Multiple sequence alignment - TraesCS6B01G013800

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G013800 chr6B 100.000 2421 0 0 1 2421 8427746 8430166 0.000000e+00 4471.0
1 TraesCS6B01G013800 chr6B 94.872 39 1 1 2162 2200 229134421 229134458 2.600000e-05 60.2
2 TraesCS6B01G013800 chr6A 94.013 1186 40 10 796 1965 3237829 3238999 0.000000e+00 1768.0
3 TraesCS6B01G013800 chr6A 88.644 634 44 4 1137 1758 3206370 3206987 0.000000e+00 747.0
4 TraesCS6B01G013800 chr6A 86.051 509 47 15 600 1099 3004955 3005448 2.130000e-145 525.0
5 TraesCS6B01G013800 chr6A 94.805 308 10 4 796 1101 3206087 3206390 2.180000e-130 475.0
6 TraesCS6B01G013800 chr6A 91.753 291 23 1 233 522 3004675 3004965 1.040000e-108 403.0
7 TraesCS6B01G013800 chr6A 94.667 225 12 0 2197 2421 3241045 3241269 1.380000e-92 350.0
8 TraesCS6B01G013800 chr6A 92.893 197 9 4 2012 2206 3240807 3241000 5.100000e-72 281.0
9 TraesCS6B01G013800 chr6A 100.000 42 0 0 796 837 3206016 3206057 7.180000e-11 78.7
10 TraesCS6B01G013800 chr1B 83.628 226 26 6 2197 2421 666033076 666033291 4.080000e-48 202.0
11 TraesCS6B01G013800 chr7B 92.308 52 1 3 2143 2192 33896558 33896608 1.200000e-08 71.3
12 TraesCS6B01G013800 chr7B 93.023 43 1 2 2157 2199 64441797 64441837 7.230000e-06 62.1
13 TraesCS6B01G013800 chr6D 89.286 56 5 1 2138 2192 26817518 26817463 4.320000e-08 69.4
14 TraesCS6B01G013800 chr6D 89.286 56 5 1 2138 2192 26861266 26861211 4.320000e-08 69.4
15 TraesCS6B01G013800 chr6D 89.286 56 5 1 2138 2192 26897606 26897551 4.320000e-08 69.4
16 TraesCS6B01G013800 chr7A 93.333 45 2 1 2150 2194 101469125 101469082 5.590000e-07 65.8
17 TraesCS6B01G013800 chr3D 88.000 50 2 4 2148 2195 149233568 149233615 3.360000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G013800 chr6B 8427746 8430166 2420 False 4471.000000 4471 100.000000 1 2421 1 chr6B.!!$F1 2420
1 TraesCS6B01G013800 chr6A 3237829 3241269 3440 False 799.666667 1768 93.857667 796 2421 3 chr6A.!!$F3 1625
2 TraesCS6B01G013800 chr6A 3004675 3005448 773 False 464.000000 525 88.902000 233 1099 2 chr6A.!!$F1 866
3 TraesCS6B01G013800 chr6A 3206016 3206987 971 False 433.566667 747 94.483000 796 1758 3 chr6A.!!$F2 962

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
578 580 0.320683 CCACATGAACAGAGCCACGA 60.321 55.0 0.0 0.0 0.0 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1997 3888 0.036164 TACAGAAATGGCCGCACTGT 59.964 50.0 21.63 21.63 42.94 3.55 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 7.671495 GTTGGCCATGAAAGATTTGTTTATT 57.329 32.000 6.09 0.00 0.00 1.40
25 26 7.742151 GTTGGCCATGAAAGATTTGTTTATTC 58.258 34.615 6.09 0.00 0.00 1.75
26 27 6.405538 TGGCCATGAAAGATTTGTTTATTCC 58.594 36.000 0.00 0.00 0.00 3.01
27 28 5.519927 GGCCATGAAAGATTTGTTTATTCCG 59.480 40.000 0.00 0.00 0.00 4.30
28 29 6.099341 GCCATGAAAGATTTGTTTATTCCGT 58.901 36.000 0.00 0.00 0.00 4.69
29 30 6.253512 GCCATGAAAGATTTGTTTATTCCGTC 59.746 38.462 0.00 0.00 0.00 4.79
30 31 7.538575 CCATGAAAGATTTGTTTATTCCGTCT 58.461 34.615 0.00 0.00 0.00 4.18
31 32 8.028938 CCATGAAAGATTTGTTTATTCCGTCTT 58.971 33.333 0.00 0.00 0.00 3.01
32 33 9.410556 CATGAAAGATTTGTTTATTCCGTCTTT 57.589 29.630 0.00 0.00 37.20 2.52
33 34 9.981114 ATGAAAGATTTGTTTATTCCGTCTTTT 57.019 25.926 0.00 0.00 35.34 2.27
34 35 9.243637 TGAAAGATTTGTTTATTCCGTCTTTTG 57.756 29.630 0.00 0.00 35.34 2.44
35 36 7.637709 AAGATTTGTTTATTCCGTCTTTTGC 57.362 32.000 0.00 0.00 0.00 3.68
36 37 6.156519 AGATTTGTTTATTCCGTCTTTTGCC 58.843 36.000 0.00 0.00 0.00 4.52
37 38 3.926821 TGTTTATTCCGTCTTTTGCCC 57.073 42.857 0.00 0.00 0.00 5.36
38 39 3.492337 TGTTTATTCCGTCTTTTGCCCT 58.508 40.909 0.00 0.00 0.00 5.19
39 40 3.892588 TGTTTATTCCGTCTTTTGCCCTT 59.107 39.130 0.00 0.00 0.00 3.95
40 41 5.071370 TGTTTATTCCGTCTTTTGCCCTTA 58.929 37.500 0.00 0.00 0.00 2.69
41 42 5.535406 TGTTTATTCCGTCTTTTGCCCTTAA 59.465 36.000 0.00 0.00 0.00 1.85
42 43 5.890424 TTATTCCGTCTTTTGCCCTTAAG 57.110 39.130 0.00 0.00 0.00 1.85
43 44 3.495434 TTCCGTCTTTTGCCCTTAAGA 57.505 42.857 3.36 0.00 0.00 2.10
44 45 2.774687 TCCGTCTTTTGCCCTTAAGAC 58.225 47.619 3.36 0.00 44.23 3.01
45 46 1.810755 CCGTCTTTTGCCCTTAAGACC 59.189 52.381 3.36 0.00 44.63 3.85
46 47 2.552373 CCGTCTTTTGCCCTTAAGACCT 60.552 50.000 3.36 0.00 44.63 3.85
47 48 3.146847 CGTCTTTTGCCCTTAAGACCTT 58.853 45.455 3.36 0.00 44.63 3.50
48 49 3.568430 CGTCTTTTGCCCTTAAGACCTTT 59.432 43.478 3.36 0.00 44.63 3.11
49 50 4.320275 CGTCTTTTGCCCTTAAGACCTTTC 60.320 45.833 3.36 0.00 44.63 2.62
50 51 3.818773 TCTTTTGCCCTTAAGACCTTTCG 59.181 43.478 3.36 0.00 0.00 3.46
51 52 3.495434 TTTGCCCTTAAGACCTTTCGA 57.505 42.857 3.36 0.00 0.00 3.71
52 53 3.713826 TTGCCCTTAAGACCTTTCGAT 57.286 42.857 3.36 0.00 0.00 3.59
53 54 3.261981 TGCCCTTAAGACCTTTCGATC 57.738 47.619 3.36 0.00 0.00 3.69
54 55 2.202566 GCCCTTAAGACCTTTCGATCG 58.797 52.381 9.36 9.36 0.00 3.69
55 56 2.822764 CCCTTAAGACCTTTCGATCGG 58.177 52.381 16.41 0.89 0.00 4.18
56 57 2.202566 CCTTAAGACCTTTCGATCGGC 58.797 52.381 16.41 0.00 0.00 5.54
57 58 2.159085 CCTTAAGACCTTTCGATCGGCT 60.159 50.000 16.41 0.80 0.00 5.52
58 59 3.067742 CCTTAAGACCTTTCGATCGGCTA 59.932 47.826 16.41 0.00 0.00 3.93
59 60 2.873133 AAGACCTTTCGATCGGCTAG 57.127 50.000 16.41 9.84 0.00 3.42
60 61 0.386113 AGACCTTTCGATCGGCTAGC 59.614 55.000 16.41 6.04 0.00 3.42
61 62 0.935366 GACCTTTCGATCGGCTAGCG 60.935 60.000 16.41 4.38 38.68 4.26
62 63 1.661821 CCTTTCGATCGGCTAGCGG 60.662 63.158 16.41 15.73 37.65 5.52
63 64 2.279252 TTTCGATCGGCTAGCGGC 60.279 61.111 16.41 3.85 37.65 6.53
72 73 3.198489 GCTAGCGGCCTGTTCTGC 61.198 66.667 0.00 0.00 38.60 4.26
73 74 2.512515 CTAGCGGCCTGTTCTGCC 60.513 66.667 0.00 0.00 45.70 4.85
