Multiple sequence alignment - TraesCS6B01G013600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G013600 chr6B 100.000 2600 0 0 1 2600 8413335 8410736 0.000000e+00 4802.0
1 TraesCS6B01G013600 chr6D 87.741 1403 76 46 589 1962 4289733 4291068 0.000000e+00 1550.0
2 TraesCS6B01G013600 chr6D 92.000 575 45 1 2026 2600 4291260 4291833 0.000000e+00 806.0
3 TraesCS6B01G013600 chr6A 85.592 1402 90 54 589 1966 2748880 2750193 0.000000e+00 1367.0
4 TraesCS6B01G013600 chr6A 87.159 623 53 14 2002 2600 2750720 2751339 0.000000e+00 682.0
5 TraesCS6B01G013600 chr6A 88.757 169 13 3 173 339 2748539 2748703 4.390000e-48 202.0
6 TraesCS6B01G013600 chr1B 88.710 124 8 1 2483 2600 683111336 683111213 2.090000e-31 147.0
7 TraesCS6B01G013600 chr2B 79.888 179 20 9 170 337 525631524 525631351 1.630000e-22 117.0
8 TraesCS6B01G013600 chr1A 100.000 34 0 0 2535 2568 540666588 540666555 2.160000e-06 63.9
9 TraesCS6B01G013600 chr2D 94.872 39 1 1 525 563 542123504 542123541 2.790000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G013600 chr6B 8410736 8413335 2599 True 4802.000000 4802 100.000000 1 2600 1 chr6B.!!$R1 2599
1 TraesCS6B01G013600 chr6D 4289733 4291833 2100 False 1178.000000 1550 89.870500 589 2600 2 chr6D.!!$F1 2011
2 TraesCS6B01G013600 chr6A 2748539 2751339 2800 False 750.333333 1367 87.169333 173 2600 3 chr6A.!!$F1 2427

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
527 530 0.03779 GCACTCAGGAGTCAGGACAC 60.038 60.0 0.0 0.0 40.2 3.67 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2278 2937 0.460987 GCGGTGAGGAGGAAGATGTG 60.461 60.0 0.0 0.0 0.0 3.21 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.706339 AGGAAGAGTGGATGCATGTC 57.294 50.000 2.46 0.00 0.00 3.06
20 21 1.134580 AGGAAGAGTGGATGCATGTCG 60.135 52.381 2.46 0.00 0.00 4.35
21 22 0.654683 GAAGAGTGGATGCATGTCGC 59.345 55.000 2.46 2.73 42.89 5.19
22 23 1.086067 AAGAGTGGATGCATGTCGCG 61.086 55.000 2.46 0.00 46.97 5.87
23 24 1.519234 GAGTGGATGCATGTCGCGA 60.519 57.895 3.71 3.71 46.97 5.87
24 25 0.877649 GAGTGGATGCATGTCGCGAT 60.878 55.000 14.06 0.00 46.97 4.58
25 26 0.462581 AGTGGATGCATGTCGCGATT 60.463 50.000 14.06 0.00 46.97 3.34
26 27 0.378257 GTGGATGCATGTCGCGATTT 59.622 50.000 14.06 0.00 46.97 2.17
27 28 0.657312 TGGATGCATGTCGCGATTTC 59.343 50.000 14.06 0.00 46.97 2.17
28 29 0.657312 GGATGCATGTCGCGATTTCA 59.343 50.000 14.06 6.15 46.97 2.69
29 30 1.333524 GGATGCATGTCGCGATTTCAG 60.334 52.381 14.06 2.11 46.97 3.02
30 31 1.328680 GATGCATGTCGCGATTTCAGT 59.671 47.619 14.06 0.00 46.97 3.41
31 32 1.155889 TGCATGTCGCGATTTCAGTT 58.844 45.000 14.06 0.00 46.97 3.16
32 33 2.342179 TGCATGTCGCGATTTCAGTTA 58.658 42.857 14.06 0.00 46.97 2.24
33 34 2.093625 TGCATGTCGCGATTTCAGTTAC 59.906 45.455 14.06 0.00 46.97 2.50
34 35 2.536928 GCATGTCGCGATTTCAGTTACC 60.537 50.000 14.06 0.00 0.00 2.85
35 36 1.342555 TGTCGCGATTTCAGTTACCG 58.657 50.000 14.06 0.00 0.00 4.02
36 37 1.068402 TGTCGCGATTTCAGTTACCGA 60.068 47.619 14.06 0.00 0.00 4.69
37 38 2.190981 GTCGCGATTTCAGTTACCGAT 58.809 47.619 14.06 0.00 0.00 4.18
38 39 2.034842 GTCGCGATTTCAGTTACCGATG 60.035 50.000 14.06 0.00 0.00 3.84
39 40 2.159352 TCGCGATTTCAGTTACCGATGA 60.159 45.455 3.71 0.00 0.00 2.92
40 41 2.601314 CGCGATTTCAGTTACCGATGAA 59.399 45.455 0.00 0.00 33.73 2.57
41 42 3.245284 CGCGATTTCAGTTACCGATGAAT 59.755 43.478 0.00 0.00 35.47 2.57
42 43 4.606232 CGCGATTTCAGTTACCGATGAATC 60.606 45.833 0.00 0.00 35.47 2.52
43 44 4.508124 GCGATTTCAGTTACCGATGAATCT 59.492 41.667 0.00 0.00 35.47 2.40
44 45 5.006746 GCGATTTCAGTTACCGATGAATCTT 59.993 40.000 0.00 0.00 35.47 2.40
45 46 6.200286 GCGATTTCAGTTACCGATGAATCTTA 59.800 38.462 0.00 0.00 35.47 2.10
46 47 7.095607 GCGATTTCAGTTACCGATGAATCTTAT 60.096 37.037 0.00 0.00 35.47 1.73
47 48 8.217115 CGATTTCAGTTACCGATGAATCTTATG 58.783 37.037 0.00 0.00 35.47 1.90
48 49 8.964476 ATTTCAGTTACCGATGAATCTTATGT 57.036 30.769 0.00 0.00 35.47 2.29
49 50 8.786826 TTTCAGTTACCGATGAATCTTATGTT 57.213 30.769 0.00 0.00 35.47 2.71
50 51 8.786826 TTCAGTTACCGATGAATCTTATGTTT 57.213 30.769 0.00 0.00 30.67 2.83
51 52 8.420374 TCAGTTACCGATGAATCTTATGTTTC 57.580 34.615 0.00 0.00 0.00 2.78
52 53 7.222031 TCAGTTACCGATGAATCTTATGTTTCG 59.778 37.037 0.00 0.00 0.00 3.46
54 55 4.127171 ACCGATGAATCTTATGTTTCGGG 58.873 43.478 12.44 4.21 46.63 5.14
55 56 3.058914 CCGATGAATCTTATGTTTCGGGC 60.059 47.826 0.00 0.00 40.60 6.13
56 57 3.362986 CGATGAATCTTATGTTTCGGGCG 60.363 47.826 0.00 0.00 0.00 6.13
57 58 3.254470 TGAATCTTATGTTTCGGGCGA 57.746 42.857 0.00 0.00 0.00 5.54
58 59 3.804036 TGAATCTTATGTTTCGGGCGAT 58.196 40.909 0.00 0.00 0.00 4.58
59 60 3.559655 TGAATCTTATGTTTCGGGCGATG 59.440 43.478 0.00 0.00 0.00 3.84
60 61 1.295792 TCTTATGTTTCGGGCGATGC 58.704 50.000 0.00 0.00 0.00 3.91
71 72 2.327940 GCGATGCCATAACGCCAC 59.672 61.111 0.00 0.00 45.35 5.01
72 73 2.180204 GCGATGCCATAACGCCACT 61.180 57.895 0.00 0.00 45.35 4.00
73 74 1.643292 CGATGCCATAACGCCACTG 59.357 57.895 0.00 0.00 0.00 3.66
74 75 1.775039 CGATGCCATAACGCCACTGG 61.775 60.000 0.00 0.00 0.00 4.00
75 76 1.447317 GATGCCATAACGCCACTGGG 61.447 60.000 0.00 0.00 37.18 4.45
76 77 1.920734 ATGCCATAACGCCACTGGGA 61.921 55.000 0.00 0.00 35.59 4.37
77 78 1.819632 GCCATAACGCCACTGGGAG 60.820 63.158 0.00 0.00 40.27 4.30
78 79 1.904771 CCATAACGCCACTGGGAGA 59.095 57.895 0.00 0.00 37.43 3.71
79 80 0.251916 CCATAACGCCACTGGGAGAA 59.748 55.000 0.00 0.00 37.43 2.87
80 81 1.656652 CATAACGCCACTGGGAGAAG 58.343 55.000 0.00 0.00 37.43 2.85
81 82 0.541863 ATAACGCCACTGGGAGAAGG 59.458 55.000 0.00 0.00 37.43 3.46
82 83 1.550130 TAACGCCACTGGGAGAAGGG 61.550 60.000 0.00 0.00 37.43 3.95
83 84 3.322466 CGCCACTGGGAGAAGGGT 61.322 66.667 0.00 0.00 35.76 4.34
84 85 2.352805 GCCACTGGGAGAAGGGTG 59.647 66.667 0.00 0.00 35.59 4.61
85 86 2.224159 GCCACTGGGAGAAGGGTGA 61.224 63.158 0.00 0.00 35.59 4.02
86 87 1.986413 CCACTGGGAGAAGGGTGAG 59.014 63.158 0.00 0.00 35.59 3.51
87 88 1.557269 CCACTGGGAGAAGGGTGAGG 61.557 65.000 0.00 0.00 35.59 3.86
88 89 1.229658 ACTGGGAGAAGGGTGAGGG 60.230 63.158 0.00 0.00 0.00 4.30
89 90 1.997874 CTGGGAGAAGGGTGAGGGG 60.998 68.421 0.00 0.00 0.00 4.79
90 91 2.454941 GGGAGAAGGGTGAGGGGA 59.545 66.667 0.00 0.00 0.00 4.81
