Multiple sequence alignment - TraesCS6B01G014200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G014200 chr6B 100.000 2501 0 0 1 2501 8774830 8772330 0.000000e+00 4619.0
1 TraesCS6B01G014200 chr6B 82.838 606 64 14 353 952 8780949 8780378 7.980000e-140 507.0
2 TraesCS6B01G014200 chr6B 98.113 53 1 0 2449 2501 634940937 634940885 2.650000e-15 93.5
3 TraesCS6B01G014200 chr6B 89.706 68 3 3 2437 2501 82606470 82606536 1.590000e-12 84.2
4 TraesCS6B01G014200 chr6D 89.090 1879 125 19 350 2199 3931995 3933822 0.000000e+00 2261.0
5 TraesCS6B01G014200 chr6D 90.132 304 28 2 1 304 3931690 3931991 6.480000e-106 394.0
6 TraesCS6B01G014200 chr6D 84.146 328 39 5 544 870 3918869 3919184 3.130000e-79 305.0
7 TraesCS6B01G014200 chr6A 88.213 263 27 2 1750 2009 3661464 3661203 6.720000e-81 311.0
8 TraesCS6B01G014200 chr6A 78.827 392 48 15 634 1014 3662623 3662256 5.380000e-57 231.0
9 TraesCS6B01G014200 chr6A 88.021 192 11 3 1532 1715 3661636 3661449 1.510000e-52 217.0
10 TraesCS6B01G014200 chr5B 95.082 61 0 3 2443 2501 506337250 506337309 2.650000e-15 93.5
11 TraesCS6B01G014200 chr5B 96.364 55 2 0 2447 2501 38837395 38837449 9.530000e-15 91.6
12 TraesCS6B01G014200 chr5B 96.429 56 1 1 2447 2501 353010989 353011044 9.530000e-15 91.6
13 TraesCS6B01G014200 chr2B 96.364 55 2 0 2447 2501 107378764 107378818 9.530000e-15 91.6
14 TraesCS6B01G014200 chr3B 92.308 65 1 2 2441 2501 214798279 214798343 3.430000e-14 89.8
15 TraesCS6B01G014200 chr5A 91.045 67 2 3 2438 2501 407213677 407213612 1.230000e-13 87.9
16 TraesCS6B01G014200 chr3A 93.333 60 3 1 2442 2501 466154936 466154878 1.230000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G014200 chr6B 8772330 8774830 2500 True 4619.0 4619 100.000000 1 2501 1 chr6B.!!$R1 2500
1 TraesCS6B01G014200 chr6B 8780378 8780949 571 True 507.0 507 82.838000 353 952 1 chr6B.!!$R2 599
2 TraesCS6B01G014200 chr6D 3931690 3933822 2132 False 1327.5 2261 89.611000 1 2199 2 chr6D.!!$F2 2198
3 TraesCS6B01G014200 chr6A 3661203 3662623 1420 True 253.0 311 85.020333 634 2009 3 chr6A.!!$R1 1375

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
334 335 0.693049 AGCCACCCGTCATCTTTTCT 59.307 50.000 0.0 0.0 0.0 2.52 F
335 336 1.073923 AGCCACCCGTCATCTTTTCTT 59.926 47.619 0.0 0.0 0.0 2.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1344 1484 0.037877 TCTCTTCGACTTCCCGTCCT 59.962 55.0 0.0 0.00 39.56 3.85 R
2037 2253 0.374758 GATGCATGTGTACAGGTGCG 59.625 55.0 21.0 1.79 40.34 5.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 1.364626 GACTCCATGTCAGCTTGCCG 61.365 60.000 0.00 0.00 44.73 5.69
47 48 1.268794 CCGAAACATGGCACGACAAAA 60.269 47.619 0.00 0.00 0.00 2.44
121 122 6.174760 ACTCGTCTTCTTGTACTCTCTATGT 58.825 40.000 0.00 0.00 0.00 2.29
127 128 8.736244 GTCTTCTTGTACTCTCTATGTTCTTCT 58.264 37.037 0.00 0.00 0.00 2.85
137 138 7.015682 ACTCTCTATGTTCTTCTTTCAGTTGGA 59.984 37.037 0.00 0.00 0.00 3.53
163 164 1.170290 TGGCTTGTCGAGTCGTCAGA 61.170 55.000 13.12 3.85 30.55 3.27
168 169 3.565516 CTTGTCGAGTCGTCAGATGAAA 58.434 45.455 13.12 0.00 0.00 2.69
169 170 3.203161 TGTCGAGTCGTCAGATGAAAG 57.797 47.619 13.12 0.00 0.00 2.62
177 178 4.281182 AGTCGTCAGATGAAAGTACAGGTT 59.719 41.667 0.00 0.00 0.00 3.50
191 192 2.266055 GGTTCTCCTGGACTGCCG 59.734 66.667 0.00 0.00 36.79 5.69
224 225 7.228108 ACATCCACATATTAGCATGCTATATGC 59.772 37.037 31.31 9.65 44.85 3.14
242 243 3.354948 TGCAGAAACACATAGCCTCAT 57.645 42.857 0.00 0.00 0.00 2.90
247 248 4.081406 AGAAACACATAGCCTCATGCAAA 58.919 39.130 0.00 0.00 44.83 3.68
248 249 4.523943 AGAAACACATAGCCTCATGCAAAA 59.476 37.500 0.00 0.00 44.83 2.44
256 257 2.961062 AGCCTCATGCAAAAACTCAACT 59.039 40.909 0.00 0.00 44.83 3.16
257 258 3.054878 GCCTCATGCAAAAACTCAACTG 58.945 45.455 0.00 0.00 40.77 3.16
275 276 2.802816 ACTGAGTTGTCGCTTGTTCATC 59.197 45.455 0.00 0.00 0.00 2.92
288 289 3.159213 TGTTCATCTTCATGTTGGCCT 57.841 42.857 3.32 0.00 0.00 5.19
293 294 2.804986 TCTTCATGTTGGCCTGCATA 57.195 45.000 3.32 0.00 0.00 3.14
298 299 4.822685 TCATGTTGGCCTGCATATTTTT 57.177 36.364 3.32 0.00 0.00 1.94
304 305 2.902486 TGGCCTGCATATTTTTGACCAA 59.098 40.909 3.32 0.00 0.00 3.67
306 307 4.202398 TGGCCTGCATATTTTTGACCAAAA 60.202 37.500 3.32 4.00 38.76 2.44
319 320 7.531857 TTTTGACCAAAAACATAGATAGCCA 57.468 32.000 5.53 0.00 37.35 4.75
320 321 6.509418 TTGACCAAAAACATAGATAGCCAC 57.491 37.500 0.00 0.00 0.00 5.01
321 322 4.947388 TGACCAAAAACATAGATAGCCACC 59.053 41.667 0.00 0.00 0.00 4.61
322 323 4.278310 ACCAAAAACATAGATAGCCACCC 58.722 43.478 0.00 0.00 0.00 4.61
323 324 3.315191 CCAAAAACATAGATAGCCACCCG 59.685 47.826 0.00 0.00 0.00 5.28
324 325 3.926058 AAAACATAGATAGCCACCCGT 57.074 42.857 0.00 0.00 0.00 5.28
325 326 3.470645 AAACATAGATAGCCACCCGTC 57.529 47.619 0.00 0.00 0.00 4.79
326 327 2.082140 ACATAGATAGCCACCCGTCA 57.918 50.000 0.00 0.00 0.00 4.35
327 328 2.609747 ACATAGATAGCCACCCGTCAT 58.390 47.619 0.00 0.00 0.00 3.06
328 329 2.563179 ACATAGATAGCCACCCGTCATC 59.437 50.000 0.00 0.00 0.00 2.92
329 330 2.677542 TAGATAGCCACCCGTCATCT 57.322 50.000 0.00 0.00 0.00 2.90
330 331 1.794714 AGATAGCCACCCGTCATCTT 58.205 50.000 0.00 0.00 0.00 2.40
331 332 2.119495 AGATAGCCACCCGTCATCTTT 58.881 47.619 0.00 0.00 0.00 2.52
332 333 2.505819 AGATAGCCACCCGTCATCTTTT 59.494 45.455 0.00 0.00 0.00 2.27
333 334 2.396590 TAGCCACCCGTCATCTTTTC 57.603 50.000 0.00 0.00 0.00 2.29
334 335 0.693049 AGCCACCCGTCATCTTTTCT 59.307 50.000 0.00 0.00 0.00 2.52
335 336 1.073923 AGCCACCCGTCATCTTTTCTT 59.926 47.619 0.00 0.00 0.00 2.52
336 337 1.468914 GCCACCCGTCATCTTTTCTTC 59.531 52.381 0.00 0.00 0.00 2.87
337 338 2.778299 CCACCCGTCATCTTTTCTTCA 58.222 47.619 0.00 0.00 0.00 3.02
338 339 2.484264 CCACCCGTCATCTTTTCTTCAC 59.516 50.000 0.00 0.00 0.00 3.18
339 340 3.403038 CACCCGTCATCTTTTCTTCACT 58.597 45.455 0.00 0.00 0.00 3.41
340 341 3.433615 CACCCGTCATCTTTTCTTCACTC 59.566 47.826 0.00 0.00 0.00 3.51
341 342 3.071023 ACCCGTCATCTTTTCTTCACTCA 59.929 43.478 0.00 0.00 0.00 3.41
342 343 3.433615 CCCGTCATCTTTTCTTCACTCAC 59.566 47.826 0.00 0.00 0.00 3.51
