Multiple sequence alignment - TraesCS6B01G012100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G012100 chr6B 100.000 6346 0 0 1 6346 7156830 7150485 0.000000e+00 11719.0
1 TraesCS6B01G012100 chr6B 99.650 1712 6 0 2519 4230 7102073 7100362 0.000000e+00 3129.0
2 TraesCS6B01G012100 chr6B 99.623 1325 5 0 4244 5568 7100261 7098937 0.000000e+00 2420.0
3 TraesCS6B01G012100 chr6B 86.824 1943 189 34 3735 5638 6851385 6853299 0.000000e+00 2108.0
4 TraesCS6B01G012100 chr6B 87.125 1934 118 43 249 2133 6848355 6850206 0.000000e+00 2071.0
5 TraesCS6B01G012100 chr6B 100.000 812 0 0 3419 4230 7107235 7106424 0.000000e+00 1500.0
6 TraesCS6B01G012100 chr6B 93.795 967 53 4 2504 3464 6850413 6851378 0.000000e+00 1447.0
7 TraesCS6B01G012100 chr6B 100.000 425 0 0 4244 4668 7109069 7108645 0.000000e+00 785.0
8 TraesCS6B01G012100 chr6B 82.105 855 137 13 2577 3422 23640461 23641308 0.000000e+00 717.0
9 TraesCS6B01G012100 chr6B 99.229 389 3 0 2519 2907 7110248 7109860 0.000000e+00 702.0
10 TraesCS6B01G012100 chr6B 92.857 392 22 6 5959 6346 569030386 569030775 1.190000e-156 564.0
11 TraesCS6B01G012100 chr6B 90.838 382 26 4 5370 5747 6878496 6878872 2.640000e-138 503.0
12 TraesCS6B01G012100 chr6B 79.102 579 111 9 4246 4816 23641950 23642526 2.150000e-104 390.0
13 TraesCS6B01G012100 chr6B 79.727 513 76 17 3714 4204 23641367 23641873 4.710000e-91 346.0
14 TraesCS6B01G012100 chr6B 88.000 300 21 8 5050 5347 6877966 6878252 2.190000e-89 340.0
15 TraesCS6B01G012100 chr6B 95.135 185 6 2 2203 2387 6850230 6850411 8.050000e-74 289.0
16 TraesCS6B01G012100 chr6B 98.361 122 1 1 2389 2510 181705046 181705166 4.980000e-51 213.0
17 TraesCS6B01G012100 chr6B 91.367 139 8 4 2371 2506 551930010 551930147 3.020000e-43 187.0
18 TraesCS6B01G012100 chr6B 89.189 111 3 1 55 165 6848092 6848193 5.160000e-26 130.0
19 TraesCS6B01G012100 chr6B 76.812 207 29 11 1596 1793 19475624 19475820 1.460000e-16 99.0
20 TraesCS6B01G012100 chr6D 86.842 1710 137 51 224 1875 3586760 3588439 0.000000e+00 1831.0
21 TraesCS6B01G012100 chr6D 87.870 1352 111 33 3599 4939 3589874 3591183 0.000000e+00 1539.0
22 TraesCS6B01G012100 chr6D 90.816 980 72 10 2546 3515 3588910 3589881 0.000000e+00 1295.0
23 TraesCS6B01G012100 chr6D 82.131 873 138 11 2577 3440 13100211 13099348 0.000000e+00 732.0
24 TraesCS6B01G012100 chr6D 80.969 578 98 11 4246 4816 13098478 13097906 1.260000e-121 448.0
25 TraesCS6B01G012100 chr6D 78.973 623 95 28 1304 1907 13101092 13100487 5.960000e-105 392.0
26 TraesCS6B01G012100 chr6D 86.250 320 36 6 5033 5347 3591379 3591695 2.190000e-89 340.0
27 TraesCS6B01G012100 chr6D 88.014 292 18 6 5348 5638 3591731 3592006 4.740000e-86 329.0
28 TraesCS6B01G012100 chr6D 81.026 390 62 8 3804 4186 13099296 13098912 3.720000e-77 300.0
29 TraesCS6B01G012100 chr6A 84.239 1859 199 59 224 2040 2397645 2399451 0.000000e+00 1724.0
30 TraesCS6B01G012100 chr6A 93.566 917 51 4 2553 3464 2399856 2400769 0.000000e+00 1360.0
31 TraesCS6B01G012100 chr6A 82.549 871 132 13 2577 3440 14375917 14375060 0.000000e+00 749.0
32 TraesCS6B01G012100 chr6A 79.437 1031 166 33 3804 4816 14375008 14374006 0.000000e+00 688.0
33 TraesCS6B01G012100 chr6A 83.420 772 94 21 4277 5032 2401430 2402183 0.000000e+00 686.0
34 TraesCS6B01G012100 chr6A 82.625 518 67 17 3749 4255 2400788 2401293 2.720000e-118 436.0
35 TraesCS6B01G012100 chr6A 78.740 635 93 30 1295 1907 14376802 14376188 2.770000e-103 387.0
36 TraesCS6B01G012100 chr6A 88.435 294 24 6 5348 5638 2402565 2402851 4.710000e-91 346.0
37 TraesCS6B01G012100 chr6A 86.971 307 31 4 5045 5347 2402228 2402529 2.830000e-88 337.0
38 TraesCS6B01G012100 chr6A 98.374 123 1 1 2384 2505 601207219 601207341 1.390000e-51 215.0
39 TraesCS6B01G012100 chr6A 78.151 119 25 1 2256 2374 2399637 2399754 2.450000e-09 75.0
40 TraesCS6B01G012100 chr6A 100.000 30 0 0 1540 1569 247559927 247559956 8.890000e-04 56.5
41 TraesCS6B01G012100 chrUn 100.000 678 0 0 4888 5565 339230230 339230907 0.000000e+00 1253.0
42 TraesCS6B01G012100 chrUn 94.656 131 7 0 2379 2509 287061593 287061723 3.000000e-48 204.0
43 TraesCS6B01G012100 chr7B 87.539 634 41 10 5748 6346 16528653 16529283 0.000000e+00 699.0
44 TraesCS6B01G012100 chr7B 86.438 612 49 24 5748 6346 167606877 167607467 1.930000e-179 640.0
