Multiple sequence alignment - TraesCS6B01G014600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G014600 chr6B 100.000 3170 0 0 1 3170 8890442 8887273 0.000000e+00 5854.0
1 TraesCS6B01G014600 chr6B 92.450 1563 118 0 917 2479 5555658 5554096 0.000000e+00 2233.0
2 TraesCS6B01G014600 chr6B 91.961 1530 118 3 888 2412 5072747 5071218 0.000000e+00 2139.0
3 TraesCS6B01G014600 chr6B 92.493 1452 104 3 888 2337 2803111 2801663 0.000000e+00 2073.0
4 TraesCS6B01G014600 chr6B 90.027 1494 146 3 917 2408 2809099 2807607 0.000000e+00 1930.0
5 TraesCS6B01G014600 chr6B 86.176 680 68 4 1707 2386 5077622 5076969 0.000000e+00 712.0
6 TraesCS6B01G014600 chr6B 88.129 278 17 4 1 274 2650079 2649814 1.840000e-82 316.0
7 TraesCS6B01G014600 chr6B 85.882 170 14 6 141 301 5560471 5560303 4.200000e-39 172.0
8 TraesCS6B01G014600 chr6B 77.370 327 43 22 141 449 2807191 2806878 7.030000e-37 165.0
9 TraesCS6B01G014600 chr6B 76.415 318 44 20 141 446 2818458 2818160 3.300000e-30 143.0
10 TraesCS6B01G014600 chr6B 100.000 30 0 0 446 475 2818323 2818294 4.420000e-04 56.5
11 TraesCS6B01G014600 chr6D 90.834 2182 132 23 365 2540 1372556 1374675 0.000000e+00 2859.0
12 TraesCS6B01G014600 chr6D 89.655 319 14 6 2 320 1372081 1372380 3.830000e-104 388.0
13 TraesCS6B01G014600 chr6D 87.970 133 9 3 141 267 1375595 1375726 1.970000e-32 150.0
14 TraesCS6B01G014600 chr6D 89.011 91 7 3 2947 3034 458139439 458139349 3.340000e-20 110.0
15 TraesCS6B01G014600 chr6D 88.764 89 7 3 2947 3034 458168694 458168608 4.320000e-19 106.0
16 TraesCS6B01G014600 chr6D 88.764 89 7 3 2947 3034 458198170 458198084 4.320000e-19 106.0
17 TraesCS6B01G014600 chr6D 88.764 89 7 3 2947 3034 458221682 458221596 4.320000e-19 106.0
18 TraesCS6B01G014600 chr6D 88.764 89 7 3 2947 3034 458228543 458228457 4.320000e-19 106.0
19 TraesCS6B01G014600 chr6D 88.764 89 7 3 2947 3034 458262535 458262449 4.320000e-19 106.0
20 TraesCS6B01G014600 chr6D 88.764 89 7 3 2947 3034 458292702 458292616 4.320000e-19 106.0
21 TraesCS6B01G014600 chr3A 92.518 1537 108 5 885 2421 731787505 731785976 0.000000e+00 2194.0
22 TraesCS6B01G014600 chr3A 85.567 194 13 9 613 804 731787811 731787631 4.170000e-44 189.0
23 TraesCS6B01G014600 chr3A 97.059 34 0 1 2655 2688 392769000 392769032 4.420000e-04 56.5
24 TraesCS6B01G014600 chr2D 80.420 286 56 0 1875 2160 640232168 640231883 5.320000e-53 219.0
25 TraesCS6B01G014600 chr2D 96.000 50 2 0 3088 3137 10970329 10970280 7.290000e-12 82.4
26 TraesCS6B01G014600 chr2D 96.000 50 2 0 3088 3137 10972906 10972955 7.290000e-12 82.4
27 TraesCS6B01G014600 chr7B 75.097 514 97 18 1708 2194 732647950 732648459 8.910000e-51 211.0
28 TraesCS6B01G014600 chr7B 73.171 287 65 10 1883 2160 653884215 653884498 3.370000e-15 93.5
29 TraesCS6B01G014600 chr2B 83.333 192 26 6 2846 3034 797706529 797706717 4.200000e-39 172.0
30 TraesCS6B01G014600 chr2B 96.000 50 2 0 3088 3137 631197089 631197138 7.290000e-12 82.4
31 TraesCS6B01G014600 chr2B 95.556 45 2 0 3088 3132 755009686 755009730 4.390000e-09 73.1
32 TraesCS6B01G014600 chrUn 88.764 89 7 3 2947 3034 362323651 362323565 4.320000e-19 106.0
33 TraesCS6B01G014600 chrUn 100.000 31 0 0 2813 2843 298160434 298160464 1.230000e-04 58.4
34 TraesCS6B01G014600 chrUn 94.595 37 2 0 2813 2849 381024543 381024507 1.230000e-04 58.4
35 TraesCS6B01G014600 chrUn 100.000 31 0 0 2813 2843 423538092 423538122 1.230000e-04 58.4
36 TraesCS6B01G014600 chr7D 96.000 50 2 0 3088 3137 564716373 564716422 7.290000e-12 82.4
37 TraesCS6B01G014600 chr7D 94.000 50 3 0 3088 3137 564717363 564717412 3.390000e-10 76.8
38 TraesCS6B01G014600 chr5B 96.000 50 2 0 3088 3137 689458987 689458938 7.290000e-12 82.4
39 TraesCS6B01G014600 chr7A 94.595 37 2 0 2813 2849 734160144 734160108 1.230000e-04 58.4
40 TraesCS6B01G014600 chr7A 94.595 37 1 1 3094 3130 1503831 1503796 4.420000e-04 56.5
41 TraesCS6B01G014600 chr7A 100.000 29 0 0 3093 3121 52330543 52330571 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G014600 chr6B 8887273 8890442 3169 True 5854.000000 5854 100.000000 1 3170 1 chr6B.!!$R6 3169
1 TraesCS6B01G014600 chr6B 5554096 5555658 1562 True 2233.000000 2233 92.450000 917 2479 1 chr6B.!!$R4 1562
2 TraesCS6B01G014600 chr6B 5071218 5072747 1529 True 2139.000000 2139 91.961000 888 2412 1 chr6B.!!$R2 1524
3 TraesCS6B01G014600 chr6B 2801663 2809099 7436 True 1389.333333 2073 86.630000 141 2408 3 chr6B.!!$R7 2267
4 TraesCS6B01G014600 chr6B 5076969 5077622 653 True 712.000000 712 86.176000 1707 2386 1 chr6B.!!$R3 679
5 TraesCS6B01G014600 chr6D 1372081 1375726 3645 False 1132.333333 2859 89.486333 2 2540 3 chr6D.!!$F1 2538
6 TraesCS6B01G014600 chr3A 731785976 731787811 1835 True 1191.500000 2194 89.042500 613 2421 2 chr3A.!!$R1 1808
7 TraesCS6B01G014600 chr7B 732647950 732648459 509 False 211.000000 211 75.097000 1708 2194 1 chr7B.!!$F2 486

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
573 6052 0.03601 AGATGGAGGCCAGACGTTTG 60.036 55.0 5.01 0.0 36.75 2.93 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2554 8245 0.249489 CCGGTGCACTCATACCTAGC 60.249 60.0 17.98 0.0 34.77 3.42 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 2.944390 CCCTAACCCTGGCCCCAA 60.944 66.667 0.00 0.00 0.00 4.12
129 130 6.318648 TCACTCTTGTAAATTTGAACTGTGCT 59.681 34.615 0.00 0.00 0.00 4.40
130 131 6.415867 CACTCTTGTAAATTTGAACTGTGCTG 59.584 38.462 0.00 0.00 0.00 4.41
131 132 5.280945 TCTTGTAAATTTGAACTGTGCTGC 58.719 37.500 0.00 0.00 0.00 5.25
132 133 3.976169 TGTAAATTTGAACTGTGCTGCC 58.024 40.909 0.00 0.00 0.00 4.85
251 2025 6.683974 ATTACAGCCTTATACAGTGCTTTG 57.316 37.500 0.00 0.00 29.29 2.77
253 2027 4.003648 ACAGCCTTATACAGTGCTTTGAC 58.996 43.478 0.00 0.00 29.29 3.18
277 2051 2.708865 CGTACGGGTGCATGCATG 59.291 61.111 25.64 22.70 0.00 4.06
279 2053 1.159713 CGTACGGGTGCATGCATGAT 61.160 55.000 30.64 12.41 0.00 2.45
280 2054 0.308684 GTACGGGTGCATGCATGATG 59.691 55.000 30.64 16.14 34.84 3.07
306 2080 1.947678 GCTCAGGACTCAACATGTGGG 60.948 57.143 0.00 0.00 0.00 4.61
326 2100 3.626154 GAGACTTCGATGGTCCGTC 57.374 57.895 13.19 0.37 34.56 4.79
327 2101 1.096416 GAGACTTCGATGGTCCGTCT 58.904 55.000 9.46 2.21 37.63 4.18
328 2102 1.473278 GAGACTTCGATGGTCCGTCTT 59.527 52.381 9.46 0.00 35.29 3.01
330 2104 0.389948 ACTTCGATGGTCCGTCTTGC 60.390 55.000 9.46 0.00 0.00 4.01
331 2105 0.389817 CTTCGATGGTCCGTCTTGCA 60.390 55.000 9.46 0.00 0.00 4.08
334 2108 0.740868 CGATGGTCCGTCTTGCATGT 60.741 55.000 9.46 0.00 0.00 3.21
335 2109 0.729116 GATGGTCCGTCTTGCATGTG 59.271 55.000 3.60 0.00 0.00 3.21
336 2110 0.036732 ATGGTCCGTCTTGCATGTGT 59.963 50.000 0.00 0.00 0.00 3.72
337 2111 0.179032 TGGTCCGTCTTGCATGTGTT 60.179 50.000 0.00 0.00 0.00 3.32
339 2113 0.517316 GTCCGTCTTGCATGTGTTCC 59.483 55.000 0.00 0.00 0.00 3.62