91 92 1.229853 GGGAGAAGGGTGAGGGGAA 60.230 63.158 0.00 0.00 0.00 3.97
92 93 1.275421 GGGAGAAGGGTGAGGGGAAG 61.275 65.000 0.00 0.00 0.00 3.46
93 94 0.252742 GGAGAAGGGTGAGGGGAAGA 60.253 60.000 0.00 0.00 0.00 2.87
94 95 1.657804 GAGAAGGGTGAGGGGAAGAA 58.342 55.000 0.00 0.00 0.00 2.52
95 96 1.279558 GAGAAGGGTGAGGGGAAGAAC 59.720 57.143 0.00 0.00 0.00 3.01
96 97 0.328592 GAAGGGTGAGGGGAAGAACC 59.671 60.000 0.00 0.00 38.08 3.62
109 110 2.928116 GGAAGAACCCATTTAGACGACG 59.072 50.000 0.00 0.00 0.00 5.12
110 111 3.367703 GGAAGAACCCATTTAGACGACGA 60.368 47.826 0.00 0.00 0.00 4.20
111 112 3.947910 AGAACCCATTTAGACGACGAA 57.052 42.857 0.00 0.00 0.00 3.85
112 113 3.846360 AGAACCCATTTAGACGACGAAG 58.154 45.455 0.00 0.00 0.00 3.79
113 114 2.005971 ACCCATTTAGACGACGAAGC 57.994 50.000 0.00 0.00 0.00 3.86
114 115 0.921347 CCCATTTAGACGACGAAGCG 59.079 55.000 0.00 0.00 37.29 4.68
115 116 0.297820 CCATTTAGACGACGAAGCGC 59.702 55.000 0.00 0.00 33.86 5.92
116 117 0.297820 CATTTAGACGACGAAGCGCC 59.702 55.000 2.29 0.00 33.86 6.53
117 118 0.804933 ATTTAGACGACGAAGCGCCC 60.805 55.000 2.29 0.00 33.86 6.13
118 119 2.144833 TTTAGACGACGAAGCGCCCA 62.145 55.000 2.29 0.00 33.86 5.36
119 120 2.144833 TTAGACGACGAAGCGCCCAA 62.145 55.000 2.29 0.00 33.86 4.12
120 121 2.537792 TAGACGACGAAGCGCCCAAG 62.538 60.000 2.29 0.00 33.86 3.61
124 125 4.722700 ACGAAGCGCCCAAGCCAT 62.723 61.111 2.29 0.00 38.01 4.40
125 126 2.513666 CGAAGCGCCCAAGCCATA 60.514 61.111 2.29 0.00 38.01 2.74
126 127 2.112198 CGAAGCGCCCAAGCCATAA 61.112 57.895 2.29 0.00 38.01 1.90
127 128 1.653094 CGAAGCGCCCAAGCCATAAA 61.653 55.000 2.29 0.00 38.01 1.40
128 129 0.530288 GAAGCGCCCAAGCCATAAAA 59.470 50.000 2.29 0.00 38.01 1.52
129 130 0.532115 AAGCGCCCAAGCCATAAAAG 59.468 50.000 2.29 0.00 38.01 2.27
130 131 0.323360 AGCGCCCAAGCCATAAAAGA 60.323 50.000 2.29 0.00 38.01 2.52
131 132 0.179137 GCGCCCAAGCCATAAAAGAC 60.179 55.000 0.00 0.00 34.57 3.01
132 133 1.463674 CGCCCAAGCCATAAAAGACT 58.536 50.000 0.00 0.00 34.57 3.24
133 134 2.639065 CGCCCAAGCCATAAAAGACTA 58.361 47.619 0.00 0.00 34.57 2.59
134 135 3.214328 CGCCCAAGCCATAAAAGACTAT 58.786 45.455 0.00 0.00 34.57 2.12
135 136 3.632145 CGCCCAAGCCATAAAAGACTATT 59.368 43.478 0.00 0.00 34.57 1.73
136 137 4.097892 CGCCCAAGCCATAAAAGACTATTT 59.902 41.667 0.00 0.00 34.57 1.40
137 138 5.394115 CGCCCAAGCCATAAAAGACTATTTT 60.394 40.000 0.00 0.00 34.57 1.82
138 139 6.183360 CGCCCAAGCCATAAAAGACTATTTTA 60.183 38.462 0.00 0.00 34.57 1.52
139 140 7.470009 CGCCCAAGCCATAAAAGACTATTTTAT 60.470 37.037 0.84 0.84 35.61 1.40
140 141 8.204160 GCCCAAGCCATAAAAGACTATTTTATT 58.796 33.333 3.47 0.00 33.66 1.40
141 142 9.533253 CCCAAGCCATAAAAGACTATTTTATTG 57.467 33.333 3.47 2.54 33.66 1.90
196 197 7.004086 TGGAGGATGAATTTCAACTACTTTGT 58.996 34.615 14.26 0.00 36.49 2.83
198 199 7.809806 GGAGGATGAATTTCAACTACTTTGTTG 59.190 37.037 2.68 0.00 46.09 3.33
228 231 1.736645 ACAAGCTTACGTCGCGCAT 60.737 52.632 8.75 0.00 0.00 4.73
235 238 2.202703 TTACGTCGCGCATGGTGAGA 62.203 55.000 8.75 0.00 35.42 3.27
240 243 1.139734 CGCGCATGGTGAGACTACT 59.860 57.895 8.75 0.00 0.00 2.57
247 250 3.189287 GCATGGTGAGACTACTTTTGTGG 59.811 47.826 0.00 0.00 36.92 4.17
266 269 6.027025 TGTGGAACATCTATCCTAGGTACT 57.973 41.667 9.08 0.00 45.67 2.73
267 270 7.157947 TGTGGAACATCTATCCTAGGTACTA 57.842 40.000 9.08 0.00 45.67 1.82
287 290 2.389715 AGCTAGCTAGGTCACGGAAAT 58.610 47.619 17.69 0.00 0.00 2.17
289 292 2.100916 GCTAGCTAGGTCACGGAAATCA 59.899 50.000 22.10 0.00 0.00 2.57
333 336 0.875059 GCCGTGTGAAAGGAAGAAGG 59.125 55.000 0.00 0.00 0.00 3.46
339 342 5.273944 CGTGTGAAAGGAAGAAGGAAAAAG 58.726 41.667 0.00 0.00 0.00 2.27
341 344 6.404293 CGTGTGAAAGGAAGAAGGAAAAAGAA 60.404 38.462 0.00 0.00 0.00 2.52
342 345 6.975197 GTGTGAAAGGAAGAAGGAAAAAGAAG 59.025 38.462 0.00 0.00 0.00 2.85
343 346 6.096846 TGTGAAAGGAAGAAGGAAAAAGAAGG 59.903 38.462 0.00 0.00 0.00 3.46
344 347 6.321435 GTGAAAGGAAGAAGGAAAAAGAAGGA 59.679 38.462 0.00 0.00 0.00 3.36
347 350 7.921041 AAGGAAGAAGGAAAAAGAAGGAAAT 57.079 32.000 0.00 0.00 0.00 2.17
348 351 7.531857 AGGAAGAAGGAAAAAGAAGGAAATC 57.468 36.000 0.00 0.00 0.00 2.17
350 353 7.732140 AGGAAGAAGGAAAAAGAAGGAAATCAT 59.268 33.333 0.00 0.00 0.00 2.45
351 354 8.031864 GGAAGAAGGAAAAAGAAGGAAATCATC 58.968 37.037 0.00 0.00 0.00 2.92
352 355 8.718158 AAGAAGGAAAAAGAAGGAAATCATCT 57.282 30.769 0.00 0.00 0.00 2.90
354 357 9.987726 AGAAGGAAAAAGAAGGAAATCATCTAT 57.012 29.630 0.00 0.00 0.00 1.98
362 365 7.565323 AGAAGGAAATCATCTATTTGAGTGC 57.435 36.000 0.00 0.00 37.93 4.40
363 366 7.344913 AGAAGGAAATCATCTATTTGAGTGCT 58.655 34.615 0.00 0.00 37.93 4.40
364 367 7.833183 AGAAGGAAATCATCTATTTGAGTGCTT 59.167 33.333 0.00 0.00 37.93 3.91
365 368 7.330900 AGGAAATCATCTATTTGAGTGCTTG 57.669 36.000 0.00 0.00 37.93 4.01
366 369 5.975939 GGAAATCATCTATTTGAGTGCTTGC 59.024 40.000 0.00 0.00 37.93 4.01
368 371 5.752892 ATCATCTATTTGAGTGCTTGCTG 57.247 39.130 0.00 0.00 0.00 4.41
369 372 4.582869 TCATCTATTTGAGTGCTTGCTGT 58.417 39.130 0.00 0.00 0.00 4.40
370 373 5.733676 TCATCTATTTGAGTGCTTGCTGTA 58.266 37.500 0.00 0.00 0.00 2.74
371 374 5.582269 TCATCTATTTGAGTGCTTGCTGTAC 59.418 40.000 0.00 0.00 0.00 2.90
374 377 2.620251 TTGAGTGCTTGCTGTACTGT 57.380 45.000 5.88 0.00 41.66 3.55
375 378 2.154854 TGAGTGCTTGCTGTACTGTC 57.845 50.000 5.88 0.00 41.66 3.51
377 380 2.064762 GAGTGCTTGCTGTACTGTCAG 58.935 52.381 0.00 0.00 41.66 3.51
378 381 1.414181 AGTGCTTGCTGTACTGTCAGT 59.586 47.619 10.99 10.99 40.11 3.41
379 382 2.628178 AGTGCTTGCTGTACTGTCAGTA 59.372 45.455 8.70 8.70 40.11 2.74
381 384 3.807622 GTGCTTGCTGTACTGTCAGTAAA 59.192 43.478 14.33 8.47 38.93 2.01
382 385 4.272504 GTGCTTGCTGTACTGTCAGTAAAA 59.727 41.667 14.33 5.51 38.93 1.52
383 386 4.878971 TGCTTGCTGTACTGTCAGTAAAAA 59.121 37.500 14.33 1.20 38.93 1.94
429 432 8.615211 GGTAGATAAAAACCCCTAAATGTAACG 58.385 37.037 0.00 0.00 0.00 3.18
430 433 9.166173 GTAGATAAAAACCCCTAAATGTAACGT 57.834 33.333 0.00 0.00 0.00 3.99
432 435 9.910267 AGATAAAAACCCCTAAATGTAACGTAT 57.090 29.630 0.00 0.00 0.00 3.06
433 436 9.940166 GATAAAAACCCCTAAATGTAACGTATG 57.060 33.333 0.00 0.00 0.00 2.39
434 437 6.762702 AAAACCCCTAAATGTAACGTATGG 57.237 37.500 0.00 0.00 0.00 2.74
435 438 3.812262 ACCCCTAAATGTAACGTATGGC 58.188 45.455 0.00 0.00 0.00 4.40