45 TraesCS6B01G012100 chr7B 90.722 388 33 3 5961 6346 42873360 42873746 1.220000e-141 514.0
46 TraesCS6B01G012100 chr7B 96.800 125 4 0 2385 2509 630104521 630104645 6.450000e-50 209.0
47 TraesCS6B01G012100 chr7B 96.094 128 4 1 2389 2516 60039300 60039174 2.320000e-49 207.0
48 TraesCS6B01G012100 chr7B 90.769 130 11 1 2377 2506 610616000 610615872 8.460000e-39 172.0
49 TraesCS6B01G012100 chr3B 87.204 633 40 22 5748 6345 227110488 227111114 0.000000e+00 682.0
50 TraesCS6B01G012100 chr3B 91.990 387 26 5 5961 6344 528712478 528712862 7.240000e-149 538.0
51 TraesCS6B01G012100 chr3B 94.030 134 8 0 2373 2506 755450188 755450321 3.000000e-48 204.0
52 TraesCS6B01G012100 chr2B 86.435 634 43 24 5748 6346 782117907 782118532 0.000000e+00 654.0
53 TraesCS6B01G012100 chr2B 91.710 386 25 6 5967 6346 56924202 56924586 4.360000e-146 529.0
54 TraesCS6B01G012100 chr2B 91.451 386 25 7 5967 6346 641655291 641655674 2.030000e-144 523.0
55 TraesCS6B01G012100 chr2B 94.615 130 6 1 2376 2505 653603267 653603139 3.880000e-47 200.0
56 TraesCS6B01G012100 chr2B 91.608 143 9 3 2371 2512 620927706 620927846 1.810000e-45 195.0
57 TraesCS6B01G012100 chr2B 93.701 127 7 1 2380 2505 184790439 184790565 8.400000e-44 189.0
58 TraesCS6B01G012100 chr5B 93.333 210 13 1 5746 5955 15903795 15904003 6.180000e-80 309.0
59 TraesCS6B01G012100 chr5B 93.659 205 13 0 5751 5955 15912991 15913195 2.220000e-79 307.0
60 TraesCS6B01G012100 chr5B 93.301 209 13 1 5747 5955 15921510 15921717 2.220000e-79 307.0
61 TraesCS6B01G012100 chr5B 92.344 209 15 1 5746 5954 15937731 15937938 4.810000e-76 296.0
62 TraesCS6B01G012100 chr5B 91.589 214 17 1 5747 5960 517657327 517657539 1.730000e-75 294.0
63 TraesCS6B01G012100 chr5B 92.195 205 16 0 5751 5955 15969009 15969213 2.240000e-74 291.0
64 TraesCS6B01G012100 chr4A 72.973 851 197 26 2577 3415 717741166 717740337 3.770000e-67 267.0
65 TraesCS6B01G012100 chr4A 88.194 144 17 0 1519 1662 717741645 717741502 8.460000e-39 172.0
66 TraesCS6B01G012100 chr4B 97.619 126 1 2 2382 2505 9944469 9944344 1.390000e-51 215.0
67 TraesCS6B01G012100 chr1B 98.361 122 2 0 2386 2507 137651681 137651560 1.390000e-51 215.0
68 TraesCS6B01G012100 chr7A 74.849 497 111 13 2925 3415 16300846 16300358 4.980000e-51 213.0
69 TraesCS6B01G012100 chr5D 96.124 129 4 1 2382 2509 532749696 532749824 6.450000e-50 209.0
70 TraesCS6B01G012100 chr3A 93.617 141 6 3 2370 2509 642927881 642927743 2.320000e-49 207.0
71 TraesCS6B01G012100 chr3D 94.656 131 7 0 2379 2509 570116239 570116369 3.000000e-48 204.0
72 TraesCS6B01G012100 chr7D 74.447 497 113 13 2925 3415 16924828 16924340 1.080000e-47 202.0
73 TraesCS6B01G012100 chr7D 88.194 144 17 0 1519 1662 16925632 16925489 8.460000e-39 172.0
74 TraesCS6B01G012100 chr5A 100.000 30 0 0 1540 1569 161403640 161403611 8.890000e-04 56.5
75 TraesCS6B01G012100 chr5A 100.000 30 0 0 1540 1569 179211881 179211852 8.890000e-04 56.5
76 TraesCS6B01G012100 chr1A 100.000 30 0 0 1540 1569 502074342 502074313 8.890000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G012100 chr6B 7150485 7156830 6345 True 11719.000000 11719 100.000000 1 6346 1 chr6B.!!$R1 6345
1 TraesCS6B01G012100 chr6B 7098937 7102073 3136 True 2774.500000 3129 99.636500 2519 5568 2 chr6B.!!$R2 3049
2 TraesCS6B01G012100 chr6B 6848092 6853299 5207 False 1209.000000 2108 90.413600 55 5638 5 chr6B.!!$F5 5583
3 TraesCS6B01G012100 chr6B 7106424 7110248 3824 True 995.666667 1500 99.743000 2519 4668 3 chr6B.!!$R3 2149
4 TraesCS6B01G012100 chr6B 23640461 23642526 2065 False 484.333333 717 80.311333 2577 4816 3 chr6B.!!$F7 2239
5 TraesCS6B01G012100 chr6B 6877966 6878872 906 False 421.500000 503 89.419000 5050 5747 2 chr6B.!!$F6 697
6 TraesCS6B01G012100 chr6D 3586760 3592006 5246 False 1066.800000 1831 87.958400 224 5638 5 chr6D.!!$F1 5414
7 TraesCS6B01G012100 chr6D 13097906 13101092 3186 True 468.000000 732 80.774750 1304 4816 4 chr6D.!!$R1 3512
8 TraesCS6B01G012100 chr6A 2397645 2402851 5206 False 709.142857 1724 85.343857 224 5638 7 chr6A.!!$F3 5414
9 TraesCS6B01G012100 chr6A 14374006 14376802 2796 True 608.000000 749 80.242000 1295 4816 3 chr6A.!!$R1 3521
10 TraesCS6B01G012100 chrUn 339230230 339230907 677 False 1253.000000 1253 100.000000 4888 5565 1 chrUn.!!$F2 677
11 TraesCS6B01G012100 chr7B 16528653 16529283 630 False 699.000000 699 87.539000 5748 6346 1 chr7B.!!$F1 598