89 90 3.287445 CCACCGGGCCATTTTCAG 58.713 61.111 6.32 0.00 0.00 3.02
90 91 2.573340 CACCGGGCCATTTTCAGC 59.427 61.111 6.32 0.00 0.00 4.26
97 98 2.354902 GCCATTTTCAGCCAGTGGT 58.645 52.632 11.74 0.00 32.56 4.16
98 99 0.681175 GCCATTTTCAGCCAGTGGTT 59.319 50.000 11.74 0.44 32.56 3.67
99 100 1.337167 GCCATTTTCAGCCAGTGGTTC 60.337 52.381 11.74 0.00 32.56 3.62
100 101 2.242043 CCATTTTCAGCCAGTGGTTCT 58.758 47.619 11.74 0.00 0.00 3.01
101 102 3.420893 CCATTTTCAGCCAGTGGTTCTA 58.579 45.455 11.74 0.00 0.00 2.10
102 103 4.019174 CCATTTTCAGCCAGTGGTTCTAT 58.981 43.478 11.74 0.00 0.00 1.98
103 104 4.463891 CCATTTTCAGCCAGTGGTTCTATT 59.536 41.667 11.74 0.00 0.00 1.73
104 105 5.393461 CCATTTTCAGCCAGTGGTTCTATTC 60.393 44.000 11.74 0.00 0.00 1.75
105 106 4.365514 TTTCAGCCAGTGGTTCTATTCA 57.634 40.909 11.74 0.00 0.00 2.57
106 107 4.574674 TTCAGCCAGTGGTTCTATTCAT 57.425 40.909 11.74 0.00 0.00 2.57
107 108 4.142609 TCAGCCAGTGGTTCTATTCATC 57.857 45.455 11.74 0.00 0.00 2.92
108 109 3.118261 TCAGCCAGTGGTTCTATTCATCC 60.118 47.826 11.74 0.00 0.00 3.51
109 110 2.173569 AGCCAGTGGTTCTATTCATCCC 59.826 50.000 11.74 0.00 0.00 3.85
110 111 2.092429 GCCAGTGGTTCTATTCATCCCA 60.092 50.000 11.74 0.00 0.00 4.37
111 112 3.435601 GCCAGTGGTTCTATTCATCCCAT 60.436 47.826 11.74 0.00 0.00 4.00
112 113 4.796606 CCAGTGGTTCTATTCATCCCATT 58.203 43.478 0.00 0.00 0.00 3.16
113 114 5.690097 GCCAGTGGTTCTATTCATCCCATTA 60.690 44.000 11.74 0.00 0.00 1.90
114 115 6.364701 CCAGTGGTTCTATTCATCCCATTAA 58.635 40.000 0.00 0.00 0.00 1.40
115 116 6.833416 CCAGTGGTTCTATTCATCCCATTAAA 59.167 38.462 0.00 0.00 0.00 1.52
116 117 7.013655 CCAGTGGTTCTATTCATCCCATTAAAG 59.986 40.741 0.00 0.00 0.00 1.85
117 118 7.013655 CAGTGGTTCTATTCATCCCATTAAAGG 59.986 40.741 0.00 0.00 0.00 3.11
118 119 5.833131 TGGTTCTATTCATCCCATTAAAGGC 59.167 40.000 0.00 0.00 0.00 4.35
119 120 5.243954 GGTTCTATTCATCCCATTAAAGGCC 59.756 44.000 0.00 0.00 0.00 5.19
120 121 4.998051 TCTATTCATCCCATTAAAGGCCC 58.002 43.478 0.00 0.00 0.00 5.80
121 122 3.704545 ATTCATCCCATTAAAGGCCCA 57.295 42.857 0.00 0.00 0.00 5.36
122 123 3.704545 TTCATCCCATTAAAGGCCCAT 57.295 42.857 0.00 0.00 0.00 4.00
123 124 2.961510 TCATCCCATTAAAGGCCCATG 58.038 47.619 0.00 0.00 0.00 3.66
124 125 2.517553 TCATCCCATTAAAGGCCCATGA 59.482 45.455 0.00 0.00 0.00 3.07
125 126 3.052262 TCATCCCATTAAAGGCCCATGAA 60.052 43.478 0.00 0.00 0.00 2.57
126 127 3.481559 TCCCATTAAAGGCCCATGAAA 57.518 42.857 0.00 0.00 0.00 2.69
127 128 4.006247 TCCCATTAAAGGCCCATGAAAT 57.994 40.909 0.00 0.00 0.00 2.17
128 129 3.966665 TCCCATTAAAGGCCCATGAAATC 59.033 43.478 0.00 0.00 0.00 2.17
129 130 3.969312 CCCATTAAAGGCCCATGAAATCT 59.031 43.478 0.00 0.00 0.00 2.40
130 131 4.409901 CCCATTAAAGGCCCATGAAATCTT 59.590 41.667 0.00 0.00 0.00 2.40
131 132 5.104402 CCCATTAAAGGCCCATGAAATCTTT 60.104 40.000 0.00 1.75 0.00 2.52
132 133 5.818857 CCATTAAAGGCCCATGAAATCTTTG 59.181 40.000 0.00 0.00 0.00 2.77
133 134 3.986996 AAAGGCCCATGAAATCTTTGG 57.013 42.857 0.00 0.00 0.00 3.28
138 139 2.446435 CCCATGAAATCTTTGGGTCGT 58.554 47.619 11.61 0.00 44.30 4.34
139 140 2.825532 CCCATGAAATCTTTGGGTCGTT 59.174 45.455 11.61 0.00 44.30 3.85
140 141 3.258123 CCCATGAAATCTTTGGGTCGTTT 59.742 43.478 11.61 0.00 44.30 3.60
141 142 4.485163 CCATGAAATCTTTGGGTCGTTTC 58.515 43.478 0.00 0.00 0.00 2.78
142 143 4.022416 CCATGAAATCTTTGGGTCGTTTCA 60.022 41.667 0.00 0.00 41.37 2.69
143 144 5.508825 CCATGAAATCTTTGGGTCGTTTCAA 60.509 40.000 0.00 0.00 40.75 2.69
144 145 5.181690 TGAAATCTTTGGGTCGTTTCAAG 57.818 39.130 0.00 0.00 36.27 3.02
145 146 4.884744 TGAAATCTTTGGGTCGTTTCAAGA 59.115 37.500 0.00 0.00 36.27 3.02
146 147 4.830826 AATCTTTGGGTCGTTTCAAGAC 57.169 40.909 0.00 0.00 37.86 3.01
155 156 4.720530 GTCGTTTCAAGACCGTACATTT 57.279 40.909 0.00 0.00 32.78 2.32
156 157 4.451557 GTCGTTTCAAGACCGTACATTTG 58.548 43.478 0.00 0.00 32.78 2.32
157 158 4.025480 GTCGTTTCAAGACCGTACATTTGT 60.025 41.667 0.00 0.00 32.78 2.83
158 159 4.209703 TCGTTTCAAGACCGTACATTTGTC 59.790 41.667 0.00 0.00 0.00 3.18
159 160 4.609783 CGTTTCAAGACCGTACATTTGTCC 60.610 45.833 0.00 0.00 0.00 4.02
160 161 3.048337 TCAAGACCGTACATTTGTCCC 57.952 47.619 0.00 0.00 0.00 4.46
161 162 2.369203 TCAAGACCGTACATTTGTCCCA 59.631 45.455 0.00 0.00 0.00 4.37
162 163 3.008594 TCAAGACCGTACATTTGTCCCAT 59.991 43.478 0.00 0.00 0.00 4.00
163 164 3.713826 AGACCGTACATTTGTCCCATT 57.286 42.857 0.00 0.00 0.00 3.16
164 165 4.829872 AGACCGTACATTTGTCCCATTA 57.170 40.909 0.00 0.00 0.00 1.90
165 166 5.168647 AGACCGTACATTTGTCCCATTAA 57.831 39.130 0.00 0.00 0.00 1.40
166 167 5.751586 AGACCGTACATTTGTCCCATTAAT 58.248 37.500 0.00 0.00 0.00 1.40
167 168 6.184789 AGACCGTACATTTGTCCCATTAATT 58.815 36.000 0.00 0.00 0.00 1.40
168 169 7.340256 AGACCGTACATTTGTCCCATTAATTA 58.660 34.615 0.00 0.00 0.00 1.40
169 170 7.830201 AGACCGTACATTTGTCCCATTAATTAA 59.170 33.333 0.00 0.00 0.00 1.40
170 171 8.528044 ACCGTACATTTGTCCCATTAATTAAT 57.472 30.769 4.81 4.81 0.00 1.40
171 172 9.629878 ACCGTACATTTGTCCCATTAATTAATA 57.370 29.630 10.34 0.00 0.00 0.98
173 174 9.607285 CGTACATTTGTCCCATTAATTAATAGC 57.393 33.333 10.34 2.85 0.00 2.97
174 175 9.908152 GTACATTTGTCCCATTAATTAATAGCC 57.092 33.333 10.34 0.00 0.00 3.93
175 176 8.546083 ACATTTGTCCCATTAATTAATAGCCA 57.454 30.769 10.34 0.00 0.00 4.75
176 177 8.986991 ACATTTGTCCCATTAATTAATAGCCAA 58.013 29.630 10.34 5.34 0.00 4.52
182 183 9.586435 GTCCCATTAATTAATAGCCAATTATGC 57.414 33.333 10.34 0.00 30.18 3.14
183 184 8.757877 TCCCATTAATTAATAGCCAATTATGCC 58.242 33.333 10.34 0.00 30.18 4.40
184 185 8.761689 CCCATTAATTAATAGCCAATTATGCCT 58.238 33.333 10.34 0.00 30.18 4.75
189 190 8.899887 AATTAATAGCCAATTATGCCTATGGT 57.100 30.769 0.00 0.00 35.34 3.55