437 440 2.803956 CCCTAAATGTAACGTATGGCGG 59.196 50.000 0.00 0.00 46.52 6.13
438 441 3.493002 CCCTAAATGTAACGTATGGCGGA 60.493 47.826 0.00 0.00 46.52 5.54
439 442 4.312443 CCTAAATGTAACGTATGGCGGAT 58.688 43.478 0.00 0.00 46.52 4.18
440 443 4.387862 CCTAAATGTAACGTATGGCGGATC 59.612 45.833 0.00 0.00 46.52 3.36
441 444 3.462483 AATGTAACGTATGGCGGATCA 57.538 42.857 0.00 0.00 46.52 2.92
442 445 3.678056 ATGTAACGTATGGCGGATCAT 57.322 42.857 0.00 0.00 46.52 2.45
443 446 4.794278 ATGTAACGTATGGCGGATCATA 57.206 40.909 0.00 0.00 46.52 2.15
444 447 4.587584 TGTAACGTATGGCGGATCATAA 57.412 40.909 0.00 0.00 46.52 1.90
445 448 5.142061 TGTAACGTATGGCGGATCATAAT 57.858 39.130 0.00 0.00 46.52 1.28
446 449 5.543714 TGTAACGTATGGCGGATCATAATT 58.456 37.500 0.00 0.00 46.52 1.40
447 450 5.636121 TGTAACGTATGGCGGATCATAATTC 59.364 40.000 0.00 0.00 46.52 2.17
448 451 4.537135 ACGTATGGCGGATCATAATTCT 57.463 40.909 0.00 0.00 46.52 2.40
449 452 4.894784 ACGTATGGCGGATCATAATTCTT 58.105 39.130 0.00 0.00 46.52 2.52
450 453 4.690748 ACGTATGGCGGATCATAATTCTTG 59.309 41.667 0.00 0.00 46.52 3.02
451 454 4.436050 CGTATGGCGGATCATAATTCTTGC 60.436 45.833 0.00 0.00 36.85 4.01
452 455 1.872952 TGGCGGATCATAATTCTTGCG 59.127 47.619 0.00 0.00 0.00 4.85
453 456 1.873591 GGCGGATCATAATTCTTGCGT 59.126 47.619 0.00 0.00 0.00 5.24
454 457 2.096218 GGCGGATCATAATTCTTGCGTC 60.096 50.000 0.00 0.00 0.00 5.19
455 458 2.410262 GCGGATCATAATTCTTGCGTCG 60.410 50.000 0.00 0.00 0.00 5.12
456 459 2.410262 CGGATCATAATTCTTGCGTCGC 60.410 50.000 11.10 11.10 0.00 5.19
457 460 2.410262 GGATCATAATTCTTGCGTCGCG 60.410 50.000 13.38 0.00 0.00 5.87
458 461 0.927537 TCATAATTCTTGCGTCGCGG 59.072 50.000 13.38 8.18 0.00 6.46
459 462 0.927537 CATAATTCTTGCGTCGCGGA 59.072 50.000 13.38 10.52 0.00 5.54
460 463 1.526887 CATAATTCTTGCGTCGCGGAT 59.473 47.619 13.38 0.00 0.00 4.18
461 464 2.495409 TAATTCTTGCGTCGCGGATA 57.505 45.000 13.38 1.57 0.00 2.59
462 465 0.928229 AATTCTTGCGTCGCGGATAC 59.072 50.000 13.38 0.00 0.00 2.24
463 466 0.874607 ATTCTTGCGTCGCGGATACC 60.875 55.000 13.38 0.00 0.00 2.73
464 467 2.894240 TTCTTGCGTCGCGGATACCC 62.894 60.000 13.38 0.00 0.00 3.69
485 488 3.551259 GGCACCCATTCTTCTCGAA 57.449 52.632 0.00 0.00 35.78 3.71
486 489 1.821216 GGCACCCATTCTTCTCGAAA 58.179 50.000 0.00 0.00 34.79 3.46
487 490 2.159382 GGCACCCATTCTTCTCGAAAA 58.841 47.619 0.00 0.00 34.79 2.29
488 491 2.755103 GGCACCCATTCTTCTCGAAAAT 59.245 45.455 0.00 0.00 34.79 1.82
489 492 3.428045 GGCACCCATTCTTCTCGAAAATG 60.428 47.826 0.00 0.00 34.79 2.32
490 493 3.440173 GCACCCATTCTTCTCGAAAATGA 59.560 43.478 9.72 0.00 34.79 2.57
491 494 4.082787 GCACCCATTCTTCTCGAAAATGAA 60.083 41.667 9.72 5.18 34.79 2.57
492 495 5.393962 CACCCATTCTTCTCGAAAATGAAC 58.606 41.667 9.72 0.00 34.79 3.18
493 496 5.048782 CACCCATTCTTCTCGAAAATGAACA 60.049 40.000 9.72 0.00 34.79 3.18
494 497 5.048713 ACCCATTCTTCTCGAAAATGAACAC 60.049 40.000 9.72 0.00 34.79 3.32
495 498 5.082059 CCATTCTTCTCGAAAATGAACACG 58.918 41.667 9.72 0.00 34.79 4.49
496 499 4.725556 TTCTTCTCGAAAATGAACACGG 57.274 40.909 0.00 0.00 0.00 4.94
497 500 3.985008 TCTTCTCGAAAATGAACACGGA 58.015 40.909 0.00 0.00 0.00 4.69
498 501 4.566004 TCTTCTCGAAAATGAACACGGAT 58.434 39.130 0.00 0.00 0.00 4.18
499 502 4.388773 TCTTCTCGAAAATGAACACGGATG 59.611 41.667 0.00 0.00 0.00 3.51
500 503 3.659786 TCTCGAAAATGAACACGGATGT 58.340 40.909 0.00 0.00 42.46 3.06
509 512 2.890474 CACGGATGTGTAGCGGGC 60.890 66.667 0.00 0.00 41.34 6.13
510 513 3.387091 ACGGATGTGTAGCGGGCA 61.387 61.111 0.00 0.00 0.00 5.36
511 514 2.890474 CGGATGTGTAGCGGGCAC 60.890 66.667 0.00 2.21 37.37 5.01
512 515 2.584608 GGATGTGTAGCGGGCACT 59.415 61.111 9.12 0.00 37.70 4.40
513 516 1.521681 GGATGTGTAGCGGGCACTC 60.522 63.158 9.12 5.23 37.70 3.51
514 517 1.218047 GATGTGTAGCGGGCACTCA 59.782 57.895 9.12 0.00 37.70 3.41
515 518 0.807667 GATGTGTAGCGGGCACTCAG 60.808 60.000 9.12 0.00 37.70 3.35
516 519 2.125512 GTGTAGCGGGCACTCAGG 60.126 66.667 0.00 0.00 34.30 3.86
517 520 2.283604 TGTAGCGGGCACTCAGGA 60.284 61.111 0.00 0.00 0.00 3.86
518 521 2.351244 TGTAGCGGGCACTCAGGAG 61.351 63.158 0.00 0.00 0.00 3.69
519 522 2.037367 TAGCGGGCACTCAGGAGT 59.963 61.111 0.00 0.00 43.61 3.85
520 523 2.052690 TAGCGGGCACTCAGGAGTC 61.053 63.158 0.00 0.00 40.20 3.36
521 524 2.781431 TAGCGGGCACTCAGGAGTCA 62.781 60.000 0.00 0.00 40.20 3.41
522 525 2.575993 CGGGCACTCAGGAGTCAG 59.424 66.667 0.00 0.00 40.20 3.51
523 526 2.985456 GGGCACTCAGGAGTCAGG 59.015 66.667 0.00 0.00 40.20 3.86
524 527 1.610673 GGGCACTCAGGAGTCAGGA 60.611 63.158 0.00 0.00 40.20 3.86
525 528 1.594310 GGCACTCAGGAGTCAGGAC 59.406 63.158 0.00 0.00 40.20 3.85
526 529 1.188219 GGCACTCAGGAGTCAGGACA 61.188 60.000 0.00 0.00 40.20 4.02
527 530 0.037790 GCACTCAGGAGTCAGGACAC 60.038 60.000 0.00 0.00 40.20 3.67
528 531 0.605589 CACTCAGGAGTCAGGACACC 59.394 60.000 7.70 7.70 40.20 4.16
529 532 0.543174 ACTCAGGAGTCAGGACACCC 60.543 60.000 11.56 7.37 42.09 4.61
530 533 1.229209 TCAGGAGTCAGGACACCCC 60.229 63.158 11.56 5.16 42.09 4.95
543 546 5.373812 AGGACACCCCTGTATGAAAATAG 57.626 43.478 0.00 0.00 45.61 1.73
544 547 3.883489 GGACACCCCTGTATGAAAATAGC 59.117 47.826 0.00 0.00 0.00 2.97
545 548 4.523083 GACACCCCTGTATGAAAATAGCA 58.477 43.478 0.00 0.00 0.00 3.49
546 549 5.129368 ACACCCCTGTATGAAAATAGCAT 57.871 39.130 0.00 0.00 0.00 3.79
547 550 5.518865 ACACCCCTGTATGAAAATAGCATT 58.481 37.500 0.00 0.00 0.00 3.56
548 551 6.668645 ACACCCCTGTATGAAAATAGCATTA 58.331 36.000 0.00 0.00 0.00 1.90
549 552 7.122715 ACACCCCTGTATGAAAATAGCATTAA 58.877 34.615 0.00 0.00 0.00 1.40
550 553 7.617723 ACACCCCTGTATGAAAATAGCATTAAA 59.382 33.333 0.00 0.00 0.00 1.52
586 651 2.111999 TTTCTGACAGGGACGGCTGG 62.112 60.000 1.81 0.00 0.00 4.85
616 694 3.414700 GTCGGCGTTGCTCCAGTG 61.415 66.667 6.85 0.00 0.00 3.66
619 697 3.426568 GGCGTTGCTCCAGTGCTC 61.427 66.667 0.00 0.00 0.00 4.26
620 698 3.426568 GCGTTGCTCCAGTGCTCC 61.427 66.667 0.00 0.00 0.00 4.70
667 745 2.054232 AATCGTCTCTCCTCCGCTAA 57.946 50.000 0.00 0.00 0.00 3.09
668 746 2.054232 ATCGTCTCTCCTCCGCTAAA 57.946 50.000 0.00 0.00 0.00 1.85
669 747 1.830279 TCGTCTCTCCTCCGCTAAAA 58.170 50.000 0.00 0.00 0.00 1.52