12 TraesCS6B01G012100 chr7B 167606877 167607467 590 False 640.000000 640 86.438000 5748 6346 1 chr7B.!!$F3 598
13 TraesCS6B01G012100 chr3B 227110488 227111114 626 False 682.000000 682 87.204000 5748 6345 1 chr3B.!!$F1 597
14 TraesCS6B01G012100 chr2B 782117907 782118532 625 False 654.000000 654 86.435000 5748 6346 1 chr2B.!!$F5 598
15 TraesCS6B01G012100 chr4A 717740337 717741645 1308 True 219.500000 267 80.583500 1519 3415 2 chr4A.!!$R1 1896

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
24 25 0.032952 TGTCCCATCGTATTAGCGCC 59.967 55.0 2.29 0.00 0.00 6.53 F
27 28 0.034896 CCCATCGTATTAGCGCCCTT 59.965 55.0 2.29 0.00 0.00 3.95 F
180 192 0.035598 TCAATTGGTTTCTCCGCCGA 59.964 50.0 5.42 0.00 39.52 5.54 F
705 847 0.107017 GGGCCTTAATCAGCTGCAGA 60.107 55.0 20.43 0.00 0.00 4.26 F
2404 2635 0.038744 AAGTACTTCCTCCGTCCGGA 59.961 55.0 0.00 0.00 42.90 5.14 F
2501 2732 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.0 13.64 4.95 46.06 4.20 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1261 1424 0.445436 GTCAGCAAGAAGGCATCACG 59.555 55.000 0.00 0.0 35.83 4.35 R
1610 1785 1.340017 GCAAGGATGGCAGAAGTGGTA 60.340 52.381 0.00 0.0 32.79 3.25 R
1637 1812 4.019174 CCTTAACACCCTCAGCAATCATT 58.981 43.478 0.00 0.0 0.00 2.57 R
2482 2713 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.0 44.66 2.12 R
3830 6496 9.476202 AGATTGAACAAAACATTACTTAAAGCC 57.524 29.630 0.00 0.0 0.00 4.35 R
5650 9283 4.342862 ACAATAGCGAGCATTACCATCT 57.657 40.909 0.00 0.0 0.00 2.90 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 2.165319 GGGTGTCCCATCGTATTAGC 57.835 55.000 0.00 0.00 44.65 3.09
22 23 1.604693 GGGTGTCCCATCGTATTAGCG 60.605 57.143 0.00 0.00 44.65 4.26
23 24 1.137513 GTGTCCCATCGTATTAGCGC 58.862 55.000 0.00 0.00 0.00 5.92
24 25 0.032952 TGTCCCATCGTATTAGCGCC 59.967 55.000 2.29 0.00 0.00 6.53
25 26 0.669625 GTCCCATCGTATTAGCGCCC 60.670 60.000 2.29 0.00 0.00 6.13
26 27 0.830444 TCCCATCGTATTAGCGCCCT 60.830 55.000 2.29 0.00 0.00 5.19
27 28 0.034896 CCCATCGTATTAGCGCCCTT 59.965 55.000 2.29 0.00 0.00 3.95
28 29 1.274167 CCCATCGTATTAGCGCCCTTA 59.726 52.381 2.29 0.00 0.00 2.69
29 30 2.334838 CCATCGTATTAGCGCCCTTAC 58.665 52.381 2.29 2.20 0.00 2.34
30 31 2.029290 CCATCGTATTAGCGCCCTTACT 60.029 50.000 2.29 0.00 0.00 2.24
31 32 3.554337 CCATCGTATTAGCGCCCTTACTT 60.554 47.826 2.29 0.00 0.00 2.24
32 33 4.321452 CCATCGTATTAGCGCCCTTACTTA 60.321 45.833 2.29 0.00 0.00 2.24
33 34 4.916983 TCGTATTAGCGCCCTTACTTAA 57.083 40.909 2.29 0.00 0.00 1.85
34 35 5.458041 TCGTATTAGCGCCCTTACTTAAT 57.542 39.130 2.29 2.15 0.00 1.40
35 36 5.464168 TCGTATTAGCGCCCTTACTTAATC 58.536 41.667 2.29 0.00 0.00 1.75
36 37 4.322804 CGTATTAGCGCCCTTACTTAATCG 59.677 45.833 2.29 2.85 0.00 3.34
37 38 4.595762 ATTAGCGCCCTTACTTAATCGA 57.404 40.909 2.29 0.00 0.00 3.59
38 39 2.510768 AGCGCCCTTACTTAATCGAG 57.489 50.000 2.29 0.00 0.00 4.04
39 40 1.755380 AGCGCCCTTACTTAATCGAGT 59.245 47.619 2.29 0.00 0.00 4.18
40 41 2.167900 AGCGCCCTTACTTAATCGAGTT 59.832 45.455 2.29 0.00 0.00 3.01
41 42 2.934553 GCGCCCTTACTTAATCGAGTTT 59.065 45.455 0.00 0.00 0.00 2.66
42 43 3.242316 GCGCCCTTACTTAATCGAGTTTG 60.242 47.826 0.00 0.00 0.00 2.93
43 44 3.930848 CGCCCTTACTTAATCGAGTTTGT 59.069 43.478 0.00 0.00 0.00 2.83
44 45 5.104374 CGCCCTTACTTAATCGAGTTTGTA 58.896 41.667 0.00 0.00 0.00 2.41
45 46 5.577945 CGCCCTTACTTAATCGAGTTTGTAA 59.422 40.000 0.00 0.57 0.00 2.41
46 47 6.091169 CGCCCTTACTTAATCGAGTTTGTAAA 59.909 38.462 0.00 0.00 0.00 2.01
47 48 7.360269 CGCCCTTACTTAATCGAGTTTGTAAAA 60.360 37.037 0.00 0.00 0.00 1.52
48 49 8.291740 GCCCTTACTTAATCGAGTTTGTAAAAA 58.708 33.333 0.00 0.00 0.00 1.94
49 50 9.603298 CCCTTACTTAATCGAGTTTGTAAAAAC 57.397 33.333 0.00 0.00 0.00 2.43
76 77 3.316308 GCACATATTCTTTGCCCACCTAG 59.684 47.826 0.00 0.00 0.00 3.02
98 99 4.082523 CAAAGCGAGGCGAGGGGA 62.083 66.667 0.00 0.00 0.00 4.81
99 100 3.775654 AAAGCGAGGCGAGGGGAG 61.776 66.667 0.00 0.00 0.00 4.30
104 105 4.459089 GAGGCGAGGGGAGTGCAC 62.459 72.222 9.40 9.40 0.00 4.57
171 183 3.069872 TGTCAGCAGCATTCAATTGGTTT 59.930 39.130 5.42 0.00 0.00 3.27
180 192 0.035598 TCAATTGGTTTCTCCGCCGA 59.964 50.000 5.42 0.00 39.52 5.54
184 196 1.017177 TTGGTTTCTCCGCCGATTCG 61.017 55.000 0.00 0.00 39.52 3.34
192 204 4.044336 TCTCCGCCGATTCGTTTATTTA 57.956 40.909 5.20 0.00 0.00 1.40