190 191 7.938140 TTAATAGCCAATTATGCCTATGGTC 57.062 36.000 0.00 0.00 35.34 4.02
191 192 5.786121 ATAGCCAATTATGCCTATGGTCT 57.214 39.130 0.00 0.00 35.34 3.85
192 193 3.759581 AGCCAATTATGCCTATGGTCTG 58.240 45.455 0.00 0.00 35.34 3.51
193 194 3.139025 AGCCAATTATGCCTATGGTCTGT 59.861 43.478 0.00 0.00 35.34 3.41
194 195 4.350816 AGCCAATTATGCCTATGGTCTGTA 59.649 41.667 0.00 0.00 35.34 2.74
195 196 5.014544 AGCCAATTATGCCTATGGTCTGTAT 59.985 40.000 0.00 0.00 35.34 2.29
196 197 5.711976 GCCAATTATGCCTATGGTCTGTATT 59.288 40.000 0.00 0.00 35.34 1.89
197 198 6.884295 GCCAATTATGCCTATGGTCTGTATTA 59.116 38.462 0.00 0.00 35.34 0.98
198 199 7.393234 GCCAATTATGCCTATGGTCTGTATTAA 59.607 37.037 0.00 0.00 35.34 1.40
199 200 8.950210 CCAATTATGCCTATGGTCTGTATTAAG 58.050 37.037 0.00 0.00 0.00 1.85
200 201 8.454106 CAATTATGCCTATGGTCTGTATTAAGC 58.546 37.037 0.00 0.00 0.00 3.09
201 202 4.351874 TGCCTATGGTCTGTATTAAGCC 57.648 45.455 0.00 0.00 0.00 4.35
202 203 3.072476 TGCCTATGGTCTGTATTAAGCCC 59.928 47.826 0.00 0.00 0.00 5.19
203 204 3.072476 GCCTATGGTCTGTATTAAGCCCA 59.928 47.826 0.00 0.00 0.00 5.36
204 205 4.263506 GCCTATGGTCTGTATTAAGCCCAT 60.264 45.833 0.00 0.00 36.66 4.00
205 206 5.248640 CCTATGGTCTGTATTAAGCCCATG 58.751 45.833 0.00 0.00 34.64 3.66
206 207 5.013079 CCTATGGTCTGTATTAAGCCCATGA 59.987 44.000 0.00 0.00 34.64 3.07
207 208 5.589367 ATGGTCTGTATTAAGCCCATGAT 57.411 39.130 0.00 0.00 31.70 2.45
208 209 4.717877 TGGTCTGTATTAAGCCCATGATG 58.282 43.478 0.00 0.00 0.00 3.07
209 210 4.074970 GGTCTGTATTAAGCCCATGATGG 58.925 47.826 3.98 3.98 37.25 3.51
217 218 3.122850 CCCATGATGGCTTTCCGC 58.877 61.111 5.79 0.00 35.79 5.54
230 231 3.754955 GCTTTCCGCCTATTAACAACAC 58.245 45.455 0.00 0.00 0.00 3.32
231 232 3.189702 GCTTTCCGCCTATTAACAACACA 59.810 43.478 0.00 0.00 0.00 3.72
283 284 2.766970 GCTTTTAGCACGTTTGTGGA 57.233 45.000 0.00 0.00 46.51 4.02
299 300 3.092301 TGTGGACCATGTTGTGTTTTGA 58.908 40.909 0.00 0.00 0.00 2.69
340 341 3.181463 TGTTATACGACCCATTAGTGGCC 60.181 47.826 0.00 0.00 44.62 5.36
341 342 1.502690 ATACGACCCATTAGTGGCCA 58.497 50.000 0.00 0.00 44.62 5.36
346 347 2.024414 GACCCATTAGTGGCCAATGTC 58.976 52.381 17.71 10.46 44.62 3.06
365 366 1.300542 ATGTTTTGGCCCGTTTGCG 60.301 52.632 0.00 0.00 37.95 4.85
379 380 0.605589 TTTGCGGCCCAAGGTTATTG 59.394 50.000 0.00 0.00 34.34 1.90
405 406 2.424091 CCATATGTGGCCCATGGTTACA 60.424 50.000 11.73 12.68 39.01 2.41
429 430 8.981647 ACAATGAGAAACTTGAAATAAATGCAC 58.018 29.630 0.00 0.00 0.00 4.57
437 438 6.740110 ACTTGAAATAAATGCACGGTACAAA 58.260 32.000 0.00 0.00 0.00 2.83
441 442 1.310904 AAATGCACGGTACAAACGGT 58.689 45.000 0.00 0.00 39.53 4.83
548 550 7.907214 TTTTAGAGAAAAGGCAGAGTATGAC 57.093 36.000 0.00 0.00 37.09 3.06
549 551 6.605471 TTAGAGAAAAGGCAGAGTATGACA 57.395 37.500 0.00 0.00 40.68 3.58
550 552 5.489792 AGAGAAAAGGCAGAGTATGACAA 57.510 39.130 0.00 0.00 40.68 3.18
551 553 5.486526 AGAGAAAAGGCAGAGTATGACAAG 58.513 41.667 0.00 0.00 40.68 3.16
552 554 5.247110 AGAGAAAAGGCAGAGTATGACAAGA 59.753 40.000 0.00 0.00 40.68 3.02
553 555 5.241662 AGAAAAGGCAGAGTATGACAAGAC 58.758 41.667 0.00 0.00 40.68 3.01
554 556 4.623932 AAAGGCAGAGTATGACAAGACA 57.376 40.909 0.00 0.00 40.68 3.41
555 557 3.883830 AGGCAGAGTATGACAAGACAG 57.116 47.619 0.00 0.00 40.68 3.51
556 558 3.435275 AGGCAGAGTATGACAAGACAGA 58.565 45.455 0.00 0.00 40.68 3.41
557 559 3.834813 AGGCAGAGTATGACAAGACAGAA 59.165 43.478 0.00 0.00 40.68 3.02
558 560 4.284490 AGGCAGAGTATGACAAGACAGAAA 59.716 41.667 0.00 0.00 40.68 2.52
559 561 4.390297 GGCAGAGTATGACAAGACAGAAAC 59.610 45.833 0.00 0.00 36.67 2.78
560 562 4.390297 GCAGAGTATGACAAGACAGAAACC 59.610 45.833 0.00 0.00 0.00 3.27
561 563 5.541845 CAGAGTATGACAAGACAGAAACCA 58.458 41.667 0.00 0.00 0.00 3.67
562 564 5.406780 CAGAGTATGACAAGACAGAAACCAC 59.593 44.000 0.00 0.00 0.00 4.16
563 565 5.070446 AGAGTATGACAAGACAGAAACCACA 59.930 40.000 0.00 0.00 0.00 4.17
564 566 5.869579 AGTATGACAAGACAGAAACCACAT 58.130 37.500 0.00 0.00 0.00 3.21
565 567 5.702670 AGTATGACAAGACAGAAACCACATG 59.297 40.000 0.00 0.00 0.00 3.21
566 568 4.149511 TGACAAGACAGAAACCACATGA 57.850 40.909 0.00 0.00 0.00 3.07
567 569 4.522114 TGACAAGACAGAAACCACATGAA 58.478 39.130 0.00 0.00 0.00 2.57
568 570 4.335315 TGACAAGACAGAAACCACATGAAC 59.665 41.667 0.00 0.00 0.00 3.18
569 571 4.269183 ACAAGACAGAAACCACATGAACA 58.731 39.130 0.00 0.00 0.00 3.18
570 572 4.336433 ACAAGACAGAAACCACATGAACAG 59.664 41.667 0.00 0.00 0.00 3.16
571 573 4.422073 AGACAGAAACCACATGAACAGA 57.578 40.909 0.00 0.00 0.00 3.41
572 574 4.384056 AGACAGAAACCACATGAACAGAG 58.616 43.478 0.00 0.00 0.00 3.35
573 575 2.880890 ACAGAAACCACATGAACAGAGC 59.119 45.455 0.00 0.00 0.00 4.09
574 576 2.227388 CAGAAACCACATGAACAGAGCC 59.773 50.000 0.00 0.00 0.00 4.70
575 577 2.158623 AGAAACCACATGAACAGAGCCA 60.159 45.455 0.00 0.00 0.00 4.75
576 578 1.609208 AACCACATGAACAGAGCCAC 58.391 50.000 0.00 0.00 0.00 5.01
577 579 0.603707 ACCACATGAACAGAGCCACG 60.604 55.000 0.00 0.00 0.00 4.94
578 580 0.320683 CCACATGAACAGAGCCACGA 60.321 55.000 0.00 0.00 0.00 4.35
579 581 1.511850 CACATGAACAGAGCCACGAA 58.488 50.000 0.00 0.00 0.00 3.85
580 582 1.872952 CACATGAACAGAGCCACGAAA 59.127 47.619 0.00 0.00 0.00 3.46
581 583 2.485426 CACATGAACAGAGCCACGAAAT 59.515 45.455 0.00 0.00 0.00 2.17
582 584 3.684305 CACATGAACAGAGCCACGAAATA 59.316 43.478 0.00 0.00 0.00 1.40
583 585 4.333649 CACATGAACAGAGCCACGAAATAT 59.666 41.667 0.00 0.00 0.00 1.28
584 586 4.333649 ACATGAACAGAGCCACGAAATATG 59.666 41.667 0.00 0.00 0.00 1.78
585 587 3.270027 TGAACAGAGCCACGAAATATGG 58.730 45.455 0.00 0.00 40.50 2.74
586 588 3.270877 GAACAGAGCCACGAAATATGGT 58.729 45.455 0.00 0.00 39.63 3.55