670 748 2.165167 TCGTCTCTCCTCCGCTAAAAA 58.835 47.619 0.00 0.00 0.00 1.94
671 749 2.094854 TCGTCTCTCCTCCGCTAAAAAC 60.095 50.000 0.00 0.00 0.00 2.43
672 750 2.352421 CGTCTCTCCTCCGCTAAAAACA 60.352 50.000 0.00 0.00 0.00 2.83
673 751 3.254892 GTCTCTCCTCCGCTAAAAACAG 58.745 50.000 0.00 0.00 0.00 3.16
674 752 2.233922 TCTCTCCTCCGCTAAAAACAGG 59.766 50.000 0.00 0.00 0.00 4.00
675 753 2.233922 CTCTCCTCCGCTAAAAACAGGA 59.766 50.000 0.00 0.00 0.00 3.86
685 763 3.367703 GCTAAAAACAGGAGCATGCATGT 60.368 43.478 26.79 17.94 36.20 3.21
716 794 2.935122 AAACTTGCTTGGTGCGTGCG 62.935 55.000 0.00 0.00 46.63 5.34
831 909 1.743321 CGCCTCTCCTCCATCTCCAC 61.743 65.000 0.00 0.00 0.00 4.02
845 923 2.017559 CTCCACCTTCCCCGATCGAC 62.018 65.000 18.66 0.00 0.00 4.20
852 930 4.524318 CCCCGATCGACCAACCCG 62.524 72.222 18.66 0.00 0.00 5.28
866 944 4.891260 ACCAACCCGCTAGCTATTAATAC 58.109 43.478 13.93 0.00 0.00 1.89
906 999 1.681486 CTTTCCTCCTCCCTCGCTCC 61.681 65.000 0.00 0.00 0.00 4.70
907 1000 2.455960 TTTCCTCCTCCCTCGCTCCA 62.456 60.000 0.00 0.00 0.00 3.86
908 1001 2.837291 CCTCCTCCCTCGCTCCAG 60.837 72.222 0.00 0.00 0.00 3.86
909 1002 3.535962 CTCCTCCCTCGCTCCAGC 61.536 72.222 0.00 0.00 37.78 4.85
910 1003 4.382541 TCCTCCCTCGCTCCAGCA 62.383 66.667 0.00 0.00 42.21 4.41
924 1017 1.494721 TCCAGCACAACCTTCTTCCTT 59.505 47.619 0.00 0.00 0.00 3.36
925 1018 1.882623 CCAGCACAACCTTCTTCCTTC 59.117 52.381 0.00 0.00 0.00 3.46
928 1021 2.155279 GCACAACCTTCTTCCTTCCTC 58.845 52.381 0.00 0.00 0.00 3.71
933 1026 2.991580 ACCTTCTTCCTTCCTCCTTGA 58.008 47.619 0.00 0.00 0.00 3.02
935 1028 3.521531 ACCTTCTTCCTTCCTCCTTGATC 59.478 47.826 0.00 0.00 0.00 2.92
939 1032 3.639094 TCTTCCTTCCTCCTTGATCGATC 59.361 47.826 18.72 18.72 0.00 3.69
941 1034 1.604185 CCTTCCTCCTTGATCGATCGC 60.604 57.143 20.03 0.00 0.00 4.58
948 1041 1.334994 CTTGATCGATCGCTCCATCG 58.665 55.000 20.03 3.81 45.91 3.84
1013 1106 3.650950 AGCAATGGGGCTCACGGT 61.651 61.111 0.00 0.00 41.05 4.83
1437 1545 2.740826 CAGGCCAACGTGTACGGG 60.741 66.667 5.01 2.59 44.95 5.28
1455 1563 3.826754 CTGGCCATGCAGCAGCTG 61.827 66.667 18.93 18.93 42.74 4.24
1601 1709 4.612536 CGCCGCCGCCAAATGATC 62.613 66.667 0.00 0.00 0.00 2.92
1602 1710 4.270376 GCCGCCGCCAAATGATCC 62.270 66.667 0.00 0.00 0.00 3.36
1603 1711 2.828095 CCGCCGCCAAATGATCCA 60.828 61.111 0.00 0.00 0.00 3.41
1619 1727 2.547798 CATCATGCATCGTCGCCG 59.452 61.111 0.00 0.00 0.00 6.46
1662 1770 3.058432 TCATCGTCGTCGTCTTCTTCTTT 60.058 43.478 1.33 0.00 38.33 2.52
1663 1771 2.647337 TCGTCGTCGTCTTCTTCTTTG 58.353 47.619 1.33 0.00 38.33 2.77
1664 1772 1.122680 CGTCGTCGTCTTCTTCTTTGC 59.877 52.381 0.00 0.00 0.00 3.68
1665 1773 2.124903 GTCGTCGTCTTCTTCTTTGCA 58.875 47.619 0.00 0.00 0.00 4.08
1666 1774 2.731976 GTCGTCGTCTTCTTCTTTGCAT 59.268 45.455 0.00 0.00 0.00 3.96
1667 1775 2.731451 TCGTCGTCTTCTTCTTTGCATG 59.269 45.455 0.00 0.00 0.00 4.06
1668 1776 2.159787 CGTCGTCTTCTTCTTTGCATGG 60.160 50.000 0.00 0.00 0.00 3.66
1669 1777 3.067106 GTCGTCTTCTTCTTTGCATGGA 58.933 45.455 0.00 0.00 0.00 3.41
1670 1778 3.686726 GTCGTCTTCTTCTTTGCATGGAT 59.313 43.478 0.00 0.00 0.00 3.41
1671 1779 3.935203 TCGTCTTCTTCTTTGCATGGATC 59.065 43.478 0.00 0.00 0.00 3.36
1696 1806 3.266510 TGGATTGGATTTCCTCGTCAG 57.733 47.619 0.00 0.00 36.82 3.51
1702 1812 2.171237 TGGATTTCCTCGTCAGCATCAT 59.829 45.455 0.00 0.00 36.82 2.45
1703 1813 2.805099 GGATTTCCTCGTCAGCATCATC 59.195 50.000 0.00 0.00 0.00 2.92
1715 1825 4.751600 GTCAGCATCATCCATCGTTCATTA 59.248 41.667 0.00 0.00 0.00 1.90
1716 1826 5.410746 GTCAGCATCATCCATCGTTCATTAT 59.589 40.000 0.00 0.00 0.00 1.28
1717 1827 5.999600 TCAGCATCATCCATCGTTCATTATT 59.000 36.000 0.00 0.00 0.00 1.40
1718 1828 6.072893 TCAGCATCATCCATCGTTCATTATTG 60.073 38.462 0.00 0.00 0.00 1.90
1775 1886 3.370209 GGTGTAGTAGTTGGAACCCCATC 60.370 52.174 0.00 0.00 43.12 3.51
1781 1892 3.441500 AGTTGGAACCCCATCTTCTTC 57.558 47.619 0.00 0.00 43.12 2.87
1789 1900 5.515710 GGAACCCCATCTTCTTCTTCTTCTT 60.516 44.000 0.00 0.00 0.00 2.52
1790 1901 5.172687 ACCCCATCTTCTTCTTCTTCTTC 57.827 43.478 0.00 0.00 0.00 2.87
1793 1904 5.879777 CCCCATCTTCTTCTTCTTCTTCTTC 59.120 44.000 0.00 0.00 0.00 2.87
1841 1952 7.490962 TGTCCATAAAAGCGAATATTGTAGG 57.509 36.000 0.00 0.00 0.00 3.18
1865 1976 5.300034 GCCATGATTTACTGATCACCATCAA 59.700 40.000 0.00 0.00 38.63 2.57
1923 2040 7.756395 ATTCACTCATCACATCTGTTTTCTT 57.244 32.000 0.00 0.00 0.00 2.52
1924 2041 7.572523 TTCACTCATCACATCTGTTTTCTTT 57.427 32.000 0.00 0.00 0.00 2.52
1925 2042 7.194607 TCACTCATCACATCTGTTTTCTTTC 57.805 36.000 0.00 0.00 0.00 2.62
1926 2043 6.994496 TCACTCATCACATCTGTTTTCTTTCT 59.006 34.615 0.00 0.00 0.00 2.52
2016 2635 9.175312 ACTACTACTGATCTAGAAACAAATCGA 57.825 33.333 0.00 0.00 0.00 3.59
2021 2640 5.289595 TGATCTAGAAACAAATCGATCCCG 58.710 41.667 0.00 0.00 37.07 5.14
2022 2641 4.054780 TCTAGAAACAAATCGATCCCGG 57.945 45.455 0.00 0.00 36.24 5.73
2023 2642 1.379527 AGAAACAAATCGATCCCGGC 58.620 50.000 0.00 0.00 36.24 6.13
2041 2666 3.881688 CCGGCAGAGATTCAGATGATTTT 59.118 43.478 0.00 0.00 0.00 1.82
2078 2703 5.247110 TCTGAATTTGACAGGAAGAGTAGCT 59.753 40.000 0.00 0.00 36.22 3.32
2119 2744 0.890542 CAGTTGCAAGCCACAGCCTA 60.891 55.000 0.00 0.00 41.25 3.93
2188 2847 5.043762 ACCCATTTCCTCCTTCAACCTATA 58.956 41.667 0.00 0.00 0.00 1.31
2252 2911 2.907917 CCCGAGTAGAGGAGGCGG 60.908 72.222 0.00 0.00 41.53 6.13
2274 2933 1.461317 CGAACATGTCGTCGCTACCG 61.461 60.000 6.98 0.00 45.09 4.02
2278 2937 3.122250 ATGTCGTCGCTACCGAGCC 62.122 63.158 0.00 0.00 46.86 4.70
2296 2955 0.176680 CCACATCTTCCTCCTCACCG 59.823 60.000 0.00 0.00 0.00 4.94
2300 2959 4.821589 CTTCCTCCTCACCGCCGC 62.822 72.222 0.00 0.00 0.00 6.53
2321 2980 1.227973 CCCTCTTATTCCTGCCGCC 60.228 63.158 0.00 0.00 0.00 6.13
2342 3001 4.530857 GGCGATGTCCTCCACCGG 62.531 72.222 0.00 0.00 0.00 5.28
2415 3074 2.240612 GATGCGGCGAGAACAACCAC 62.241 60.000 12.98 0.00 0.00 4.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.134580 CGACATGCATCCACTCTTCCT 60.135 52.381 0.00 0.00 0.00 3.36
1 2 1.293924 CGACATGCATCCACTCTTCC 58.706 55.000 0.00 0.00 0.00 3.46
2 3 0.654683 GCGACATGCATCCACTCTTC 59.345 55.000 0.00 0.00 45.45 2.87
3 4 1.086067 CGCGACATGCATCCACTCTT 61.086 55.000 0.00 0.00 46.97 2.85