194 206 5.051816 TCTCCGCCGATTCGTTTATTTATT 58.948 37.500 5.20 0.00 0.00 1.40
195 207 5.524646 TCTCCGCCGATTCGTTTATTTATTT 59.475 36.000 5.20 0.00 0.00 1.40
196 208 6.037391 TCTCCGCCGATTCGTTTATTTATTTT 59.963 34.615 5.20 0.00 0.00 1.82
197 209 6.553524 TCCGCCGATTCGTTTATTTATTTTT 58.446 32.000 5.20 0.00 0.00 1.94
198 210 7.692088 TCCGCCGATTCGTTTATTTATTTTTA 58.308 30.769 5.20 0.00 0.00 1.52
199 211 8.344098 TCCGCCGATTCGTTTATTTATTTTTAT 58.656 29.630 5.20 0.00 0.00 1.40
200 212 8.960075 CCGCCGATTCGTTTATTTATTTTTATT 58.040 29.630 5.20 0.00 0.00 1.40
215 227 6.944234 ATTTTTATTTAAGCCCGAGAGAGG 57.056 37.500 0.00 0.00 0.00 3.69
265 344 0.109039 GACGCACTCCTCTTCCTCAC 60.109 60.000 0.00 0.00 0.00 3.51
269 348 0.610687 CACTCCTCTTCCTCACCCAC 59.389 60.000 0.00 0.00 0.00 4.61
270 349 0.489567 ACTCCTCTTCCTCACCCACT 59.510 55.000 0.00 0.00 0.00 4.00
271 350 1.190643 CTCCTCTTCCTCACCCACTC 58.809 60.000 0.00 0.00 0.00 3.51
272 351 0.487325 TCCTCTTCCTCACCCACTCA 59.513 55.000 0.00 0.00 0.00 3.41
324 403 1.107114 CCCATGTCTCTGCTACTCGT 58.893 55.000 0.00 0.00 0.00 4.18
326 405 1.745653 CCATGTCTCTGCTACTCGTGA 59.254 52.381 0.00 0.00 0.00 4.35
406 524 2.094182 TGCGGAGTGGTATTCAGTTCTC 60.094 50.000 0.00 0.00 0.00 2.87
460 591 1.341976 GGGTGGGTGTATGCTCCAATT 60.342 52.381 4.25 0.00 31.73 2.32
472 603 6.931281 TGTATGCTCCAATTACTAATCAGAGC 59.069 38.462 18.07 18.07 42.12 4.09
473 604 5.357742 TGCTCCAATTACTAATCAGAGCA 57.642 39.130 21.15 21.15 45.71 4.26
474 605 5.363101 TGCTCCAATTACTAATCAGAGCAG 58.637 41.667 21.15 0.00 44.35 4.24
475 606 4.754114 GCTCCAATTACTAATCAGAGCAGG 59.246 45.833 19.13 0.00 41.73 4.85
476 607 5.296151 TCCAATTACTAATCAGAGCAGGG 57.704 43.478 0.00 0.00 0.00 4.45
477 608 3.817647 CCAATTACTAATCAGAGCAGGGC 59.182 47.826 0.00 0.00 0.00 5.19
478 609 4.454678 CAATTACTAATCAGAGCAGGGCA 58.545 43.478 0.00 0.00 0.00 5.36
479 610 3.827008 TTACTAATCAGAGCAGGGCAG 57.173 47.619 0.00 0.00 0.00 4.85
480 611 0.835941 ACTAATCAGAGCAGGGCAGG 59.164 55.000 0.00 0.00 0.00 4.85
481 612 0.108207 CTAATCAGAGCAGGGCAGGG 59.892 60.000 0.00 0.00 0.00 4.45
508 649 2.721167 GGCAGGGGATTTTTCGCCC 61.721 63.158 5.55 0.00 42.92 6.13
517 658 3.118149 GGGATTTTTCGCCCTTCCTAGTA 60.118 47.826 0.00 0.00 41.31 1.82
542 684 2.433444 TACCCTGAATATCCTGGGGG 57.567 55.000 8.80 3.74 46.17 5.40
566 708 2.545596 ATCGCCGTATCCGTGCGTA 61.546 57.895 11.77 2.39 46.52 4.42
568 710 2.362047 CGCCGTATCCGTGCGTATG 61.362 63.158 5.62 0.00 43.72 2.39
569 711 1.008194 GCCGTATCCGTGCGTATGA 60.008 57.895 0.00 0.00 0.00 2.15
634 776 5.870978 GCTTAATTAGTTAGACACGAACCCA 59.129 40.000 0.00 0.00 0.00 4.51
638 780 1.414919 AGTTAGACACGAACCCAGCAA 59.585 47.619 0.00 0.00 0.00 3.91
665 807 3.940221 GTCGGATCACTCGGCTATAGTAT 59.060 47.826 0.84 0.00 0.00 2.12
670 812 5.651139 GGATCACTCGGCTATAGTATGGTAA 59.349 44.000 0.84 0.00 0.00 2.85
705 847 0.107017 GGGCCTTAATCAGCTGCAGA 60.107 55.000 20.43 0.00 0.00 4.26
706 848 1.683011 GGGCCTTAATCAGCTGCAGAA 60.683 52.381 20.43 1.51 0.00 3.02
707 849 2.305009 GGCCTTAATCAGCTGCAGAAT 58.695 47.619 20.43 4.23 0.00 2.40
714 856 1.134075 CAGCTGCAGAATCGCACAC 59.866 57.895 20.43 0.00 36.86 3.82
715 857 1.301953 AGCTGCAGAATCGCACACA 60.302 52.632 20.43 0.00 36.86 3.72
716 858 0.675837 AGCTGCAGAATCGCACACAT 60.676 50.000 20.43 0.00 36.86 3.21
717 859 0.522705 GCTGCAGAATCGCACACATG 60.523 55.000 20.43 0.00 36.86 3.21
743 895 1.293498 GACCAGCAGATCACACCGT 59.707 57.895 0.00 0.00 0.00 4.83
744 896 0.320771 GACCAGCAGATCACACCGTT 60.321 55.000 0.00 0.00 0.00 4.44
745 897 0.108585 ACCAGCAGATCACACCGTTT 59.891 50.000 0.00 0.00 0.00 3.60
763 920 3.060363 CGTTTTACAGTACAGTCGATGCC 59.940 47.826 0.00 0.00 0.00 4.40
766 923 0.108615 ACAGTACAGTCGATGCCAGC 60.109 55.000 0.00 0.00 0.00 4.85
825 982 1.612199 GGGCCGGTGTCAGAATTGTTA 60.612 52.381 1.90 0.00 0.00 2.41
827 984 2.147958 GCCGGTGTCAGAATTGTTACA 58.852 47.619 1.90 0.00 0.00 2.41
830 987 2.159627 CGGTGTCAGAATTGTTACAGCC 59.840 50.000 11.99 6.16 37.11 4.85
849 1010 1.201647 CCATTGCTCTGCTTGTTCTGG 59.798 52.381 0.00 0.00 0.00 3.86
852 1013 0.604780 TGCTCTGCTTGTTCTGGAGC 60.605 55.000 0.00 0.00 46.41 4.70
915 1077 8.978874 TTGACTTATGCACCATGTATTATTCT 57.021 30.769 0.00 0.00 0.00 2.40
916 1078 8.607441 TGACTTATGCACCATGTATTATTCTC 57.393 34.615 0.00 0.00 0.00 2.87