587 589 4.081365 TGAACAGAGCCACGAAATATGGTA 60.081 41.667 0.00 0.00 39.63 3.25
588 590 4.689612 ACAGAGCCACGAAATATGGTAT 57.310 40.909 0.00 0.00 39.63 2.73
589 591 4.632153 ACAGAGCCACGAAATATGGTATC 58.368 43.478 0.00 0.00 39.63 2.24
590 592 4.100963 ACAGAGCCACGAAATATGGTATCA 59.899 41.667 0.00 0.00 39.63 2.15
591 593 5.056480 CAGAGCCACGAAATATGGTATCAA 58.944 41.667 0.00 0.00 39.63 2.57
592 594 5.702670 CAGAGCCACGAAATATGGTATCAAT 59.297 40.000 0.00 0.00 39.63 2.57
593 595 5.702670 AGAGCCACGAAATATGGTATCAATG 59.297 40.000 0.00 0.00 39.63 2.82
594 596 4.216257 AGCCACGAAATATGGTATCAATGC 59.784 41.667 0.00 0.00 39.63 3.56
595 597 4.615912 GCCACGAAATATGGTATCAATGCC 60.616 45.833 0.00 0.00 39.63 4.40
596 598 4.518590 CCACGAAATATGGTATCAATGCCA 59.481 41.667 2.14 2.14 46.57 4.92
597 599 5.009510 CCACGAAATATGGTATCAATGCCAA 59.990 40.000 3.84 0.00 45.66 4.52
598 600 5.914635 CACGAAATATGGTATCAATGCCAAC 59.085 40.000 3.84 0.00 45.66 3.77
609 611 5.909621 ATCAATGCCAACATAGGATATGC 57.090 39.130 0.00 0.00 34.62 3.14
620 622 9.458727 CCAACATAGGATATGCAATCTCTTATT 57.541 33.333 0.00 0.00 0.00 1.40
661 663 9.660180 GCAACAATTAGTTTGGGGAAATAAATA 57.340 29.630 0.00 0.00 38.74 1.40
684 686 5.572211 ACAAGATACAACTAAATGCATGCG 58.428 37.500 14.09 0.00 0.00 4.73
690 692 7.657354 AGATACAACTAAATGCATGCGATCTAA 59.343 33.333 14.09 0.00 0.00 2.10
707 709 5.276584 CGATCTAATTCGTGCTTTTCTCCTG 60.277 44.000 0.00 0.00 34.46 3.86
719 721 4.714632 CTTTTCTCCTGTACAAACCCTGA 58.285 43.478 0.00 0.00 0.00 3.86
734 736 6.015772 ACAAACCCTGACATTAAATACCACAC 60.016 38.462 0.00 0.00 0.00 3.82
791 797 3.693085 GTCGGAGTATGTCAGTACAAGGA 59.307 47.826 0.00 0.00 39.58 3.36
792 798 4.338682 GTCGGAGTATGTCAGTACAAGGAT 59.661 45.833 0.00 0.00 39.58 3.24
928 1008 2.242196 CCATAGGGGAAGGAAGAAGCAA 59.758 50.000 0.00 0.00 40.01 3.91
950 1030 5.652994 AGGCAAGTAGAAGTACTCTCTTG 57.347 43.478 17.24 17.24 38.66 3.02
955 1035 6.144724 GCAAGTAGAAGTACTCTCTTGTTGTG 59.855 42.308 19.99 11.28 38.66 3.33
976 1056 2.744202 GGTATGGCAATCCTCAATAGCG 59.256 50.000 0.00 0.00 0.00 4.26
987 1067 3.321111 TCCTCAATAGCGATACAAGGACC 59.679 47.826 4.02 0.00 0.00 4.46
1086 1166 3.760738 TGAAGGTATGCAACAATGTCCA 58.239 40.909 0.00 0.00 0.00 4.02
1087 1167 3.758023 TGAAGGTATGCAACAATGTCCAG 59.242 43.478 0.00 0.00 0.00 3.86
1088 1168 2.094675 AGGTATGCAACAATGTCCAGC 58.905 47.619 0.00 0.00 0.00 4.85
1183 1263 9.443323 TTGTATACAAGCTAAACTGAATTGCTA 57.557 29.630 14.35 0.00 33.28 3.49
1184 1264 9.613428 TGTATACAAGCTAAACTGAATTGCTAT 57.387 29.630 2.20 0.00 33.28 2.97
1191 1271 1.462616 ACTGAATTGCTATTGCCGCA 58.537 45.000 0.00 0.00 38.71 5.69
1293 1373 7.856145 ATTGCAAAGTTTTAAAACATGGTGA 57.144 28.000 28.03 13.13 41.30 4.02
1374 1454 3.272334 CTACAATCAGCCGCCGCC 61.272 66.667 0.00 0.00 34.57 6.13
1599 1694 4.701651 TCCGTAGAACTTCCTCGTATGAAA 59.298 41.667 0.00 0.00 0.00 2.69
1663 1758 2.747855 GGCAACCTGGGAGCGAAG 60.748 66.667 0.00 0.00 0.00 3.79
1687 1782 2.862223 GCTACTGGCTAGGCTCCCG 61.862 68.421 18.18 5.96 38.06 5.14
1826 1935 4.762251 AGTTTCTTGGCTGGTTGATAAGTC 59.238 41.667 0.00 0.00 0.00 3.01
1843 1952 3.266510 AGTCGCTTGAATGCCTGAATA 57.733 42.857 0.00 0.00 0.00 1.75
1844 1953 2.939103 AGTCGCTTGAATGCCTGAATAC 59.061 45.455 0.00 0.00 0.00 1.89
1855 1964 0.528924 CCTGAATACACCACCGACGA 59.471 55.000 0.00 0.00 0.00 4.20
1891 2000 3.567164 AGAAGCCATCTGTTTTGTCTGTG 59.433 43.478 0.00 0.00 36.88 3.66
1899 2008 3.256879 TCTGTTTTGTCTGTGGTGCAAAA 59.743 39.130 0.00 0.00 39.03 2.44
1926 2035 2.762327 CCCAATGACCAATCTTCCCTTG 59.238 50.000 0.00 0.00 0.00 3.61
1947 2056 7.415206 CCCTTGTACTGTTCAATAAACCTATGC 60.415 40.741 0.22 0.00 37.03 3.14
1961 2070 8.919777 ATAAACCTATGCTCCAAAGTATAACC 57.080 34.615 0.00 0.00 30.83 2.85
1965 2074 6.828785 ACCTATGCTCCAAAGTATAACCTTTG 59.171 38.462 8.26 8.26 46.98 2.77
1982 3873 0.988832 TTGGCGTAAGGAGGGTGAAT 59.011 50.000 0.00 0.00 38.28 2.57
1990 3881 0.407139 AGGAGGGTGAATTGCAAGCT 59.593 50.000 4.94 0.00 0.00 3.74
1991 3882 1.635487 AGGAGGGTGAATTGCAAGCTA 59.365 47.619 4.94 0.00 0.00 3.32
1992 3883 1.745653 GGAGGGTGAATTGCAAGCTAC 59.254 52.381 4.94 3.27 0.00 3.58
1993 3884 2.619074 GGAGGGTGAATTGCAAGCTACT 60.619 50.000 4.94 0.00 0.00 2.57
1994 3885 2.421424 GAGGGTGAATTGCAAGCTACTG 59.579 50.000 4.94 0.00 0.00 2.74
1995 3886 1.135286 GGGTGAATTGCAAGCTACTGC 60.135 52.381 4.94 3.32 42.95 4.40
2002 3893 3.761481 GCAAGCTACTGCAACAGTG 57.239 52.632 10.42 2.34 45.01 3.66
2062 3953 1.602311 CTGTATCCAATCTGGCCTGC 58.398 55.000 3.32 0.00 37.47 4.85
2079 3970 1.298157 TGCAAACTGGAATCGCTCGG 61.298 55.000 0.00 0.00 0.00 4.63
2088 3979 1.533731 GGAATCGCTCGGTGTTTCAAA 59.466 47.619 9.14 0.00 0.00 2.69
2102 3993 4.620184 GTGTTTCAAATTGATGAGCTCTGC 59.380 41.667 16.19 7.35 0.00 4.26
2143 4036 3.306019 CCCCATTCTTGGTTTGTTGCTAC 60.306 47.826 0.00 0.00 41.91 3.58
2156 4049 2.222027 GTTGCTACTGCTTGTTGGACT 58.778 47.619 0.00 0.00 40.48 3.85
2183 4076 7.063662 GGTTGGTTGTTTTATTTATAAAGCGGG 59.936 37.037 3.94 0.00 36.59 6.13
2185 4078 5.521010 GGTTGTTTTATTTATAAAGCGGGGC 59.479 40.000 3.94 0.00 36.59 5.80
2186 4079 5.916661 TGTTTTATTTATAAAGCGGGGCA 57.083 34.783 3.94 0.00 36.59 5.36
2195 4088 2.736531 AGCGGGGCAAAAGCTTTG 59.263 55.556 13.54 8.26 38.13 2.77
2225 4170 5.910614 TGGTAGATCTGATGTGAGTTGATG 58.089 41.667 5.18 0.00 0.00 3.07
2254 4199 6.660949 AGTTAAGTTGCAAAGGCTCTTATCAT 59.339 34.615 0.00 0.00 41.91 2.45
2272 4217 8.455682 TCTTATCATCGGTCAAAATGGTAAAAC 58.544 33.333 0.00 0.00 30.29 2.43
2289 4234 2.125350 CGGCCTCTCTGAAGGTGC 60.125 66.667 0.00 0.00 38.79 5.01
2306 4251 1.210155 GCTGACGCCATTTGTCCAC 59.790 57.895 0.00 0.00 35.46 4.02