341 2115 0.888736 CCGTCTTGCATGTGTTCCCA 60.889 55.000 0.00 0.00 0.00 4.37
342 2116 0.950836 CGTCTTGCATGTGTTCCCAA 59.049 50.000 0.00 0.00 0.00 4.12
343 2117 1.336440 CGTCTTGCATGTGTTCCCAAA 59.664 47.619 0.00 0.00 0.00 3.28
345 2119 3.552684 CGTCTTGCATGTGTTCCCAAATT 60.553 43.478 0.00 0.00 0.00 1.82
346 2120 4.320861 CGTCTTGCATGTGTTCCCAAATTA 60.321 41.667 0.00 0.00 0.00 1.40
347 2121 5.537188 GTCTTGCATGTGTTCCCAAATTAA 58.463 37.500 0.00 0.00 0.00 1.40
348 2122 5.634859 GTCTTGCATGTGTTCCCAAATTAAG 59.365 40.000 0.00 0.00 0.00 1.85
349 2123 3.924144 TGCATGTGTTCCCAAATTAAGC 58.076 40.909 0.00 0.00 0.00 3.09
351 2125 3.679502 GCATGTGTTCCCAAATTAAGCAC 59.320 43.478 0.00 0.00 0.00 4.40
352 2126 4.244862 CATGTGTTCCCAAATTAAGCACC 58.755 43.478 0.00 0.00 0.00 5.01
353 2127 3.300388 TGTGTTCCCAAATTAAGCACCA 58.700 40.909 0.00 0.00 0.00 4.17
354 2128 3.900601 TGTGTTCCCAAATTAAGCACCAT 59.099 39.130 0.00 0.00 0.00 3.55
355 2129 4.244862 GTGTTCCCAAATTAAGCACCATG 58.755 43.478 0.00 0.00 0.00 3.66
356 2130 4.021544 GTGTTCCCAAATTAAGCACCATGA 60.022 41.667 0.00 0.00 0.00 3.07
357 2131 4.220382 TGTTCCCAAATTAAGCACCATGAG 59.780 41.667 0.00 0.00 0.00 2.90
358 2132 4.046286 TCCCAAATTAAGCACCATGAGT 57.954 40.909 0.00 0.00 0.00 3.41
359 2133 5.186256 TCCCAAATTAAGCACCATGAGTA 57.814 39.130 0.00 0.00 0.00 2.59
360 2134 4.947388 TCCCAAATTAAGCACCATGAGTAC 59.053 41.667 0.00 0.00 0.00 2.73
361 2135 4.097892 CCCAAATTAAGCACCATGAGTACC 59.902 45.833 0.00 0.00 0.00 3.34
362 2136 4.704540 CCAAATTAAGCACCATGAGTACCA 59.295 41.667 0.00 0.00 0.00 3.25
363 2137 5.163622 CCAAATTAAGCACCATGAGTACCAG 60.164 44.000 0.00 0.00 0.00 4.00
364 2138 4.844349 ATTAAGCACCATGAGTACCAGT 57.156 40.909 0.00 0.00 0.00 4.00
365 2139 5.950544 ATTAAGCACCATGAGTACCAGTA 57.049 39.130 0.00 0.00 0.00 2.74
366 2140 3.611766 AAGCACCATGAGTACCAGTAC 57.388 47.619 0.00 0.00 36.35 2.73
370 2144 5.702266 AGCACCATGAGTACCAGTACTATA 58.298 41.667 10.37 4.04 45.63 1.31
372 2146 6.434652 AGCACCATGAGTACCAGTACTATATC 59.565 42.308 10.37 0.00 45.63 1.63
373 2147 6.434652 GCACCATGAGTACCAGTACTATATCT 59.565 42.308 10.37 0.00 45.63 1.98
374 2148 7.575909 GCACCATGAGTACCAGTACTATATCTG 60.576 44.444 10.37 5.55 45.63 2.90
469 2373 0.319900 TTCACTGCAGCCGAGACTTC 60.320 55.000 15.27 0.00 0.00 3.01
487 2391 3.438087 ACTTCAATGGACTTCAATGCTCG 59.562 43.478 0.00 0.00 0.00 5.03
541 6020 3.369381 GCATGTGGCGACATAGTCT 57.631 52.632 14.40 0.00 46.14 3.24
544 6023 2.196749 CATGTGGCGACATAGTCTGAC 58.803 52.381 14.40 0.00 46.14 3.51
548 6027 0.172803 GGCGACATAGTCTGACCGTT 59.827 55.000 3.76 0.00 0.00 4.44
549 6028 1.546834 GCGACATAGTCTGACCGTTC 58.453 55.000 3.76 0.00 0.00 3.95
556 6035 4.456911 ACATAGTCTGACCGTTCGTTAAGA 59.543 41.667 3.76 0.00 0.00 2.10
557 6036 5.125097 ACATAGTCTGACCGTTCGTTAAGAT 59.875 40.000 3.76 0.00 0.00 2.40
565 6044 1.404986 CGTTCGTTAAGATGGAGGCCA 60.405 52.381 5.01 0.00 38.19 5.36
572 6051 0.693049 AAGATGGAGGCCAGACGTTT 59.307 50.000 5.01 0.00 36.75 3.60
573 6052 0.036010 AGATGGAGGCCAGACGTTTG 60.036 55.000 5.01 0.00 36.75 2.93
574 6053 1.002134 ATGGAGGCCAGACGTTTGG 60.002 57.895 20.42 20.42 36.75 3.28
603 6082 1.860326 CAGCCAAAAGTTGAAAAGGCG 59.140 47.619 0.00 0.00 46.34 5.52
604 6083 1.754226 AGCCAAAAGTTGAAAAGGCGA 59.246 42.857 0.00 0.00 46.34 5.54
939 6488 1.135402 GTTGGTGCCAAGGATTTAGCG 60.135 52.381 3.57 0.00 36.52 4.26
955 6504 2.279935 AGCGGTGGATGTTGGTTTTA 57.720 45.000 0.00 0.00 0.00 1.52
975 6524 5.995565 TTACTCTTAGGCACTGAAGCTTA 57.004 39.130 0.00 0.00 41.52 3.09
995 6544 3.787001 GGCCACGAGGGAGGGAAG 61.787 72.222 0.00 0.00 40.01 3.46
1019 6568 0.689080 ATGATGCCGGACAGGAGAGT 60.689 55.000 5.05 0.00 45.00 3.24
1024 6573 3.432588 CGGACAGGAGAGTCGCGT 61.433 66.667 5.77 0.00 39.42 6.01
1090 6639 2.112297 GGTTGCCGTCCAAGGACA 59.888 61.111 18.57 0.00 44.77 4.02
1140 6689 3.623848 GTGCACTACCACATCCACA 57.376 52.632 10.32 0.00 35.80 4.17
1241 6790 4.697756 CTTCCACTCCGCCGGCAA 62.698 66.667 28.98 13.23 0.00 4.52
1282 6831 2.590575 CCCGGTGCGTCAAACACT 60.591 61.111 0.00 0.00 38.14 3.55
1296 6845 3.994392 TCAAACACTACTCCGAGATTTGC 59.006 43.478 1.33 0.00 31.67 3.68
1305 6854 1.281867 TCCGAGATTTGCCTTCATGGT 59.718 47.619 0.00 0.00 38.35 3.55
1359 6908 3.191162 TGCACCAATTCTACATCTGCAAC 59.809 43.478 0.00 0.00 30.48 4.17
1371 6920 0.916086 TCTGCAACCCGGTTATCCAT 59.084 50.000 1.43 0.00 0.00 3.41
1374 6923 1.560146 TGCAACCCGGTTATCCATACA 59.440 47.619 1.43 0.00 0.00 2.29
1390 6939 1.399714 TACACATGCTCTCCTACCCG 58.600 55.000 0.00 0.00 0.00 5.28
1408 6957 1.364626 CGAGCCTCATGTTGAGCACC 61.365 60.000 0.00 0.00 42.98 5.01
1680 7229 2.472695 TGCACTGGTGTCCTTATGAC 57.527 50.000 2.64 0.00 44.72 3.06
1702 7251 0.881118 CACTGAAATTGGGGGACACG 59.119 55.000 0.00 0.00 0.00 4.49
1725 7274 5.177511 CGGCACAGATATTATTGTGTTCGAT 59.822 40.000 17.53 0.00 44.95 3.59
1745 7294 0.976641 ACAGAAGCCGAGTCATTCCA 59.023 50.000 0.00 0.00 0.00 3.53
1755 7304 0.615331 AGTCATTCCAGTGGATGCGT 59.385 50.000 14.00 0.00 0.00 5.24
1858 7420 1.040646 GACCGCTATGGATGTCTGGA 58.959 55.000 0.00 0.00 42.00 3.86
1872 7434 2.700371 TGTCTGGACGATGCAGGATTAT 59.300 45.455 0.00 0.00 36.40 1.28
1887 7465 5.163713 GCAGGATTATGTCTGGACTTTCAAC 60.164 44.000 2.38 0.00 0.00 3.18
1969 7548 7.387673 CCAAAAAGAAAAAGAGAACACCACTTT 59.612 33.333 0.00 0.00 35.74 2.66
1997 7576 3.379372 ACAGTGCAATGGCTCAATGATAC 59.621 43.478 19.57 0.00 41.91 2.24
2107 7691 3.186613 GGTGAACATCGGAAAGAGTCAAC 59.813 47.826 0.00 0.00 0.00 3.18
2133 7721 2.401583 TGATGCTTAATCACTGCCGT 57.598 45.000 0.00 0.00 40.50 5.68
2161 7751 6.705863 AAGAGAGCATTATTCCAATTCCAC 57.294 37.500 0.00 0.00 0.00 4.02
2215 7805 3.567478 AGTTTTCACTCTCTGCAAGGT 57.433 42.857 0.00 0.00 0.00 3.50
2239 7829 5.702670 TGTGTCTGAATGTTCAAGATTCCTC 59.297 40.000 4.87 0.00 36.64 3.71
2252 7842 0.676782 ATTCCTCGTTTGCTTCCCCG 60.677 55.000 0.00 0.00 0.00 5.73
2275 7865 7.257722 CCGTTGGATTTAGAGCATGTATTTTT 58.742 34.615 0.00 0.00 0.00 1.94
2380 7976 7.602644 GTCTGGTTCTTATTGTGATGTCTTGTA 59.397 37.037 0.00 0.00 0.00 2.41
2416 8012 8.874156 TCTGAAATATGGAGTATCTGTTAGCAT 58.126 33.333 0.00 0.00 33.73 3.79
2482 8078 0.538516 TTGCATGCCGTTAGTTGGGT 60.539 50.000 16.68 0.00 0.00 4.51
2486 8082 1.333619 CATGCCGTTAGTTGGGTATGC 59.666 52.381 0.00 0.00 39.10 3.14
2514 8110 2.105128 CTGATCGTGGACTCGGCC 59.895 66.667 0.00 0.00 0.00 6.13
2554 8245 2.292016 CGTCATGGAGAGTGGTAGCTAG 59.708 54.545 0.00 0.00 0.00 3.42
2560 8251 2.158579 GGAGAGTGGTAGCTAGCTAGGT 60.159 54.545 27.23 27.23 37.80 3.08
2564 8255 4.351407 AGAGTGGTAGCTAGCTAGGTATGA 59.649 45.833 29.81 18.86 38.40 2.15
2603 8294 2.197465 ACCCTCCCCTTTGTACTGATC 58.803 52.381 0.00 0.00 0.00 2.92
2610 8301 0.914551 CTTTGTACTGATCCGCGACG 59.085 55.000 8.23 0.00 0.00 5.12