343 344 4.058124 CCGTCATCTTTTCTTCACTCACA 58.942 43.478 0.00 0.00 0.00 3.58
344 345 4.084328 CCGTCATCTTTTCTTCACTCACAC 60.084 45.833 0.00 0.00 0.00 3.82
345 346 4.747108 CGTCATCTTTTCTTCACTCACACT 59.253 41.667 0.00 0.00 0.00 3.55
346 347 5.920840 CGTCATCTTTTCTTCACTCACACTA 59.079 40.000 0.00 0.00 0.00 2.74
347 348 6.587990 CGTCATCTTTTCTTCACTCACACTAT 59.412 38.462 0.00 0.00 0.00 2.12
348 349 7.411264 CGTCATCTTTTCTTCACTCACACTATG 60.411 40.741 0.00 0.00 0.00 2.23
349 350 7.600375 GTCATCTTTTCTTCACTCACACTATGA 59.400 37.037 0.00 0.00 35.45 2.15
350 351 7.600375 TCATCTTTTCTTCACTCACACTATGAC 59.400 37.037 0.00 0.00 32.37 3.06
351 352 5.920840 TCTTTTCTTCACTCACACTATGACG 59.079 40.000 0.00 0.00 32.37 4.35
371 372 2.093711 CGGTCAATGATACACCTCACCA 60.094 50.000 0.00 0.00 0.00 4.17
383 384 1.197430 CCTCACCAGACAAGCCCTCT 61.197 60.000 0.00 0.00 0.00 3.69
456 457 7.094506 TGTCAGTGACATTACTTACTGTACGAT 60.095 37.037 22.06 0.00 40.91 3.73
460 461 9.731819 AGTGACATTACTTACTGTACGATAATG 57.268 33.333 16.09 16.09 36.52 1.90
489 494 6.035435 GTCTAGCATCAACACAACTCACTATG 59.965 42.308 0.00 0.00 0.00 2.23
525 530 4.623932 AAGTCACTCCTTGCATCACTAA 57.376 40.909 0.00 0.00 0.00 2.24
535 540 5.412594 TCCTTGCATCACTAAGTGTTCATTC 59.587 40.000 0.00 0.00 34.79 2.67
542 547 7.361542 GCATCACTAAGTGTTCATTCAACTGAT 60.362 37.037 0.00 0.00 35.79 2.90
548 553 9.604626 CTAAGTGTTCATTCAACTGATCTTTTC 57.395 33.333 0.00 0.00 35.79 2.29
549 554 7.814264 AGTGTTCATTCAACTGATCTTTTCT 57.186 32.000 0.00 0.00 35.79 2.52
559 564 5.984695 ACTGATCTTTTCTTTTTAGGGGC 57.015 39.130 0.00 0.00 0.00 5.80
586 596 2.593346 TGCACGGAAAAAGCACAAAT 57.407 40.000 0.00 0.00 32.55 2.32
596 606 8.544597 ACGGAAAAAGCACAAATAATAAACAAC 58.455 29.630 0.00 0.00 0.00 3.32
597 607 8.543774 CGGAAAAAGCACAAATAATAAACAACA 58.456 29.630 0.00 0.00 0.00 3.33
681 691 7.587037 AACAGTTCTTCTTCCAATGAAATCA 57.413 32.000 0.00 0.00 0.00 2.57
753 763 2.996631 AGGGCAAGTTGATGTCTGATC 58.003 47.619 7.16 0.00 0.00 2.92
754 764 2.019984 GGGCAAGTTGATGTCTGATCC 58.980 52.381 7.16 0.00 0.00 3.36
755 765 2.618816 GGGCAAGTTGATGTCTGATCCA 60.619 50.000 7.16 0.00 0.00 3.41
756 766 3.285484 GGCAAGTTGATGTCTGATCCAT 58.715 45.455 7.16 0.00 0.00 3.41
757 767 3.314635 GGCAAGTTGATGTCTGATCCATC 59.685 47.826 7.16 4.09 39.32 3.51
758 768 4.197750 GCAAGTTGATGTCTGATCCATCT 58.802 43.478 7.16 0.00 39.54 2.90
759 769 4.035324 GCAAGTTGATGTCTGATCCATCTG 59.965 45.833 7.16 3.73 39.54 2.90
825 835 2.672651 CTTGCGTGGCCCATGTGA 60.673 61.111 4.57 0.00 0.00 3.58
922 940 6.464465 GCCTCTTTATATATGTGTGTGTCCCT 60.464 42.308 0.00 0.00 0.00 4.20
942 960 2.240667 CTGTCTCCTCAACCCATCCATT 59.759 50.000 0.00 0.00 0.00 3.16
1014 1044 2.907042 GCTAGCTATGGGTATGGGTTCT 59.093 50.000 7.70 0.00 0.00 3.01
1047 1077 2.465299 CGCCACCGTTGTTGTGTCA 61.465 57.895 0.00 0.00 31.71 3.58
1213 1347 2.751688 GGTGCCGGAGTGGGTTAA 59.248 61.111 5.05 0.00 38.63 2.01
1249 1383 3.412408 GGGGAGGACTTGGGCTCC 61.412 72.222 0.00 0.00 35.38 4.70
1294 1434 3.520569 GAGCAAGAGGTAGAAGCAAGAG 58.479 50.000 0.00 0.00 0.00 2.85
1295 1435 2.235898 AGCAAGAGGTAGAAGCAAGAGG 59.764 50.000 0.00 0.00 0.00 3.69
1296 1436 2.234908 GCAAGAGGTAGAAGCAAGAGGA 59.765 50.000 0.00 0.00 0.00 3.71
1297 1437 3.678529 GCAAGAGGTAGAAGCAAGAGGAG 60.679 52.174 0.00 0.00 0.00 3.69
1298 1438 2.745968 AGAGGTAGAAGCAAGAGGAGG 58.254 52.381 0.00 0.00 0.00 4.30
1299 1439 2.313342 AGAGGTAGAAGCAAGAGGAGGA 59.687 50.000 0.00 0.00 0.00 3.71
1300 1440 2.693074 GAGGTAGAAGCAAGAGGAGGAG 59.307 54.545 0.00 0.00 0.00 3.69
1301 1441 1.760029 GGTAGAAGCAAGAGGAGGAGG 59.240 57.143 0.00 0.00 0.00 4.30
1302 1442 2.624557 GGTAGAAGCAAGAGGAGGAGGA 60.625 54.545 0.00 0.00 0.00 3.71
1419 1559 3.329929 GGTTACGACCCAGAATTCTGT 57.670 47.619 29.03 15.32 42.27 3.41
1478 1618 1.580845 CTCCAAAAGTGCGAGGCAGG 61.581 60.000 0.00 0.00 40.08 4.85
1515 1655 2.108970 GGGTGATAAGTCGGTCTCCTT 58.891 52.381 0.00 0.00 0.00 3.36
1521 1661 0.976641 AAGTCGGTCTCCTTGCATCA 59.023 50.000 0.00 0.00 0.00 3.07
1526 1666 0.321653 GGTCTCCTTGCATCAACGGT 60.322 55.000 0.00 0.00 0.00 4.83
1599 1803 9.512435 CAAGATGTTAATTTGGTCATCAATCTC 57.488 33.333 0.00 0.00 39.06 2.75
1617 1821 3.441163 TCTCGTACGTTGTTATCATGGC 58.559 45.455 16.05 0.00 0.00 4.40
1635 1839 3.674997 TGGCTGTTGAGTACTTCCATTC 58.325 45.455 0.00 0.00 0.00 2.67
1694 1906 0.746659 GCCACACTTTTGAAGCCACT 59.253 50.000 0.00 0.00 0.00 4.00
1695 1907 1.536709 GCCACACTTTTGAAGCCACTG 60.537 52.381 0.00 0.00 0.00 3.66
1697 1909 2.948979 CCACACTTTTGAAGCCACTGTA 59.051 45.455 0.00 0.00 0.00 2.74
1731 1943 8.434589 TCCATTTTGAAATAAAAGGAGGTGAT 57.565 30.769 0.00 0.00 31.84 3.06
1765 1977 3.668656 GCAGGTATCTGTTTTGCGTTTTC 59.331 43.478 4.60 0.00 42.78 2.29
1787 1999 2.995258 GTTGTGCTGCCAATATGTTTGG 59.005 45.455 0.00 5.17 42.37 3.28
1805 2017 0.809636 GGCAACTGGTTTTGTGGCAC 60.810 55.000 11.55 11.55 36.15 5.01
1834 2046 7.377766 TGTAAGGTGATACAAAAGAAGATGC 57.622 36.000 0.00 0.00 33.02 3.91
1849 2061 5.118990 AGAAGATGCTTAAGCGCTGATAAA 58.881 37.500 21.97 2.33 45.83 1.40
1856 2068 5.154222 GCTTAAGCGCTGATAAAACAACTT 58.846 37.500 12.58 0.00 0.00 2.66
1864 2076 8.293867 AGCGCTGATAAAACAACTTAATTTGTA 58.706 29.630 10.39 0.00 38.82 2.41
1899 2111 3.419915 CATGCATGAAAGCGTAAGACAC 58.580 45.455 22.59 0.00 43.02 3.67
1917 2129 6.927294 AGACACAGGAGTAAACTTCTTTTG 57.073 37.500 0.00 0.00 26.44 2.44
1950 2166 5.772825 TGGAAGCAAGCAAATGGATATAC 57.227 39.130 0.00 0.00 0.00 1.47
1951 2167 4.275689 TGGAAGCAAGCAAATGGATATACG 59.724 41.667 0.00 0.00 0.00 3.06
1981 2197 2.281345 GGGGATGCATCTGCGAGG 60.281 66.667 25.28 0.00 45.83 4.63
2028 2244 2.439409 GCATGGCAGTGCATATATCCA 58.561 47.619 18.61 3.78 44.43 3.41
2029 2245 2.821378 GCATGGCAGTGCATATATCCAA 59.179 45.455 18.61 0.00 44.43 3.53
2031 2247 2.493035 TGGCAGTGCATATATCCAACG 58.507 47.619 18.61 0.00 0.00 4.10
2032 2248 1.197721 GGCAGTGCATATATCCAACGC 59.802 52.381 18.61 0.00 0.00 4.84
2033 2249 1.197721 GCAGTGCATATATCCAACGCC 59.802 52.381 11.09 0.00 0.00 5.68