2308 4253 0.888736 CTGACGCCATTTGTCCACCA 60.889 55.000 0.00 0.00 35.46 4.17
2319 4264 0.327924 TGTCCACCACCATGATCACC 59.672 55.000 0.00 0.00 0.00 4.02
2324 4269 0.036388 ACCACCATGATCACCGTGAC 60.036 55.000 20.44 0.00 33.60 3.67
2327 4272 1.733912 CACCATGATCACCGTGACAAG 59.266 52.381 15.74 1.98 33.60 3.16
2370 4315 3.118884 GCTTGCAATTCATGACTCCCAAT 60.119 43.478 0.00 0.00 0.00 3.16
2411 4356 1.400494 GGATGACCACGCCACATTAAC 59.600 52.381 0.00 0.00 35.97 2.01
2415 4360 1.231958 ACCACGCCACATTAACACCG 61.232 55.000 0.00 0.00 0.00 4.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.148423 GGAATAAACAAATCTTTCATGGCCAAC 60.148 37.037 10.96 0.00 0.00 3.77
1 2 6.878389 GGAATAAACAAATCTTTCATGGCCAA 59.122 34.615 10.96 0.00 0.00 4.52
2 3 6.405538 GGAATAAACAAATCTTTCATGGCCA 58.594 36.000 8.56 8.56 0.00 5.36
3 4 5.519927 CGGAATAAACAAATCTTTCATGGCC 59.480 40.000 0.00 0.00 0.00 5.36
4 5 6.099341 ACGGAATAAACAAATCTTTCATGGC 58.901 36.000 0.00 0.00 0.00 4.40
5 6 7.538575 AGACGGAATAAACAAATCTTTCATGG 58.461 34.615 0.00 0.00 0.00 3.66
6 7 8.970691 AAGACGGAATAAACAAATCTTTCATG 57.029 30.769 0.00 0.00 0.00 3.07
7 8 9.981114 AAAAGACGGAATAAACAAATCTTTCAT 57.019 25.926 0.00 0.00 34.66 2.57
8 9 9.243637 CAAAAGACGGAATAAACAAATCTTTCA 57.756 29.630 0.00 0.00 34.66 2.69
9 10 8.214472 GCAAAAGACGGAATAAACAAATCTTTC 58.786 33.333 0.00 0.00 34.66 2.62
10 11 7.170828 GGCAAAAGACGGAATAAACAAATCTTT 59.829 33.333 0.00 0.00 36.69 2.52
11 12 6.645003 GGCAAAAGACGGAATAAACAAATCTT 59.355 34.615 0.00 0.00 0.00 2.40
12 13 6.156519 GGCAAAAGACGGAATAAACAAATCT 58.843 36.000 0.00 0.00 0.00 2.40
13 14 5.347635 GGGCAAAAGACGGAATAAACAAATC 59.652 40.000 0.00 0.00 0.00 2.17
14 15 5.011635 AGGGCAAAAGACGGAATAAACAAAT 59.988 36.000 0.00 0.00 0.00 2.32
15 16 4.342665 AGGGCAAAAGACGGAATAAACAAA 59.657 37.500 0.00 0.00 0.00 2.83
16 17 3.892588 AGGGCAAAAGACGGAATAAACAA 59.107 39.130 0.00 0.00 0.00 2.83
17 18 3.492337 AGGGCAAAAGACGGAATAAACA 58.508 40.909 0.00 0.00 0.00 2.83
18 19 4.514781 AAGGGCAAAAGACGGAATAAAC 57.485 40.909 0.00 0.00 0.00 2.01
19 20 6.005198 TCTTAAGGGCAAAAGACGGAATAAA 58.995 36.000 1.85 0.00 0.00 1.40
20 21 5.413523 GTCTTAAGGGCAAAAGACGGAATAA 59.586 40.000 1.85 0.00 41.43 1.40
21 22 4.939439 GTCTTAAGGGCAAAAGACGGAATA 59.061 41.667 1.85 0.00 41.43 1.75
22 23 3.756963 GTCTTAAGGGCAAAAGACGGAAT 59.243 43.478 1.85 0.00 41.43 3.01
23 24 3.143728 GTCTTAAGGGCAAAAGACGGAA 58.856 45.455 1.85 0.00 41.43 4.30
24 25 2.774687 GTCTTAAGGGCAAAAGACGGA 58.225 47.619 1.85 0.00 41.43 4.69
28 29 3.818773 CGAAAGGTCTTAAGGGCAAAAGA 59.181 43.478 1.85 0.00 0.00 2.52
29 30 3.818773 TCGAAAGGTCTTAAGGGCAAAAG 59.181 43.478 1.85 0.00 0.00 2.27
30 31 3.822940 TCGAAAGGTCTTAAGGGCAAAA 58.177 40.909 1.85 0.00 0.00 2.44
31 32 3.495434 TCGAAAGGTCTTAAGGGCAAA 57.505 42.857 1.85 0.00 0.00 3.68
32 33 3.606687 GATCGAAAGGTCTTAAGGGCAA 58.393 45.455 1.85 0.00 38.50 4.52
33 34 2.418197 CGATCGAAAGGTCTTAAGGGCA 60.418 50.000 10.26 0.00 39.71 5.36
34 35 2.202566 CGATCGAAAGGTCTTAAGGGC 58.797 52.381 10.26 0.00 39.71 5.19
35 36 2.822764 CCGATCGAAAGGTCTTAAGGG 58.177 52.381 18.66 0.00 39.71 3.95
36 37 2.159085 AGCCGATCGAAAGGTCTTAAGG 60.159 50.000 18.66 0.00 39.71 2.69
37 38 3.166489 AGCCGATCGAAAGGTCTTAAG 57.834 47.619 18.66 0.00 39.71 1.85
38 39 3.490419 GCTAGCCGATCGAAAGGTCTTAA 60.490 47.826 18.66 0.00 39.71 1.85
39 40 2.034305 GCTAGCCGATCGAAAGGTCTTA 59.966 50.000 18.66 0.00 39.71 2.10
40 41 1.202428 GCTAGCCGATCGAAAGGTCTT 60.202 52.381 18.66 0.00 39.71 3.01
41 42 0.386113 GCTAGCCGATCGAAAGGTCT 59.614 55.000 18.66 6.01 39.71 3.85
42 43 0.935366 CGCTAGCCGATCGAAAGGTC 60.935 60.000 18.66 0.00 40.02 3.85
43 44 1.065928 CGCTAGCCGATCGAAAGGT 59.934 57.895 18.66 8.28 40.02 3.50
44 45 1.661821 CCGCTAGCCGATCGAAAGG 60.662 63.158 18.66 7.12 40.02 3.11
45 46 2.303676 GCCGCTAGCCGATCGAAAG 61.304 63.158 18.66 11.51 40.02 2.62
46 47 2.279252 GCCGCTAGCCGATCGAAA 60.279 61.111 18.66 0.00 40.02 3.46
55 56 3.198489 GCAGAACAGGCCGCTAGC 61.198 66.667 4.06 4.06 42.60 3.42
56 57 2.512515 GGCAGAACAGGCCGCTAG 60.513 66.667 0.00 0.00 42.39 3.42
72 73 3.005540 GCTGAAAATGGCCCGGTGG 62.006 63.158 0.00 0.00 0.00 4.61
73 74 2.573340 GCTGAAAATGGCCCGGTG 59.427 61.111 0.00 0.00 0.00 4.94
74 75 2.679996 GGCTGAAAATGGCCCGGT 60.680 61.111 0.00 0.00 42.30 5.28
79 80 0.681175 AACCACTGGCTGAAAATGGC 59.319 50.000 0.00 0.00 33.46 4.40
80 81 2.242043 AGAACCACTGGCTGAAAATGG 58.758 47.619 0.00 0.00 36.46 3.16
81 82 5.183713 TGAATAGAACCACTGGCTGAAAATG 59.816 40.000 0.00 0.00 0.00 2.32
82 83 5.324409 TGAATAGAACCACTGGCTGAAAAT 58.676 37.500 0.00 0.00 0.00 1.82
83 84 4.724399 TGAATAGAACCACTGGCTGAAAA 58.276 39.130 0.00 0.00 0.00 2.29
84 85 4.365514 TGAATAGAACCACTGGCTGAAA 57.634 40.909 0.00 0.00 0.00 2.69
85 86 4.517285 GATGAATAGAACCACTGGCTGAA 58.483 43.478 0.00 0.00 0.00 3.02
86 87 3.118261 GGATGAATAGAACCACTGGCTGA 60.118 47.826 0.00 0.00 0.00 4.26
87 88 3.209410 GGATGAATAGAACCACTGGCTG 58.791 50.000 0.00 0.00 0.00 4.85
88 89 2.173569 GGGATGAATAGAACCACTGGCT 59.826 50.000 0.00 0.00 0.00 4.75
89 90 2.092429 TGGGATGAATAGAACCACTGGC 60.092 50.000 0.00 0.00 0.00 4.85
90 91 3.931907 TGGGATGAATAGAACCACTGG 57.068 47.619 0.00 0.00 0.00 4.00
91 92 7.013655 CCTTTAATGGGATGAATAGAACCACTG 59.986 40.741 0.00 0.00 33.42 3.66
92 93 7.062957 CCTTTAATGGGATGAATAGAACCACT 58.937 38.462 0.00 0.00 33.42 4.00
93 94 6.239036 GCCTTTAATGGGATGAATAGAACCAC 60.239 42.308 9.30 0.00 33.42 4.16
94 95 5.833131 GCCTTTAATGGGATGAATAGAACCA 59.167 40.000 9.30 0.00 35.39 3.67
95 96 5.243954 GGCCTTTAATGGGATGAATAGAACC 59.756 44.000 9.30 0.00 0.00 3.62
96 97 5.243954 GGGCCTTTAATGGGATGAATAGAAC 59.756 44.000 0.84 0.00 0.00 3.01