2627 8318 3.660111 GGTGTGTTGCCGAGCCAC 61.660 66.667 0.00 0.00 0.00 5.01
2638 8329 0.602638 CCGAGCCACAGTTTGTGCTA 60.603 55.000 3.72 0.00 46.51 3.49
2639 8330 1.225855 CGAGCCACAGTTTGTGCTAA 58.774 50.000 3.72 0.00 46.51 3.09
2640 8331 1.069906 CGAGCCACAGTTTGTGCTAAC 60.070 52.381 3.72 0.00 46.51 2.34
2712 8404 3.472652 TGTCGCTTGAAATACCTTGTGT 58.527 40.909 0.00 0.00 0.00 3.72
2713 8405 3.880490 TGTCGCTTGAAATACCTTGTGTT 59.120 39.130 0.00 0.00 0.00 3.32
2730 8422 2.945668 GTGTTCAGTGTGCTCCTTCTTT 59.054 45.455 0.00 0.00 0.00 2.52
2737 8429 2.291741 GTGTGCTCCTTCTTTCACCTTG 59.708 50.000 0.00 0.00 0.00 3.61
2742 8434 3.406764 CTCCTTCTTTCACCTTGGTCTG 58.593 50.000 0.00 0.00 0.00 3.51
2744 8436 3.071602 TCCTTCTTTCACCTTGGTCTGAG 59.928 47.826 0.00 0.00 0.00 3.35
2745 8437 2.550830 TCTTTCACCTTGGTCTGAGC 57.449 50.000 0.00 0.00 0.00 4.26
2748 8440 0.756294 TTCACCTTGGTCTGAGCGAA 59.244 50.000 2.07 0.00 0.00 4.70
2754 8446 2.266554 CTTGGTCTGAGCGAATGAGAC 58.733 52.381 2.07 0.00 36.22 3.36
2759 8459 2.421775 GTCTGAGCGAATGAGACAGAGA 59.578 50.000 0.00 0.00 38.09 3.10
2761 8461 1.133982 TGAGCGAATGAGACAGAGAGC 59.866 52.381 0.00 0.00 0.00 4.09
2778 8478 3.571741 GCGCTAGCTAGGAATCGTT 57.428 52.632 22.10 0.00 41.01 3.85
2781 8481 2.656085 CGCTAGCTAGGAATCGTTCAG 58.344 52.381 22.10 0.00 0.00 3.02
2783 8483 2.223829 GCTAGCTAGGAATCGTTCAGCA 60.224 50.000 22.10 0.00 32.75 4.41
2791 8491 2.159627 GGAATCGTTCAGCATTCGTGTT 59.840 45.455 0.00 0.00 30.82 3.32
2792 8492 3.369756 GGAATCGTTCAGCATTCGTGTTA 59.630 43.478 0.00 0.00 30.82 2.41
2793 8493 4.034048 GGAATCGTTCAGCATTCGTGTTAT 59.966 41.667 0.00 0.00 30.82 1.89
2794 8494 5.447279 GGAATCGTTCAGCATTCGTGTTATT 60.447 40.000 0.00 0.00 30.82 1.40
2796 8496 2.840176 CGTTCAGCATTCGTGTTATTGC 59.160 45.455 0.00 0.00 35.34 3.56
2797 8497 3.424829 CGTTCAGCATTCGTGTTATTGCT 60.425 43.478 0.00 0.00 45.86 3.91
2798 8498 4.091424 GTTCAGCATTCGTGTTATTGCTC 58.909 43.478 0.00 0.00 43.25 4.26
2799 8499 3.333804 TCAGCATTCGTGTTATTGCTCA 58.666 40.909 0.00 0.00 43.25 4.26
2800 8500 3.125146 TCAGCATTCGTGTTATTGCTCAC 59.875 43.478 0.00 0.00 43.25 3.51
2801 8501 2.420022 AGCATTCGTGTTATTGCTCACC 59.580 45.455 0.00 0.00 41.38 4.02
2803 8503 3.621268 GCATTCGTGTTATTGCTCACCTA 59.379 43.478 0.00 0.00 32.41 3.08
2804 8504 4.273480 GCATTCGTGTTATTGCTCACCTAT 59.727 41.667 0.00 0.00 32.41 2.57
2805 8505 5.741425 CATTCGTGTTATTGCTCACCTATG 58.259 41.667 0.00 0.00 0.00 2.23
2806 8506 4.729227 TCGTGTTATTGCTCACCTATGA 57.271 40.909 0.00 0.00 0.00 2.15
2807 8507 5.276461 TCGTGTTATTGCTCACCTATGAT 57.724 39.130 0.00 0.00 33.22 2.45
2809 8509 5.523552 TCGTGTTATTGCTCACCTATGATTG 59.476 40.000 0.00 0.00 33.22 2.67
2810 8510 5.294306 CGTGTTATTGCTCACCTATGATTGT 59.706 40.000 0.00 0.00 33.22 2.71
2812 8512 5.523552 TGTTATTGCTCACCTATGATTGTCG 59.476 40.000 0.00 0.00 33.22 4.35
2814 8514 2.107366 TGCTCACCTATGATTGTCGGA 58.893 47.619 0.00 0.00 33.22 4.55
2815 8515 2.499693 TGCTCACCTATGATTGTCGGAA 59.500 45.455 0.00 0.00 33.22 4.30
2820 8520 7.943387 CTCACCTATGATTGTCGGAACCGAG 62.943 52.000 16.35 4.25 40.87 4.63
2838 8538 2.876091 GAGGATCGACGAACAATCACA 58.124 47.619 0.00 0.00 0.00 3.58
2839 8539 3.250744 GAGGATCGACGAACAATCACAA 58.749 45.455 0.00 0.00 0.00 3.33
2840 8540 3.254060 AGGATCGACGAACAATCACAAG 58.746 45.455 0.00 0.00 0.00 3.16
2841 8541 3.056821 AGGATCGACGAACAATCACAAGA 60.057 43.478 0.00 0.00 0.00 3.02
2843 8543 4.330074 GGATCGACGAACAATCACAAGAAT 59.670 41.667 0.00 0.00 0.00 2.40
2846 8546 4.074949 CGACGAACAATCACAAGAATTCG 58.925 43.478 0.00 0.00 40.52 3.34
2847 8547 4.143410 CGACGAACAATCACAAGAATTCGA 60.143 41.667 10.78 0.00 38.71 3.71
2849 8549 4.152402 ACGAACAATCACAAGAATTCGAGG 59.848 41.667 10.78 0.00 38.71 4.63
2851 8551 5.445142 CGAACAATCACAAGAATTCGAGGAG 60.445 44.000 0.00 0.00 38.71 3.69
2852 8552 5.152623 ACAATCACAAGAATTCGAGGAGA 57.847 39.130 0.00 0.00 0.00 3.71
2853 8553 4.932200 ACAATCACAAGAATTCGAGGAGAC 59.068 41.667 0.00 0.00 0.00 3.36
2854 8554 3.217599 TCACAAGAATTCGAGGAGACG 57.782 47.619 0.00 0.00 0.00 4.18
2857 8557 4.082190 TCACAAGAATTCGAGGAGACGATT 60.082 41.667 0.00 0.00 41.82 3.34
2858 8558 4.627467 CACAAGAATTCGAGGAGACGATTT 59.373 41.667 0.00 0.00 41.82 2.17
2859 8559 5.120830 CACAAGAATTCGAGGAGACGATTTT 59.879 40.000 0.00 0.00 41.82 1.82
2860 8560 5.120830 ACAAGAATTCGAGGAGACGATTTTG 59.879 40.000 0.00 0.00 41.82 2.44
2861 8561 3.619038 AGAATTCGAGGAGACGATTTTGC 59.381 43.478 0.00 0.00 41.82 3.68
2862 8562 1.722011 TTCGAGGAGACGATTTTGCC 58.278 50.000 0.00 0.00 41.82 4.52
2863 8563 0.457853 TCGAGGAGACGATTTTGCCG 60.458 55.000 0.00 0.00 37.37 5.69
2864 8564 1.421410 CGAGGAGACGATTTTGCCGG 61.421 60.000 0.00 0.00 35.09 6.13
2865 8565 0.108329 GAGGAGACGATTTTGCCGGA 60.108 55.000 5.05 0.00 0.00 5.14
2866 8566 0.391263 AGGAGACGATTTTGCCGGAC 60.391 55.000 5.05 0.00 0.00 4.79
2867 8567 1.693083 GGAGACGATTTTGCCGGACG 61.693 60.000 5.05 2.70 0.00 4.79
2868 8568 0.734942 GAGACGATTTTGCCGGACGA 60.735 55.000 5.05 0.00 0.00 4.20
2869 8569 0.108329 AGACGATTTTGCCGGACGAT 60.108 50.000 5.05 0.00 0.00 3.73
2872 8572 2.348660 ACGATTTTGCCGGACGATAAA 58.651 42.857 5.05 0.00 0.00 1.40
2873 8573 2.094734 ACGATTTTGCCGGACGATAAAC 59.905 45.455 5.05 0.00 0.00 2.01
2875 8575 0.166379 TTTTGCCGGACGATAAACGC 59.834 50.000 5.05 0.00 46.94 4.84
2878 8578 2.574222 GCCGGACGATAAACGCTCG 61.574 63.158 5.05 0.00 46.94 5.03
2879 8579 2.574222 CCGGACGATAAACGCTCGC 61.574 63.158 0.00 0.00 46.94 5.03
2880 8580 2.574222 CGGACGATAAACGCTCGCC 61.574 63.158 0.00 0.00 46.94 5.54
2881 8581 2.574222 GGACGATAAACGCTCGCCG 61.574 63.158 0.00 0.00 46.94 6.46
2923 8623 3.744719 GACGCCGGGGCCTTTTTC 61.745 66.667 19.97 3.39 37.98 2.29
2925 8625 2.045731 CGCCGGGGCCTTTTTCTA 60.046 61.111 5.22 0.00 37.98 2.10
2926 8626 1.453197 CGCCGGGGCCTTTTTCTAT 60.453 57.895 5.22 0.00 37.98 1.98
2927 8627 1.444917 CGCCGGGGCCTTTTTCTATC 61.445 60.000 5.22 0.00 37.98 2.08
2928 8628 0.106669 GCCGGGGCCTTTTTCTATCT 60.107 55.000 2.18 0.00 34.56 1.98
2929 8629 1.685180 GCCGGGGCCTTTTTCTATCTT 60.685 52.381 2.18 0.00 34.56 2.40
2930 8630 2.024414 CCGGGGCCTTTTTCTATCTTG 58.976 52.381 0.84 0.00 0.00 3.02
2931 8631 2.620627 CCGGGGCCTTTTTCTATCTTGT 60.621 50.000 0.84 0.00 0.00 3.16
2932 8632 3.371166 CCGGGGCCTTTTTCTATCTTGTA 60.371 47.826 0.84 0.00 0.00 2.41
2933 8633 4.461198 CGGGGCCTTTTTCTATCTTGTAT 58.539 43.478 0.84 0.00 0.00 2.29
2934 8634 4.887655 CGGGGCCTTTTTCTATCTTGTATT 59.112 41.667 0.84 0.00 0.00 1.89
2936 8636 6.459710 CGGGGCCTTTTTCTATCTTGTATTTC 60.460 42.308 0.84 0.00 0.00 2.17
2937 8637 6.607600 GGGGCCTTTTTCTATCTTGTATTTCT 59.392 38.462 0.84 0.00 0.00 2.52
2939 8639 8.191446 GGGCCTTTTTCTATCTTGTATTTCTTC 58.809 37.037 0.84 0.00 0.00 2.87
2941 8641 8.961634 GCCTTTTTCTATCTTGTATTTCTTCCT 58.038 33.333 0.00 0.00 0.00 3.36