2034 2250 2.493035 CAGTGCATATATCCAACGCCA 58.507 47.619 0.00 0.00 0.00 5.69
2035 2251 3.076621 CAGTGCATATATCCAACGCCAT 58.923 45.455 0.00 0.00 0.00 4.40
2036 2252 3.076621 AGTGCATATATCCAACGCCATG 58.923 45.455 0.00 0.00 0.00 3.66
2037 2253 1.811965 TGCATATATCCAACGCCATGC 59.188 47.619 0.00 0.00 39.32 4.06
2048 2264 2.745884 GCCATGCGCACCTGTACA 60.746 61.111 14.90 0.00 37.47 2.90
2054 2270 2.324330 GCGCACCTGTACACATGCA 61.324 57.895 20.90 0.00 37.97 3.96
2089 2305 5.014858 TGTAGGACACGTAGAAGATTTCCT 58.985 41.667 0.00 0.00 36.05 3.36
2109 2333 4.907269 TCCTACATAGCCATTGATCCAGAA 59.093 41.667 0.00 0.00 0.00 3.02
2112 2336 6.820656 CCTACATAGCCATTGATCCAGAATAC 59.179 42.308 0.00 0.00 0.00 1.89
2137 2361 3.852578 ACTTTAACATCCACCCATCCTCT 59.147 43.478 0.00 0.00 0.00 3.69
2159 2383 5.891551 TCTCGCTGTAGCCATATATCCATAA 59.108 40.000 0.00 0.00 37.91 1.90
2162 2386 6.098266 TCGCTGTAGCCATATATCCATAATGT 59.902 38.462 0.00 0.00 37.91 2.71
2163 2387 6.763135 CGCTGTAGCCATATATCCATAATGTT 59.237 38.462 0.00 0.00 37.91 2.71
2164 2388 7.926018 CGCTGTAGCCATATATCCATAATGTTA 59.074 37.037 0.00 0.00 37.91 2.41
2172 2396 9.507329 CCATATATCCATAATGTTATACCAGCC 57.493 37.037 0.00 0.00 0.00 4.85
2184 2408 8.588290 ATGTTATACCAGCCTTGATGTAAAAA 57.412 30.769 0.00 0.00 0.00 1.94
2185 2409 8.588290 TGTTATACCAGCCTTGATGTAAAAAT 57.412 30.769 0.00 0.00 0.00 1.82
2192 2416 6.250819 CAGCCTTGATGTAAAAATGACGTAG 58.749 40.000 0.00 0.00 0.00 3.51
2195 2419 5.354234 CCTTGATGTAAAAATGACGTAGGCT 59.646 40.000 0.00 0.00 0.00 4.58
2196 2420 6.417191 TTGATGTAAAAATGACGTAGGCTC 57.583 37.500 0.00 0.00 0.00 4.70
2197 2421 5.483811 TGATGTAAAAATGACGTAGGCTCA 58.516 37.500 0.00 0.00 0.00 4.26
2198 2422 5.580691 TGATGTAAAAATGACGTAGGCTCAG 59.419 40.000 0.00 0.00 0.00 3.35
2199 2423 4.890088 TGTAAAAATGACGTAGGCTCAGT 58.110 39.130 0.00 0.00 0.00 3.41
2200 2424 4.927425 TGTAAAAATGACGTAGGCTCAGTC 59.073 41.667 13.36 13.36 35.61 3.51
2201 2425 3.678056 AAAATGACGTAGGCTCAGTCA 57.322 42.857 21.70 21.70 46.99 3.41
2204 2428 2.941453 TGACGTAGGCTCAGTCATTC 57.059 50.000 17.46 0.00 39.63 2.67
2205 2429 1.476891 TGACGTAGGCTCAGTCATTCC 59.523 52.381 17.46 0.00 39.63 3.01
2206 2430 1.476891 GACGTAGGCTCAGTCATTCCA 59.523 52.381 14.82 0.00 35.19 3.53
2207 2431 1.478510 ACGTAGGCTCAGTCATTCCAG 59.521 52.381 0.00 0.00 0.00 3.86
2208 2432 1.478510 CGTAGGCTCAGTCATTCCAGT 59.521 52.381 0.00 0.00 0.00 4.00
2209 2433 2.688446 CGTAGGCTCAGTCATTCCAGTA 59.312 50.000 0.00 0.00 0.00 2.74
2210 2434 3.243234 CGTAGGCTCAGTCATTCCAGTAG 60.243 52.174 0.00 0.00 0.00 2.57
2211 2435 1.484240 AGGCTCAGTCATTCCAGTAGC 59.516 52.381 0.00 0.00 0.00 3.58
2212 2436 1.484240 GGCTCAGTCATTCCAGTAGCT 59.516 52.381 0.00 0.00 0.00 3.32
2213 2437 2.695666 GGCTCAGTCATTCCAGTAGCTA 59.304 50.000 0.00 0.00 0.00 3.32
2214 2438 3.323403 GGCTCAGTCATTCCAGTAGCTAT 59.677 47.826 0.00 0.00 0.00 2.97
2215 2439 4.524714 GGCTCAGTCATTCCAGTAGCTATA 59.475 45.833 0.00 0.00 0.00 1.31
2216 2440 5.011125 GGCTCAGTCATTCCAGTAGCTATAA 59.989 44.000 0.00 0.00 0.00 0.98
2217 2441 6.295575 GGCTCAGTCATTCCAGTAGCTATAAT 60.296 42.308 0.00 0.00 0.00 1.28
2218 2442 7.158021 GCTCAGTCATTCCAGTAGCTATAATT 58.842 38.462 0.00 0.00 0.00 1.40
2219 2443 7.659390 GCTCAGTCATTCCAGTAGCTATAATTT 59.341 37.037 0.00 0.00 0.00 1.82
2220 2444 8.893219 TCAGTCATTCCAGTAGCTATAATTTG 57.107 34.615 0.00 0.00 0.00 2.32
2221 2445 8.704668 TCAGTCATTCCAGTAGCTATAATTTGA 58.295 33.333 0.00 0.00 0.00 2.69
2222 2446 8.768955 CAGTCATTCCAGTAGCTATAATTTGAC 58.231 37.037 0.00 7.08 0.00 3.18
2223 2447 8.486210 AGTCATTCCAGTAGCTATAATTTGACA 58.514 33.333 19.08 0.00 32.98 3.58
2224 2448 9.277783 GTCATTCCAGTAGCTATAATTTGACAT 57.722 33.333 15.13 0.00 31.38 3.06
2254 2478 9.661563 ACTTATATTCGTTGGTAAAATCTGTCA 57.338 29.630 0.00 0.00 0.00 3.58
2262 2486 9.476202 TCGTTGGTAAAATCTGTCATATAGATG 57.524 33.333 0.00 0.00 35.20 2.90
2263 2487 8.223769 CGTTGGTAAAATCTGTCATATAGATGC 58.776 37.037 0.00 0.00 35.20 3.91
2264 2488 7.889589 TGGTAAAATCTGTCATATAGATGCG 57.110 36.000 0.00 0.00 35.20 4.73
2265 2489 7.666623 TGGTAAAATCTGTCATATAGATGCGA 58.333 34.615 0.00 0.00 35.20 5.10
2266 2490 7.598869 TGGTAAAATCTGTCATATAGATGCGAC 59.401 37.037 0.00 0.00 35.20 5.19
2267 2491 7.598869 GGTAAAATCTGTCATATAGATGCGACA 59.401 37.037 0.00 0.00 35.20 4.35
2268 2492 8.978539 GTAAAATCTGTCATATAGATGCGACAA 58.021 33.333 0.00 0.00 35.20 3.18
2269 2493 8.437360 AAAATCTGTCATATAGATGCGACAAA 57.563 30.769 0.00 0.00 35.20 2.83
2270 2494 8.437360 AAATCTGTCATATAGATGCGACAAAA 57.563 30.769 0.00 0.00 35.20 2.44
2271 2495 8.437360 AATCTGTCATATAGATGCGACAAAAA 57.563 30.769 0.00 0.00 35.20 1.94
2310 2534 9.857957 TTACGTATGTATGTATGAAAGAACACA 57.142 29.630 0.00 0.00 0.00 3.72
2311 2535 8.181487 ACGTATGTATGTATGAAAGAACACAC 57.819 34.615 0.00 0.00 0.00 3.82
2312 2536 8.033038 ACGTATGTATGTATGAAAGAACACACT 58.967 33.333 0.00 0.00 0.00 3.55
2313 2537 8.869897 CGTATGTATGTATGAAAGAACACACTT 58.130 33.333 0.00 0.00 0.00 3.16
2324 2548 5.767816 AAGAACACACTTTCATAACCCAC 57.232 39.130 0.00 0.00 0.00 4.61
2325 2549 4.787551 AGAACACACTTTCATAACCCACA 58.212 39.130 0.00 0.00 0.00 4.17
2326 2550 5.197451 AGAACACACTTTCATAACCCACAA 58.803 37.500 0.00 0.00 0.00 3.33
2327 2551 5.654650 AGAACACACTTTCATAACCCACAAA 59.345 36.000 0.00 0.00 0.00 2.83
2328 2552 5.923733 ACACACTTTCATAACCCACAAAA 57.076 34.783 0.00 0.00 0.00 2.44
2329 2553 5.901552 ACACACTTTCATAACCCACAAAAG 58.098 37.500 0.00 0.00 34.05 2.27
2330 2554 5.654650 ACACACTTTCATAACCCACAAAAGA 59.345 36.000 0.00 0.00 32.59 2.52
2331 2555 6.153680 ACACACTTTCATAACCCACAAAAGAA 59.846 34.615 0.00 0.00 32.59 2.52
2332 2556 7.038659 CACACTTTCATAACCCACAAAAGAAA 58.961 34.615 0.00 0.00 32.59 2.52
2333 2557 7.222611 CACACTTTCATAACCCACAAAAGAAAG 59.777 37.037 0.00 0.00 43.51 2.62
2334 2558 7.123547 ACACTTTCATAACCCACAAAAGAAAGA 59.876 33.333 16.15 0.00 41.61 2.52
2335 2559 7.978975 CACTTTCATAACCCACAAAAGAAAGAA 59.021 33.333 16.15 0.00 41.61 2.52
2336 2560 7.979537 ACTTTCATAACCCACAAAAGAAAGAAC 59.020 33.333 16.15 0.00 41.61 3.01