97 98 5.103301 TGGGCCTTTAATGGGATGAATAGAA 60.103 40.000 4.53 0.00 0.00 2.10
98 99 4.418526 TGGGCCTTTAATGGGATGAATAGA 59.581 41.667 4.53 0.00 0.00 1.98
99 100 4.739793 TGGGCCTTTAATGGGATGAATAG 58.260 43.478 4.53 0.00 0.00 1.73
100 101 4.823364 TGGGCCTTTAATGGGATGAATA 57.177 40.909 4.53 0.00 0.00 1.75
101 102 3.704545 TGGGCCTTTAATGGGATGAAT 57.295 42.857 4.53 0.00 0.00 2.57
102 103 3.052262 TCATGGGCCTTTAATGGGATGAA 60.052 43.478 4.53 0.00 0.00 2.57
103 104 2.517553 TCATGGGCCTTTAATGGGATGA 59.482 45.455 4.53 0.00 0.00 2.92
104 105 2.961510 TCATGGGCCTTTAATGGGATG 58.038 47.619 4.53 0.00 0.00 3.51
105 106 3.704545 TTCATGGGCCTTTAATGGGAT 57.295 42.857 4.53 0.00 0.00 3.85
106 107 3.481559 TTTCATGGGCCTTTAATGGGA 57.518 42.857 4.53 0.00 0.00 4.37
107 108 3.969312 AGATTTCATGGGCCTTTAATGGG 59.031 43.478 4.53 0.54 0.00 4.00
108 109 5.619132 AAGATTTCATGGGCCTTTAATGG 57.381 39.130 4.53 2.98 0.00 3.16
109 110 5.818857 CCAAAGATTTCATGGGCCTTTAATG 59.181 40.000 4.53 0.00 0.00 1.90
110 111 5.104402 CCCAAAGATTTCATGGGCCTTTAAT 60.104 40.000 4.53 0.56 46.77 1.40
111 112 4.224818 CCCAAAGATTTCATGGGCCTTTAA 59.775 41.667 4.53 0.00 46.77 1.52
112 113 3.774216 CCCAAAGATTTCATGGGCCTTTA 59.226 43.478 4.53 0.00 46.77 1.85
113 114 2.573009 CCCAAAGATTTCATGGGCCTTT 59.427 45.455 4.53 0.00 46.77 3.11
114 115 2.190538 CCCAAAGATTTCATGGGCCTT 58.809 47.619 4.53 0.00 46.77 4.35
115 116 1.870064 CCCAAAGATTTCATGGGCCT 58.130 50.000 4.53 0.00 46.77 5.19
119 120 4.022416 TGAAACGACCCAAAGATTTCATGG 60.022 41.667 0.00 0.00 35.05 3.66
120 121 5.119931 TGAAACGACCCAAAGATTTCATG 57.880 39.130 0.00 0.00 35.05 3.07
121 122 5.534654 TCTTGAAACGACCCAAAGATTTCAT 59.465 36.000 0.00 0.00 38.64 2.57
122 123 4.884744 TCTTGAAACGACCCAAAGATTTCA 59.115 37.500 0.00 0.00 37.47 2.69
123 124 5.212934 GTCTTGAAACGACCCAAAGATTTC 58.787 41.667 0.00 0.00 0.00 2.17
124 125 4.037565 GGTCTTGAAACGACCCAAAGATTT 59.962 41.667 0.00 0.00 44.08 2.17
125 126 3.568430 GGTCTTGAAACGACCCAAAGATT 59.432 43.478 0.00 0.00 44.08 2.40
126 127 3.146847 GGTCTTGAAACGACCCAAAGAT 58.853 45.455 0.00 0.00 44.08 2.40
127 128 2.567985 GGTCTTGAAACGACCCAAAGA 58.432 47.619 0.00 0.00 44.08 2.52
128 129 1.263217 CGGTCTTGAAACGACCCAAAG 59.737 52.381 3.82 0.00 46.48 2.77
129 130 1.301423 CGGTCTTGAAACGACCCAAA 58.699 50.000 3.82 0.00 46.48 3.28
130 131 0.178533 ACGGTCTTGAAACGACCCAA 59.821 50.000 3.82 0.00 46.48 4.12
131 132 1.039068 TACGGTCTTGAAACGACCCA 58.961 50.000 3.82 0.00 46.48 4.51
132 133 1.269726 TGTACGGTCTTGAAACGACCC 60.270 52.381 3.82 0.00 46.48 4.46
133 134 2.138596 TGTACGGTCTTGAAACGACC 57.861 50.000 0.00 0.00 45.88 4.79
134 135 4.025480 ACAAATGTACGGTCTTGAAACGAC 60.025 41.667 0.00 0.00 0.00 4.34
135 136 4.121317 ACAAATGTACGGTCTTGAAACGA 58.879 39.130 0.00 0.00 0.00 3.85
136 137 4.451557 GACAAATGTACGGTCTTGAAACG 58.548 43.478 0.00 0.00 0.00 3.60
137 138 4.319984 GGGACAAATGTACGGTCTTGAAAC 60.320 45.833 6.71 0.00 0.00 2.78
138 139 3.816523 GGGACAAATGTACGGTCTTGAAA 59.183 43.478 6.71 0.00 0.00 2.69
139 140 3.181453 TGGGACAAATGTACGGTCTTGAA 60.181 43.478 6.71 0.00 31.92 2.69
140 141 2.369203 TGGGACAAATGTACGGTCTTGA 59.631 45.455 6.71 0.00 31.92 3.02
141 142 2.773487 TGGGACAAATGTACGGTCTTG 58.227 47.619 6.71 2.05 31.92 3.02
156 157 9.586435 GCATAATTGGCTATTAATTAATGGGAC 57.414 33.333 18.98 14.07 34.67 4.46
157 158 8.757877 GGCATAATTGGCTATTAATTAATGGGA 58.242 33.333 18.98 0.58 44.68 4.37
158 159 8.947055 GGCATAATTGGCTATTAATTAATGGG 57.053 34.615 18.98 12.80 44.68 4.00
173 174 8.862325 TTAATACAGACCATAGGCATAATTGG 57.138 34.615 0.00 0.00 35.31 3.16
174 175 8.454106 GCTTAATACAGACCATAGGCATAATTG 58.546 37.037 0.00 0.00 0.00 2.32
175 176 7.611855 GGCTTAATACAGACCATAGGCATAATT 59.388 37.037 0.00 0.00 0.00 1.40
176 177 7.112779 GGCTTAATACAGACCATAGGCATAAT 58.887 38.462 0.00 0.00 0.00 1.28
177 178 6.472887 GGCTTAATACAGACCATAGGCATAA 58.527 40.000 0.00 0.00 0.00 1.90
178 179 5.045869 GGGCTTAATACAGACCATAGGCATA 60.046 44.000 0.00 0.00 42.48 3.14
179 180 4.263506 GGGCTTAATACAGACCATAGGCAT 60.264 45.833 0.00 0.00 42.48 4.40
180 181 3.072476 GGGCTTAATACAGACCATAGGCA 59.928 47.826 0.00 0.00 42.48 4.75
181 182 3.676093 GGGCTTAATACAGACCATAGGC 58.324 50.000 0.00 0.00 42.48 3.93
187 188 4.074970 CCATCATGGGCTTAATACAGACC 58.925 47.826 0.00 0.00 43.39 3.85
200 201 3.122850 GCGGAAAGCCATCATGGG 58.877 61.111 5.62 0.00 38.19 4.00
210 211 5.560966 ATGTGTTGTTAATAGGCGGAAAG 57.439 39.130 0.00 0.00 0.00 2.62
211 212 5.968528 AATGTGTTGTTAATAGGCGGAAA 57.031 34.783 0.00 0.00 0.00 3.13
212 213 6.600032 ACATAATGTGTTGTTAATAGGCGGAA 59.400 34.615 0.00 0.00 38.01 4.30
213 214 6.037720 CACATAATGTGTTGTTAATAGGCGGA 59.962 38.462 0.00 0.00 43.08 5.54
214 215 6.198687 CACATAATGTGTTGTTAATAGGCGG 58.801 40.000 0.00 0.00 43.08 6.13
229 230 4.888326 AATGGGCACAAACACATAATGT 57.112 36.364 0.00 0.00 46.42 2.71
230 231 4.805192 GCTAATGGGCACAAACACATAATG 59.195 41.667 0.00 0.00 0.00 1.90
231 232 4.439974 CGCTAATGGGCACAAACACATAAT 60.440 41.667 0.00 0.00 0.00 1.28
246 247 1.735360 CACAATGGCCCGCTAATGG 59.265 57.895 0.00 0.00 0.00 3.16
274 275 1.403679 ACACAACATGGTCCACAAACG 59.596 47.619 0.00 0.00 0.00 3.60
283 284 4.817318 AAGGTTCAAAACACAACATGGT 57.183 36.364 0.00 0.00 0.00 3.55
315 316 5.849510 CCACTAATGGGTCGTATAACATCA 58.150 41.667 0.00 0.00 43.04 3.07
340 341 1.000731 ACGGGCCAAAACATGACATTG 59.999 47.619 4.39 1.27 0.00 2.82
341 342 1.337118 ACGGGCCAAAACATGACATT 58.663 45.000 4.39 0.00 0.00 2.71
346 347 1.555741 CGCAAACGGGCCAAAACATG 61.556 55.000 4.39 0.00 34.97 3.21
365 366 3.076258 GCCGCAATAACCTTGGGCC 62.076 63.158 0.00 0.00 32.93 5.80
366 367 2.494445 GCCGCAATAACCTTGGGC 59.506 61.111 0.00 0.00 0.00 5.36
370 371 2.238521 CATATGGGCCGCAATAACCTT 58.761 47.619 0.00 0.00 0.00 3.50