917 1079 7.384932 TGACTTATGCACCATGTATTATTCTCG 59.615 37.037 0.00 0.00 0.00 4.04
919 1081 8.364894 ACTTATGCACCATGTATTATTCTCGTA 58.635 33.333 0.00 0.00 0.00 3.43
927 1089 9.909644 ACCATGTATTATTCTCGTATTACTGTC 57.090 33.333 0.00 0.00 0.00 3.51
970 1133 7.036996 TCATGCTGATACAAACTGTTTGAAA 57.963 32.000 33.05 22.27 43.26 2.69
972 1135 8.791675 TCATGCTGATACAAACTGTTTGAAATA 58.208 29.630 33.05 18.80 43.26 1.40
979 1142 2.825086 ACTGTTTGAAATATCGCGCC 57.175 45.000 0.00 0.00 0.00 6.53
986 1149 0.503117 GAAATATCGCGCCGACAGAC 59.497 55.000 0.00 0.00 39.18 3.51
993 1156 2.442188 GCGCCGACAGACCGTTAAG 61.442 63.158 0.00 0.00 0.00 1.85
1114 1277 4.680237 CGTTGGTCTCGCTGCCCA 62.680 66.667 0.00 0.00 0.00 5.36
1141 1304 2.747855 GGCCAGGGAGAAAGTGCG 60.748 66.667 0.00 0.00 0.00 5.34
1144 1307 1.672356 CCAGGGAGAAAGTGCGGTG 60.672 63.158 0.00 0.00 0.00 4.94
1185 1348 4.327680 AGGAGCTGTATTTCAACAAGGAC 58.672 43.478 0.00 0.00 0.00 3.85
1197 1360 0.396139 ACAAGGACGGGTCGGCTATA 60.396 55.000 0.00 0.00 34.07 1.31
1246 1409 1.868997 CCATCGTTCATATGCCGCC 59.131 57.895 0.00 0.00 0.00 6.13
1247 1410 0.603707 CCATCGTTCATATGCCGCCT 60.604 55.000 0.00 0.00 0.00 5.52
1252 1415 1.299850 TTCATATGCCGCCTCGTCG 60.300 57.895 0.00 0.00 0.00 5.12
1261 1424 1.615107 CCGCCTCGTCGTTTCAGTTC 61.615 60.000 0.00 0.00 0.00 3.01
1269 1432 1.136336 GTCGTTTCAGTTCGTGATGCC 60.136 52.381 0.00 0.00 34.17 4.40
1271 1434 1.531149 CGTTTCAGTTCGTGATGCCTT 59.469 47.619 0.00 0.00 34.17 4.35
1284 1447 2.157738 GATGCCTTCTTGCTGACTTGT 58.842 47.619 0.00 0.00 0.00 3.16
1285 1448 2.057137 TGCCTTCTTGCTGACTTGTT 57.943 45.000 0.00 0.00 0.00 2.83
1286 1449 3.207265 TGCCTTCTTGCTGACTTGTTA 57.793 42.857 0.00 0.00 0.00 2.41
1287 1450 3.754965 TGCCTTCTTGCTGACTTGTTAT 58.245 40.909 0.00 0.00 0.00 1.89
1288 1451 4.144297 TGCCTTCTTGCTGACTTGTTATT 58.856 39.130 0.00 0.00 0.00 1.40
1289 1452 4.584325 TGCCTTCTTGCTGACTTGTTATTT 59.416 37.500 0.00 0.00 0.00 1.40
1290 1453 5.068987 TGCCTTCTTGCTGACTTGTTATTTT 59.931 36.000 0.00 0.00 0.00 1.82
1394 1557 2.093447 CCTTGAGAGCAAATACGGGTCT 60.093 50.000 0.00 0.00 45.08 3.85
1418 1581 4.024556 CCTAGAATTGTCAATGATGGCGTC 60.025 45.833 0.00 0.00 32.34 5.19
1436 1599 0.817634 TCACGGTGGCAAAAGAGGTG 60.818 55.000 8.50 0.00 0.00 4.00
1459 1622 3.849911 TGTTCTGTCAGGAGATTTAGCG 58.150 45.455 0.00 0.00 0.00 4.26
1461 1624 1.202302 TCTGTCAGGAGATTTAGCGCG 60.202 52.381 0.00 0.00 0.00 6.86
1477 1652 2.004583 CGCGTCATTTCTTACCCTGA 57.995 50.000 0.00 0.00 0.00 3.86
1478 1653 2.550978 CGCGTCATTTCTTACCCTGAT 58.449 47.619 0.00 0.00 0.00 2.90
1492 1667 4.974645 ACCCTGATGACTGTGAACTTTA 57.025 40.909 0.00 0.00 0.00 1.85
1495 1670 4.932200 CCCTGATGACTGTGAACTTTACTC 59.068 45.833 0.00 0.00 0.00 2.59
1499 1674 6.758254 TGATGACTGTGAACTTTACTCATGA 58.242 36.000 0.00 0.00 0.00 3.07
1500 1675 7.216494 TGATGACTGTGAACTTTACTCATGAA 58.784 34.615 0.00 0.00 0.00 2.57
1610 1785 2.225091 TGATTTGGCTGGTGATGGAACT 60.225 45.455 0.00 0.00 0.00 3.01
1665 1840 2.565834 GCTGAGGGTGTTAAGGTACAGA 59.434 50.000 0.00 0.00 0.00 3.41
1725 1903 4.213564 AGTGCTCTCATTAAGTTCTGGG 57.786 45.455 0.00 0.00 0.00 4.45
1734 1912 6.767902 TCTCATTAAGTTCTGGGCATAATGTC 59.232 38.462 0.00 0.00 36.09 3.06
1735 1913 6.662755 TCATTAAGTTCTGGGCATAATGTCT 58.337 36.000 0.00 0.00 36.09 3.41
1879 2070 5.279006 GGTGAGATATCGCTAATCTGTTCCA 60.279 44.000 8.00 0.00 33.82 3.53
2028 2223 9.845740 TTGGCTCACTATGTTACATATAAACAT 57.154 29.630 15.91 15.91 46.49 2.71
2054 2249 5.187687 TGGCTTATTTACCTTTAAGGACCG 58.812 41.667 18.97 0.18 37.67 4.79
2072 2268 5.421056 AGGACCGTAAATGAGACATGTTCTA 59.579 40.000 0.00 0.00 33.22 2.10
2077 2273 8.255206 ACCGTAAATGAGACATGTTCTATTACA 58.745 33.333 0.00 0.00 33.22 2.41
2089 2285 4.388773 TGTTCTATTACACAGCTGCTTTCG 59.611 41.667 15.27 0.00 0.00 3.46
2198 2419 4.699735 TGGTGTTCAATATGACATCACCAC 59.300 41.667 16.48 6.30 42.32 4.16
2205 2426 0.881118 ATGACATCACCACGTTTGCC 59.119 50.000 0.00 0.00 0.00 4.52
2208 2429 1.269448 GACATCACCACGTTTGCCAAT 59.731 47.619 0.00 0.00 0.00 3.16
2209 2430 1.000385 ACATCACCACGTTTGCCAATG 60.000 47.619 0.00 0.00 0.00 2.82
2210 2431 1.269174 CATCACCACGTTTGCCAATGA 59.731 47.619 0.00 0.00 0.00 2.57
2211 2432 1.393603 TCACCACGTTTGCCAATGAA 58.606 45.000 0.00 0.00 0.00 2.57
2212 2433 1.066303 TCACCACGTTTGCCAATGAAC 59.934 47.619 0.00 0.00 0.00 3.18