4 5 1.520120 CGCGACATGCATCCACTCT 60.520 57.895 0.00 0.00 46.97 3.24
5 6 0.877649 ATCGCGACATGCATCCACTC 60.878 55.000 12.93 0.00 46.97 3.51
6 7 0.462581 AATCGCGACATGCATCCACT 60.463 50.000 12.93 0.00 46.97 4.00
7 8 0.378257 AAATCGCGACATGCATCCAC 59.622 50.000 12.93 0.00 46.97 4.02
8 9 0.657312 GAAATCGCGACATGCATCCA 59.343 50.000 12.93 0.00 46.97 3.41
9 10 0.657312 TGAAATCGCGACATGCATCC 59.343 50.000 12.93 0.00 46.97 3.51
10 11 1.328680 ACTGAAATCGCGACATGCATC 59.671 47.619 12.93 4.29 46.97 3.91
11 12 1.372582 ACTGAAATCGCGACATGCAT 58.627 45.000 12.93 0.00 46.97 3.96
12 13 1.155889 AACTGAAATCGCGACATGCA 58.844 45.000 12.93 7.71 46.97 3.96
13 14 2.536928 GGTAACTGAAATCGCGACATGC 60.537 50.000 12.93 2.12 41.47 4.06
14 15 2.285026 CGGTAACTGAAATCGCGACATG 60.285 50.000 12.93 2.67 0.00 3.21
15 16 1.924524 CGGTAACTGAAATCGCGACAT 59.075 47.619 12.93 2.07 0.00 3.06
16 17 1.068402 TCGGTAACTGAAATCGCGACA 60.068 47.619 12.93 3.91 0.00 4.35
17 18 1.621107 TCGGTAACTGAAATCGCGAC 58.379 50.000 12.93 0.00 0.00 5.19
18 19 2.159352 TCATCGGTAACTGAAATCGCGA 60.159 45.455 13.09 13.09 0.00 5.87
19 20 2.190161 TCATCGGTAACTGAAATCGCG 58.810 47.619 0.00 0.00 0.00 5.87
20 21 4.508124 AGATTCATCGGTAACTGAAATCGC 59.492 41.667 0.00 0.00 35.20 4.58
21 22 6.589830 AAGATTCATCGGTAACTGAAATCG 57.410 37.500 0.00 0.00 35.20 3.34
22 23 9.046296 ACATAAGATTCATCGGTAACTGAAATC 57.954 33.333 0.00 0.00 35.20 2.17
23 24 8.964476 ACATAAGATTCATCGGTAACTGAAAT 57.036 30.769 0.00 0.00 35.20 2.17
24 25 8.786826 AACATAAGATTCATCGGTAACTGAAA 57.213 30.769 0.00 0.00 35.20 2.69
25 26 8.786826 AAACATAAGATTCATCGGTAACTGAA 57.213 30.769 0.00 0.00 35.95 3.02
26 27 7.222031 CGAAACATAAGATTCATCGGTAACTGA 59.778 37.037 0.00 0.00 0.00 3.41
27 28 7.337718 CGAAACATAAGATTCATCGGTAACTG 58.662 38.462 0.00 0.00 0.00 3.16
28 29 6.479001 CCGAAACATAAGATTCATCGGTAACT 59.521 38.462 3.30 0.00 42.41 2.24
29 30 6.292703 CCCGAAACATAAGATTCATCGGTAAC 60.293 42.308 10.03 0.00 45.04 2.50
30 31 5.756347 CCCGAAACATAAGATTCATCGGTAA 59.244 40.000 10.03 0.00 45.04 2.85
31 32 5.294356 CCCGAAACATAAGATTCATCGGTA 58.706 41.667 10.03 0.00 45.04 4.02
32 33 4.127171 CCCGAAACATAAGATTCATCGGT 58.873 43.478 10.03 0.00 45.04 4.69
33 34 3.058914 GCCCGAAACATAAGATTCATCGG 60.059 47.826 4.42 4.42 45.83 4.18
34 35 3.362986 CGCCCGAAACATAAGATTCATCG 60.363 47.826 0.00 0.00 0.00 3.84
35 36 3.807622 TCGCCCGAAACATAAGATTCATC 59.192 43.478 0.00 0.00 0.00 2.92
36 37 3.804036 TCGCCCGAAACATAAGATTCAT 58.196 40.909 0.00 0.00 0.00 2.57
37 38 3.254470 TCGCCCGAAACATAAGATTCA 57.746 42.857 0.00 0.00 0.00 2.57
38 39 3.607078 GCATCGCCCGAAACATAAGATTC 60.607 47.826 0.00 0.00 0.00 2.52
39 40 2.290641 GCATCGCCCGAAACATAAGATT 59.709 45.455 0.00 0.00 0.00 2.40
40 41 1.873591 GCATCGCCCGAAACATAAGAT 59.126 47.619 0.00 0.00 0.00 2.40
41 42 1.295792 GCATCGCCCGAAACATAAGA 58.704 50.000 0.00 0.00 0.00 2.10
42 43 0.307760 GGCATCGCCCGAAACATAAG 59.692 55.000 0.00 0.00 44.06 1.73
43 44 2.399856 GGCATCGCCCGAAACATAA 58.600 52.632 0.00 0.00 44.06 1.90
44 45 4.134623 GGCATCGCCCGAAACATA 57.865 55.556 0.00 0.00 44.06 2.29
59 60 1.819632 CTCCCAGTGGCGTTATGGC 60.820 63.158 2.61 0.00 45.12 4.40
60 61 0.251916 TTCTCCCAGTGGCGTTATGG 59.748 55.000 2.61 0.00 0.00 2.74
61 62 1.656652 CTTCTCCCAGTGGCGTTATG 58.343 55.000 2.61 0.00 0.00 1.90
62 63 0.541863 CCTTCTCCCAGTGGCGTTAT 59.458 55.000 2.61 0.00 0.00 1.89
63 64 1.550130 CCCTTCTCCCAGTGGCGTTA 61.550 60.000 2.61 0.00 0.00 3.18
64 65 2.750350 CCTTCTCCCAGTGGCGTT 59.250 61.111 2.61 0.00 0.00 4.84
65 66 3.322466 CCCTTCTCCCAGTGGCGT 61.322 66.667 2.61 0.00 0.00 5.68
66 67 3.322466 ACCCTTCTCCCAGTGGCG 61.322 66.667 2.61 0.00 0.00 5.69
67 68 2.190488 CTCACCCTTCTCCCAGTGGC 62.190 65.000 2.61 0.00 0.00 5.01
68 69 1.557269 CCTCACCCTTCTCCCAGTGG 61.557 65.000 0.63 0.63 0.00 4.00
69 70 1.557269 CCCTCACCCTTCTCCCAGTG 61.557 65.000 0.00 0.00 0.00 3.66
70 71 1.229658 CCCTCACCCTTCTCCCAGT 60.230 63.158 0.00 0.00 0.00 4.00
71 72 1.997874 CCCCTCACCCTTCTCCCAG 60.998 68.421 0.00 0.00 0.00 4.45
72 73 2.056099 TTCCCCTCACCCTTCTCCCA 62.056 60.000 0.00 0.00 0.00 4.37
73 74 1.229853 TTCCCCTCACCCTTCTCCC 60.230 63.158 0.00 0.00 0.00 4.30
74 75 0.252742 TCTTCCCCTCACCCTTCTCC 60.253 60.000 0.00 0.00 0.00 3.71
75 76 1.279558 GTTCTTCCCCTCACCCTTCTC 59.720 57.143 0.00 0.00 0.00 2.87
76 77 1.363246 GTTCTTCCCCTCACCCTTCT 58.637 55.000 0.00 0.00 0.00 2.85
77 78 0.328592 GGTTCTTCCCCTCACCCTTC 59.671 60.000 0.00 0.00 0.00 3.46
78 79 2.476081 GGTTCTTCCCCTCACCCTT 58.524 57.895 0.00 0.00 0.00 3.95
79 80 4.252493 GGTTCTTCCCCTCACCCT 57.748 61.111 0.00 0.00 0.00 4.34
88 89 2.928116 CGTCGTCTAAATGGGTTCTTCC 59.072 50.000 0.00 0.00 0.00 3.46
89 90 3.841643 TCGTCGTCTAAATGGGTTCTTC 58.158 45.455 0.00 0.00 0.00 2.87
90 91 3.947910 TCGTCGTCTAAATGGGTTCTT 57.052 42.857 0.00 0.00 0.00 2.52
91 92 3.846360 CTTCGTCGTCTAAATGGGTTCT 58.154 45.455 0.00 0.00 0.00 3.01
92 93 2.347755 GCTTCGTCGTCTAAATGGGTTC 59.652 50.000 0.00 0.00 0.00 3.62
93 94 2.344025 GCTTCGTCGTCTAAATGGGTT 58.656 47.619 0.00 0.00 0.00 4.11
94 95 1.734707 CGCTTCGTCGTCTAAATGGGT 60.735 52.381 0.00 0.00 0.00 4.51
95 96 0.921347 CGCTTCGTCGTCTAAATGGG 59.079 55.000 0.00 0.00 0.00 4.00
96 97 0.297820 GCGCTTCGTCGTCTAAATGG 59.702 55.000 0.00 0.00 0.00 3.16
97 98 0.297820 GGCGCTTCGTCGTCTAAATG 59.702 55.000 7.64 0.00 0.00 2.32
98 99 0.804933 GGGCGCTTCGTCGTCTAAAT 60.805 55.000 7.64 0.00 34.05 1.40
99 100 1.444895 GGGCGCTTCGTCGTCTAAA 60.445 57.895 7.64 0.00 34.05 1.85
100 101 2.144833 TTGGGCGCTTCGTCGTCTAA 62.145 55.000 7.64 0.00 32.35 2.10
101 102 2.537792 CTTGGGCGCTTCGTCGTCTA 62.538 60.000 7.64 0.00 34.05 2.59
102 103 3.916392 CTTGGGCGCTTCGTCGTCT 62.916 63.158 7.64 0.00 34.05 4.18
103 104 3.479269 CTTGGGCGCTTCGTCGTC 61.479 66.667 7.64 0.00 29.52 4.20
107 108 2.813226 TTATGGCTTGGGCGCTTCGT 62.813 55.000 7.64 0.00 39.81 3.85
108 109 1.653094 TTTATGGCTTGGGCGCTTCG 61.653 55.000 7.64 0.00 39.81 3.79
109 110 0.530288 TTTTATGGCTTGGGCGCTTC 59.470 50.000 7.64 0.02 39.81 3.86
110 111 0.532115 CTTTTATGGCTTGGGCGCTT 59.468 50.000 7.64 0.00 39.81 4.68
111 112 0.323360 TCTTTTATGGCTTGGGCGCT 60.323 50.000 7.64 0.00 39.81 5.92
112 113 0.179137 GTCTTTTATGGCTTGGGCGC 60.179 55.000 0.00 0.00 39.81 6.53
113 114 1.463674 AGTCTTTTATGGCTTGGGCG 58.536 50.000 0.00 0.00 39.81 6.13