2945 8645 9.587772 TTTTCTATCTTGTATTTCTTCCTCTCG 57.412 33.333 0.00 0.00 0.00 4.04
2946 8646 7.278461 TCTATCTTGTATTTCTTCCTCTCGG 57.722 40.000 0.00 0.00 0.00 4.63
2947 8647 4.124851 TCTTGTATTTCTTCCTCTCGGC 57.875 45.455 0.00 0.00 0.00 5.54
2949 8649 3.802948 TGTATTTCTTCCTCTCGGCTC 57.197 47.619 0.00 0.00 0.00 4.70
2950 8650 3.096852 TGTATTTCTTCCTCTCGGCTCA 58.903 45.455 0.00 0.00 0.00 4.26
2951 8651 3.706594 TGTATTTCTTCCTCTCGGCTCAT 59.293 43.478 0.00 0.00 0.00 2.90
2952 8652 2.969628 TTTCTTCCTCTCGGCTCATC 57.030 50.000 0.00 0.00 0.00 2.92
2953 8653 1.115467 TTCTTCCTCTCGGCTCATCC 58.885 55.000 0.00 0.00 0.00 3.51
2954 8654 0.033109 TCTTCCTCTCGGCTCATCCA 60.033 55.000 0.00 0.00 34.01 3.41
2955 8655 0.388659 CTTCCTCTCGGCTCATCCAG 59.611 60.000 0.00 0.00 34.01 3.86
2956 8656 1.045350 TTCCTCTCGGCTCATCCAGG 61.045 60.000 0.00 0.00 34.01 4.45
2958 8658 1.739049 CTCTCGGCTCATCCAGGAC 59.261 63.158 0.00 0.00 34.01 3.85
2961 8661 1.667154 CTCGGCTCATCCAGGACGAA 61.667 60.000 0.00 0.00 34.01 3.85
2962 8662 1.227089 CGGCTCATCCAGGACGAAG 60.227 63.158 0.00 0.00 34.01 3.79
2963 8663 1.901085 GGCTCATCCAGGACGAAGT 59.099 57.895 0.00 0.00 38.20 3.01
2964 8664 0.460987 GGCTCATCCAGGACGAAGTG 60.461 60.000 0.00 0.00 35.92 3.16
2965 8665 2.838738 GGCTCATCCAGGACGAAGTGA 61.839 57.143 0.00 0.00 35.92 3.41
2966 8666 4.119583 GGCTCATCCAGGACGAAGTGAT 62.120 54.545 0.00 0.00 35.92 3.06
2967 8667 5.898535 GGCTCATCCAGGACGAAGTGATC 62.899 56.522 0.00 0.00 35.92 2.92
2975 8675 2.754648 ACGAAGTGATCACATGGCG 58.245 52.632 27.02 23.09 42.51 5.69
2977 8677 1.078709 CGAAGTGATCACATGGCGTT 58.921 50.000 27.02 11.73 0.00 4.84
2978 8678 1.464608 CGAAGTGATCACATGGCGTTT 59.535 47.619 27.02 11.00 0.00 3.60
2979 8679 2.095768 CGAAGTGATCACATGGCGTTTT 60.096 45.455 27.02 10.27 0.00 2.43
2981 8681 4.201812 CGAAGTGATCACATGGCGTTTTAT 60.202 41.667 27.02 0.00 0.00 1.40
2984 8684 4.574828 AGTGATCACATGGCGTTTTATACC 59.425 41.667 27.02 0.00 0.00 2.73
2986 8686 3.351794 TCACATGGCGTTTTATACCCA 57.648 42.857 0.00 0.00 33.45 4.51
2987 8687 3.011119 TCACATGGCGTTTTATACCCAC 58.989 45.455 0.00 0.00 32.26 4.61
2988 8688 2.011222 ACATGGCGTTTTATACCCACG 58.989 47.619 0.00 0.00 36.98 4.94
2991 8691 1.349282 GCGTTTTATACCCACGGCG 59.651 57.895 4.80 4.80 34.42 6.46
2992 8692 1.349282 CGTTTTATACCCACGGCGC 59.651 57.895 6.90 0.00 0.00 6.53
2993 8693 1.723273 GTTTTATACCCACGGCGCC 59.277 57.895 19.07 19.07 0.00 6.53
2994 8694 0.745486 GTTTTATACCCACGGCGCCT 60.745 55.000 26.68 7.77 0.00 5.52
2996 8696 0.390124 TTTATACCCACGGCGCCTAG 59.610 55.000 26.68 16.52 0.00 3.02
3013 8713 4.410743 GCAACTGCTTCCTGCCGC 62.411 66.667 0.00 0.00 42.00 6.53
3014 8714 4.093952 CAACTGCTTCCTGCCGCG 62.094 66.667 0.00 0.00 42.00 6.46
3030 8730 3.081133 CGCTCACCGCACATACAC 58.919 61.111 0.00 0.00 39.08 2.90
3031 8731 2.788176 CGCTCACCGCACATACACG 61.788 63.158 0.00 0.00 39.08 4.49
3032 8732 3.081133 CTCACCGCACATACACGC 58.919 61.111 0.00 0.00 0.00 5.34
3033 8733 1.736282 CTCACCGCACATACACGCA 60.736 57.895 0.00 0.00 0.00 5.24
3035 8735 0.173708 TCACCGCACATACACGCATA 59.826 50.000 0.00 0.00 0.00 3.14
3036 8736 1.003108 CACCGCACATACACGCATAA 58.997 50.000 0.00 0.00 0.00 1.90
3038 8738 0.042188 CCGCACATACACGCATAAGC 60.042 55.000 0.00 0.00 37.42 3.09
3039 8739 0.930310 CGCACATACACGCATAAGCT 59.070 50.000 0.00 0.00 39.10 3.74
3041 8741 1.261619 GCACATACACGCATAAGCTCC 59.738 52.381 0.00 0.00 39.10 4.70
3042 8742 2.826428 CACATACACGCATAAGCTCCT 58.174 47.619 0.00 0.00 39.10 3.69
3043 8743 2.541346 CACATACACGCATAAGCTCCTG 59.459 50.000 0.00 0.00 39.10 3.86
3044 8744 2.138320 CATACACGCATAAGCTCCTGG 58.862 52.381 0.00 0.00 39.10 4.45
3045 8745 1.480789 TACACGCATAAGCTCCTGGA 58.519 50.000 0.00 0.00 39.10 3.86
3047 8747 0.461548 CACGCATAAGCTCCTGGAGA 59.538 55.000 27.53 6.98 39.10 3.71
3048 8748 0.461961 ACGCATAAGCTCCTGGAGAC 59.538 55.000 27.53 17.40 39.10 3.36
3050 8750 0.107643 GCATAAGCTCCTGGAGACCC 59.892 60.000 27.53 9.71 37.91 4.46
3051 8751 0.390860 CATAAGCTCCTGGAGACCCG 59.609 60.000 27.53 7.00 34.29 5.28
3052 8752 0.760945 ATAAGCTCCTGGAGACCCGG 60.761 60.000 27.53 0.00 38.61 5.73
3055 8755 4.787280 CTCCTGGAGACCCGGCCT 62.787 72.222 19.13 0.00 37.51 5.19
3064 8764 4.764771 ACCCGGCCTGCCTACGTA 62.765 66.667 6.60 0.00 0.00 3.57
3065 8765 4.217159 CCCGGCCTGCCTACGTAC 62.217 72.222 6.60 0.00 0.00 3.67
3066 8766 4.564116 CCGGCCTGCCTACGTACG 62.564 72.222 15.01 15.01 0.00 3.67
3070 8770 2.882876 CCTGCCTACGTACGCACT 59.117 61.111 16.72 0.00 0.00 4.40
3071 8771 1.996786 GCCTGCCTACGTACGCACTA 61.997 60.000 16.72 0.00 0.00 2.74
3072 8772 0.452987 CCTGCCTACGTACGCACTAA 59.547 55.000 16.72 0.00 0.00 2.24
3073 8773 1.066605 CCTGCCTACGTACGCACTAAT 59.933 52.381 16.72 0.00 0.00 1.73
3074 8774 2.382519 CTGCCTACGTACGCACTAATC 58.617 52.381 16.72 0.00 0.00 1.75
3076 8776 1.066002 GCCTACGTACGCACTAATCCA 59.934 52.381 16.72 0.00 0.00 3.41
3077 8777 2.857489 GCCTACGTACGCACTAATCCAG 60.857 54.545 16.72 0.00 0.00 3.86
3078 8778 2.382519 CTACGTACGCACTAATCCAGC 58.617 52.381 16.72 0.00 0.00 4.85
3079 8779 0.815734 ACGTACGCACTAATCCAGCT 59.184 50.000 16.72 0.00 0.00 4.24
3084 8784 3.328382 ACGCACTAATCCAGCTAACAA 57.672 42.857 0.00 0.00 0.00 2.83
3085 8785 3.670625 ACGCACTAATCCAGCTAACAAA 58.329 40.909 0.00 0.00 0.00 2.83
3086 8786 3.435671 ACGCACTAATCCAGCTAACAAAC 59.564 43.478 0.00 0.00 0.00 2.93
3088 8788 3.756434 GCACTAATCCAGCTAACAAACCA 59.244 43.478 0.00 0.00 0.00 3.67
3089 8789 4.217550 GCACTAATCCAGCTAACAAACCAA 59.782 41.667 0.00 0.00 0.00 3.67
3090 8790 5.699839 CACTAATCCAGCTAACAAACCAAC 58.300 41.667 0.00 0.00 0.00 3.77
3092 8792 2.623878 TCCAGCTAACAAACCAACGA 57.376 45.000 0.00 0.00 0.00 3.85
3093 8793 2.215196 TCCAGCTAACAAACCAACGAC 58.785 47.619 0.00 0.00 0.00 4.34
3094 8794 1.265905 CCAGCTAACAAACCAACGACC 59.734 52.381 0.00 0.00 0.00 4.79
3096 8796 0.236449 GCTAACAAACCAACGACCGG 59.764 55.000 0.00 0.00 0.00 5.28
3098 8798 1.165284 TAACAAACCAACGACCGGCC 61.165 55.000 0.00 0.00 0.00 6.13
3099 8799 2.902846 CAAACCAACGACCGGCCA 60.903 61.111 0.00 0.00 0.00 5.36
3101 8801 3.409605 AAACCAACGACCGGCCACT 62.410 57.895 0.00 0.00 0.00 4.00
3102 8802 2.042404 AAACCAACGACCGGCCACTA 62.042 55.000 0.00 0.00 0.00 2.74
3103 8803 2.042404 AACCAACGACCGGCCACTAA 62.042 55.000 0.00 0.00 0.00 2.24
3104 8804 2.030958 CCAACGACCGGCCACTAAC 61.031 63.158 0.00 0.00 0.00 2.34
3105 8805 2.030958 CAACGACCGGCCACTAACC 61.031 63.158 0.00 0.00 0.00 2.85
3107 8807 2.125673 CGACCGGCCACTAACCAG 60.126 66.667 0.00 0.00 0.00 4.00
3108 8808 2.436115 GACCGGCCACTAACCAGC 60.436 66.667 0.00 0.00 0.00 4.85
3112 8812 0.743345 CCGGCCACTAACCAGCTAAC 60.743 60.000 2.24 0.00 0.00 2.34
3114 8814 1.479323 CGGCCACTAACCAGCTAACTA 59.521 52.381 2.24 0.00 0.00 2.24
3115 8815 2.737679 CGGCCACTAACCAGCTAACTAC 60.738 54.545 2.24 0.00 0.00 2.73