405 406 7.329226 CCGTGCATTTATTTCAAGTTTCTCATT 59.671 33.333 0.00 0.00 0.00 2.57
429 430 2.737783 TGCAAGATAACCGTTTGTACCG 59.262 45.455 0.00 0.00 0.00 4.02
467 468 9.299963 CACATCTCTTGTATTTGTTTTTGTTGA 57.700 29.630 0.00 0.00 36.57 3.18
523 525 7.936847 TGTCATACTCTGCCTTTTCTCTAAAAA 59.063 33.333 0.00 0.00 34.26 1.94
524 526 7.450074 TGTCATACTCTGCCTTTTCTCTAAAA 58.550 34.615 0.00 0.00 33.58 1.52
525 527 7.004555 TGTCATACTCTGCCTTTTCTCTAAA 57.995 36.000 0.00 0.00 0.00 1.85
526 528 6.605471 TGTCATACTCTGCCTTTTCTCTAA 57.395 37.500 0.00 0.00 0.00 2.10
527 529 6.437477 TCTTGTCATACTCTGCCTTTTCTCTA 59.563 38.462 0.00 0.00 0.00 2.43
528 530 5.247110 TCTTGTCATACTCTGCCTTTTCTCT 59.753 40.000 0.00 0.00 0.00 3.10
529 531 5.350091 GTCTTGTCATACTCTGCCTTTTCTC 59.650 44.000 0.00 0.00 0.00 2.87
530 532 5.221722 TGTCTTGTCATACTCTGCCTTTTCT 60.222 40.000 0.00 0.00 0.00 2.52
531 533 4.997395 TGTCTTGTCATACTCTGCCTTTTC 59.003 41.667 0.00 0.00 0.00 2.29
532 534 4.973168 TGTCTTGTCATACTCTGCCTTTT 58.027 39.130 0.00 0.00 0.00 2.27
533 535 4.284490 TCTGTCTTGTCATACTCTGCCTTT 59.716 41.667 0.00 0.00 0.00 3.11
534 536 3.834813 TCTGTCTTGTCATACTCTGCCTT 59.165 43.478 0.00 0.00 0.00 4.35
535 537 3.435275 TCTGTCTTGTCATACTCTGCCT 58.565 45.455 0.00 0.00 0.00 4.75
536 538 3.876274 TCTGTCTTGTCATACTCTGCC 57.124 47.619 0.00 0.00 0.00 4.85
537 539 4.390297 GGTTTCTGTCTTGTCATACTCTGC 59.610 45.833 0.00 0.00 0.00 4.26
538 540 5.406780 GTGGTTTCTGTCTTGTCATACTCTG 59.593 44.000 0.00 0.00 0.00 3.35
539 541 5.070446 TGTGGTTTCTGTCTTGTCATACTCT 59.930 40.000 0.00 0.00 0.00 3.24
540 542 5.297547 TGTGGTTTCTGTCTTGTCATACTC 58.702 41.667 0.00 0.00 0.00 2.59
541 543 5.290493 TGTGGTTTCTGTCTTGTCATACT 57.710 39.130 0.00 0.00 0.00 2.12
542 544 5.700832 TCATGTGGTTTCTGTCTTGTCATAC 59.299 40.000 0.00 0.00 0.00 2.39
543 545 5.863965 TCATGTGGTTTCTGTCTTGTCATA 58.136 37.500 0.00 0.00 0.00 2.15
544 546 4.717877 TCATGTGGTTTCTGTCTTGTCAT 58.282 39.130 0.00 0.00 0.00 3.06
545 547 4.149511 TCATGTGGTTTCTGTCTTGTCA 57.850 40.909 0.00 0.00 0.00 3.58
546 548 4.335315 TGTTCATGTGGTTTCTGTCTTGTC 59.665 41.667 0.00 0.00 0.00 3.18
547 549 4.269183 TGTTCATGTGGTTTCTGTCTTGT 58.731 39.130 0.00 0.00 0.00 3.16
548 550 4.576053 TCTGTTCATGTGGTTTCTGTCTTG 59.424 41.667 0.00 0.00 0.00 3.02
549 551 4.780815 TCTGTTCATGTGGTTTCTGTCTT 58.219 39.130 0.00 0.00 0.00 3.01
550 552 4.384056 CTCTGTTCATGTGGTTTCTGTCT 58.616 43.478 0.00 0.00 0.00 3.41
551 553 3.058639 GCTCTGTTCATGTGGTTTCTGTC 60.059 47.826 0.00 0.00 0.00 3.51
552 554 2.880890 GCTCTGTTCATGTGGTTTCTGT 59.119 45.455 0.00 0.00 0.00 3.41
553 555 2.227388 GGCTCTGTTCATGTGGTTTCTG 59.773 50.000 0.00 0.00 0.00 3.02
554 556 2.158623 TGGCTCTGTTCATGTGGTTTCT 60.159 45.455 0.00 0.00 0.00 2.52
555 557 2.030805 GTGGCTCTGTTCATGTGGTTTC 60.031 50.000 0.00 0.00 0.00 2.78
556 558 1.956477 GTGGCTCTGTTCATGTGGTTT 59.044 47.619 0.00 0.00 0.00 3.27
557 559 1.609208 GTGGCTCTGTTCATGTGGTT 58.391 50.000 0.00 0.00 0.00 3.67
558 560 0.603707 CGTGGCTCTGTTCATGTGGT 60.604 55.000 0.00 0.00 0.00 4.16
559 561 0.320683 TCGTGGCTCTGTTCATGTGG 60.321 55.000 0.00 0.00 0.00 4.17
560 562 1.511850 TTCGTGGCTCTGTTCATGTG 58.488 50.000 0.00 0.00 0.00 3.21
561 563 2.254546 TTTCGTGGCTCTGTTCATGT 57.745 45.000 0.00 0.00 0.00 3.21
562 564 4.260907 CCATATTTCGTGGCTCTGTTCATG 60.261 45.833 0.00 0.00 0.00 3.07
563 565 3.879295 CCATATTTCGTGGCTCTGTTCAT 59.121 43.478 0.00 0.00 0.00 2.57
564 566 3.270027 CCATATTTCGTGGCTCTGTTCA 58.730 45.455 0.00 0.00 0.00 3.18
565 567 3.270877 ACCATATTTCGTGGCTCTGTTC 58.729 45.455 0.00 0.00 40.49 3.18
566 568 3.350219 ACCATATTTCGTGGCTCTGTT 57.650 42.857 0.00 0.00 40.49 3.16
567 569 4.100963 TGATACCATATTTCGTGGCTCTGT 59.899 41.667 0.00 0.00 40.49 3.41
568 570 4.631131 TGATACCATATTTCGTGGCTCTG 58.369 43.478 0.00 0.00 40.49 3.35
569 571 4.955811 TGATACCATATTTCGTGGCTCT 57.044 40.909 0.00 0.00 40.49 4.09
570 572 5.617751 GCATTGATACCATATTTCGTGGCTC 60.618 44.000 0.00 0.00 40.49 4.70
571 573 4.216257 GCATTGATACCATATTTCGTGGCT 59.784 41.667 0.00 0.00 40.49 4.75
572 574 4.475944 GCATTGATACCATATTTCGTGGC 58.524 43.478 0.00 0.00 40.49 5.01
573 575 4.518590 TGGCATTGATACCATATTTCGTGG 59.481 41.667 0.00 0.00 42.55 4.94
574 576 5.687770 TGGCATTGATACCATATTTCGTG 57.312 39.130 0.00 0.00 0.00 4.35
575 577 5.592282 TGTTGGCATTGATACCATATTTCGT 59.408 36.000 0.00 0.00 35.42 3.85
576 578 6.070897 TGTTGGCATTGATACCATATTTCG 57.929 37.500 0.00 0.00 35.42 3.46
577 579 8.246180 CCTATGTTGGCATTGATACCATATTTC 58.754 37.037 0.00 0.00 35.42 2.17
578 580 7.949565 TCCTATGTTGGCATTGATACCATATTT 59.050 33.333 0.00 0.00 35.42 1.40
579 581 7.469343 TCCTATGTTGGCATTGATACCATATT 58.531 34.615 0.00 0.00 35.42 1.28
580 582 7.031415 TCCTATGTTGGCATTGATACCATAT 57.969 36.000 0.00 0.00 35.42 1.78
581 583 6.446909 TCCTATGTTGGCATTGATACCATA 57.553 37.500 0.00 0.00 35.42 2.74
582 584 5.323382 TCCTATGTTGGCATTGATACCAT 57.677 39.130 0.00 0.00 35.42 3.55
583 585 4.787135 TCCTATGTTGGCATTGATACCA 57.213 40.909 0.00 0.00 36.58 3.25
584 586 6.183360 GCATATCCTATGTTGGCATTGATACC 60.183 42.308 0.00 0.00 33.98 2.73
585 587 6.375174 TGCATATCCTATGTTGGCATTGATAC 59.625 38.462 0.00 0.00 33.98 2.24
586 588 6.483405 TGCATATCCTATGTTGGCATTGATA 58.517 36.000 0.00 0.00 36.58 2.15
587 589 5.326900 TGCATATCCTATGTTGGCATTGAT 58.673 37.500 0.00 0.00 36.58 2.57
588 590 4.727677 TGCATATCCTATGTTGGCATTGA 58.272 39.130 0.00 0.00 36.58 2.57
589 591 5.456548 TTGCATATCCTATGTTGGCATTG 57.543 39.130 0.00 0.00 36.58 2.82
590 592 6.014647 AGATTGCATATCCTATGTTGGCATT 58.985 36.000 0.00 0.00 36.58 3.56
591 593 5.577100 AGATTGCATATCCTATGTTGGCAT 58.423 37.500 0.00 0.00 39.03 4.40