2337 2561 7.411486 TTCATAACCCACAAAAGAAAGAACA 57.589 32.000 0.00 0.00 0.00 3.18
2338 2562 7.595819 TCATAACCCACAAAAGAAAGAACAT 57.404 32.000 0.00 0.00 0.00 2.71
2339 2563 7.432869 TCATAACCCACAAAAGAAAGAACATG 58.567 34.615 0.00 0.00 0.00 3.21
2340 2564 4.058721 ACCCACAAAAGAAAGAACATGC 57.941 40.909 0.00 0.00 0.00 4.06
2341 2565 3.706086 ACCCACAAAAGAAAGAACATGCT 59.294 39.130 0.00 0.00 0.00 3.79
2342 2566 4.162131 ACCCACAAAAGAAAGAACATGCTT 59.838 37.500 0.00 0.00 0.00 3.91
2343 2567 5.118286 CCCACAAAAGAAAGAACATGCTTT 58.882 37.500 0.00 0.00 40.59 3.51
2344 2568 5.585844 CCCACAAAAGAAAGAACATGCTTTT 59.414 36.000 0.00 0.00 40.16 2.27
2345 2569 6.760770 CCCACAAAAGAAAGAACATGCTTTTA 59.239 34.615 0.00 0.00 38.19 1.52
2346 2570 7.442062 CCCACAAAAGAAAGAACATGCTTTTAT 59.558 33.333 0.00 0.00 38.19 1.40
2347 2571 9.474920 CCACAAAAGAAAGAACATGCTTTTATA 57.525 29.630 0.00 0.00 38.19 0.98
2357 2581 8.986477 AGAACATGCTTTTATAAACATGAACC 57.014 30.769 24.64 16.21 39.22 3.62
2358 2582 8.584157 AGAACATGCTTTTATAAACATGAACCA 58.416 29.630 24.64 6.82 39.22 3.67
2359 2583 9.202273 GAACATGCTTTTATAAACATGAACCAA 57.798 29.630 24.64 0.00 39.22 3.67
2360 2584 9.553064 AACATGCTTTTATAAACATGAACCAAA 57.447 25.926 24.64 0.00 39.22 3.28
2361 2585 8.987890 ACATGCTTTTATAAACATGAACCAAAC 58.012 29.630 24.64 0.00 39.22 2.93
2362 2586 9.206870 CATGCTTTTATAAACATGAACCAAACT 57.793 29.630 17.70 0.00 39.22 2.66
2372 2596 6.422776 ACATGAACCAAACTAAATAGCTCG 57.577 37.500 0.00 0.00 0.00 5.03
2373 2597 5.938125 ACATGAACCAAACTAAATAGCTCGT 59.062 36.000 0.00 0.00 0.00 4.18
2374 2598 6.092259 ACATGAACCAAACTAAATAGCTCGTC 59.908 38.462 0.00 0.00 0.00 4.20
2375 2599 5.543714 TGAACCAAACTAAATAGCTCGTCA 58.456 37.500 0.00 0.00 0.00 4.35
2376 2600 5.992829 TGAACCAAACTAAATAGCTCGTCAA 59.007 36.000 0.00 0.00 0.00 3.18
2377 2601 6.147164 TGAACCAAACTAAATAGCTCGTCAAG 59.853 38.462 0.00 0.00 0.00 3.02
2378 2602 5.790593 ACCAAACTAAATAGCTCGTCAAGA 58.209 37.500 0.00 0.00 0.00 3.02
2379 2603 6.407202 ACCAAACTAAATAGCTCGTCAAGAT 58.593 36.000 0.00 0.00 0.00 2.40
2380 2604 6.313905 ACCAAACTAAATAGCTCGTCAAGATG 59.686 38.462 0.00 0.00 0.00 2.90
2381 2605 6.238211 CCAAACTAAATAGCTCGTCAAGATGG 60.238 42.308 0.00 0.00 0.00 3.51
2382 2606 5.854010 ACTAAATAGCTCGTCAAGATGGA 57.146 39.130 0.00 0.00 0.00 3.41
2383 2607 6.222038 ACTAAATAGCTCGTCAAGATGGAA 57.778 37.500 0.00 0.00 0.00 3.53
2384 2608 6.640518 ACTAAATAGCTCGTCAAGATGGAAA 58.359 36.000 0.00 0.00 0.00 3.13
2385 2609 7.275920 ACTAAATAGCTCGTCAAGATGGAAAT 58.724 34.615 0.00 0.00 0.00 2.17
2386 2610 6.610741 AAATAGCTCGTCAAGATGGAAATC 57.389 37.500 0.00 0.00 0.00 2.17
2387 2611 3.616956 AGCTCGTCAAGATGGAAATCA 57.383 42.857 0.00 0.00 0.00 2.57
2388 2612 3.942829 AGCTCGTCAAGATGGAAATCAA 58.057 40.909 0.00 0.00 0.00 2.57
2389 2613 4.326826 AGCTCGTCAAGATGGAAATCAAA 58.673 39.130 0.00 0.00 0.00 2.69
2390 2614 4.946157 AGCTCGTCAAGATGGAAATCAAAT 59.054 37.500 0.00 0.00 0.00 2.32
2391 2615 5.416952 AGCTCGTCAAGATGGAAATCAAATT 59.583 36.000 0.00 0.00 0.00 1.82
2392 2616 5.741040 GCTCGTCAAGATGGAAATCAAATTC 59.259 40.000 0.00 0.00 0.00 2.17
2393 2617 6.623549 GCTCGTCAAGATGGAAATCAAATTCA 60.624 38.462 0.00 0.00 0.00 2.57
2394 2618 7.213216 TCGTCAAGATGGAAATCAAATTCAA 57.787 32.000 0.00 0.00 0.00 2.69
2395 2619 7.307694 TCGTCAAGATGGAAATCAAATTCAAG 58.692 34.615 0.00 0.00 0.00 3.02
2396 2620 6.034256 CGTCAAGATGGAAATCAAATTCAAGC 59.966 38.462 0.00 0.00 0.00 4.01
2397 2621 6.034256 GTCAAGATGGAAATCAAATTCAAGCG 59.966 38.462 0.00 0.00 0.00 4.68
2398 2622 4.427312 AGATGGAAATCAAATTCAAGCGC 58.573 39.130 0.00 0.00 0.00 5.92
2399 2623 3.657015 TGGAAATCAAATTCAAGCGCA 57.343 38.095 11.47 0.00 0.00 6.09
2400 2624 3.316283 TGGAAATCAAATTCAAGCGCAC 58.684 40.909 11.47 0.00 0.00 5.34
2401 2625 3.243670 TGGAAATCAAATTCAAGCGCACA 60.244 39.130 11.47 0.00 0.00 4.57
2402 2626 3.928375 GGAAATCAAATTCAAGCGCACAT 59.072 39.130 11.47 0.00 0.00 3.21
2403 2627 4.201647 GGAAATCAAATTCAAGCGCACATG 60.202 41.667 11.47 5.77 0.00 3.21
2404 2628 3.581024 ATCAAATTCAAGCGCACATGT 57.419 38.095 11.47 0.00 0.00 3.21
2405 2629 3.367992 TCAAATTCAAGCGCACATGTT 57.632 38.095 11.47 0.00 0.00 2.71
2406 2630 3.715495 TCAAATTCAAGCGCACATGTTT 58.285 36.364 11.47 1.94 0.00 2.83
2407 2631 4.118410 TCAAATTCAAGCGCACATGTTTT 58.882 34.783 11.47 7.73 0.00 2.43
2408 2632 4.208873 TCAAATTCAAGCGCACATGTTTTC 59.791 37.500 11.47 0.00 0.00 2.29
2409 2633 3.648339 ATTCAAGCGCACATGTTTTCT 57.352 38.095 11.47 0.00 0.00 2.52
2410 2634 2.404265 TCAAGCGCACATGTTTTCTG 57.596 45.000 11.47 0.00 0.00 3.02
2411 2635 1.946081 TCAAGCGCACATGTTTTCTGA 59.054 42.857 11.47 0.00 0.00 3.27
2412 2636 2.553602 TCAAGCGCACATGTTTTCTGAT 59.446 40.909 11.47 0.00 0.00 2.90
2413 2637 3.004629 TCAAGCGCACATGTTTTCTGATT 59.995 39.130 11.47 0.00 0.00 2.57
2414 2638 3.648339 AGCGCACATGTTTTCTGATTT 57.352 38.095 11.47 0.00 0.00 2.17
2415 2639 3.311106 AGCGCACATGTTTTCTGATTTG 58.689 40.909 11.47 0.00 0.00 2.32
2416 2640 2.159934 GCGCACATGTTTTCTGATTTGC 60.160 45.455 0.30 0.00 0.00 3.68
2417 2641 3.311106 CGCACATGTTTTCTGATTTGCT 58.689 40.909 0.00 0.00 0.00 3.91
2418 2642 3.120616 CGCACATGTTTTCTGATTTGCTG 59.879 43.478 0.00 0.00 0.00 4.41
2419 2643 4.053295 GCACATGTTTTCTGATTTGCTGT 58.947 39.130 0.00 0.00 0.00 4.40
2420 2644 4.508861 GCACATGTTTTCTGATTTGCTGTT 59.491 37.500 0.00 0.00 0.00 3.16
2421 2645 5.557514 GCACATGTTTTCTGATTTGCTGTTG 60.558 40.000 0.00 0.00 0.00 3.33
2422 2646 5.050634 CACATGTTTTCTGATTTGCTGTTGG 60.051 40.000 0.00 0.00 0.00 3.77
2423 2647 4.734398 TGTTTTCTGATTTGCTGTTGGT 57.266 36.364 0.00 0.00 0.00 3.67
2424 2648 4.681744 TGTTTTCTGATTTGCTGTTGGTC 58.318 39.130 0.00 0.00 0.00 4.02
2425 2649 4.159321 TGTTTTCTGATTTGCTGTTGGTCA 59.841 37.500 0.00 0.00 0.00 4.02
2426 2650 4.998671 TTTCTGATTTGCTGTTGGTCAA 57.001 36.364 0.00 0.00 0.00 3.18
2427 2651 4.998671 TTCTGATTTGCTGTTGGTCAAA 57.001 36.364 0.00 0.00 36.72 2.69
2428 2652 4.998671 TCTGATTTGCTGTTGGTCAAAA 57.001 36.364 0.00 0.00 36.02 2.44