2214 2435 0.662970 CCACGTTTGCCAATGAACCG 60.663 55.000 0.00 0.00 0.00 4.44
2215 2436 1.007849 ACGTTTGCCAATGAACCGC 60.008 52.632 0.00 0.00 0.00 5.68
2321 2548 7.470192 TCCCTGGATTTCTTCTGAAAGTTATT 58.530 34.615 0.00 0.00 44.25 1.40
2400 2631 9.978044 AATTATGTAATAAGTACTTCCTCCGTC 57.022 33.333 12.39 0.00 42.97 4.79
2401 2632 5.841957 TGTAATAAGTACTTCCTCCGTCC 57.158 43.478 12.39 0.00 33.46 4.79
2402 2633 4.336433 TGTAATAAGTACTTCCTCCGTCCG 59.664 45.833 12.39 0.00 33.46 4.79
2403 2634 1.755179 TAAGTACTTCCTCCGTCCGG 58.245 55.000 12.39 0.00 0.00 5.14
2404 2635 0.038744 AAGTACTTCCTCCGTCCGGA 59.961 55.000 0.00 0.00 42.90 5.14
2405 2636 0.038744 AGTACTTCCTCCGTCCGGAA 59.961 55.000 5.23 0.00 44.66 4.30
2406 2637 0.890683 GTACTTCCTCCGTCCGGAAA 59.109 55.000 5.23 1.47 44.66 3.13
2407 2638 1.479730 GTACTTCCTCCGTCCGGAAAT 59.520 52.381 5.23 0.00 44.66 2.17
2408 2639 1.856629 ACTTCCTCCGTCCGGAAATA 58.143 50.000 5.23 0.00 44.66 1.40
2409 2640 1.479730 ACTTCCTCCGTCCGGAAATAC 59.520 52.381 5.23 0.00 44.66 1.89
2410 2641 1.755380 CTTCCTCCGTCCGGAAATACT 59.245 52.381 5.23 0.00 44.66 2.12
2411 2642 1.856629 TCCTCCGTCCGGAAATACTT 58.143 50.000 5.23 0.00 44.66 2.24
2412 2643 1.479323 TCCTCCGTCCGGAAATACTTG 59.521 52.381 5.23 0.00 44.66 3.16
2413 2644 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
2414 2645 2.537401 CTCCGTCCGGAAATACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
2415 2646 1.894466 TCCGTCCGGAAATACTTGTCA 59.106 47.619 5.23 0.00 42.05 3.58
2416 2647 2.498481 TCCGTCCGGAAATACTTGTCAT 59.502 45.455 5.23 0.00 42.05 3.06
2417 2648 3.055675 TCCGTCCGGAAATACTTGTCATT 60.056 43.478 5.23 0.00 42.05 2.57
2418 2649 3.063452 CCGTCCGGAAATACTTGTCATTG 59.937 47.826 5.23 0.00 37.50 2.82
2419 2650 3.930229 CGTCCGGAAATACTTGTCATTGA 59.070 43.478 5.23 0.00 0.00 2.57
2420 2651 4.390603 CGTCCGGAAATACTTGTCATTGAA 59.609 41.667 5.23 0.00 0.00 2.69
2421 2652 5.106869 CGTCCGGAAATACTTGTCATTGAAA 60.107 40.000 5.23 0.00 0.00 2.69
2422 2653 6.403200 CGTCCGGAAATACTTGTCATTGAAAT 60.403 38.462 5.23 0.00 0.00 2.17
2423 2654 6.747280 GTCCGGAAATACTTGTCATTGAAATG 59.253 38.462 5.23 0.00 37.75 2.32
2424 2655 6.035843 CCGGAAATACTTGTCATTGAAATGG 58.964 40.000 0.00 0.00 37.03 3.16
2425 2656 6.127758 CCGGAAATACTTGTCATTGAAATGGA 60.128 38.462 0.00 0.00 37.03 3.41
2426 2657 7.416664 CCGGAAATACTTGTCATTGAAATGGAT 60.417 37.037 0.00 0.00 37.03 3.41
2427 2658 7.433131 CGGAAATACTTGTCATTGAAATGGATG 59.567 37.037 3.31 0.00 37.03 3.51
2428 2659 8.253113 GGAAATACTTGTCATTGAAATGGATGT 58.747 33.333 3.31 2.77 37.03 3.06
2432 2663 9.857656 ATACTTGTCATTGAAATGGATGTATCT 57.142 29.630 3.31 0.00 37.03 1.98
2434 2665 9.334947 ACTTGTCATTGAAATGGATGTATCTAG 57.665 33.333 3.31 0.00 37.03 2.43
2438 2669 9.499479 GTCATTGAAATGGATGTATCTAGATGT 57.501 33.333 15.79 1.25 37.03 3.06
2470 2701 8.274322 AGTTGTAGATACATCCATTTTCATCCA 58.726 33.333 0.00 0.00 35.89 3.41
2471 2702 9.071276 GTTGTAGATACATCCATTTTCATCCAT 57.929 33.333 0.00 0.00 35.89 3.41
2472 2703 9.645128 TTGTAGATACATCCATTTTCATCCATT 57.355 29.630 0.00 0.00 35.89 3.16
2473 2704 9.645128 TGTAGATACATCCATTTTCATCCATTT 57.355 29.630 0.00 0.00 0.00 2.32
2476 2707 9.204337 AGATACATCCATTTTCATCCATTTTGA 57.796 29.630 0.00 0.00 0.00 2.69
2477 2708 9.991906 GATACATCCATTTTCATCCATTTTGAT 57.008 29.630 0.00 0.00 0.00 2.57
2478 2709 9.772973 ATACATCCATTTTCATCCATTTTGATG 57.227 29.630 0.00 0.00 42.84 3.07
2490 2721 8.469200 TCATCCATTTTGATGACAAGTATTTCC 58.531 33.333 0.00 0.00 44.65 3.13
2491 2722 6.851609 TCCATTTTGATGACAAGTATTTCCG 58.148 36.000 0.00 0.00 37.32 4.30
2492 2723 6.035843 CCATTTTGATGACAAGTATTTCCGG 58.964 40.000 0.00 0.00 37.32 5.14
2493 2724 6.127758 CCATTTTGATGACAAGTATTTCCGGA 60.128 38.462 0.00 0.00 37.32 5.14
2494 2725 5.873179 TTTGATGACAAGTATTTCCGGAC 57.127 39.130 1.83 0.00 37.32 4.79
2495 2726 3.517602 TGATGACAAGTATTTCCGGACG 58.482 45.455 1.83 0.00 0.00 4.79
2496 2727 2.373540 TGACAAGTATTTCCGGACGG 57.626 50.000 1.83 3.96 0.00 4.79
2497 2728 1.894466 TGACAAGTATTTCCGGACGGA 59.106 47.619 1.83 9.76 43.52 4.69
2498 2729 2.094390 TGACAAGTATTTCCGGACGGAG 60.094 50.000 13.64 3.15 46.06 4.63
2499 2730 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
2500 2731 0.828677 AAGTATTTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
2501 2732 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20