114 115 5.598416 AAATAGTCTTTTATGGCTTGGGC 57.402 39.130 0.00 0.00 37.82 5.36
115 116 9.533253 CAATAAAATAGTCTTTTATGGCTTGGG 57.467 33.333 6.93 0.00 35.47 4.12
163 164 9.872684 AGTTGAAATTCATCCTCCACATATTAT 57.127 29.630 0.00 0.00 0.00 1.28
165 166 9.125026 GTAGTTGAAATTCATCCTCCACATATT 57.875 33.333 0.00 0.00 0.00 1.28
166 167 8.497745 AGTAGTTGAAATTCATCCTCCACATAT 58.502 33.333 0.00 0.00 0.00 1.78
167 168 7.861629 AGTAGTTGAAATTCATCCTCCACATA 58.138 34.615 0.00 0.00 0.00 2.29
168 169 6.725364 AGTAGTTGAAATTCATCCTCCACAT 58.275 36.000 0.00 0.00 0.00 3.21
169 170 6.126863 AGTAGTTGAAATTCATCCTCCACA 57.873 37.500 0.00 0.00 0.00 4.17
170 171 7.040409 ACAAAGTAGTTGAAATTCATCCTCCAC 60.040 37.037 0.00 0.00 39.87 4.02
171 172 7.004086 ACAAAGTAGTTGAAATTCATCCTCCA 58.996 34.615 0.00 0.00 39.87 3.86
198 199 4.846615 ACGTAAGCTTGTGACGAAGTAGTC 60.847 45.833 23.21 0.00 42.93 2.59
202 203 2.391879 GACGTAAGCTTGTGACGAAGT 58.608 47.619 23.21 5.22 46.27 3.01
228 231 4.080807 TGTTCCACAAAAGTAGTCTCACCA 60.081 41.667 0.00 0.00 0.00 4.17
235 238 7.259088 AGGATAGATGTTCCACAAAAGTAGT 57.741 36.000 0.00 0.00 35.59 2.73
240 243 6.636454 ACCTAGGATAGATGTTCCACAAAA 57.364 37.500 17.98 0.00 42.77 2.44
247 250 7.281549 GCTAGCTAGTACCTAGGATAGATGTTC 59.718 44.444 21.62 4.02 42.77 3.18
254 257 6.270755 ACCTAGCTAGCTAGTACCTAGGATA 58.729 44.000 35.71 11.98 45.04 2.59
265 268 2.257691 TCCGTGACCTAGCTAGCTAG 57.742 55.000 35.39 35.39 44.07 3.42
266 269 2.723322 TTCCGTGACCTAGCTAGCTA 57.277 50.000 22.85 22.85 0.00 3.32
267 270 1.848652 TTTCCGTGACCTAGCTAGCT 58.151 50.000 23.12 23.12 0.00 3.32
268 271 2.100916 TGATTTCCGTGACCTAGCTAGC 59.899 50.000 15.74 6.62 0.00 3.42
273 276 5.406780 GCATTAGATGATTTCCGTGACCTAG 59.593 44.000 0.00 0.00 0.00 3.02
277 280 3.059597 CGGCATTAGATGATTTCCGTGAC 60.060 47.826 0.00 0.00 0.00 3.67
281 284 4.811555 TTTCGGCATTAGATGATTTCCG 57.188 40.909 0.00 0.00 37.00 4.30
287 290 6.582636 ACTATGACTTTTCGGCATTAGATGA 58.417 36.000 0.00 0.00 0.00 2.92
289 292 6.260936 CCAACTATGACTTTTCGGCATTAGAT 59.739 38.462 0.00 0.00 0.00 1.98
339 342 7.565323 AGCACTCAAATAGATGATTTCCTTC 57.435 36.000 0.00 0.00 35.45 3.46
341 344 6.183360 GCAAGCACTCAAATAGATGATTTCCT 60.183 38.462 0.00 0.00 35.45 3.36
342 345 5.975939 GCAAGCACTCAAATAGATGATTTCC 59.024 40.000 0.00 0.00 35.45 3.13
343 346 6.691818 CAGCAAGCACTCAAATAGATGATTTC 59.308 38.462 0.00 0.00 35.45 2.17
344 347 6.152323 ACAGCAAGCACTCAAATAGATGATTT 59.848 34.615 0.00 0.00 38.34 2.17
347 350 4.582869 ACAGCAAGCACTCAAATAGATGA 58.417 39.130 0.00 0.00 0.00 2.92
348 351 4.959596 ACAGCAAGCACTCAAATAGATG 57.040 40.909 0.00 0.00 0.00 2.90
350 353 4.931601 CAGTACAGCAAGCACTCAAATAGA 59.068 41.667 0.00 0.00 0.00 1.98
351 354 4.692625 ACAGTACAGCAAGCACTCAAATAG 59.307 41.667 0.00 0.00 0.00 1.73
352 355 4.641396 ACAGTACAGCAAGCACTCAAATA 58.359 39.130 0.00 0.00 0.00 1.40
354 357 2.872245 GACAGTACAGCAAGCACTCAAA 59.128 45.455 0.00 0.00 0.00 2.69
355 358 2.158971 TGACAGTACAGCAAGCACTCAA 60.159 45.455 0.00 0.00 0.00 3.02
356 359 1.412343 TGACAGTACAGCAAGCACTCA 59.588 47.619 0.00 0.00 0.00 3.41
357 360 2.064762 CTGACAGTACAGCAAGCACTC 58.935 52.381 0.00 0.00 0.00 3.51
358 361 1.414181 ACTGACAGTACAGCAAGCACT 59.586 47.619 6.24 0.00 41.06 4.40
359 362 1.871080 ACTGACAGTACAGCAAGCAC 58.129 50.000 6.24 0.00 41.06 4.40
360 363 3.744238 TTACTGACAGTACAGCAAGCA 57.256 42.857 14.96 0.00 41.06 3.91
361 364 5.418310 TTTTTACTGACAGTACAGCAAGC 57.582 39.130 14.96 0.00 41.06 4.01
403 406 8.615211 CGTTACATTTAGGGGTTTTTATCTACC 58.385 37.037 0.00 0.00 0.00 3.18
404 407 9.166173 ACGTTACATTTAGGGGTTTTTATCTAC 57.834 33.333 0.00 0.00 0.00 2.59
406 409 9.910267 ATACGTTACATTTAGGGGTTTTTATCT 57.090 29.630 0.00 0.00 0.00 1.98
407 410 9.940166 CATACGTTACATTTAGGGGTTTTTATC 57.060 33.333 0.00 0.00 0.00 1.75
408 411 8.905850 CCATACGTTACATTTAGGGGTTTTTAT 58.094 33.333 0.00 0.00 0.00 1.40
409 412 7.148103 GCCATACGTTACATTTAGGGGTTTTTA 60.148 37.037 0.00 0.00 0.00 1.52
410 413 6.350361 GCCATACGTTACATTTAGGGGTTTTT 60.350 38.462 0.00 0.00 0.00 1.94
411 414 5.125900 GCCATACGTTACATTTAGGGGTTTT 59.874 40.000 0.00 0.00 0.00 2.43
412 415 4.641541 GCCATACGTTACATTTAGGGGTTT 59.358 41.667 0.00 0.00 0.00 3.27
413 416 4.201657 GCCATACGTTACATTTAGGGGTT 58.798 43.478 0.00 0.00 0.00 4.11
414 417 3.742013 CGCCATACGTTACATTTAGGGGT 60.742 47.826 0.00 0.00 36.87 4.95
415 418 2.803956 CGCCATACGTTACATTTAGGGG 59.196 50.000 0.00 0.00 36.87 4.79
416 419 2.803956 CCGCCATACGTTACATTTAGGG 59.196 50.000 0.00 0.00 41.42 3.53
417 420 3.719924 TCCGCCATACGTTACATTTAGG 58.280 45.455 0.00 0.00 41.42 2.69
418 421 4.986034 TGATCCGCCATACGTTACATTTAG 59.014 41.667 0.00 0.00 41.42 1.85
419 422 4.946445 TGATCCGCCATACGTTACATTTA 58.054 39.130 0.00 0.00 41.42 1.40
420 423 3.799366 TGATCCGCCATACGTTACATTT 58.201 40.909 0.00 0.00 41.42 2.32
421 424 3.462483 TGATCCGCCATACGTTACATT 57.538 42.857 0.00 0.00 41.42 2.71
422 425 3.678056 ATGATCCGCCATACGTTACAT 57.322 42.857 0.00 0.00 41.42 2.29
423 426 4.587584 TTATGATCCGCCATACGTTACA 57.412 40.909 0.00 0.00 41.42 2.41
424 427 5.867716 AGAATTATGATCCGCCATACGTTAC 59.132 40.000 0.00 0.00 41.42 2.50
425 428 6.032956 AGAATTATGATCCGCCATACGTTA 57.967 37.500 0.00 0.00 41.42 3.18
426 429 4.894784 AGAATTATGATCCGCCATACGTT 58.105 39.130 0.00 0.00 41.42 3.99
427 430 4.537135 AGAATTATGATCCGCCATACGT 57.463 40.909 0.00 0.00 41.42 3.57
428 431 4.436050 GCAAGAATTATGATCCGCCATACG 60.436 45.833 0.00 0.00 43.15 3.06
429 432 4.436050 CGCAAGAATTATGATCCGCCATAC 60.436 45.833 0.00 0.00 43.02 2.39
430 433 3.684305 CGCAAGAATTATGATCCGCCATA 59.316 43.478 0.00 0.00 43.02 2.74
431 434 2.485426 CGCAAGAATTATGATCCGCCAT 59.515 45.455 0.00 0.00 43.02 4.40
432 435 1.872952 CGCAAGAATTATGATCCGCCA 59.127 47.619 0.00 0.00 43.02 5.69
433 436 1.873591 ACGCAAGAATTATGATCCGCC 59.126 47.619 0.00 0.00 43.62 6.13
434 437 2.410262 CGACGCAAGAATTATGATCCGC 60.410 50.000 0.00 0.00 43.62 5.54
435 438 2.410262 GCGACGCAAGAATTATGATCCG 60.410 50.000 16.42 0.00 43.62 4.18
436 439 2.410262 CGCGACGCAAGAATTATGATCC 60.410 50.000 21.35 0.00 43.62 3.36
437 440 2.410262 CCGCGACGCAAGAATTATGATC 60.410 50.000 21.35 0.00 43.62 2.92
438 441 1.526887 CCGCGACGCAAGAATTATGAT 59.473 47.619 21.35 0.00 43.62 2.45