2429 2653 4.681744 TCTGATTTGCTGTTGGTCAAAAC 58.318 39.130 0.00 0.00 36.02 2.43
2430 2654 4.159321 TCTGATTTGCTGTTGGTCAAAACA 59.841 37.500 0.00 0.00 37.71 2.83
2431 2655 4.180057 TGATTTGCTGTTGGTCAAAACAC 58.820 39.130 0.00 0.00 35.16 3.32
2432 2656 3.667497 TTTGCTGTTGGTCAAAACACA 57.333 38.095 0.00 0.00 35.16 3.72
2433 2657 2.645730 TGCTGTTGGTCAAAACACAC 57.354 45.000 0.00 0.00 35.16 3.82
2434 2658 1.889170 TGCTGTTGGTCAAAACACACA 59.111 42.857 0.00 0.00 35.16 3.72
2435 2659 2.258755 GCTGTTGGTCAAAACACACAC 58.741 47.619 0.00 0.00 35.16 3.82
2436 2660 2.094752 GCTGTTGGTCAAAACACACACT 60.095 45.455 0.00 0.00 35.16 3.55
2437 2661 3.127895 GCTGTTGGTCAAAACACACACTA 59.872 43.478 0.00 0.00 35.16 2.74
2438 2662 4.658071 CTGTTGGTCAAAACACACACTAC 58.342 43.478 0.00 0.00 35.16 2.73
2439 2663 4.328536 TGTTGGTCAAAACACACACTACT 58.671 39.130 0.00 0.00 35.16 2.57
2440 2664 4.393680 TGTTGGTCAAAACACACACTACTC 59.606 41.667 0.00 0.00 35.16 2.59
2441 2665 4.481368 TGGTCAAAACACACACTACTCT 57.519 40.909 0.00 0.00 0.00 3.24
2442 2666 5.601583 TGGTCAAAACACACACTACTCTA 57.398 39.130 0.00 0.00 0.00 2.43
2443 2667 5.353938 TGGTCAAAACACACACTACTCTAC 58.646 41.667 0.00 0.00 0.00 2.59
2444 2668 5.128171 TGGTCAAAACACACACTACTCTACT 59.872 40.000 0.00 0.00 0.00 2.57
2445 2669 5.462398 GGTCAAAACACACACTACTCTACTG 59.538 44.000 0.00 0.00 0.00 2.74
2446 2670 6.040878 GTCAAAACACACACTACTCTACTGT 58.959 40.000 0.00 0.00 0.00 3.55
2447 2671 7.198390 GTCAAAACACACACTACTCTACTGTA 58.802 38.462 0.00 0.00 0.00 2.74
2448 2672 7.866393 GTCAAAACACACACTACTCTACTGTAT 59.134 37.037 0.00 0.00 0.00 2.29
2449 2673 9.070179 TCAAAACACACACTACTCTACTGTATA 57.930 33.333 0.00 0.00 0.00 1.47
2450 2674 9.687210 CAAAACACACACTACTCTACTGTATAA 57.313 33.333 0.00 0.00 0.00 0.98
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
16 17 1.200716 CATGTTTCGGCAAGCTGACAT 59.799 47.619 2.48 2.91 0.00 3.06
68 69 6.877322 GGGACTGTTAGCAAGTAATCTTAACA 59.123 38.462 0.00 0.00 32.37 2.41
73 74 5.248477 TCAAGGGACTGTTAGCAAGTAATCT 59.752 40.000 0.00 0.00 40.86 2.40
121 122 6.432162 CCATGAATCTCCAACTGAAAGAAGAA 59.568 38.462 0.00 0.00 37.43 2.52
127 128 4.038271 AGCCATGAATCTCCAACTGAAA 57.962 40.909 0.00 0.00 0.00 2.69
137 138 2.736719 CGACTCGACAAGCCATGAATCT 60.737 50.000 0.00 0.00 0.00 2.40
191 192 2.071778 AATATGTGGATGTGTGGGCC 57.928 50.000 0.00 0.00 0.00 5.80
224 225 3.011818 TGCATGAGGCTATGTGTTTCTG 58.988 45.455 0.00 0.00 45.15 3.02
232 233 4.707030 TGAGTTTTTGCATGAGGCTATG 57.293 40.909 0.00 0.00 45.15 2.23
234 235 4.022935 CAGTTGAGTTTTTGCATGAGGCTA 60.023 41.667 0.00 0.00 45.15 3.93
256 257 3.111853 AGATGAACAAGCGACAACTCA 57.888 42.857 0.00 0.00 0.00 3.41
257 258 3.494626 TGAAGATGAACAAGCGACAACTC 59.505 43.478 0.00 0.00 0.00 3.01
267 268 3.256383 CAGGCCAACATGAAGATGAACAA 59.744 43.478 5.01 0.00 33.36 2.83
275 276 4.395959 AAATATGCAGGCCAACATGAAG 57.604 40.909 18.12 0.00 0.00 3.02
298 299 4.947388 GGTGGCTATCTATGTTTTTGGTCA 59.053 41.667 0.00 0.00 0.00 4.02
304 305 3.199071 TGACGGGTGGCTATCTATGTTTT 59.801 43.478 0.00 0.00 0.00 2.43
306 307 2.394632 TGACGGGTGGCTATCTATGTT 58.605 47.619 0.00 0.00 0.00 2.71
310 311 2.677542 AGATGACGGGTGGCTATCTA 57.322 50.000 0.00 0.00 0.00 1.98
311 312 1.794714 AAGATGACGGGTGGCTATCT 58.205 50.000 0.00 0.00 0.00 1.98
312 313 2.622064 AAAGATGACGGGTGGCTATC 57.378 50.000 0.00 0.00 0.00 2.08
313 314 2.505819 AGAAAAGATGACGGGTGGCTAT 59.494 45.455 0.00 0.00 0.00 2.97
314 315 1.906574 AGAAAAGATGACGGGTGGCTA 59.093 47.619 0.00 0.00 0.00 3.93
315 316 0.693049 AGAAAAGATGACGGGTGGCT 59.307 50.000 0.00 0.00 0.00 4.75
316 317 1.468914 GAAGAAAAGATGACGGGTGGC 59.531 52.381 0.00 0.00 0.00 5.01
317 318 2.484264 GTGAAGAAAAGATGACGGGTGG 59.516 50.000 0.00 0.00 0.00 4.61
318 319 3.403038 AGTGAAGAAAAGATGACGGGTG 58.597 45.455 0.00 0.00 0.00 4.61
319 320 3.071023 TGAGTGAAGAAAAGATGACGGGT 59.929 43.478 0.00 0.00 0.00 5.28
320 321 3.433615 GTGAGTGAAGAAAAGATGACGGG 59.566 47.826 0.00 0.00 0.00 5.28
321 322 4.058124 TGTGAGTGAAGAAAAGATGACGG 58.942 43.478 0.00 0.00 0.00 4.79
322 323 4.747108 AGTGTGAGTGAAGAAAAGATGACG 59.253 41.667 0.00 0.00 0.00 4.35
323 324 7.600375 TCATAGTGTGAGTGAAGAAAAGATGAC 59.400 37.037 0.00 0.00 31.80 3.06
324 325 7.600375 GTCATAGTGTGAGTGAAGAAAAGATGA 59.400 37.037 0.00 0.00 37.56 2.92
325 326 7.411264 CGTCATAGTGTGAGTGAAGAAAAGATG 60.411 40.741 0.00 0.00 37.56 2.90
326 327 6.587990 CGTCATAGTGTGAGTGAAGAAAAGAT 59.412 38.462 0.00 0.00 37.56 2.40
327 328 5.920840 CGTCATAGTGTGAGTGAAGAAAAGA 59.079 40.000 0.00 0.00 37.56 2.52
328 329 5.119279 CCGTCATAGTGTGAGTGAAGAAAAG 59.881 44.000 0.00 0.00 37.56 2.27
329 330 4.988540 CCGTCATAGTGTGAGTGAAGAAAA 59.011 41.667 0.00 0.00 37.56 2.29
330 331 4.038763 ACCGTCATAGTGTGAGTGAAGAAA 59.961 41.667 0.00 0.00 37.56 2.52
331 332 3.572682 ACCGTCATAGTGTGAGTGAAGAA 59.427 43.478 0.00 0.00 37.56 2.52
332 333 3.154710 ACCGTCATAGTGTGAGTGAAGA 58.845 45.455 0.00 0.00 37.56 2.87
333 334 3.057526 TGACCGTCATAGTGTGAGTGAAG 60.058 47.826 0.00 0.00 37.56 3.02
334 335 2.888414 TGACCGTCATAGTGTGAGTGAA 59.112 45.455 0.00 0.00 37.56 3.18
335 336 2.510613 TGACCGTCATAGTGTGAGTGA 58.489 47.619 0.00 0.00 37.56 3.41
336 337 3.297830 TTGACCGTCATAGTGTGAGTG 57.702 47.619 1.09 0.00 37.56 3.51
337 338 3.509967 TCATTGACCGTCATAGTGTGAGT 59.490 43.478 1.09 0.00 37.56 3.41
338 339 4.110036 TCATTGACCGTCATAGTGTGAG 57.890 45.455 1.09 0.00 37.56 3.51
339 340 4.736126 ATCATTGACCGTCATAGTGTGA 57.264 40.909 1.09 3.35 0.00 3.58
340 341 5.232202 GTGTATCATTGACCGTCATAGTGTG 59.768 44.000 1.09 0.00 0.00 3.82
341 342 5.348986 GTGTATCATTGACCGTCATAGTGT 58.651 41.667 1.09 0.00 0.00 3.55
342 343 4.745125 GGTGTATCATTGACCGTCATAGTG 59.255 45.833 1.09 2.78 0.00 2.74
343 344 4.649674 AGGTGTATCATTGACCGTCATAGT 59.350 41.667 1.09 0.00 34.72 2.12
344 345 5.201713 AGGTGTATCATTGACCGTCATAG 57.798 43.478 1.09 0.00 34.72 2.23
345 346 4.647399 TGAGGTGTATCATTGACCGTCATA 59.353 41.667 1.09 0.00 34.72 2.15
346 347 3.450817 TGAGGTGTATCATTGACCGTCAT 59.549 43.478 1.09 0.00 34.72 3.06
347 348 2.829120 TGAGGTGTATCATTGACCGTCA 59.171 45.455 0.00 0.00 34.72 4.35