3116 8816 2.235402 GGCCACTAACCAGCTAACTACA 59.765 50.000 0.00 0.00 0.00 2.74
3117 8817 3.118371 GGCCACTAACCAGCTAACTACAT 60.118 47.826 0.00 0.00 0.00 2.29
3118 8818 3.871594 GCCACTAACCAGCTAACTACATG 59.128 47.826 0.00 0.00 0.00 3.21
3119 8819 3.871594 CCACTAACCAGCTAACTACATGC 59.128 47.826 0.00 0.00 0.00 4.06
3121 8821 5.118990 CACTAACCAGCTAACTACATGCAT 58.881 41.667 0.00 0.00 0.00 3.96
3122 8822 5.007039 CACTAACCAGCTAACTACATGCATG 59.993 44.000 25.09 25.09 0.00 4.06
3123 8823 2.292267 ACCAGCTAACTACATGCATGC 58.708 47.619 26.53 11.82 0.00 4.06
3125 8825 2.684374 CCAGCTAACTACATGCATGCAA 59.316 45.455 26.68 13.91 0.00 4.08
3126 8826 3.488047 CCAGCTAACTACATGCATGCAAC 60.488 47.826 26.68 9.16 0.00 4.17
3128 8828 4.571984 CAGCTAACTACATGCATGCAACTA 59.428 41.667 26.68 15.23 0.00 2.24
3130 8830 5.065218 AGCTAACTACATGCATGCAACTAAC 59.935 40.000 26.68 11.59 0.00 2.34
3131 8831 5.065218 GCTAACTACATGCATGCAACTAACT 59.935 40.000 26.68 10.91 0.00 2.24
3132 8832 4.952262 ACTACATGCATGCAACTAACTG 57.048 40.909 26.68 19.24 0.00 3.16
3133 8833 4.578871 ACTACATGCATGCAACTAACTGA 58.421 39.130 26.68 6.58 0.00 3.41
3134 8834 5.188434 ACTACATGCATGCAACTAACTGAT 58.812 37.500 26.68 10.12 0.00 2.90
3135 8835 4.627611 ACATGCATGCAACTAACTGATC 57.372 40.909 26.68 0.00 0.00 2.92
3136 8836 4.011698 ACATGCATGCAACTAACTGATCA 58.988 39.130 26.68 0.00 0.00 2.92
3137 8837 4.643334 ACATGCATGCAACTAACTGATCAT 59.357 37.500 26.68 0.00 0.00 2.45
3138 8838 4.888038 TGCATGCAACTAACTGATCATC 57.112 40.909 20.30 0.00 0.00 2.92
3140 8840 3.847467 GCATGCAACTAACTGATCATCGC 60.847 47.826 14.21 0.00 0.00 4.58
3141 8841 2.279741 TGCAACTAACTGATCATCGCC 58.720 47.619 0.00 0.00 0.00 5.54
3143 8843 1.860950 CAACTAACTGATCATCGCCGG 59.139 52.381 0.00 0.00 0.00 6.13
3145 8845 1.338337 ACTAACTGATCATCGCCGGAG 59.662 52.381 5.05 0.00 0.00 4.63
3159 8859 2.431683 GGAGGTGCTGCAGTGGAA 59.568 61.111 16.64 0.00 0.00 3.53
3162 8862 2.591715 GGTGCTGCAGTGGAACGT 60.592 61.111 16.64 0.00 45.86 3.99
3163 8863 2.607892 GGTGCTGCAGTGGAACGTC 61.608 63.158 16.64 0.00 45.86 4.34
3164 8864 2.280797 TGCTGCAGTGGAACGTCC 60.281 61.111 16.64 0.00 45.86 4.79
3165 8865 3.050275 GCTGCAGTGGAACGTCCC 61.050 66.667 16.64 0.00 45.86 4.46
3166 8866 2.743718 CTGCAGTGGAACGTCCCT 59.256 61.111 5.25 0.00 45.86 4.20
3167 8867 1.071471 CTGCAGTGGAACGTCCCTT 59.929 57.895 5.25 0.00 45.86 3.95
3168 8868 0.951040 CTGCAGTGGAACGTCCCTTC 60.951 60.000 5.25 0.00 45.86 3.46
3169 8869 1.371558 GCAGTGGAACGTCCCTTCT 59.628 57.895 0.00 0.00 45.86 2.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 1.885593 ATTTGGGGCCAGGGTTAGGG 61.886 60.000 4.39 0.00 0.00 3.53
27 28 6.648192 CATAAAACTATCAAATTTGGGGCCA 58.352 36.000 17.90 0.00 0.00 5.36
56 57 9.543783 AAAACCAATTTAAAATTACCGCAGTAA 57.456 25.926 0.00 0.00 42.54 2.24
58 59 7.711339 TGAAAACCAATTTAAAATTACCGCAGT 59.289 29.630 0.00 0.00 0.00 4.40
122 123 2.484062 GCACAGTTGGCAGCACAGT 61.484 57.895 3.63 0.00 0.00 3.55
125 126 2.333938 CAGCACAGTTGGCAGCAC 59.666 61.111 3.63 0.00 0.00 4.40
126 127 3.598715 GCAGCACAGTTGGCAGCA 61.599 61.111 3.63 0.00 42.52 4.41
127 128 4.353437 GGCAGCACAGTTGGCAGC 62.353 66.667 0.00 0.00 42.28 5.25
130 131 1.080298 GATTGGCAGCACAGTTGGC 60.080 57.895 0.00 0.59 41.12 4.52
131 132 0.963962 AAGATTGGCAGCACAGTTGG 59.036 50.000 0.00 0.00 0.00 3.77
132 133 2.806608 AAAGATTGGCAGCACAGTTG 57.193 45.000 0.00 0.00 0.00 3.16
230 2004 5.046591 AGTCAAAGCACTGTATAAGGCTGTA 60.047 40.000 0.00 0.00 34.04 2.74
251 2025 1.443872 CACCCGTACGCTGTCAGTC 60.444 63.158 10.49 0.00 0.00 3.51
253 2027 2.809601 GCACCCGTACGCTGTCAG 60.810 66.667 10.49 0.00 0.00 3.51
277 2051 0.599728 GAGTCCTGAGCCGATGCATC 60.600 60.000 17.10 17.10 41.13 3.91
279 2053 1.543944 TTGAGTCCTGAGCCGATGCA 61.544 55.000 0.00 0.00 41.13 3.96
280 2054 1.086634 GTTGAGTCCTGAGCCGATGC 61.087 60.000 0.00 0.00 37.95 3.91
281 2055 0.247460 TGTTGAGTCCTGAGCCGATG 59.753 55.000 0.00 0.00 0.00 3.84
282 2056 1.134580 CATGTTGAGTCCTGAGCCGAT 60.135 52.381 0.00 0.00 0.00 4.18
283 2057 0.247460 CATGTTGAGTCCTGAGCCGA 59.753 55.000 0.00 0.00 0.00 5.54
284 2058 0.036952 ACATGTTGAGTCCTGAGCCG 60.037 55.000 0.00 0.00 0.00 5.52
286 2060 1.446907 CCACATGTTGAGTCCTGAGC 58.553 55.000 0.00 0.00 0.00 4.26
306 2080 1.586564 CGGACCATCGAAGTCTCGC 60.587 63.158 15.96 2.51 45.04 5.03
316 2090 0.729116 CACATGCAAGACGGACCATC 59.271 55.000 0.00 0.00 0.00 3.51
320 2094 0.517316 GGAACACATGCAAGACGGAC 59.483 55.000 0.00 0.00 0.00 4.79
321 2095 0.605319 GGGAACACATGCAAGACGGA 60.605 55.000 0.00 0.00 0.00 4.69
323 2097 0.950836 TTGGGAACACATGCAAGACG 59.049 50.000 0.00 0.00 42.67 4.18
325 2099 5.782047 CTTAATTTGGGAACACATGCAAGA 58.218 37.500 0.00 0.00 42.67 3.02
326 2100 4.389687 GCTTAATTTGGGAACACATGCAAG 59.610 41.667 0.00 0.00 42.67 4.01
327 2101 4.202295 TGCTTAATTTGGGAACACATGCAA 60.202 37.500 0.00 0.00 42.67 4.08
328 2102 3.323115 TGCTTAATTTGGGAACACATGCA 59.677 39.130 0.00 0.00 42.67 3.96
330 2104 4.244862 GGTGCTTAATTTGGGAACACATG 58.755 43.478 0.00 0.00 42.67 3.21
331 2105 3.900601 TGGTGCTTAATTTGGGAACACAT 59.099 39.130 0.00 0.00 42.67 3.21
334 2108 4.155709 TCATGGTGCTTAATTTGGGAACA 58.844 39.130 0.00 0.00 39.83 3.18
335 2109 4.220602 ACTCATGGTGCTTAATTTGGGAAC 59.779 41.667 0.00 0.00 0.00 3.62
336 2110 4.415596 ACTCATGGTGCTTAATTTGGGAA 58.584 39.130 0.00 0.00 0.00 3.97
337 2111 4.046286 ACTCATGGTGCTTAATTTGGGA 57.954 40.909 0.00 0.00 0.00 4.37
339 2113 4.704540 TGGTACTCATGGTGCTTAATTTGG 59.295 41.667 0.00 0.00 0.00 3.28
341 2115 5.570320 ACTGGTACTCATGGTGCTTAATTT 58.430 37.500 0.00 0.00 0.00 1.82
342 2116 5.179452 ACTGGTACTCATGGTGCTTAATT 57.821 39.130 0.00 0.00 0.00 1.40
343 2117 4.844349 ACTGGTACTCATGGTGCTTAAT 57.156 40.909 0.00 0.00 0.00 1.40
345 2119 4.350245 AGTACTGGTACTCATGGTGCTTA 58.650 43.478 7.51 0.00 42.30 3.09
346 2120 3.173965 AGTACTGGTACTCATGGTGCTT 58.826 45.455 7.51 0.00 42.30 3.91
347 2121 2.821437 AGTACTGGTACTCATGGTGCT 58.179 47.619 7.51 0.00 42.30 4.40
348 2122 4.939052 ATAGTACTGGTACTCATGGTGC 57.061 45.455 15.50 0.00 44.58 5.01
349 2123 7.094162 CCAGATATAGTACTGGTACTCATGGTG 60.094 44.444 15.50 9.82 44.58 4.17
351 2125 7.397892 CCAGATATAGTACTGGTACTCATGG 57.602 44.000 15.50 13.08 44.58 3.66
418 2322 9.415544 GACGTACTAATCAACCTTCTTTTCTAA 57.584 33.333 0.00 0.00 0.00 2.10
419 2323 8.031277 GGACGTACTAATCAACCTTCTTTTCTA 58.969 37.037 0.00 0.00 0.00 2.10
420 2324 6.872547 GGACGTACTAATCAACCTTCTTTTCT 59.127 38.462 0.00 0.00 0.00 2.52
421 2325 6.647895 TGGACGTACTAATCAACCTTCTTTTC 59.352 38.462 0.00 0.00 0.00 2.29
422 2326 6.527423 TGGACGTACTAATCAACCTTCTTTT 58.473 36.000 0.00 0.00 0.00 2.27
423 2327 6.105397 TGGACGTACTAATCAACCTTCTTT 57.895 37.500 0.00 0.00 0.00 2.52
424 2328 5.733620 TGGACGTACTAATCAACCTTCTT 57.266 39.130 0.00 0.00 0.00 2.52