439 442 0.927537 CCGCGACGCAAGAATTATGA 59.072 50.000 21.35 0.00 43.62 2.15
440 443 0.927537 TCCGCGACGCAAGAATTATG 59.072 50.000 21.35 0.00 43.62 1.90
441 444 1.865865 ATCCGCGACGCAAGAATTAT 58.134 45.000 21.35 0.00 43.62 1.28
442 445 2.121786 GTATCCGCGACGCAAGAATTA 58.878 47.619 21.35 3.60 43.62 1.40
443 446 0.928229 GTATCCGCGACGCAAGAATT 59.072 50.000 21.35 4.57 43.62 2.17
444 447 0.874607 GGTATCCGCGACGCAAGAAT 60.875 55.000 21.35 9.29 43.62 2.40
445 448 1.517694 GGTATCCGCGACGCAAGAA 60.518 57.895 21.35 1.58 43.62 2.52
446 449 2.103538 GGTATCCGCGACGCAAGA 59.896 61.111 21.35 16.02 43.62 3.02
465 468 1.452108 CGAGAAGAATGGGTGCCCC 60.452 63.158 4.59 3.42 45.71 5.80
466 469 0.035439 TTCGAGAAGAATGGGTGCCC 60.035 55.000 0.00 0.00 33.14 5.36
467 470 1.821216 TTTCGAGAAGAATGGGTGCC 58.179 50.000 0.00 0.00 38.86 5.01
468 471 3.440173 TCATTTTCGAGAAGAATGGGTGC 59.560 43.478 14.51 0.00 38.86 5.01
469 472 5.048782 TGTTCATTTTCGAGAAGAATGGGTG 60.049 40.000 14.51 0.00 38.86 4.61
470 473 5.048713 GTGTTCATTTTCGAGAAGAATGGGT 60.049 40.000 14.51 0.00 38.86 4.51
471 474 5.393962 GTGTTCATTTTCGAGAAGAATGGG 58.606 41.667 14.51 0.00 38.86 4.00
472 475 5.082059 CGTGTTCATTTTCGAGAAGAATGG 58.918 41.667 14.51 0.80 38.86 3.16
473 476 5.082059 CCGTGTTCATTTTCGAGAAGAATG 58.918 41.667 0.00 11.15 38.86 2.67
474 477 4.994852 TCCGTGTTCATTTTCGAGAAGAAT 59.005 37.500 0.00 0.00 38.86 2.40
475 478 4.373527 TCCGTGTTCATTTTCGAGAAGAA 58.626 39.130 0.00 0.00 37.01 2.52
476 479 3.985008 TCCGTGTTCATTTTCGAGAAGA 58.015 40.909 0.00 0.00 0.00 2.87
477 480 4.152402 ACATCCGTGTTCATTTTCGAGAAG 59.848 41.667 0.00 0.00 34.01 2.85
478 481 4.062293 ACATCCGTGTTCATTTTCGAGAA 58.938 39.130 0.00 0.00 34.01 2.87
479 482 3.431912 CACATCCGTGTTCATTTTCGAGA 59.568 43.478 0.00 0.00 38.41 4.04
480 483 3.736213 CACATCCGTGTTCATTTTCGAG 58.264 45.455 0.00 0.00 38.41 4.04
481 484 3.804518 CACATCCGTGTTCATTTTCGA 57.195 42.857 0.00 0.00 38.41 3.71
493 496 3.387091 TGCCCGCTACACATCCGT 61.387 61.111 0.00 0.00 0.00 4.69
494 497 2.890474 GTGCCCGCTACACATCCG 60.890 66.667 0.00 0.00 37.96 4.18
495 498 1.521681 GAGTGCCCGCTACACATCC 60.522 63.158 0.00 0.00 40.59 3.51
496 499 0.807667 CTGAGTGCCCGCTACACATC 60.808 60.000 0.00 0.00 40.59 3.06
497 500 1.219124 CTGAGTGCCCGCTACACAT 59.781 57.895 0.00 0.00 40.59 3.21
498 501 2.656646 CTGAGTGCCCGCTACACA 59.343 61.111 0.00 0.00 40.59 3.72
499 502 2.125512 CCTGAGTGCCCGCTACAC 60.126 66.667 0.00 0.00 38.35 2.90
500 503 2.283604 TCCTGAGTGCCCGCTACA 60.284 61.111 0.00 0.00 0.00 2.74
501 504 2.286127 GACTCCTGAGTGCCCGCTAC 62.286 65.000 4.19 0.00 42.66 3.58
502 505 2.037367 ACTCCTGAGTGCCCGCTA 59.963 61.111 0.00 0.00 40.75 4.26
503 506 3.386237 GACTCCTGAGTGCCCGCT 61.386 66.667 4.19 0.00 42.66 5.52
504 507 3.655810 CTGACTCCTGAGTGCCCGC 62.656 68.421 4.19 0.00 42.66 6.13
505 508 2.575993 CTGACTCCTGAGTGCCCG 59.424 66.667 4.19 0.00 42.66 6.13
506 509 1.610673 TCCTGACTCCTGAGTGCCC 60.611 63.158 4.19 0.00 42.66 5.36
507 510 1.188219 TGTCCTGACTCCTGAGTGCC 61.188 60.000 4.19 0.00 42.66 5.01
508 511 0.037790 GTGTCCTGACTCCTGAGTGC 60.038 60.000 4.19 0.00 42.66 4.40
509 512 0.605589 GGTGTCCTGACTCCTGAGTG 59.394 60.000 4.19 0.00 42.66 3.51
510 513 0.543174 GGGTGTCCTGACTCCTGAGT 60.543 60.000 15.70 0.00 45.84 3.41
511 514 1.261238 GGGGTGTCCTGACTCCTGAG 61.261 65.000 15.70 0.00 42.79 3.35
512 515 1.229209 GGGGTGTCCTGACTCCTGA 60.229 63.158 15.70 0.00 42.79 3.86
513 516 1.229336 AGGGGTGTCCTGACTCCTG 60.229 63.158 15.70 0.00 46.07 3.86
514 517 3.288309 AGGGGTGTCCTGACTCCT 58.712 61.111 15.70 9.12 46.07 3.69
522 525 3.883489 GCTATTTTCATACAGGGGTGTCC 59.117 47.826 0.00 0.00 0.00 4.02
523 526 4.523083 TGCTATTTTCATACAGGGGTGTC 58.477 43.478 0.00 0.00 0.00 3.67
524 527 4.584638 TGCTATTTTCATACAGGGGTGT 57.415 40.909 0.00 0.00 0.00 4.16
525 528 7.581213 TTAATGCTATTTTCATACAGGGGTG 57.419 36.000 0.00 0.00 0.00 4.61
526 529 8.602472 TTTTAATGCTATTTTCATACAGGGGT 57.398 30.769 0.00 0.00 0.00 4.95
527 530 9.533253 CTTTTTAATGCTATTTTCATACAGGGG 57.467 33.333 0.00 0.00 0.00 4.79
566 569 0.250295 CAGCCGTCCCTGTCAGAAAA 60.250 55.000 0.00 0.00 0.00 2.29
570 573 4.087892 CCCAGCCGTCCCTGTCAG 62.088 72.222 0.00 0.00 0.00 3.51
573 576 3.083997 GATCCCAGCCGTCCCTGT 61.084 66.667 0.00 0.00 0.00 4.00
574 577 2.446848 ATGATCCCAGCCGTCCCTG 61.447 63.158 0.00 0.00 0.00 4.45
586 651 1.664965 GCCGACGTAGCCATGATCC 60.665 63.158 0.00 0.00 0.00 3.36
613 691 1.668294 CAGAACGGTCAGGAGCACT 59.332 57.895 1.87 0.00 0.00 4.40
614 692 2.029844 GCAGAACGGTCAGGAGCAC 61.030 63.158 1.87 0.00 0.00 4.40
615 693 2.343758 GCAGAACGGTCAGGAGCA 59.656 61.111 1.87 0.00 0.00 4.26
616 694 2.435059 GGCAGAACGGTCAGGAGC 60.435 66.667 1.87 0.40 0.00 4.70
617 695 1.079543 CAGGCAGAACGGTCAGGAG 60.080 63.158 1.87 0.00 0.00 3.69
618 696 2.583441 CCAGGCAGAACGGTCAGGA 61.583 63.158 1.87 0.00 0.00 3.86
619 697 2.046892 CCAGGCAGAACGGTCAGG 60.047 66.667 1.87 0.00 0.00 3.86
620 698 1.669115 CACCAGGCAGAACGGTCAG 60.669 63.158 1.87 0.00 0.00 3.51
667 745 2.230508 CAGACATGCATGCTCCTGTTTT 59.769 45.455 26.53 3.28 0.00 2.43
668 746 1.816835 CAGACATGCATGCTCCTGTTT 59.183 47.619 26.53 11.79 0.00 2.83
669 747 1.003928 TCAGACATGCATGCTCCTGTT 59.996 47.619 28.22 12.16 0.00 3.16
670 748 0.616891 TCAGACATGCATGCTCCTGT 59.383 50.000 28.22 18.48 0.00 4.00
671 749 1.671328 CTTCAGACATGCATGCTCCTG 59.329 52.381 26.53 26.12 0.00 3.86
672 750 2.017623 GCTTCAGACATGCATGCTCCT 61.018 52.381 26.53 17.29 0.00 3.69
673 751 0.381089 GCTTCAGACATGCATGCTCC 59.619 55.000 26.53 15.35 0.00 4.70
674 752 1.092348 TGCTTCAGACATGCATGCTC 58.908 50.000 26.53 20.74 30.30 4.26
675 753 1.763968 ATGCTTCAGACATGCATGCT 58.236 45.000 26.53 20.12 42.78 3.79
723 801 2.206515 TTTTTAGCCATGGCCGCGTG 62.207 55.000 33.14 0.00 43.17 5.34
724 802 1.974343 TTTTTAGCCATGGCCGCGT 60.974 52.632 33.14 17.30 43.17 6.01
725 803 1.516169 GTTTTTAGCCATGGCCGCG 60.516 57.895 33.14 0.00 43.17 6.46
726 804 0.458370 CTGTTTTTAGCCATGGCCGC 60.458 55.000 33.14 16.39 43.17 6.53
727 805 0.173255 CCTGTTTTTAGCCATGGCCG 59.827 55.000 33.14 12.09 43.17 6.13
791 869 4.761058 AGGAAGCCTCGGCCTCGA 62.761 66.667 0.00 0.00 43.86 4.04
792 870 4.214327 GAGGAAGCCTCGGCCTCG 62.214 72.222 0.00 0.00 41.08 4.63