348 349 3.187700 GTGAGGTGTATCATTGACCGTC 58.812 50.000 0.00 0.00 34.72 4.79
349 350 2.093658 GGTGAGGTGTATCATTGACCGT 60.094 50.000 0.00 0.00 34.72 4.83
350 351 2.093711 TGGTGAGGTGTATCATTGACCG 60.094 50.000 0.00 0.00 34.72 4.79
351 352 3.197766 TCTGGTGAGGTGTATCATTGACC 59.802 47.826 0.00 0.00 0.00 4.02
371 372 2.303311 GTCAAGGTTAGAGGGCTTGTCT 59.697 50.000 0.00 0.00 0.00 3.41
383 384 7.225931 GTGATGAGTTAAAGTGTGTCAAGGTTA 59.774 37.037 0.00 0.00 0.00 2.85
460 461 3.438087 AGTTGTGTTGATGCTAGACATGC 59.562 43.478 0.00 0.00 39.84 4.06
489 494 5.438761 AGTGACTTTTGATGCTTAACCAC 57.561 39.130 0.00 0.00 0.00 4.16
525 530 7.814264 AGAAAAGATCAGTTGAATGAACACT 57.186 32.000 0.00 0.00 36.98 3.55
535 540 6.159293 GCCCCTAAAAAGAAAAGATCAGTTG 58.841 40.000 0.00 0.00 0.00 3.16
542 547 3.844640 AGCTGCCCCTAAAAAGAAAAGA 58.155 40.909 0.00 0.00 0.00 2.52
548 553 2.620585 GCATCTAGCTGCCCCTAAAAAG 59.379 50.000 7.34 0.00 41.15 2.27
549 554 2.025416 TGCATCTAGCTGCCCCTAAAAA 60.025 45.455 15.60 0.00 45.94 1.94
559 564 2.476854 GCTTTTTCCGTGCATCTAGCTG 60.477 50.000 0.00 0.00 45.94 4.24
586 596 4.157656 GCCACATGCTCCTGTTGTTTATTA 59.842 41.667 0.00 0.00 36.87 0.98
681 691 3.452627 AGCCAACTAGCTACTACTTGCAT 59.547 43.478 0.00 0.00 42.70 3.96
728 738 4.943705 TCAGACATCAACTTGCCCTTTATC 59.056 41.667 0.00 0.00 0.00 1.75
735 745 2.715046 TGGATCAGACATCAACTTGCC 58.285 47.619 0.00 0.00 0.00 4.52
753 763 0.678684 TGTGCACAGATGGCAGATGG 60.679 55.000 17.42 0.00 42.85 3.51
754 764 1.389555 ATGTGCACAGATGGCAGATG 58.610 50.000 25.84 0.00 42.80 2.90
755 765 1.389555 CATGTGCACAGATGGCAGAT 58.610 50.000 25.84 1.33 44.95 2.90
756 766 1.310216 GCATGTGCACAGATGGCAGA 61.310 55.000 25.84 0.00 42.85 4.26
757 767 1.138883 GCATGTGCACAGATGGCAG 59.861 57.895 25.84 9.41 42.85 4.85
758 768 3.280211 GCATGTGCACAGATGGCA 58.720 55.556 25.84 0.00 41.59 4.92
807 817 4.424566 CACATGGGCCACGCAAGC 62.425 66.667 9.28 0.00 45.62 4.01
825 835 0.399376 TAGTATCCCGTGGCCACCAT 60.399 55.000 29.95 20.32 35.28 3.55
922 940 1.971149 ATGGATGGGTTGAGGAGACA 58.029 50.000 0.00 0.00 0.00 3.41
942 960 2.560504 CTTTGTGGTGTGTGTAGCTGA 58.439 47.619 0.00 0.00 0.00 4.26
976 1006 2.188994 CTAGGTGGCTGGCTGCTC 59.811 66.667 16.14 9.44 42.39 4.26
1014 1044 2.550978 GTGGCGCTGCTTCTCTTATTA 58.449 47.619 7.64 0.00 0.00 0.98
1047 1077 1.001597 GCTACGCCTAAGACTACGCAT 60.002 52.381 0.00 0.00 0.00 4.73
1210 1344 5.316987 CCCTCTTGCTTCTTCTCCTTTTAA 58.683 41.667 0.00 0.00 0.00 1.52
1213 1347 2.040947 CCCCTCTTGCTTCTTCTCCTTT 59.959 50.000 0.00 0.00 0.00 3.11
1270 1404 0.179097 GCTTCTACCTCTTGCTCCCG 60.179 60.000 0.00 0.00 0.00 5.14
1294 1434 1.541672 CTCCTCCTCCTCCTCCTCC 59.458 68.421 0.00 0.00 0.00 4.30
1295 1435 1.152546 GCTCCTCCTCCTCCTCCTC 60.153 68.421 0.00 0.00 0.00 3.71
1296 1436 1.625565 AGCTCCTCCTCCTCCTCCT 60.626 63.158 0.00 0.00 0.00 3.69
1297 1437 1.457455 CAGCTCCTCCTCCTCCTCC 60.457 68.421 0.00 0.00 0.00 4.30
1298 1438 1.457455 CCAGCTCCTCCTCCTCCTC 60.457 68.421 0.00 0.00 0.00 3.71
1299 1439 2.695597 CCAGCTCCTCCTCCTCCT 59.304 66.667 0.00 0.00 0.00 3.69
1300 1440 2.445654 CCCAGCTCCTCCTCCTCC 60.446 72.222 0.00 0.00 0.00 4.30
1301 1441 2.305314 TAGCCCAGCTCCTCCTCCTC 62.305 65.000 0.00 0.00 40.44 3.71
1302 1442 2.328589 TAGCCCAGCTCCTCCTCCT 61.329 63.158 0.00 0.00 40.44 3.69
1344 1484 0.037877 TCTCTTCGACTTCCCGTCCT 59.962 55.000 0.00 0.00 39.56 3.85
1355 1495 3.059597 CGCTTGCTTCTTTTTCTCTTCGA 60.060 43.478 0.00 0.00 0.00 3.71
1419 1559 1.971167 GTGGCGGCACATGAAGGAA 60.971 57.895 34.40 0.00 0.00 3.36
1478 1618 0.533951 CCCTCTTGCTTCATTTGGCC 59.466 55.000 0.00 0.00 0.00 5.36
1485 1625 3.368427 CGACTTATCACCCTCTTGCTTCA 60.368 47.826 0.00 0.00 0.00 3.02
1515 1655 2.350895 CCCTCCACCGTTGATGCA 59.649 61.111 0.00 0.00 0.00 3.96
1521 1661 4.643387 GCAGCACCCTCCACCGTT 62.643 66.667 0.00 0.00 0.00 4.44
1551 1755 0.598065 AGGAAAGCAAACGATGTGGC 59.402 50.000 0.00 0.00 0.00 5.01
1553 1757 4.481930 TGTTAGGAAAGCAAACGATGTG 57.518 40.909 0.00 0.00 0.00 3.21
1586 1790 3.057104 ACAACGTACGAGATTGATGACCA 60.057 43.478 24.41 0.00 0.00 4.02
1599 1803 2.927477 ACAGCCATGATAACAACGTACG 59.073 45.455 15.01 15.01 0.00 3.67
1617 1821 4.508662 GGGAGAATGGAAGTACTCAACAG 58.491 47.826 0.00 0.00 0.00 3.16
1635 1839 2.551721 GCTCACACATGGATATGGGGAG 60.552 54.545 0.00 0.00 42.19 4.30
1694 1906 5.481200 TTCAAAATGGAAAACGACGTACA 57.519 34.783 0.00 0.00 0.00 2.90
1695 1907 6.979701 ATTTCAAAATGGAAAACGACGTAC 57.020 33.333 0.00 0.00 39.94 3.67
1697 1909 7.988904 TTTATTTCAAAATGGAAAACGACGT 57.011 28.000 0.00 0.00 39.94 4.34
1731 1943 6.229936 ACAGATACCTGCGGTTTTCTTATA 57.770 37.500 5.57 0.00 44.16 0.98
1737 1949 3.552068 GCAAAACAGATACCTGCGGTTTT 60.552 43.478 5.57 0.00 44.16 2.43
1751 1963 2.531998 GCACAACGAAAACGCAAAACAG 60.532 45.455 0.00 0.00 0.00 3.16
1758 1970 2.292916 GGCAGCACAACGAAAACGC 61.293 57.895 0.00 0.00 0.00 4.84
1760 1972 1.851658 ATTGGCAGCACAACGAAAAC 58.148 45.000 0.00 0.00 32.39 2.43
1765 1977 2.634982 AACATATTGGCAGCACAACG 57.365 45.000 0.00 0.00 32.39 4.10
1787 1999 0.809636 GGTGCCACAAAACCAGTTGC 60.810 55.000 0.00 0.00 36.41 4.17
1805 2017 6.978343 TCTTTTGTATCACCTTACAATCGG 57.022 37.500 0.00 0.00 40.67 4.18
1834 2046 8.895932 ATTAAGTTGTTTTATCAGCGCTTAAG 57.104 30.769 7.50 0.00 32.88 1.85
1899 2111 5.106515 GCTAGCCAAAAGAAGTTTACTCCTG 60.107 44.000 2.29 0.00 0.00 3.86
1934 2150 6.831769 GGATACACGTATATCCATTTGCTTG 58.168 40.000 24.78 0.00 46.94 4.01
1963 2179 2.664185 CTCGCAGATGCATCCCCG 60.664 66.667 23.06 23.13 42.21 5.73
1981 2197 2.244651 ACGTTTGAGCTCGTGGCAC 61.245 57.895 7.79 7.79 44.79 5.01
2013 2229 1.197721 GGCGTTGGATATATGCACTGC 59.802 52.381 16.85 16.85 0.00 4.40
2031 2247 2.745884 TGTACAGGTGCGCATGGC 60.746 61.111 15.91 9.13 43.96 4.40
2032 2248 1.026182 ATGTGTACAGGTGCGCATGG 61.026 55.000 15.91 9.04 43.05 3.66
2033 2249 2.470156 ATGTGTACAGGTGCGCATG 58.530 52.632 15.91 12.12 43.05 4.06
2034 2250 1.647545 GCATGTGTACAGGTGCGCAT 61.648 55.000 15.91 10.18 44.97 4.73
