 GAACCGGGACCTATGCCC 59.491 66.667 6.32 0.00 42.41 5.36
3150 3255 2.108362 CGAACCGGGACCTATGCC 59.892 66.667 6.32 0.00 0.00 4.40
3151 3256 1.520787 CACGAACCGGGACCTATGC 60.521 63.158 6.32 0.00 28.17 3.14
3152 3257 0.102481 CTCACGAACCGGGACCTATG 59.898 60.000 6.32 0.00 32.99 2.23
3153 3258 0.324091 ACTCACGAACCGGGACCTAT 60.324 55.000 6.32 0.00 32.99 2.57
3154 3259 0.962356 GACTCACGAACCGGGACCTA 60.962 60.000 6.32 0.00 32.99 3.08
3155 3260 2.203596 ACTCACGAACCGGGACCT 60.204 61.111 6.32 0.00 32.99 3.85
3156 3261 2.260743 GACTCACGAACCGGGACC 59.739 66.667 6.32 0.00 32.99 4.46
3157 3262 2.260743 GGACTCACGAACCGGGAC 59.739 66.667 6.32 0.00 32.99 4.46
3158 3263 2.203523 TGGACTCACGAACCGGGA 60.204 61.111 6.32 0.00 36.75 5.14
3159 3264 2.261671 CTGGACTCACGAACCGGG 59.738 66.667 6.32 0.00 0.00 5.73
3160 3265 2.432628 GCTGGACTCACGAACCGG 60.433 66.667 0.00 0.00 0.00 5.28
3161 3266 2.805353 CGCTGGACTCACGAACCG 60.805 66.667 0.00 0.00 0.00 4.44
3162 3267 2.432628 CCGCTGGACTCACGAACC 60.433 66.667 0.00 0.00 0.00 3.62
3163 3268 2.432628 CCCGCTGGACTCACGAAC 60.433 66.667 0.00 0.00 0.00 3.95
3164 3269 4.373116 GCCCGCTGGACTCACGAA 62.373 66.667 0.00 0.00 0.00 3.85
3190 3295 2.440796 ACCAATGCCCAGCGATGG 60.441 61.111 14.18 14.18 40.90 3.51
3191 3296 2.484062 GGACCAATGCCCAGCGATG 61.484 63.158 0.00 0.00 0.00 3.84
3192 3297 2.124151 GGACCAATGCCCAGCGAT 60.124 61.111 0.00 0.00 0.00 4.58
3193 3298 4.424711 GGGACCAATGCCCAGCGA 62.425 66.667 0.00 0.00 45.31 4.93
3196 3301 3.583882 AACCGGGACCAATGCCCAG 62.584 63.158 6.32 0.00 46.36 4.45
3197 3302 3.585428 AACCGGGACCAATGCCCA 61.585 61.111 6.32 0.00 46.36 5.36
3198 3303 3.068064 CAACCGGGACCAATGCCC 61.068 66.667 6.32 0.00 42.41 5.36
3199 3304 2.034999 TCAACCGGGACCAATGCC 59.965 61.111 6.32 0.00 0.00 4.40
3200 3305 2.046285 CCTCAACCGGGACCAATGC 61.046 63.158 6.32 0.00 0.00 3.56
3201 3306 2.046285 GCCTCAACCGGGACCAATG 61.046 63.158 6.32 0.00 0.00 2.82
3202 3307 2.198304 GAGCCTCAACCGGGACCAAT 62.198 60.000 6.32 0.00 0.00 3.16
3203 3308 2.852075 AGCCTCAACCGGGACCAA 60.852 61.111 6.32 0.00 0.00 3.67
3204 3309 3.319198 GAGCCTCAACCGGGACCA 61.319 66.667 6.32 0.00 0.00 4.02
3205 3310 4.452733 CGAGCCTCAACCGGGACC 62.453 72.222 6.32 0.00 0.00 4.46
3206 3311 2.939261 TTCGAGCCTCAACCGGGAC 61.939 63.158 6.32 0.00 0.00 4.46
3207 3312 2.602267 TTCGAGCCTCAACCGGGA 60.602 61.111 6.32 0.00 0.00 5.14