425 2329 5.733620 TTGGACGTACTAATCAACCTTCT 57.266 39.130 0.00 0.00 0.00 2.85
469 2373 2.086869 ACCGAGCATTGAAGTCCATTG 58.913 47.619 0.00 0.00 0.00 2.82
487 2391 1.542492 TCACCGTACTCCTTCAGACC 58.458 55.000 0.00 0.00 0.00 3.85
537 6016 3.367087 CCATCTTAACGAACGGTCAGACT 60.367 47.826 0.00 0.00 0.00 3.24
541 6020 2.094390 CCTCCATCTTAACGAACGGTCA 60.094 50.000 0.00 0.00 0.00 4.02
544 6023 1.287425 GCCTCCATCTTAACGAACGG 58.713 55.000 0.00 0.00 0.00 4.44
548 6027 1.480954 GTCTGGCCTCCATCTTAACGA 59.519 52.381 3.32 0.00 30.82 3.85
549 6028 1.802880 CGTCTGGCCTCCATCTTAACG 60.803 57.143 3.32 0.00 30.82 3.18
556 6035 1.002134 CCAAACGTCTGGCCTCCAT 60.002 57.895 3.32 0.00 30.82 3.41
557 6036 2.429930 CCAAACGTCTGGCCTCCA 59.570 61.111 3.32 0.00 0.00 3.86
575 6054 1.463056 CAACTTTTGGCTGCATGCATG 59.537 47.619 22.97 22.70 45.15 4.06
657 6136 1.882989 GCAGCAGGAGAGGTCGAAGT 61.883 60.000 0.00 0.00 0.00 3.01
808 6307 2.477825 CGTCAATGGTAGATGCAGAGG 58.522 52.381 0.00 0.00 0.00 3.69
897 6444 7.542130 CCAACTTAAATCAATAAGACAAGCACC 59.458 37.037 1.38 0.00 36.57 5.01
939 6488 5.414765 CCTAAGAGTAAAACCAACATCCACC 59.585 44.000 0.00 0.00 0.00 4.61
955 6504 3.055747 GGTAAGCTTCAGTGCCTAAGAGT 60.056 47.826 0.00 0.00 0.00 3.24
1024 6573 3.414193 TAGGTCCTCGAGCCGGGA 61.414 66.667 6.99 0.00 0.00 5.14
1129 6678 2.247358 GAATTTGGGTGTGGATGTGGT 58.753 47.619 0.00 0.00 0.00 4.16
1140 6689 2.299867 GTGGTCAAGCATGAATTTGGGT 59.700 45.455 0.00 0.00 37.30 4.51
1185 6734 1.152839 CCCCCGGCCGTCAATAATT 60.153 57.895 26.12 0.00 0.00 1.40
1241 6790 0.106519 AGGCCAGAGCTGTTGTTTGT 60.107 50.000 5.01 0.00 39.73 2.83
1282 6831 3.432186 CCATGAAGGCAAATCTCGGAGTA 60.432 47.826 4.69 0.00 0.00 2.59
1296 6845 1.452651 ATCGCAGGCACCATGAAGG 60.453 57.895 0.00 0.00 45.67 3.46
1323 6872 1.297689 GTGCAGCCAGGAGATGACA 59.702 57.895 0.00 0.00 0.00 3.58
1359 6908 2.151202 GCATGTGTATGGATAACCGGG 58.849 52.381 6.32 0.00 39.42 5.73
1371 6920 1.064240 TCGGGTAGGAGAGCATGTGTA 60.064 52.381 0.00 0.00 0.00 2.90
1374 6923 2.814023 CTCGGGTAGGAGAGCATGT 58.186 57.895 0.00 0.00 36.08 3.21
1390 6939 1.028868 GGGTGCTCAACATGAGGCTC 61.029 60.000 7.79 7.79 44.43 4.70
1408 6957 4.207165 CCAATTATGGTGTTGTAGAGGGG 58.793 47.826 0.00 0.00 42.18 4.79
1680 7229 1.304052 TCCCCCAATTTCAGTGGCG 60.304 57.895 0.00 0.00 34.56 5.69
1702 7251 5.984233 TCGAACACAATAATATCTGTGCC 57.016 39.130 10.79 4.86 45.56 5.01
1725 7274 2.166459 CTGGAATGACTCGGCTTCTGTA 59.834 50.000 0.00 0.00 0.00 2.74
1745 7294 3.207354 CGGGACTACGCATCCACT 58.793 61.111 2.94 0.00 38.06 4.00
1755 7304 3.065306 CACAGTTGGGCGGGACTA 58.935 61.111 0.00 0.00 0.00 2.59
1858 7420 2.700371 TCCAGACATAATCCTGCATCGT 59.300 45.455 0.00 0.00 0.00 3.73
1872 7434 2.036733 CCGGTAGTTGAAAGTCCAGACA 59.963 50.000 0.00 0.00 0.00 3.41
1887 7465 0.448990 TCGACACGTCAATCCGGTAG 59.551 55.000 0.00 0.00 0.00 3.18
1969 7548 2.290832 TGAGCCATTGCACTGTGGAATA 60.291 45.455 24.07 8.50 36.23 1.75
2055 7638 6.906157 AAGAAGTTTCCATCAATGTCACAT 57.094 33.333 0.00 0.00 0.00 3.21
2107 7691 6.147581 GGCAGTGATTAAGCATCATACAATG 58.852 40.000 0.00 0.00 44.11 2.82
2133 7721 7.284034 GGAATTGGAATAATGCTCTCTTTGAGA 59.716 37.037 0.00 0.00 45.39 3.27
2161 7751 3.565764 TTGCATCTCAATCTAGTGGGG 57.434 47.619 0.00 0.00 0.00 4.96
2215 7805 5.624159 AGGAATCTTGAACATTCAGACACA 58.376 37.500 0.00 0.00 38.61 3.72
2239 7829 1.894756 TCCAACGGGGAAGCAAACG 60.895 57.895 0.00 0.00 44.80 3.60
2312 7907 5.355596 AGCACTAGATACTGAAAGCACATC 58.644 41.667 0.00 0.00 37.60 3.06
2424 8020 7.402054 TGGACAATAACTCCACTAACATGATT 58.598 34.615 0.00 0.00 32.52 2.57
2498 8094 3.822192 CGGCCGAGTCCACGATCA 61.822 66.667 24.07 0.00 35.09 2.92
2499 8095 4.570663 CCGGCCGAGTCCACGATC 62.571 72.222 30.73 0.00 35.09 3.69
2521 8117 1.078709 CCATGACGTAGCACCAACTG 58.921 55.000 0.00 0.00 0.00 3.16
2525 8121 0.817654 CTCTCCATGACGTAGCACCA 59.182 55.000 0.00 0.00 0.00 4.17
2532 8128 0.818296 GCTACCACTCTCCATGACGT 59.182 55.000 0.00 0.00 0.00 4.34
2554 8245 0.249489 CCGGTGCACTCATACCTAGC 60.249 60.000 17.98 0.00 34.77 3.42
2560 8251 4.757019 TTTTATACCCGGTGCACTCATA 57.243 40.909 17.98 5.03 0.00 2.15
2583 8274 2.197465 GATCAGTACAAAGGGGAGGGT 58.803 52.381 0.00 0.00 0.00 4.34
2610 8301 3.660111 GTGGCTCGGCAACACACC 61.660 66.667 0.00 0.00 31.84 4.16
2648 8340 1.567537 CACGCCGACGAACAACATT 59.432 52.632 0.00 0.00 43.93 2.71
2650 8342 2.962786 CCACGCCGACGAACAACA 60.963 61.111 0.00 0.00 43.93 3.33
2698 8390 4.036262 GCACACTGAACACAAGGTATTTCA 59.964 41.667 0.00 0.00 0.00 2.69
2703 8395 2.484770 GGAGCACACTGAACACAAGGTA 60.485 50.000 0.00 0.00 0.00 3.08
2712 8404 3.206150 GTGAAAGAAGGAGCACACTGAA 58.794 45.455 0.00 0.00 0.00 3.02
2713 8405 2.485479 GGTGAAAGAAGGAGCACACTGA 60.485 50.000 0.00 0.00 33.09 3.41
2730 8422 0.976641 ATTCGCTCAGACCAAGGTGA 59.023 50.000 0.00 0.00 0.00 4.02
2737 8429 1.474478 TCTGTCTCATTCGCTCAGACC 59.526 52.381 0.00 0.00 36.49 3.85
2742 8434 1.838913 GCTCTCTGTCTCATTCGCTC 58.161 55.000 0.00 0.00 0.00 5.03
2744 8436 1.478622 GCGCTCTCTGTCTCATTCGC 61.479 60.000 0.00 0.00 34.61 4.70
2745 8437 0.100325 AGCGCTCTCTGTCTCATTCG 59.900 55.000 2.64 0.00 0.00 3.34
2748 8440 0.667993 GCTAGCGCTCTCTGTCTCAT 59.332 55.000 16.34 0.00 0.00 2.90
2754 8446 1.313772 TTCCTAGCTAGCGCTCTCTG 58.686 55.000 16.34 4.00 45.15 3.35
2761 8461 2.656085 CTGAACGATTCCTAGCTAGCG 58.344 52.381 15.74 15.02 0.00 4.26
2772 8472 5.323900 CAATAACACGAATGCTGAACGATT 58.676 37.500 0.00 0.00 0.00 3.34
2773 8473 4.727734 GCAATAACACGAATGCTGAACGAT 60.728 41.667 0.00 0.00 35.93 3.73
2775 8475 2.840176 GCAATAACACGAATGCTGAACG 59.160 45.455 0.00 0.00 35.93 3.95
2781 8481 2.420022 AGGTGAGCAATAACACGAATGC 59.580 45.455 0.00 0.00 37.82 3.56
2783 8483 5.670485 TCATAGGTGAGCAATAACACGAAT 58.330 37.500 0.00 0.00 37.82 3.34
2791 8491 4.343814 TCCGACAATCATAGGTGAGCAATA 59.656 41.667 0.00 0.00 37.87 1.90
2792 8492 3.134623 TCCGACAATCATAGGTGAGCAAT 59.865 43.478 0.00 0.00 37.87 3.56
2793 8493 2.499693 TCCGACAATCATAGGTGAGCAA 59.500 45.455 0.00 0.00 37.87 3.91
2794 8494 2.107366 TCCGACAATCATAGGTGAGCA 58.893 47.619 0.00 0.00 37.87 4.26
2796 8496 3.458189 GGTTCCGACAATCATAGGTGAG 58.542 50.000 0.00 0.00 37.87 3.51
2797 8497 2.159156 CGGTTCCGACAATCATAGGTGA 60.159 50.000 5.19 0.00 39.04 4.02
2798 8498 2.159156 TCGGTTCCGACAATCATAGGTG 60.159 50.000 10.00 0.00 33.26 4.00
2799 8499 2.100916 CTCGGTTCCGACAATCATAGGT 59.899 50.000 10.00 0.00 34.59 3.08
2800 8500 2.545952 CCTCGGTTCCGACAATCATAGG 60.546 54.545 10.00 3.94 34.59 2.57
2801 8501 2.361119 TCCTCGGTTCCGACAATCATAG 59.639 50.000 10.00 0.00 34.59 2.23
2803 8503 1.191535 TCCTCGGTTCCGACAATCAT 58.808 50.000 10.00 0.00 34.59 2.45
2804 8504 1.136305 GATCCTCGGTTCCGACAATCA 59.864 52.381 10.00 0.00 34.59 2.57
2805 8505 1.854227 GATCCTCGGTTCCGACAATC 58.146 55.000 10.00 11.39 34.59 2.67