2035 2251 2.324330 GCATGTGTACAGGTGCGCA 61.324 57.895 5.66 5.66 39.80 6.09
2036 2252 1.647545 ATGCATGTGTACAGGTGCGC 61.648 55.000 21.00 0.00 40.34 6.09
2037 2253 0.374758 GATGCATGTGTACAGGTGCG 59.625 55.000 21.00 1.79 40.34 5.34
2038 2254 1.452110 TGATGCATGTGTACAGGTGC 58.548 50.000 20.14 20.14 38.05 5.01
2039 2255 3.690628 TCATTGATGCATGTGTACAGGTG 59.309 43.478 2.46 0.00 0.00 4.00
2040 2256 3.954200 TCATTGATGCATGTGTACAGGT 58.046 40.909 2.46 0.00 0.00 4.00
2041 2257 6.812879 ATATCATTGATGCATGTGTACAGG 57.187 37.500 2.46 0.00 0.00 4.00
2042 2258 8.132995 ACAAATATCATTGATGCATGTGTACAG 58.867 33.333 2.46 0.00 34.38 2.74
2043 2259 7.998580 ACAAATATCATTGATGCATGTGTACA 58.001 30.769 2.46 0.00 34.38 2.90
2044 2260 9.603298 CTACAAATATCATTGATGCATGTGTAC 57.397 33.333 2.46 0.00 34.38 2.90
2045 2261 8.785946 CCTACAAATATCATTGATGCATGTGTA 58.214 33.333 2.46 9.91 34.38 2.90
2046 2262 7.503230 TCCTACAAATATCATTGATGCATGTGT 59.497 33.333 2.46 9.34 34.38 3.72
2047 2263 7.806487 GTCCTACAAATATCATTGATGCATGTG 59.194 37.037 2.46 0.00 34.38 3.21
2048 2264 7.503230 TGTCCTACAAATATCATTGATGCATGT 59.497 33.333 2.46 12.15 34.38 3.21
2054 2270 8.638873 TCTACGTGTCCTACAAATATCATTGAT 58.361 33.333 0.00 4.28 34.38 2.57
2089 2305 7.315066 TGTATTCTGGATCAATGGCTATGTA 57.685 36.000 0.00 0.00 0.00 2.29
2109 2333 6.379988 GGATGGGTGGATGTTAAAGTTTGTAT 59.620 38.462 0.00 0.00 0.00 2.29
2112 2336 4.772100 AGGATGGGTGGATGTTAAAGTTTG 59.228 41.667 0.00 0.00 0.00 2.93
2137 2361 6.098266 ACATTATGGATATATGGCTACAGCGA 59.902 38.462 0.00 0.00 43.26 4.93
2159 2383 8.588290 TTTTTACATCAAGGCTGGTATAACAT 57.412 30.769 0.00 0.00 0.00 2.71
2162 2386 8.682710 GTCATTTTTACATCAAGGCTGGTATAA 58.317 33.333 0.00 0.00 0.00 0.98
2163 2387 7.011950 CGTCATTTTTACATCAAGGCTGGTATA 59.988 37.037 0.00 0.00 0.00 1.47
2164 2388 6.183360 CGTCATTTTTACATCAAGGCTGGTAT 60.183 38.462 0.00 0.00 0.00 2.73
2172 2396 6.092122 TGAGCCTACGTCATTTTTACATCAAG 59.908 38.462 0.00 0.00 0.00 3.02
2174 2398 5.483811 TGAGCCTACGTCATTTTTACATCA 58.516 37.500 0.00 0.00 0.00 3.07
2184 2408 2.101582 GGAATGACTGAGCCTACGTCAT 59.898 50.000 0.00 3.29 46.93 3.06
2185 2409 1.476891 GGAATGACTGAGCCTACGTCA 59.523 52.381 0.00 0.00 41.36 4.35
2192 2416 1.484240 AGCTACTGGAATGACTGAGCC 59.516 52.381 0.00 0.00 0.00 4.70
2195 2419 8.704668 TCAAATTATAGCTACTGGAATGACTGA 58.295 33.333 0.00 0.00 0.00 3.41
2196 2420 8.768955 GTCAAATTATAGCTACTGGAATGACTG 58.231 37.037 14.98 5.74 31.94 3.51
2197 2421 8.486210 TGTCAAATTATAGCTACTGGAATGACT 58.514 33.333 19.49 0.00 34.81 3.41
2198 2422 8.662781 TGTCAAATTATAGCTACTGGAATGAC 57.337 34.615 15.22 15.22 34.44 3.06
2228 2452 9.661563 TGACAGATTTTACCAACGAATATAAGT 57.338 29.630 0.00 0.00 0.00 2.24
2236 2460 9.476202 CATCTATATGACAGATTTTACCAACGA 57.524 33.333 0.00 0.00 34.84 3.85
2237 2461 8.223769 GCATCTATATGACAGATTTTACCAACG 58.776 37.037 0.00 0.00 34.84 4.10
2238 2462 8.223769 CGCATCTATATGACAGATTTTACCAAC 58.776 37.037 0.00 0.00 34.84 3.77
2239 2463 8.147704 TCGCATCTATATGACAGATTTTACCAA 58.852 33.333 0.00 0.00 34.84 3.67
2240 2464 7.598869 GTCGCATCTATATGACAGATTTTACCA 59.401 37.037 0.00 0.00 34.84 3.25
2241 2465 7.598869 TGTCGCATCTATATGACAGATTTTACC 59.401 37.037 0.00 0.00 36.50 2.85
2242 2466 8.520835 TGTCGCATCTATATGACAGATTTTAC 57.479 34.615 0.00 0.00 36.50 2.01
2243 2467 9.541143 TTTGTCGCATCTATATGACAGATTTTA 57.459 29.630 0.00 0.00 41.83 1.52
2244 2468 8.437360 TTTGTCGCATCTATATGACAGATTTT 57.563 30.769 0.00 0.00 41.83 1.82
2245 2469 8.437360 TTTTGTCGCATCTATATGACAGATTT 57.563 30.769 0.00 0.00 41.83 2.17
2246 2470 8.437360 TTTTTGTCGCATCTATATGACAGATT 57.563 30.769 0.00 0.00 41.83 2.40
2284 2508 9.857957 TGTGTTCTTTCATACATACATACGTAA 57.142 29.630 0.00 0.00 0.00 3.18
2285 2509 9.292846 GTGTGTTCTTTCATACATACATACGTA 57.707 33.333 0.00 0.00 36.67 3.57
2286 2510 8.033038 AGTGTGTTCTTTCATACATACATACGT 58.967 33.333 0.00 0.00 38.41 3.57
2287 2511 8.407457 AGTGTGTTCTTTCATACATACATACG 57.593 34.615 0.00 0.00 38.41 3.06
2301 2525 5.654650 TGTGGGTTATGAAAGTGTGTTCTTT 59.345 36.000 0.00 0.00 39.87 2.52
2302 2526 5.197451 TGTGGGTTATGAAAGTGTGTTCTT 58.803 37.500 0.00 0.00 0.00 2.52
2303 2527 4.787551 TGTGGGTTATGAAAGTGTGTTCT 58.212 39.130 0.00 0.00 0.00 3.01
2304 2528 5.508200 TTGTGGGTTATGAAAGTGTGTTC 57.492 39.130 0.00 0.00 0.00 3.18
2305 2529 5.923733 TTTGTGGGTTATGAAAGTGTGTT 57.076 34.783 0.00 0.00 0.00 3.32
2306 2530 5.654650 TCTTTTGTGGGTTATGAAAGTGTGT 59.345 36.000 0.00 0.00 0.00 3.72
2307 2531 6.142818 TCTTTTGTGGGTTATGAAAGTGTG 57.857 37.500 0.00 0.00 0.00 3.82
2308 2532 6.783708 TTCTTTTGTGGGTTATGAAAGTGT 57.216 33.333 0.00 0.00 0.00 3.55
2309 2533 7.488322 TCTTTCTTTTGTGGGTTATGAAAGTG 58.512 34.615 0.00 0.00 39.56 3.16
2310 2534 7.654022 TCTTTCTTTTGTGGGTTATGAAAGT 57.346 32.000 0.00 0.00 39.56 2.66
2311 2535 7.978975 TGTTCTTTCTTTTGTGGGTTATGAAAG 59.021 33.333 0.00 0.00 39.78 2.62
2312 2536 7.841956 TGTTCTTTCTTTTGTGGGTTATGAAA 58.158 30.769 0.00 0.00 0.00 2.69
2313 2537 7.411486 TGTTCTTTCTTTTGTGGGTTATGAA 57.589 32.000 0.00 0.00 0.00 2.57
2314 2538 7.432869 CATGTTCTTTCTTTTGTGGGTTATGA 58.567 34.615 0.00 0.00 0.00 2.15
2315 2539 6.146021 GCATGTTCTTTCTTTTGTGGGTTATG 59.854 38.462 0.00 0.00 0.00 1.90
2316 2540 6.041979 AGCATGTTCTTTCTTTTGTGGGTTAT 59.958 34.615 0.00 0.00 0.00 1.89
2317 2541 5.362430 AGCATGTTCTTTCTTTTGTGGGTTA 59.638 36.000 0.00 0.00 0.00 2.85
2318 2542 4.162131 AGCATGTTCTTTCTTTTGTGGGTT 59.838 37.500 0.00 0.00 0.00 4.11
2319 2543 3.706086 AGCATGTTCTTTCTTTTGTGGGT 59.294 39.130 0.00 0.00 0.00 4.51
2320 2544 4.326504 AGCATGTTCTTTCTTTTGTGGG 57.673 40.909 0.00 0.00 0.00 4.61
2321 2545 6.667007 AAAAGCATGTTCTTTCTTTTGTGG 57.333 33.333 5.90 0.00 35.41 4.17
2346 2570 8.447833 CGAGCTATTTAGTTTGGTTCATGTTTA 58.552 33.333 0.00 0.00 0.00 2.01
2347 2571 7.040686 ACGAGCTATTTAGTTTGGTTCATGTTT 60.041 33.333 0.00 0.00 0.00 2.83
2348 2572 6.430000 ACGAGCTATTTAGTTTGGTTCATGTT 59.570 34.615 0.00 0.00 0.00 2.71
2349 2573 5.938125 ACGAGCTATTTAGTTTGGTTCATGT 59.062 36.000 0.00 0.00 0.00 3.21
2350 2574 6.092122 TGACGAGCTATTTAGTTTGGTTCATG 59.908 38.462 0.00 0.00 0.00 3.07