3208 3313 2.434359 GTTCGAGCCTCAACCGGG 60.434 66.667 6.32 0.00 0.00 5.73
3209 3314 2.434359 GGTTCGAGCCTCAACCGG 60.434 66.667 11.59 0.00 33.01 5.28
3210 3315 2.434359 GGGTTCGAGCCTCAACCG 60.434 66.667 18.44 0.00 42.79 4.44
3211 3316 2.434359 CGGGTTCGAGCCTCAACC 60.434 66.667 18.44 14.16 41.35 3.77
3212 3317 2.434359 CCGGGTTCGAGCCTCAAC 60.434 66.667 18.44 0.06 39.00 3.18
3213 3318 2.602267 TCCGGGTTCGAGCCTCAA 60.602 61.111 18.44 0.71 39.00 3.02
3214 3319 3.379445 GTCCGGGTTCGAGCCTCA 61.379 66.667 18.44 0.00 39.00 3.86
3215 3320 4.144703 GGTCCGGGTTCGAGCCTC 62.145 72.222 18.44 7.43 39.00 4.70
3217 3322 3.325201 ATTGGTCCGGGTTCGAGCC 62.325 63.158 10.28 10.28 39.00 4.70
3218 3323 2.106683 CATTGGTCCGGGTTCGAGC 61.107 63.158 0.00 0.00 39.00 5.03
3219 3324 1.019278 CACATTGGTCCGGGTTCGAG 61.019 60.000 0.00 0.00 39.00 4.04
3220 3325 1.004320 CACATTGGTCCGGGTTCGA 60.004 57.895 0.00 0.00 39.00 3.71
3221 3326 2.686816 GCACATTGGTCCGGGTTCG 61.687 63.158 0.00 0.00 0.00 3.95
3222 3327 2.340328 GGCACATTGGTCCGGGTTC 61.340 63.158 0.00 0.00 0.00 3.62
3223 3328 2.282887 GGCACATTGGTCCGGGTT 60.283 61.111 0.00 0.00 0.00 4.11
3224 3329 3.256960 AGGCACATTGGTCCGGGT 61.257 61.111 0.00 0.00 0.00 5.28
3225 3330 2.438434 GAGGCACATTGGTCCGGG 60.438 66.667 0.00 0.00 0.00 5.73
3226 3331 2.819595 CGAGGCACATTGGTCCGG 60.820 66.667 0.00 0.00 0.00 5.14
3227 3332 3.499737 GCGAGGCACATTGGTCCG 61.500 66.667 0.00 0.00 0.00 4.79
3228 3333 2.045926 AGCGAGGCACATTGGTCC 60.046 61.111 0.00 0.00 0.00 4.46
3229 3334 2.109126 GGAGCGAGGCACATTGGTC 61.109 63.158 0.00 0.00 0.00 4.02
3230 3335 2.045926 GGAGCGAGGCACATTGGT 60.046 61.111 0.00 0.00 0.00 3.67
3231 3336 2.110967 CAGGAGCGAGGCACATTGG 61.111 63.158 0.00 0.00 0.00 3.16
3232 3337 2.110967 CCAGGAGCGAGGCACATTG 61.111 63.158 0.00 0.00 0.00 2.82
3233 3338 2.270205 CCAGGAGCGAGGCACATT 59.730 61.111 0.00 0.00 0.00 2.71
3248 3353 1.000233 GATCAATGGTGGTGGGCCA 60.000 57.895 0.00 0.00 43.73 5.36
3249 3354 1.758122 GGATCAATGGTGGTGGGCC 60.758 63.158 0.00 0.00 0.00 5.80
3250 3355 1.758122 GGGATCAATGGTGGTGGGC 60.758 63.158 0.00 0.00 0.00 5.36
3251 3356 1.453745 CGGGATCAATGGTGGTGGG 60.454 63.158 0.00 0.00 0.00 4.61
3252 3357 1.453745 CCGGGATCAATGGTGGTGG 60.454 63.158 0.00 0.00 0.00 4.61
3253 3358 0.323360 AACCGGGATCAATGGTGGTG 60.323 55.000 6.32 0.00 35.79 4.17
3254 3359 0.323360 CAACCGGGATCAATGGTGGT 60.323 55.000 6.32 0.00 35.79 4.16