831 909 1.153429 GTTGGTCGATCGGGGAAGG 60.153 63.158 16.41 0.00 0.00 3.46
845 923 4.251268 GGTATTAATAGCTAGCGGGTTGG 58.749 47.826 15.80 0.00 0.00 3.77
852 930 3.858247 CGTGGGGGTATTAATAGCTAGC 58.142 50.000 20.82 6.62 0.00 3.42
866 944 3.917760 GATCGAGAGGCGTGGGGG 61.918 72.222 0.00 0.00 41.80 5.40
906 999 1.882623 GGAAGGAAGAAGGTTGTGCTG 59.117 52.381 0.00 0.00 0.00 4.41
907 1000 1.777272 AGGAAGGAAGAAGGTTGTGCT 59.223 47.619 0.00 0.00 0.00 4.40
908 1001 2.155279 GAGGAAGGAAGAAGGTTGTGC 58.845 52.381 0.00 0.00 0.00 4.57
909 1002 2.373502 AGGAGGAAGGAAGAAGGTTGTG 59.626 50.000 0.00 0.00 0.00 3.33
910 1003 2.707554 AGGAGGAAGGAAGAAGGTTGT 58.292 47.619 0.00 0.00 0.00 3.32
924 1017 0.955178 GAGCGATCGATCAAGGAGGA 59.045 55.000 27.18 0.00 0.00 3.71
925 1018 0.038709 GGAGCGATCGATCAAGGAGG 60.039 60.000 31.78 8.61 31.28 4.30
928 1021 1.707632 GATGGAGCGATCGATCAAGG 58.292 55.000 31.78 10.03 31.28 3.61
933 1026 2.259818 GCCGATGGAGCGATCGAT 59.740 61.111 21.57 14.21 46.72 3.59
991 1084 3.818787 GAGCCCCATTGCTGCGTG 61.819 66.667 0.00 0.00 42.95 5.34
992 1085 4.349503 TGAGCCCCATTGCTGCGT 62.350 61.111 0.00 0.00 42.95 5.24
1006 1099 3.545481 GACGATGCGCACCGTGAG 61.545 66.667 38.18 14.04 39.30 3.51
1031 1133 2.018086 AGGAGGAGGAGGAGGAGGG 61.018 68.421 0.00 0.00 0.00 4.30
1600 1708 1.595109 GGCGACGATGCATGATGGA 60.595 57.895 2.46 0.00 36.28 3.41
1601 1709 2.941333 GGCGACGATGCATGATGG 59.059 61.111 2.46 0.00 36.28 3.51
1619 1727 0.954449 CTGATCTGATCCATGGCGGC 60.954 60.000 14.71 0.00 33.14 6.53
1621 1729 2.028385 TGATCTGATCTGATCCATGGCG 60.028 50.000 29.27 0.00 41.42 5.69
1622 1730 3.697619 TGATCTGATCTGATCCATGGC 57.302 47.619 29.27 12.68 41.42 4.40
1624 1732 5.074584 ACGATGATCTGATCTGATCCATG 57.925 43.478 29.27 22.40 41.42 3.66
1625 1733 4.142425 CGACGATGATCTGATCTGATCCAT 60.142 45.833 29.27 23.42 41.42 3.41
1626 1734 3.190118 CGACGATGATCTGATCTGATCCA 59.810 47.826 29.27 20.87 41.42 3.41
1627 1735 3.190327 ACGACGATGATCTGATCTGATCC 59.810 47.826 29.27 18.65 41.42 3.36
1628 1736 4.402583 GACGACGATGATCTGATCTGATC 58.597 47.826 27.10 27.10 42.19 2.92
1629 1737 3.120373 CGACGACGATGATCTGATCTGAT 60.120 47.826 17.82 14.33 42.66 2.90
1630 1738 2.221981 CGACGACGATGATCTGATCTGA 59.778 50.000 17.82 4.63 42.66 3.27
1631 1739 2.032463 ACGACGACGATGATCTGATCTG 60.032 50.000 15.32 10.45 42.66 2.90
1632 1740 2.214347 ACGACGACGATGATCTGATCT 58.786 47.619 15.32 4.53 42.66 2.75
1662 1770 2.232399 CAATCCAATCCGATCCATGCA 58.768 47.619 0.00 0.00 0.00 3.96
1663 1771 1.542915 CCAATCCAATCCGATCCATGC 59.457 52.381 0.00 0.00 0.00 4.06
1664 1772 3.144657 TCCAATCCAATCCGATCCATG 57.855 47.619 0.00 0.00 0.00 3.66
1665 1773 4.393239 AATCCAATCCAATCCGATCCAT 57.607 40.909 0.00 0.00 0.00 3.41
1666 1774 3.882102 AATCCAATCCAATCCGATCCA 57.118 42.857 0.00 0.00 0.00 3.41
1667 1775 3.507622 GGAAATCCAATCCAATCCGATCC 59.492 47.826 0.00 0.00 36.92 3.36
1668 1776 4.401925 AGGAAATCCAATCCAATCCGATC 58.598 43.478 1.67 0.00 39.55 3.69
1669 1777 4.401925 GAGGAAATCCAATCCAATCCGAT 58.598 43.478 1.67 0.00 39.55 4.18
1670 1778 3.744214 CGAGGAAATCCAATCCAATCCGA 60.744 47.826 1.67 0.00 39.55 4.55
1671 1779 2.549754 CGAGGAAATCCAATCCAATCCG 59.450 50.000 1.67 0.00 39.55 4.18
1696 1806 6.245115 TCAATAATGAACGATGGATGATGC 57.755 37.500 0.00 0.00 30.99 3.91
1765 1875 4.018870 AGAAGAAGAAGAAGATGGGGTTCC 60.019 45.833 0.00 0.00 0.00 3.62
1799 1910 4.685165 TGGACAATCGATCGAAAACGTAAA 59.315 37.500 23.50 5.88 0.00 2.01
1800 1911 4.236147 TGGACAATCGATCGAAAACGTAA 58.764 39.130 23.50 2.75 0.00 3.18
1801 1912 3.835779 TGGACAATCGATCGAAAACGTA 58.164 40.909 23.50 5.15 0.00 3.57
1802 1913 2.679450 TGGACAATCGATCGAAAACGT 58.321 42.857 23.50 15.89 0.00 3.99
1803 1914 3.925688 ATGGACAATCGATCGAAAACG 57.074 42.857 23.50 12.78 0.00 3.60
1804 1915 6.194692 GCTTTTATGGACAATCGATCGAAAAC 59.805 38.462 23.50 13.22 0.00 2.43
1805 1916 6.255215 GCTTTTATGGACAATCGATCGAAAA 58.745 36.000 23.50 12.23 0.00 2.29
1806 1917 5.501736 CGCTTTTATGGACAATCGATCGAAA 60.502 40.000 23.50 6.19 0.00 3.46
1841 1952 4.823442 TGATGGTGATCAGTAAATCATGGC 59.177 41.667 0.00 0.00 37.93 4.40
1923 2040 8.344831 CACAAATTCATCTTTGTACAGACAGAA 58.655 33.333 0.00 0.64 45.18 3.02
1924 2041 7.498900 ACACAAATTCATCTTTGTACAGACAGA 59.501 33.333 0.00 0.00 45.18 3.41
1925 2042 7.642669 ACACAAATTCATCTTTGTACAGACAG 58.357 34.615 0.00 0.00 45.18 3.51
1926 2043 7.566760 ACACAAATTCATCTTTGTACAGACA 57.433 32.000 0.00 0.00 45.18 3.41
1993 2497 8.138712 GGATCGATTTGTTTCTAGATCAGTAGT 58.861 37.037 0.00 0.00 36.99 2.73
1996 2500 6.284459 GGGATCGATTTGTTTCTAGATCAGT 58.716 40.000 0.00 0.00 36.99 3.41
1997 2501 5.403766 CGGGATCGATTTGTTTCTAGATCAG 59.596 44.000 0.00 0.00 36.99 2.90
1999 2503 4.686554 CCGGGATCGATTTGTTTCTAGATC 59.313 45.833 0.00 0.00 39.00 2.75
2000 2504 4.632153 CCGGGATCGATTTGTTTCTAGAT 58.368 43.478 0.00 0.00 39.00 1.98
2015 2634 1.043816 TCTGAATCTCTGCCGGGATC 58.956 55.000 2.18 0.00 0.00 3.36
2016 2635 1.347050 CATCTGAATCTCTGCCGGGAT 59.653 52.381 2.18 0.00 0.00 3.85
2017 2636 0.755079 CATCTGAATCTCTGCCGGGA 59.245 55.000 2.18 0.00 0.00 5.14
2021 2640 4.499357 GGCAAAATCATCTGAATCTCTGCC 60.499 45.833 0.00 0.00 38.89 4.85
2022 2641 4.499357 GGGCAAAATCATCTGAATCTCTGC 60.499 45.833 0.00 0.00 0.00 4.26
2023 2642 4.888239 AGGGCAAAATCATCTGAATCTCTG 59.112 41.667 0.00 0.00 0.00 3.35
2041 2666 4.019051 TCAAATTCAGAGATTCTCAGGGCA 60.019 41.667 15.83 0.00 32.06 5.36
2188 2847 9.407380 CTGCTATACATATAGTGAGAGGAAGAT 57.593 37.037 7.57 0.00 38.30 2.40
2259 2918 1.939785 GCTCGGTAGCGACGACATG 60.940 63.158 13.94 3.70 39.39 3.21
2271 2930 1.617947 GGAGGAAGATGTGGCTCGGT 61.618 60.000 0.00 0.00 0.00 4.69
2274 2933 1.134551 GTGAGGAGGAAGATGTGGCTC 60.135 57.143 0.00 0.00 0.00 4.70
2278 2937 0.460987 GCGGTGAGGAGGAAGATGTG 60.461 60.000 0.00 0.00 0.00 3.21
2296 2955 2.973052 GAATAAGAGGGCGGCGGC 60.973 66.667 26.59 26.59 38.90 6.53
2300 2959 1.227973 GGCAGGAATAAGAGGGCGG 60.228 63.158 0.00 0.00 0.00 6.13
2373 3032 1.953138 GCAGGTCTCGGCGATGATG 60.953 63.158 11.27 8.57 0.00 3.07
2433 3092 3.760035 GAGAGGGAGGCGACGCAA 61.760 66.667 23.09 0.00 0.00 4.85
2493 3152 2.178890 CAGCTTGGCCGAGATGAGC 61.179 63.158 31.04 12.74 35.10 4.26


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.