2806 8506 0.102481 CGATCCTCGGTTCCGACAAT 59.898 55.000 10.00 6.59 36.00 2.71
2807 8507 0.961857 TCGATCCTCGGTTCCGACAA 60.962 55.000 10.00 1.89 40.88 3.18
2809 8509 1.063811 GTCGATCCTCGGTTCCGAC 59.936 63.158 10.00 0.00 40.88 4.79
2810 8510 2.466982 CGTCGATCCTCGGTTCCGA 61.467 63.158 13.34 13.34 40.88 4.55
2812 8512 0.525029 GTTCGTCGATCCTCGGTTCC 60.525 60.000 0.00 0.00 40.88 3.62
2814 8514 0.599558 TTGTTCGTCGATCCTCGGTT 59.400 50.000 0.00 0.00 40.88 4.44
2815 8515 0.815734 ATTGTTCGTCGATCCTCGGT 59.184 50.000 0.00 0.00 40.88 4.69
2820 8520 3.250744 TCTTGTGATTGTTCGTCGATCC 58.749 45.455 0.00 0.00 36.40 3.36
2821 8521 4.903638 TTCTTGTGATTGTTCGTCGATC 57.096 40.909 0.00 0.00 37.44 3.69
2822 8522 5.444613 CGAATTCTTGTGATTGTTCGTCGAT 60.445 40.000 3.52 0.00 35.18 3.59
2823 8523 4.143410 CGAATTCTTGTGATTGTTCGTCGA 60.143 41.667 3.52 0.00 35.18 4.20
2824 8524 4.074949 CGAATTCTTGTGATTGTTCGTCG 58.925 43.478 3.52 0.00 35.18 5.12
2827 8527 4.388773 TCCTCGAATTCTTGTGATTGTTCG 59.611 41.667 3.52 0.00 39.60 3.95
2829 8529 5.409826 GTCTCCTCGAATTCTTGTGATTGTT 59.590 40.000 3.52 0.00 0.00 2.83
2830 8530 4.932200 GTCTCCTCGAATTCTTGTGATTGT 59.068 41.667 3.52 0.00 0.00 2.71
2831 8531 4.032217 CGTCTCCTCGAATTCTTGTGATTG 59.968 45.833 3.52 0.00 0.00 2.67
2832 8532 4.082190 TCGTCTCCTCGAATTCTTGTGATT 60.082 41.667 3.52 0.00 36.89 2.57
2834 8534 2.817844 TCGTCTCCTCGAATTCTTGTGA 59.182 45.455 3.52 0.00 36.89 3.58
2836 8536 4.457834 AATCGTCTCCTCGAATTCTTGT 57.542 40.909 3.52 0.00 42.99 3.16
2837 8537 5.554636 CAAAATCGTCTCCTCGAATTCTTG 58.445 41.667 3.52 0.00 42.99 3.02
2838 8538 4.093556 GCAAAATCGTCTCCTCGAATTCTT 59.906 41.667 3.52 0.00 42.99 2.52
2839 8539 3.619038 GCAAAATCGTCTCCTCGAATTCT 59.381 43.478 3.52 0.00 42.99 2.40
2840 8540 3.242446 GGCAAAATCGTCTCCTCGAATTC 60.242 47.826 0.00 0.00 42.99 2.17
2841 8541 2.678336 GGCAAAATCGTCTCCTCGAATT 59.322 45.455 0.00 0.00 42.99 2.17
2843 8543 1.722011 GGCAAAATCGTCTCCTCGAA 58.278 50.000 0.00 0.00 42.99 3.71
2846 8546 0.108329 TCCGGCAAAATCGTCTCCTC 60.108 55.000 0.00 0.00 0.00 3.71
2847 8547 0.391263 GTCCGGCAAAATCGTCTCCT 60.391 55.000 0.00 0.00 0.00 3.69
2849 8549 0.734942 TCGTCCGGCAAAATCGTCTC 60.735 55.000 0.00 0.00 0.00 3.36
2851 8551 1.563111 TATCGTCCGGCAAAATCGTC 58.437 50.000 0.00 0.00 0.00 4.20
2852 8552 2.012937 TTATCGTCCGGCAAAATCGT 57.987 45.000 0.00 0.00 0.00 3.73
2853 8553 2.700694 GTTTATCGTCCGGCAAAATCG 58.299 47.619 0.00 0.00 0.00 3.34
2854 8554 2.700694 CGTTTATCGTCCGGCAAAATC 58.299 47.619 0.00 0.00 34.52 2.17
2857 8557 0.671163 AGCGTTTATCGTCCGGCAAA 60.671 50.000 0.00 0.00 42.13 3.68
2858 8558 1.079681 AGCGTTTATCGTCCGGCAA 60.080 52.632 0.00 0.00 42.13 4.52
2859 8559 1.517694 GAGCGTTTATCGTCCGGCA 60.518 57.895 0.00 0.00 42.13 5.69
2860 8560 2.574222 CGAGCGTTTATCGTCCGGC 61.574 63.158 0.00 0.00 42.13 6.13
2861 8561 2.574222 GCGAGCGTTTATCGTCCGG 61.574 63.158 0.00 0.00 42.13 5.14
2862 8562 2.574222 GGCGAGCGTTTATCGTCCG 61.574 63.158 0.00 0.00 42.13 4.79
2863 8563 2.574222 CGGCGAGCGTTTATCGTCC 61.574 63.158 0.00 0.00 41.61 4.79
2864 8564 1.870901 ACGGCGAGCGTTTATCGTC 60.871 57.895 16.62 0.00 42.13 4.20
2865 8565 2.156446 CACGGCGAGCGTTTATCGT 61.156 57.895 16.62 0.00 42.13 3.73
2866 8566 1.870458 TCACGGCGAGCGTTTATCG 60.870 57.895 16.62 0.00 43.00 2.92
2867 8567 1.629504 GTCACGGCGAGCGTTTATC 59.370 57.895 16.62 0.00 0.00 1.75
2868 8568 2.156446 CGTCACGGCGAGCGTTTAT 61.156 57.895 16.62 0.00 0.00 1.40
2869 8569 2.801996 CGTCACGGCGAGCGTTTA 60.802 61.111 16.62 0.00 0.00 2.01
2906 8606 2.808181 TAGAAAAAGGCCCCGGCGTC 62.808 60.000 6.01 0.00 43.06 5.19
2907 8607 2.206182 ATAGAAAAAGGCCCCGGCGT 62.206 55.000 6.01 0.00 43.06 5.68
2908 8608 1.444917 GATAGAAAAAGGCCCCGGCG 61.445 60.000 0.00 0.00 43.06 6.46
2909 8609 0.106669 AGATAGAAAAAGGCCCCGGC 60.107 55.000 0.00 0.00 41.06 6.13
2910 8610 2.024414 CAAGATAGAAAAAGGCCCCGG 58.976 52.381 0.00 0.00 0.00 5.73
2911 8611 2.723273 ACAAGATAGAAAAAGGCCCCG 58.277 47.619 0.00 0.00 0.00 5.73
2912 8612 6.607600 AGAAATACAAGATAGAAAAAGGCCCC 59.392 38.462 0.00 0.00 0.00 5.80
2913 8613 7.646548 AGAAATACAAGATAGAAAAAGGCCC 57.353 36.000 0.00 0.00 0.00 5.80
2914 8614 8.191446 GGAAGAAATACAAGATAGAAAAAGGCC 58.809 37.037 0.00 0.00 0.00 5.19
2941 8641 2.121538 CGTCCTGGATGAGCCGAGA 61.122 63.158 10.50 0.00 40.66 4.04
2942 8642 1.667154 TTCGTCCTGGATGAGCCGAG 61.667 60.000 17.53 0.00 40.66 4.63
2944 8644 1.227089 CTTCGTCCTGGATGAGCCG 60.227 63.158 17.53 7.91 40.66 5.52
2945 8645 0.460987 CACTTCGTCCTGGATGAGCC 60.461 60.000 17.53 0.00 37.10 4.70
2946 8646 0.532573 TCACTTCGTCCTGGATGAGC 59.467 55.000 17.53 0.00 0.00 4.26
2947 8647 2.428530 TGATCACTTCGTCCTGGATGAG 59.571 50.000 17.53 14.05 0.00 2.90
2949 8649 2.094026 TGTGATCACTTCGTCCTGGATG 60.094 50.000 25.55 9.73 0.00 3.51
2950 8650 2.179427 TGTGATCACTTCGTCCTGGAT 58.821 47.619 25.55 0.00 0.00 3.41
2951 8651 1.627864 TGTGATCACTTCGTCCTGGA 58.372 50.000 25.55 0.00 0.00 3.86
2952 8652 2.274437 CATGTGATCACTTCGTCCTGG 58.726 52.381 25.55 3.37 0.00 4.45
2953 8653 2.274437 CCATGTGATCACTTCGTCCTG 58.726 52.381 25.55 11.35 0.00 3.86
2954 8654 1.406069 GCCATGTGATCACTTCGTCCT 60.406 52.381 25.55 0.53 0.00 3.85
2955 8655 1.009829 GCCATGTGATCACTTCGTCC 58.990 55.000 25.55 6.71 0.00 4.79
2956 8656 0.647410 CGCCATGTGATCACTTCGTC 59.353 55.000 25.55 10.60 0.00 4.20
2958 8658 1.078709 AACGCCATGTGATCACTTCG 58.921 50.000 25.55 22.07 0.00 3.79
2961 8661 4.574828 GGTATAAAACGCCATGTGATCACT 59.425 41.667 25.55 9.43 0.00 3.41
2962 8662 4.261031 GGGTATAAAACGCCATGTGATCAC 60.261 45.833 19.27 19.27 35.04 3.06
2963 8663 3.880490 GGGTATAAAACGCCATGTGATCA 59.120 43.478 0.00 0.00 35.04 2.92
2964 8664 3.880490 TGGGTATAAAACGCCATGTGATC 59.120 43.478 0.00 0.00 40.25 2.92
2965 8665 3.630312 GTGGGTATAAAACGCCATGTGAT 59.370 43.478 0.00 0.00 40.25 3.06
2966 8666 3.011119 GTGGGTATAAAACGCCATGTGA 58.989 45.455 0.00 0.00 40.25 3.58
2967 8667 2.223157 CGTGGGTATAAAACGCCATGTG 60.223 50.000 0.00 0.00 40.25 3.21
2968 8668 2.011222 CGTGGGTATAAAACGCCATGT 58.989 47.619 0.00 0.00 40.25 3.21
2969 8669 1.332375 CCGTGGGTATAAAACGCCATG 59.668 52.381 0.00 0.00 40.25 3.66
2970 8670 1.670791 CCGTGGGTATAAAACGCCAT 58.329 50.000 0.00 0.00 40.25 4.40
2971 8671 1.025647 GCCGTGGGTATAAAACGCCA 61.026 55.000 0.00 0.00 40.25 5.69
2972 8672 1.723273 GCCGTGGGTATAAAACGCC 59.277 57.895 0.00 0.00 40.25 5.68
2975 8675 0.745486 AGGCGCCGTGGGTATAAAAC 60.745 55.000 23.20 0.00 0.00 2.43
2977 8677 0.390124 CTAGGCGCCGTGGGTATAAA 59.610 55.000 23.20 0.00 0.00 1.40
2978 8678 2.043625 CTAGGCGCCGTGGGTATAA 58.956 57.895 23.20 0.00 0.00 0.98
2979 8679 2.567497 GCTAGGCGCCGTGGGTATA 61.567 63.158 23.20 4.81 0.00 1.47
2984 8684 4.760047 AGTTGCTAGGCGCCGTGG 62.760 66.667 23.20 16.06 38.05 4.94