3255 3360 0.034574 TCAACCGGGATCAATGGTGG 60.035 55.000 6.32 1.58 35.79 4.61
3256 3361 1.677576 CATCAACCGGGATCAATGGTG 59.322 52.381 6.32 0.00 35.79 4.17
3257 3362 1.410083 CCATCAACCGGGATCAATGGT 60.410 52.381 6.32 0.00 37.68 3.55
3258 3363 1.321474 CCATCAACCGGGATCAATGG 58.679 55.000 6.32 7.78 0.00 3.16
3259 3364 0.670162 GCCATCAACCGGGATCAATG 59.330 55.000 6.32 1.93 0.00 2.82
3260 3365 0.552848 AGCCATCAACCGGGATCAAT 59.447 50.000 6.32 0.00 0.00 2.57
3261 3366 0.331278 AAGCCATCAACCGGGATCAA 59.669 50.000 6.32 0.00 0.00 2.57
3262 3367 0.394216 CAAGCCATCAACCGGGATCA 60.394 55.000 6.32 0.00 0.00 2.92
3263 3368 0.107214 TCAAGCCATCAACCGGGATC 60.107 55.000 6.32 0.00 0.00 3.36
3264 3369 0.331278 TTCAAGCCATCAACCGGGAT 59.669 50.000 6.32 0.00 0.00 3.85
3265 3370 0.608035 GTTCAAGCCATCAACCGGGA 60.608 55.000 6.32 0.00 0.00 5.14
3266 3371 1.595093 GGTTCAAGCCATCAACCGGG 61.595 60.000 6.32 0.00 30.63 5.73
3267 3372 1.883021 GGTTCAAGCCATCAACCGG 59.117 57.895 0.00 0.00 30.63 5.28
3269 3374 1.595093 CCCGGTTCAAGCCATCAACC 61.595 60.000 0.00 0.00 36.91 3.77
3270 3375 0.608035 TCCCGGTTCAAGCCATCAAC 60.608 55.000 0.00 0.00 0.00 3.18
3271 3376 0.608035 GTCCCGGTTCAAGCCATCAA 60.608 55.000 0.00 0.00 0.00 2.57
3272 3377 1.002624 GTCCCGGTTCAAGCCATCA 60.003 57.895 0.00 0.00 0.00 3.07
3273 3378 0.539986 TAGTCCCGGTTCAAGCCATC 59.460 55.000 0.00 0.00 0.00 3.51
3274 3379 0.988832 TTAGTCCCGGTTCAAGCCAT 59.011 50.000 0.00 0.00 0.00 4.40
3275 3380 0.766131 TTTAGTCCCGGTTCAAGCCA 59.234 50.000 0.00 0.00 0.00 4.75
3276 3381 1.450025 CTTTAGTCCCGGTTCAAGCC 58.550 55.000 0.00 0.00 0.00 4.35
3277 3382 1.450025 CCTTTAGTCCCGGTTCAAGC 58.550 55.000 0.00 0.00 0.00 4.01
3278 3383 1.350019 ACCCTTTAGTCCCGGTTCAAG 59.650 52.381 0.00 0.00 0.00 3.02
3279 3384 1.072648 CACCCTTTAGTCCCGGTTCAA 59.927 52.381 0.00 0.00 0.00 2.69
3280 3385 0.688487 CACCCTTTAGTCCCGGTTCA 59.312 55.000 0.00 0.00 0.00 3.18
3281 3386 0.689055 ACACCCTTTAGTCCCGGTTC 59.311 55.000 0.00 0.00 0.00 3.62
3282 3387 0.689055 GACACCCTTTAGTCCCGGTT 59.311 55.000 0.00 0.00 0.00 4.44
3283 3388 1.196766 GGACACCCTTTAGTCCCGGT 61.197 60.000 0.00 0.00 46.79 5.28
3284 3389 1.600638 GGACACCCTTTAGTCCCGG 59.399 63.158 0.00 0.00 46.79 5.73
3295 3400 1.196766 ACCGGGACTAAAGGACACCC 61.197 60.000 6.32 0.00 37.42 4.61
3296 3401 0.689055 AACCGGGACTAAAGGACACC 59.311 55.000 6.32 0.00 0.00 4.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.