2502 2733 0.388294 GTATTTCCGGACGGAGGGAG 59.612 60.000 13.64 0.00 46.06 4.30
3079 4227 3.451178 GTGGTCAATAGGCTTAGAGGTGA 59.549 47.826 0.00 0.00 0.00 4.02
3417 4687 6.983906 AATCAAGAACCAAATTGAGGTCTT 57.016 33.333 8.33 8.33 38.76 3.01
3824 6490 4.681074 TGTGTCACTTGAAGTGTGGATA 57.319 40.909 23.17 2.44 46.03 2.59
3830 6496 6.483307 TGTCACTTGAAGTGTGGATAGAAAAG 59.517 38.462 23.17 0.00 46.03 2.27
4846 8134 8.650714 GCAAATTGTGTTGATATCTTTTTCTCC 58.349 33.333 3.98 0.00 0.00 3.71
5592 9225 9.953565 GTAGGCATAGGTAATTTATTGGTGATA 57.046 33.333 0.00 0.00 0.00 2.15
5638 9271 0.811281 GTCTTGTGGTAATGCTGGCC 59.189 55.000 0.00 0.00 0.00 5.36
5639 9272 0.676466 TCTTGTGGTAATGCTGGCCG 60.676 55.000 0.00 0.00 0.00 6.13
5640 9273 1.656818 CTTGTGGTAATGCTGGCCGG 61.657 60.000 7.41 7.41 0.00 6.13
5719 9354 2.391724 CTGTAGTGGGCCGGTTGTGT 62.392 60.000 1.90 0.00 0.00 3.72
5733 9368 3.303329 CGGTTGTGTTTGTCTGATCTGTG 60.303 47.826 0.00 0.00 0.00 3.66
5755 9390 0.318762 GTCTGGTTTGCGAGACCTCT 59.681 55.000 4.83 0.00 42.34 3.69
5772 9407 4.072131 ACCTCTTATGTGACGCATTTTGT 58.928 39.130 6.84 0.00 38.94 2.83
5773 9408 5.242434 ACCTCTTATGTGACGCATTTTGTA 58.758 37.500 6.84 0.00 38.94 2.41
5837 9472 0.898326 GCCCACCAACCCGATCTTTT 60.898 55.000 0.00 0.00 0.00 2.27
5849 9484 3.252458 CCCGATCTTTTGTTTCCTTTCGT 59.748 43.478 0.00 0.00 0.00 3.85
5875 9510 3.482110 CGACAAAAAGAGCTGAAAAACCG 59.518 43.478 0.00 0.00 0.00 4.44
5894 9529 0.750850 GGCAGCGAGTACCAGGAATA 59.249 55.000 0.00 0.00 0.00 1.75
5923 9558 1.293498 CCTCAGACTCCAACCACGG 59.707 63.158 0.00 0.00 0.00 4.94
5955 9590 2.903784 ACTACACTACAAGCCACCATCA 59.096 45.455 0.00 0.00 0.00 3.07
5957 9625 3.222173 ACACTACAAGCCACCATCAAA 57.778 42.857 0.00 0.00 0.00 2.69
5969 9637 2.483877 CACCATCAAAAGTAGCGCTGAA 59.516 45.455 22.90 0.00 0.00 3.02
5974 9642 5.287035 CCATCAAAAGTAGCGCTGAAATTTC 59.713 40.000 22.90 11.41 0.00 2.17
6112 9781 6.429385 TGAAACAGGAACAAAATTTGCAAACT 59.571 30.769 15.41 0.00 0.00 2.66
6125 9794 3.624326 TGCAAACTCCAAACAGATTCG 57.376 42.857 0.00 0.00 0.00 3.34
6131 9801 3.815809 ACTCCAAACAGATTCGAAACCA 58.184 40.909 0.00 0.00 0.00 3.67
6310 9984 8.635877 AAATGCGAACAAAATTTGTACTGTAA 57.364 26.923 12.11 0.00 44.59 2.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 0.669625 GGGCGCTAATACGATGGGAC 60.670 60.000 7.64 0.00 34.06 4.46
7 8 0.830444 AGGGCGCTAATACGATGGGA 60.830 55.000 7.64 0.00 34.06 4.37
8 9 0.034896 AAGGGCGCTAATACGATGGG 59.965 55.000 7.64 0.00 34.06 4.00
9 10 2.029290 AGTAAGGGCGCTAATACGATGG 60.029 50.000 7.64 0.00 34.06 3.51
10 11 3.299340 AGTAAGGGCGCTAATACGATG 57.701 47.619 7.64 0.00 34.06 3.84
11 12 5.458041 TTAAGTAAGGGCGCTAATACGAT 57.542 39.130 7.64 1.98 34.06 3.73
12 13 4.916983 TTAAGTAAGGGCGCTAATACGA 57.083 40.909 7.64 0.00 34.06 3.43
13 14 4.322804 CGATTAAGTAAGGGCGCTAATACG 59.677 45.833 7.64 4.47 0.00 3.06
14 15 5.464168 TCGATTAAGTAAGGGCGCTAATAC 58.536 41.667 7.64 3.99 0.00 1.89
15 16 5.242393 ACTCGATTAAGTAAGGGCGCTAATA 59.758 40.000 7.64 0.00 0.00 0.98
16 17 4.038883 ACTCGATTAAGTAAGGGCGCTAAT 59.961 41.667 7.64 0.85 0.00 1.73
17 18 3.382546 ACTCGATTAAGTAAGGGCGCTAA 59.617 43.478 7.64 0.00 0.00 3.09
18 19 2.954318 ACTCGATTAAGTAAGGGCGCTA 59.046 45.455 7.64 0.00 0.00 4.26
19 20 1.755380 ACTCGATTAAGTAAGGGCGCT 59.245 47.619 7.64 0.00 0.00 5.92
20 21 2.220479 ACTCGATTAAGTAAGGGCGC 57.780 50.000 0.00 0.00 0.00 6.53
21 22 3.930848 ACAAACTCGATTAAGTAAGGGCG 59.069 43.478 0.00 0.00 0.00 6.13
22 23 6.973229 TTACAAACTCGATTAAGTAAGGGC 57.027 37.500 0.00 0.00 0.00 5.19
23 24 9.603298 GTTTTTACAAACTCGATTAAGTAAGGG 57.397 33.333 0.00 0.00 39.49 3.95
42 43 9.368921 GCAAAGAATATGTGCAAAAGTTTTTAC 57.631 29.630 0.00 2.16 38.19 2.01
43 44 8.555361 GGCAAAGAATATGTGCAAAAGTTTTTA 58.445 29.630 0.00 0.00 40.12 1.52
44 45 7.416817 GGCAAAGAATATGTGCAAAAGTTTTT 58.583 30.769 0.00 0.00 40.12 1.94
45 46 6.017192 GGGCAAAGAATATGTGCAAAAGTTTT 60.017 34.615 0.00 0.00 40.12 2.43
46 47 5.469760 GGGCAAAGAATATGTGCAAAAGTTT 59.530 36.000 0.00 0.00 40.12 2.66
47 48 4.996758 GGGCAAAGAATATGTGCAAAAGTT 59.003 37.500 0.00 0.00 40.12 2.66
48 49 4.040217 TGGGCAAAGAATATGTGCAAAAGT 59.960 37.500 0.00 0.00 40.12 2.66
49 50 4.389687 GTGGGCAAAGAATATGTGCAAAAG 59.610 41.667 0.00 0.00 40.12 2.27
50 51 4.314121 GTGGGCAAAGAATATGTGCAAAA 58.686 39.130 0.00 0.00 40.12 2.44