3015 8715 1.083806 ATGCGTGTATGTGCGGTGAG 61.084 55.000 0.00 0.00 0.00 3.51
3016 8716 0.173708 TATGCGTGTATGTGCGGTGA 59.826 50.000 0.00 0.00 0.00 4.02
3018 8718 1.286501 CTTATGCGTGTATGTGCGGT 58.713 50.000 0.00 0.00 0.00 5.68
3019 8719 0.042188 GCTTATGCGTGTATGTGCGG 60.042 55.000 0.00 0.00 0.00 5.69
3020 8720 0.930310 AGCTTATGCGTGTATGTGCG 59.070 50.000 0.00 0.00 45.42 5.34
3021 8721 1.261619 GGAGCTTATGCGTGTATGTGC 59.738 52.381 0.00 0.00 45.42 4.57
3022 8722 2.541346 CAGGAGCTTATGCGTGTATGTG 59.459 50.000 0.00 0.00 45.42 3.21
3023 8723 2.483714 CCAGGAGCTTATGCGTGTATGT 60.484 50.000 0.00 0.00 45.42 2.29
3025 8725 2.036475 CTCCAGGAGCTTATGCGTGTAT 59.964 50.000 2.60 0.00 45.42 2.29
3026 8726 1.409064 CTCCAGGAGCTTATGCGTGTA 59.591 52.381 2.60 0.00 45.42 2.90
3029 8729 0.461961 GTCTCCAGGAGCTTATGCGT 59.538 55.000 12.26 0.00 45.42 5.24
3030 8730 0.249657 GGTCTCCAGGAGCTTATGCG 60.250 60.000 12.26 0.00 45.42 4.73
3031 8731 0.107643 GGGTCTCCAGGAGCTTATGC 59.892 60.000 12.26 0.00 41.70 3.14
3032 8732 0.390860 CGGGTCTCCAGGAGCTTATG 59.609 60.000 12.26 0.00 41.70 1.90
3033 8733 0.760945 CCGGGTCTCCAGGAGCTTAT 60.761 60.000 12.26 0.00 41.70 1.73
3035 8735 2.685380 CCGGGTCTCCAGGAGCTT 60.685 66.667 12.26 0.00 41.70 3.74
3038 8738 4.787280 AGGCCGGGTCTCCAGGAG 62.787 72.222 10.70 10.70 0.00 3.69
3044 8744 3.851128 GTAGGCAGGCCGGGTCTC 61.851 72.222 7.90 0.00 41.95 3.36
3047 8747 4.764771 TACGTAGGCAGGCCGGGT 62.765 66.667 2.18 6.89 41.95 5.28
3048 8748 4.217159 GTACGTAGGCAGGCCGGG 62.217 72.222 2.18 0.00 41.95 5.73
3051 8751 4.137872 TGCGTACGTAGGCAGGCC 62.138 66.667 32.52 10.24 41.52 5.19
3052 8752 1.996786 TAGTGCGTACGTAGGCAGGC 61.997 60.000 35.59 26.31 46.17 4.85
3053 8753 0.452987 TTAGTGCGTACGTAGGCAGG 59.547 55.000 35.59 7.27 46.17 4.85
3054 8754 2.382519 GATTAGTGCGTACGTAGGCAG 58.617 52.381 35.59 12.11 46.17 4.85
3055 8755 1.066002 GGATTAGTGCGTACGTAGGCA 59.934 52.381 32.52 32.52 43.80 4.75
3056 8756 1.066002 TGGATTAGTGCGTACGTAGGC 59.934 52.381 28.46 28.46 37.58 3.93
3057 8757 2.857489 GCTGGATTAGTGCGTACGTAGG 60.857 54.545 17.90 10.86 0.00 3.18
3059 8759 2.019249 AGCTGGATTAGTGCGTACGTA 58.981 47.619 17.90 10.06 0.00 3.57
3060 8760 0.815734 AGCTGGATTAGTGCGTACGT 59.184 50.000 17.90 0.00 0.00 3.57
3062 8762 3.777478 TGTTAGCTGGATTAGTGCGTAC 58.223 45.455 0.00 0.00 0.00 3.67
3064 8764 3.328382 TTGTTAGCTGGATTAGTGCGT 57.672 42.857 0.00 0.00 0.00 5.24
3065 8765 3.181510 GGTTTGTTAGCTGGATTAGTGCG 60.182 47.826 0.00 0.00 0.00 5.34
3066 8766 3.756434 TGGTTTGTTAGCTGGATTAGTGC 59.244 43.478 0.00 0.00 0.00 4.40
3067 8767 5.616866 CGTTGGTTTGTTAGCTGGATTAGTG 60.617 44.000 0.00 0.00 0.00 2.74
3070 8770 4.453136 GTCGTTGGTTTGTTAGCTGGATTA 59.547 41.667 0.00 0.00 0.00 1.75
3071 8771 3.252458 GTCGTTGGTTTGTTAGCTGGATT 59.748 43.478 0.00 0.00 0.00 3.01
3072 8772 2.812011 GTCGTTGGTTTGTTAGCTGGAT 59.188 45.455 0.00 0.00 0.00 3.41
3073 8773 2.215196 GTCGTTGGTTTGTTAGCTGGA 58.785 47.619 0.00 0.00 0.00 3.86
3074 8774 1.265905 GGTCGTTGGTTTGTTAGCTGG 59.734 52.381 0.00 0.00 0.00 4.85
3076 8776 1.223187 CGGTCGTTGGTTTGTTAGCT 58.777 50.000 0.00 0.00 0.00 3.32
3077 8777 0.236449 CCGGTCGTTGGTTTGTTAGC 59.764 55.000 0.00 0.00 0.00 3.09
3078 8778 0.236449 GCCGGTCGTTGGTTTGTTAG 59.764 55.000 1.90 0.00 0.00 2.34
3079 8779 1.165284 GGCCGGTCGTTGGTTTGTTA 61.165 55.000 1.90 0.00 0.00 2.41
3084 8784 2.042404 TTAGTGGCCGGTCGTTGGTT 62.042 55.000 0.00 0.00 0.00 3.67
3085 8785 2.509651 TTAGTGGCCGGTCGTTGGT 61.510 57.895 0.00 0.00 0.00 3.67
3086 8786 2.030958 GTTAGTGGCCGGTCGTTGG 61.031 63.158 0.00 0.00 0.00 3.77
3088 8788 2.344872 GGTTAGTGGCCGGTCGTT 59.655 61.111 0.00 0.00 0.00 3.85
3089 8789 2.918802 TGGTTAGTGGCCGGTCGT 60.919 61.111 0.00 0.00 0.00 4.34
3090 8790 2.125673 CTGGTTAGTGGCCGGTCG 60.126 66.667 0.00 0.00 0.00 4.79
3092 8792 1.196104 TTAGCTGGTTAGTGGCCGGT 61.196 55.000 1.90 0.00 34.91 5.28
3093 8793 0.743345 GTTAGCTGGTTAGTGGCCGG 60.743 60.000 0.00 0.00 35.53 6.13
3094 8794 0.249398 AGTTAGCTGGTTAGTGGCCG 59.751 55.000 0.00 0.00 0.00 6.13
3096 8796 3.604875 TGTAGTTAGCTGGTTAGTGGC 57.395 47.619 0.00 0.00 0.00 5.01
3098 8798 4.503910 TGCATGTAGTTAGCTGGTTAGTG 58.496 43.478 0.00 0.00 0.00 2.74
3099 8799 4.819105 TGCATGTAGTTAGCTGGTTAGT 57.181 40.909 0.00 0.00 0.00 2.24
3101 8801 3.876914 GCATGCATGTAGTTAGCTGGTTA 59.123 43.478 26.79 0.00 0.00 2.85
3102 8802 2.684881 GCATGCATGTAGTTAGCTGGTT 59.315 45.455 26.79 0.00 0.00 3.67
3103 8803 2.292267 GCATGCATGTAGTTAGCTGGT 58.708 47.619 26.79 0.00 0.00 4.00
3104 8804 2.291365 TGCATGCATGTAGTTAGCTGG 58.709 47.619 26.79 0.00 0.00 4.85
3105 8805 3.376234 AGTTGCATGCATGTAGTTAGCTG 59.624 43.478 26.79 0.05 0.00 4.24
3107 8807 5.065218 AGTTAGTTGCATGCATGTAGTTAGC 59.935 40.000 26.79 18.37 0.00 3.09
3108 8808 6.313658 TCAGTTAGTTGCATGCATGTAGTTAG 59.686 38.462 26.79 8.80 0.00 2.34
3112 8812 5.295045 TGATCAGTTAGTTGCATGCATGTAG 59.705 40.000 26.79 9.75 0.00 2.74
3114 8814 4.011698 TGATCAGTTAGTTGCATGCATGT 58.988 39.130 26.79 14.25 0.00 3.21
3115 8815 4.625972 TGATCAGTTAGTTGCATGCATG 57.374 40.909 23.37 22.70 0.00 4.06
3116 8816 4.024302 CGATGATCAGTTAGTTGCATGCAT 60.024 41.667 23.37 10.46 0.00 3.96
3117 8817 3.310501 CGATGATCAGTTAGTTGCATGCA 59.689 43.478 18.46 18.46 0.00 3.96
3118 8818 3.847467 GCGATGATCAGTTAGTTGCATGC 60.847 47.826 11.82 11.82 0.00 4.06
3119 8819 3.303593 GGCGATGATCAGTTAGTTGCATG 60.304 47.826 0.09 0.00 0.00 4.06
3121 8821 2.279741 GGCGATGATCAGTTAGTTGCA 58.720 47.619 0.09 0.00 0.00 4.08
3122 8822 1.258982 CGGCGATGATCAGTTAGTTGC 59.741 52.381 0.00 0.00 0.00 4.17
3123 8823 1.860950 CCGGCGATGATCAGTTAGTTG 59.139 52.381 9.30 0.00 0.00 3.16
3125 8825 1.338337 CTCCGGCGATGATCAGTTAGT 59.662 52.381 9.30 0.00 0.00 2.24
3126 8826 1.336332 CCTCCGGCGATGATCAGTTAG 60.336 57.143 9.30 0.00 0.00 2.34
3128 8828 1.330655 ACCTCCGGCGATGATCAGTT 61.331 55.000 9.30 0.00 0.00 3.16
3130 8830 1.300465 CACCTCCGGCGATGATCAG 60.300 63.158 9.30 0.00 0.00 2.90
3131 8831 2.814604 CACCTCCGGCGATGATCA 59.185 61.111 9.30 0.00 0.00 2.92
3132 8832 2.663188 GCACCTCCGGCGATGATC 60.663 66.667 9.30 0.00 0.00 2.92
3133 8833 3.157252 AGCACCTCCGGCGATGAT 61.157 61.111 9.30 0.00 36.08 2.45
3134 8834 4.147449 CAGCACCTCCGGCGATGA 62.147 66.667 9.30 0.00 36.08 2.92
3141 8841 3.535629 TTCCACTGCAGCACCTCCG 62.536 63.158 15.27 0.00 0.00 4.63
3143 8843 2.320587 CGTTCCACTGCAGCACCTC 61.321 63.158 15.27 1.06 0.00 3.85
3145 8845 2.591715 ACGTTCCACTGCAGCACC 60.592 61.111 15.27 0.00 0.00 5.01
3146 8846 2.607892 GGACGTTCCACTGCAGCAC 61.608 63.158 15.27 4.73 36.28 4.40
3147 8847 2.280797 GGACGTTCCACTGCAGCA 60.281 61.111 15.27 0.00 36.28 4.41
3148 8848 3.050275 GGGACGTTCCACTGCAGC 61.050 66.667 15.27 0.00 38.64 5.25
3149 8849 0.951040 GAAGGGACGTTCCACTGCAG 60.951 60.000 17.22 13.48 38.64 4.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.