592 594 4.989277 AGATTGCATATCCTATGTTGGCA 58.011 39.130 0.00 0.00 0.00 4.92
593 595 5.251764 AGAGATTGCATATCCTATGTTGGC 58.748 41.667 0.00 0.00 0.00 4.52
594 596 9.458727 AATAAGAGATTGCATATCCTATGTTGG 57.541 33.333 0.00 0.00 0.00 3.77
630 632 3.119137 CCCCAAACTAATTGTTGCTAGGC 60.119 47.826 0.00 0.00 39.13 3.93
631 633 4.340617 TCCCCAAACTAATTGTTGCTAGG 58.659 43.478 0.00 0.00 39.13 3.02
661 663 5.353956 TCGCATGCATTTAGTTGTATCTTGT 59.646 36.000 19.57 0.00 0.00 3.16
665 667 6.233430 AGATCGCATGCATTTAGTTGTATC 57.767 37.500 19.57 4.40 0.00 2.24
668 670 6.624352 ATTAGATCGCATGCATTTAGTTGT 57.376 33.333 19.57 0.00 0.00 3.32
674 676 4.530388 CACGAATTAGATCGCATGCATTT 58.470 39.130 19.57 8.25 46.51 2.32
684 686 5.582665 ACAGGAGAAAAGCACGAATTAGATC 59.417 40.000 0.00 0.00 0.00 2.75
690 692 4.002906 TGTACAGGAGAAAAGCACGAAT 57.997 40.909 0.00 0.00 0.00 3.34
707 709 7.175293 TGTGGTATTTAATGTCAGGGTTTGTAC 59.825 37.037 0.00 0.00 0.00 2.90
760 766 5.006153 TGACATACTCCGACCTTTGTATG 57.994 43.478 9.53 9.53 44.37 2.39
764 770 3.594603 ACTGACATACTCCGACCTTTG 57.405 47.619 0.00 0.00 0.00 2.77
928 1008 5.081032 ACAAGAGAGTACTTCTACTTGCCT 58.919 41.667 20.94 4.19 40.67 4.75
950 1030 2.722094 TGAGGATTGCCATACCACAAC 58.278 47.619 0.00 0.00 36.29 3.32
955 1035 2.744202 CGCTATTGAGGATTGCCATACC 59.256 50.000 0.00 0.00 33.64 2.73
976 1056 5.116882 GGTGTAGACAATGGTCCTTGTATC 58.883 45.833 0.00 3.10 45.48 2.24
987 1067 1.016627 CCGCCATGGTGTAGACAATG 58.983 55.000 23.44 0.19 33.67 2.82
1086 1166 6.228258 TGGAAATCGTAGAGTAAAACAAGCT 58.772 36.000 0.00 0.00 43.63 3.74
1087 1167 6.476243 TGGAAATCGTAGAGTAAAACAAGC 57.524 37.500 0.00 0.00 43.63 4.01
1088 1168 8.339714 TGTTTGGAAATCGTAGAGTAAAACAAG 58.660 33.333 0.00 0.00 43.63 3.16
1183 1263 7.495279 ACAAATGAATTACATTATTGCGGCAAT 59.505 29.630 28.91 28.91 46.90 3.56
1184 1264 6.815641 ACAAATGAATTACATTATTGCGGCAA 59.184 30.769 18.85 18.85 46.90 4.52
1192 1272 9.799106 CCCTCCTCTACAAATGAATTACATTAT 57.201 33.333 0.00 0.00 46.90 1.28
1193 1273 8.778059 ACCCTCCTCTACAAATGAATTACATTA 58.222 33.333 0.00 0.00 46.90 1.90
1293 1373 5.994250 ACATGATACTGTAAGCATGACCTT 58.006 37.500 26.75 11.85 40.29 3.50
1374 1454 2.656651 CGAGATCTCTTGGCGGCG 60.657 66.667 20.26 0.51 0.00 6.46
1375 1455 1.880340 CACGAGATCTCTTGGCGGC 60.880 63.158 20.26 0.00 0.00 6.53
1376 1456 1.880340 GCACGAGATCTCTTGGCGG 60.880 63.158 25.57 10.64 30.53 6.13
1669 1764 2.862223 CGGGAGCCTAGCCAGTAGC 61.862 68.421 0.00 0.00 44.25 3.58
1687 1782 1.683418 GATAGGGGACGGGTGTGGAC 61.683 65.000 0.00 0.00 0.00 4.02
1826 1935 2.223340 GGTGTATTCAGGCATTCAAGCG 60.223 50.000 0.00 0.00 34.64 4.68
1843 1952 0.524862 GATAGTGTCGTCGGTGGTGT 59.475 55.000 0.00 0.00 0.00 4.16
1844 1953 0.524414 TGATAGTGTCGTCGGTGGTG 59.476 55.000 0.00 0.00 0.00 4.17
1855 1964 2.502947 TGGCTTCTCTGCATGATAGTGT 59.497 45.455 0.00 0.00 34.04 3.55
1891 2000 3.501828 GTCATTGGGGAAAATTTTGCACC 59.498 43.478 20.37 18.61 30.03 5.01
1899 2008 4.471025 GGAAGATTGGTCATTGGGGAAAAT 59.529 41.667 0.00 0.00 0.00 1.82
1926 2035 6.821665 TGGAGCATAGGTTTATTGAACAGTAC 59.178 38.462 0.00 0.00 40.13 2.73
1961 2070 0.323629 TCACCCTCCTTACGCCAAAG 59.676 55.000 0.00 0.00 0.00 2.77
1965 2074 1.379527 CAATTCACCCTCCTTACGCC 58.620 55.000 0.00 0.00 0.00 5.68
1966 2075 0.733150 GCAATTCACCCTCCTTACGC 59.267 55.000 0.00 0.00 0.00 4.42
1967 2076 2.107950 TGCAATTCACCCTCCTTACG 57.892 50.000 0.00 0.00 0.00 3.18
1994 3885 1.734117 GAAATGGCCGCACTGTTGC 60.734 57.895 0.00 0.00 46.21 4.17
1995 3886 0.387622 CAGAAATGGCCGCACTGTTG 60.388 55.000 0.00 0.00 0.00 3.33
1996 3887 0.823356 ACAGAAATGGCCGCACTGTT 60.823 50.000 15.47 4.51 38.41 3.16
1997 3888 0.036164 TACAGAAATGGCCGCACTGT 59.964 50.000 21.63 21.63 42.94 3.55
1998 3889 1.331756 GATACAGAAATGGCCGCACTG 59.668 52.381 14.44 14.44 35.14 3.66
1999 3890 1.065491 TGATACAGAAATGGCCGCACT 60.065 47.619 0.00 0.00 0.00 4.40
2000 3891 1.331756 CTGATACAGAAATGGCCGCAC 59.668 52.381 0.00 0.00 32.44 5.34
2001 3892 1.065491 ACTGATACAGAAATGGCCGCA 60.065 47.619 0.00 0.00 35.18 5.69
2002 3893 1.331756 CACTGATACAGAAATGGCCGC 59.668 52.381 0.00 0.00 35.18 6.53
2003 3894 2.352651 CACACTGATACAGAAATGGCCG 59.647 50.000 0.00 0.00 35.18 6.13
2004 3895 3.609853 TCACACTGATACAGAAATGGCC 58.390 45.455 0.00 0.00 35.18 5.36
2062 3953 0.443869 CACCGAGCGATTCCAGTTTG 59.556 55.000 0.00 0.00 0.00 2.93
2079 3970 4.620184 GCAGAGCTCATCAATTTGAAACAC 59.380 41.667 17.77 0.00 0.00 3.32
2088 3979 1.066645 TGTCGTGCAGAGCTCATCAAT 60.067 47.619 17.77 0.00 0.00 2.57
2143 4036 0.670162 CCAACCAGTCCAACAAGCAG 59.330 55.000 0.00 0.00 0.00 4.24
2156 4049 7.599245 CCGCTTTATAAATAAAACAACCAACCA 59.401 33.333 0.00 0.00 32.39 3.67
2185 4078 7.869429 AGATCTACCATGAAAACAAAGCTTTTG 59.131 33.333 9.53 7.95 0.00 2.44
2186 4079 7.869429 CAGATCTACCATGAAAACAAAGCTTTT 59.131 33.333 9.53 0.00 0.00 2.27
2194 4087 6.710278 TCACATCAGATCTACCATGAAAACA 58.290 36.000 13.04 0.00 0.00 2.83
2195 4088 6.820656 ACTCACATCAGATCTACCATGAAAAC 59.179 38.462 13.04 0.00 0.00 2.43
2225 4170 2.623416 AGCCTTTGCAACTTAACTGACC 59.377 45.455 0.00 0.00 41.13 4.02
2254 4199 2.030981 GCCGTTTTACCATTTTGACCGA 60.031 45.455 0.00 0.00 0.00 4.69
2272 4217 2.125350 GCACCTTCAGAGAGGCCG 60.125 66.667 0.00 0.00 40.65 6.13
2289 4234 0.888736 TGGTGGACAAATGGCGTCAG 60.889 55.000 0.00 0.00 34.97 3.51
2306 4251 0.036483 TGTCACGGTGATCATGGTGG 60.036 55.000 21.68 9.34 0.00 4.61
2308 4253 1.347707 ACTTGTCACGGTGATCATGGT 59.652 47.619 14.78 11.99 0.00 3.55
2327 4272 8.427774 GCAAGCTGTCAATTTACAAGAAATAAC 58.572 33.333 0.00 0.00 0.00 1.89
2370 4315 3.118992 CCTATCGCATATAGAGCAAGGCA 60.119 47.826 4.94 0.00 0.00 4.75


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.