2351 2575 6.170506 TGACGAGCTATTTAGTTTGGTTCAT 58.829 36.000 0.00 0.00 0.00 2.57
2352 2576 5.543714 TGACGAGCTATTTAGTTTGGTTCA 58.456 37.500 0.00 0.00 0.00 3.18
2353 2577 6.367969 TCTTGACGAGCTATTTAGTTTGGTTC 59.632 38.462 0.00 0.00 0.00 3.62
2354 2578 6.228258 TCTTGACGAGCTATTTAGTTTGGTT 58.772 36.000 0.00 0.00 0.00 3.67
2355 2579 5.790593 TCTTGACGAGCTATTTAGTTTGGT 58.209 37.500 0.00 0.00 0.00 3.67
2356 2580 6.238211 CCATCTTGACGAGCTATTTAGTTTGG 60.238 42.308 0.00 0.00 0.00 3.28
2357 2581 6.535150 TCCATCTTGACGAGCTATTTAGTTTG 59.465 38.462 0.00 0.00 0.00 2.93
2358 2582 6.640518 TCCATCTTGACGAGCTATTTAGTTT 58.359 36.000 0.00 0.00 0.00 2.66
2359 2583 6.222038 TCCATCTTGACGAGCTATTTAGTT 57.778 37.500 0.00 0.00 0.00 2.24
2360 2584 5.854010 TCCATCTTGACGAGCTATTTAGT 57.146 39.130 0.00 0.00 0.00 2.24
2361 2585 7.439356 TGATTTCCATCTTGACGAGCTATTTAG 59.561 37.037 0.00 0.00 0.00 1.85
2362 2586 7.272244 TGATTTCCATCTTGACGAGCTATTTA 58.728 34.615 0.00 0.00 0.00 1.40
2363 2587 6.115446 TGATTTCCATCTTGACGAGCTATTT 58.885 36.000 0.00 0.00 0.00 1.40
2364 2588 5.674525 TGATTTCCATCTTGACGAGCTATT 58.325 37.500 0.00 0.00 0.00 1.73
2365 2589 5.282055 TGATTTCCATCTTGACGAGCTAT 57.718 39.130 0.00 0.00 0.00 2.97
2366 2590 4.736126 TGATTTCCATCTTGACGAGCTA 57.264 40.909 0.00 0.00 0.00 3.32
2367 2591 3.616956 TGATTTCCATCTTGACGAGCT 57.383 42.857 0.00 0.00 0.00 4.09
2368 2592 4.685169 TTTGATTTCCATCTTGACGAGC 57.315 40.909 0.00 0.00 0.00 5.03
2369 2593 6.845302 TGAATTTGATTTCCATCTTGACGAG 58.155 36.000 0.00 0.00 0.00 4.18
2370 2594 6.816134 TGAATTTGATTTCCATCTTGACGA 57.184 33.333 0.00 0.00 0.00 4.20
2371 2595 6.034256 GCTTGAATTTGATTTCCATCTTGACG 59.966 38.462 0.00 0.00 0.00 4.35
2372 2596 6.034256 CGCTTGAATTTGATTTCCATCTTGAC 59.966 38.462 0.00 0.00 0.00 3.18
2373 2597 6.094719 CGCTTGAATTTGATTTCCATCTTGA 58.905 36.000 0.00 0.00 0.00 3.02
2374 2598 5.220340 GCGCTTGAATTTGATTTCCATCTTG 60.220 40.000 0.00 0.00 0.00 3.02
2375 2599 4.866486 GCGCTTGAATTTGATTTCCATCTT 59.134 37.500 0.00 0.00 0.00 2.40
2376 2600 4.082081 TGCGCTTGAATTTGATTTCCATCT 60.082 37.500 9.73 0.00 0.00 2.90
2377 2601 4.032104 GTGCGCTTGAATTTGATTTCCATC 59.968 41.667 9.73 0.00 0.00 3.51
2378 2602 3.928375 GTGCGCTTGAATTTGATTTCCAT 59.072 39.130 9.73 0.00 0.00 3.41
2379 2603 3.243670 TGTGCGCTTGAATTTGATTTCCA 60.244 39.130 9.73 0.00 0.00 3.53
2380 2604 3.316283 TGTGCGCTTGAATTTGATTTCC 58.684 40.909 9.73 0.00 0.00 3.13
2381 2605 4.386652 ACATGTGCGCTTGAATTTGATTTC 59.613 37.500 18.93 0.00 0.00 2.17
2382 2606 4.309099 ACATGTGCGCTTGAATTTGATTT 58.691 34.783 18.93 0.00 0.00 2.17
2383 2607 3.916761 ACATGTGCGCTTGAATTTGATT 58.083 36.364 18.93 0.00 0.00 2.57
2384 2608 3.581024 ACATGTGCGCTTGAATTTGAT 57.419 38.095 18.93 0.00 0.00 2.57
2385 2609 3.367992 AACATGTGCGCTTGAATTTGA 57.632 38.095 18.93 0.00 0.00 2.69
2386 2610 4.209703 AGAAAACATGTGCGCTTGAATTTG 59.790 37.500 18.93 0.00 0.00 2.32
2387 2611 4.209703 CAGAAAACATGTGCGCTTGAATTT 59.790 37.500 18.93 17.02 0.00 1.82
2388 2612 3.737266 CAGAAAACATGTGCGCTTGAATT 59.263 39.130 18.93 12.47 0.00 2.17
2389 2613 3.004629 TCAGAAAACATGTGCGCTTGAAT 59.995 39.130 18.93 5.45 0.00 2.57
2390 2614 2.357323 TCAGAAAACATGTGCGCTTGAA 59.643 40.909 18.93 0.00 0.00 2.69
2391 2615 1.946081 TCAGAAAACATGTGCGCTTGA 59.054 42.857 18.93 0.00 0.00 3.02
2392 2616 2.404265 TCAGAAAACATGTGCGCTTG 57.596 45.000 9.73 11.29 0.00 4.01
2393 2617 3.648339 AATCAGAAAACATGTGCGCTT 57.352 38.095 9.73 0.00 0.00 4.68
2394 2618 3.311106 CAAATCAGAAAACATGTGCGCT 58.689 40.909 9.73 0.00 0.00 5.92
2395 2619 2.159934 GCAAATCAGAAAACATGTGCGC 60.160 45.455 0.00 0.00 0.00 6.09
2396 2620 3.120616 CAGCAAATCAGAAAACATGTGCG 59.879 43.478 0.00 0.00 35.92 5.34
2397 2621 4.053295 ACAGCAAATCAGAAAACATGTGC 58.947 39.130 0.00 0.00 0.00 4.57
2398 2622 5.050634 CCAACAGCAAATCAGAAAACATGTG 60.051 40.000 0.00 0.00 0.00 3.21
2399 2623 5.051816 CCAACAGCAAATCAGAAAACATGT 58.948 37.500 0.00 0.00 0.00 3.21
2400 2624 5.051816 ACCAACAGCAAATCAGAAAACATG 58.948 37.500 0.00 0.00 0.00 3.21
2401 2625 5.163426 TGACCAACAGCAAATCAGAAAACAT 60.163 36.000 0.00 0.00 0.00 2.71
2402 2626 4.159321 TGACCAACAGCAAATCAGAAAACA 59.841 37.500 0.00 0.00 0.00 2.83
2403 2627 4.681744 TGACCAACAGCAAATCAGAAAAC 58.318 39.130 0.00 0.00 0.00 2.43
2404 2628 4.998671 TGACCAACAGCAAATCAGAAAA 57.001 36.364 0.00 0.00 0.00 2.29
2405 2629 4.998671 TTGACCAACAGCAAATCAGAAA 57.001 36.364 0.00 0.00 0.00 2.52
2406 2630 4.998671 TTTGACCAACAGCAAATCAGAA 57.001 36.364 0.00 0.00 0.00 3.02
2407 2631 4.159321 TGTTTTGACCAACAGCAAATCAGA 59.841 37.500 0.00 0.00 34.36 3.27
2408 2632 4.268405 GTGTTTTGACCAACAGCAAATCAG 59.732 41.667 0.00 0.00 37.33 2.90
2409 2633 4.180057 GTGTTTTGACCAACAGCAAATCA 58.820 39.130 0.00 0.00 37.33 2.57
2410 2634 4.032786 GTGTGTTTTGACCAACAGCAAATC 59.967 41.667 0.00 0.00 37.33 2.17
2411 2635 3.932089 GTGTGTTTTGACCAACAGCAAAT 59.068 39.130 0.00 0.00 37.33 2.32
2412 2636 3.243873 TGTGTGTTTTGACCAACAGCAAA 60.244 39.130 0.00 0.00 37.33 3.68
2413 2637 2.297315 TGTGTGTTTTGACCAACAGCAA 59.703 40.909 0.00 0.00 37.33 3.91
2414 2638 1.889170 TGTGTGTTTTGACCAACAGCA 59.111 42.857 0.00 0.00 37.33 4.41
2415 2639 2.094752 AGTGTGTGTTTTGACCAACAGC 60.095 45.455 0.00 0.00 37.33 4.40
2416 2640 3.848272 AGTGTGTGTTTTGACCAACAG 57.152 42.857 0.00 0.00 37.33 3.16
2417 2641 4.328536 AGTAGTGTGTGTTTTGACCAACA 58.671 39.130 0.00 0.00 34.15 3.33
2418 2642 4.634443 AGAGTAGTGTGTGTTTTGACCAAC 59.366 41.667 0.00 0.00 0.00 3.77
2419 2643 4.839121 AGAGTAGTGTGTGTTTTGACCAA 58.161 39.130 0.00 0.00 0.00 3.67
2420 2644 4.481368 AGAGTAGTGTGTGTTTTGACCA 57.519 40.909 0.00 0.00 0.00 4.02
2421 2645 5.462398 CAGTAGAGTAGTGTGTGTTTTGACC 59.538 44.000 0.00 0.00 0.00 4.02
2422 2646 6.040878 ACAGTAGAGTAGTGTGTGTTTTGAC 58.959 40.000 0.00 0.00 40.64 3.18
2423 2647 6.216801 ACAGTAGAGTAGTGTGTGTTTTGA 57.783 37.500 0.00 0.00 40.64 2.69
2424 2648 9.687210 TTATACAGTAGAGTAGTGTGTGTTTTG 57.313 33.333 4.92 0.00 42.07 2.44


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.