51 52 3.306641 GGTGGGCAAAGAATATGTGCAAA 60.307 43.478 0.00 0.00 40.12 3.68
52 53 2.233431 GGTGGGCAAAGAATATGTGCAA 59.767 45.455 0.00 0.00 40.12 4.08
53 54 1.824230 GGTGGGCAAAGAATATGTGCA 59.176 47.619 0.00 0.00 40.12 4.57
97 98 2.287009 CGAACCTTCTTTTGGTGCACTC 60.287 50.000 17.98 7.60 37.93 3.51
98 99 1.676006 CGAACCTTCTTTTGGTGCACT 59.324 47.619 17.98 0.00 37.93 4.40
99 100 1.673920 TCGAACCTTCTTTTGGTGCAC 59.326 47.619 8.80 8.80 37.93 4.57
100 101 1.946768 CTCGAACCTTCTTTTGGTGCA 59.053 47.619 0.00 0.00 37.93 4.57
101 102 2.031944 GTCTCGAACCTTCTTTTGGTGC 60.032 50.000 0.00 0.00 37.93 5.01
102 103 2.221055 CGTCTCGAACCTTCTTTTGGTG 59.779 50.000 0.00 0.00 37.93 4.17
103 104 2.480845 CGTCTCGAACCTTCTTTTGGT 58.519 47.619 0.00 0.00 39.91 3.67
104 105 1.194772 GCGTCTCGAACCTTCTTTTGG 59.805 52.381 0.00 0.00 0.00 3.28
105 106 2.135933 AGCGTCTCGAACCTTCTTTTG 58.864 47.619 0.00 0.00 0.00 2.44
135 136 4.394712 GACAGGTGGGACCCGCTG 62.395 72.222 23.36 19.75 39.75 5.18
142 143 1.782201 AATGCTGCTGACAGGTGGGA 61.782 55.000 4.26 0.00 44.63 4.37
171 183 2.589798 AATAAACGAATCGGCGGAGA 57.410 45.000 7.21 0.00 35.12 3.71
192 204 5.828328 CCCTCTCTCGGGCTTAAATAAAAAT 59.172 40.000 0.00 0.00 37.41 1.82
194 206 4.472108 TCCCTCTCTCGGGCTTAAATAAAA 59.528 41.667 0.00 0.00 44.30 1.52
195 207 4.035112 TCCCTCTCTCGGGCTTAAATAAA 58.965 43.478 0.00 0.00 44.30 1.40
196 208 3.641906 CTCCCTCTCTCGGGCTTAAATAA 59.358 47.826 0.00 0.00 44.30 1.40
197 209 3.117246 TCTCCCTCTCTCGGGCTTAAATA 60.117 47.826 0.00 0.00 44.30 1.40
198 210 2.043227 CTCCCTCTCTCGGGCTTAAAT 58.957 52.381 0.00 0.00 44.30 1.40
199 211 1.006758 TCTCCCTCTCTCGGGCTTAAA 59.993 52.381 0.00 0.00 44.30 1.52
200 212 0.629596 TCTCCCTCTCTCGGGCTTAA 59.370 55.000 0.00 0.00 44.30 1.85
201 213 0.854218 ATCTCCCTCTCTCGGGCTTA 59.146 55.000 0.00 0.00 44.30 3.09
203 215 1.152830 GATCTCCCTCTCTCGGGCT 59.847 63.158 0.00 0.00 44.30 5.19
204 216 2.265182 CGATCTCCCTCTCTCGGGC 61.265 68.421 0.00 0.00 44.30 6.13
205 217 1.602323 CCGATCTCCCTCTCTCGGG 60.602 68.421 2.00 0.00 45.30 5.14
206 218 4.073052 CCGATCTCCCTCTCTCGG 57.927 66.667 0.00 0.00 43.98 4.63
207 219 2.265182 GGCCGATCTCCCTCTCTCG 61.265 68.421 0.00 0.00 0.00 4.04
208 220 2.265182 CGGCCGATCTCCCTCTCTC 61.265 68.421 24.07 0.00 0.00 3.20
209 221 2.203422 CGGCCGATCTCCCTCTCT 60.203 66.667 24.07 0.00 0.00 3.10
210 222 3.984749 GCGGCCGATCTCCCTCTC 61.985 72.222 33.48 2.06 0.00 3.20
242 291 2.992114 AAGAGGAGTGCGTCGGCT 60.992 61.111 0.00 0.00 40.82 5.52
265 344 2.100197 TCGATACCTGAGTTGAGTGGG 58.900 52.381 0.00 0.00 0.00 4.61
269 348 1.065701 CCCGTCGATACCTGAGTTGAG 59.934 57.143 0.00 0.00 0.00 3.02
270 349 1.100510 CCCGTCGATACCTGAGTTGA 58.899 55.000 0.00 0.00 0.00 3.18
271 350 0.815734 ACCCGTCGATACCTGAGTTG 59.184 55.000 0.00 0.00 0.00 3.16
272 351 1.101331 GACCCGTCGATACCTGAGTT 58.899 55.000 0.00 0.00 0.00 3.01
324 403 2.991190 GCAGGTTCGAAATTACTCGTCA 59.009 45.455 0.00 0.00 39.84 4.35
326 405 3.251571 GAGCAGGTTCGAAATTACTCGT 58.748 45.455 0.00 0.00 39.84 4.18
419 537 1.073722 CAAGAACAGGCAGGCAGGA 59.926 57.895 0.00 0.00 0.00 3.86
460 591 2.042464 CCTGCCCTGCTCTGATTAGTA 58.958 52.381 0.00 0.00 0.00 1.82
517 658 5.075067 CCCCAGGATATTCAGGGTAAAATCT 59.925 44.000 10.52 0.00 39.76 2.40
542 684 3.231501 GGATACGGCGATGCGAAC 58.768 61.111 16.62 0.00 0.00 3.95
566 708 4.265073 GGCGGCCTAATAATCAGAATCAT 58.735 43.478 12.87 0.00 0.00 2.45
568 710 2.673368 CGGCGGCCTAATAATCAGAATC 59.327 50.000 18.34 0.00 0.00 2.52
569 711 2.301870 TCGGCGGCCTAATAATCAGAAT 59.698 45.455 18.34 0.00 0.00 2.40
634 776 0.681733 AGTGATCCGACAGTGTTGCT 59.318 50.000 4.83 0.00 0.00 3.91
638 780 1.883732 CCGAGTGATCCGACAGTGT 59.116 57.895 0.00 0.00 0.00 3.55
665 807 5.556915 CCCTGATTTGACTGTACTTTACCA 58.443 41.667 0.00 0.00 0.00 3.25
670 812 2.644798 AGGCCCTGATTTGACTGTACTT 59.355 45.455 0.00 0.00 0.00 2.24
714 856 1.712018 CTGCTGGTCCGACATGCATG 61.712 60.000 25.09 25.09 33.02 4.06
715 857 1.450848 CTGCTGGTCCGACATGCAT 60.451 57.895 15.06 0.00 33.02 3.96
716 858 1.902765 ATCTGCTGGTCCGACATGCA 61.903 55.000 14.28 14.28 0.00 3.96
717 859 1.153289 ATCTGCTGGTCCGACATGC 60.153 57.895 0.00 4.60 0.00 4.06
743 895 4.242475 CTGGCATCGACTGTACTGTAAAA 58.758 43.478 5.27 0.00 0.00 1.52
744 896 3.845178 CTGGCATCGACTGTACTGTAAA 58.155 45.455 5.27 0.00 0.00 2.01
745 897 2.416836 GCTGGCATCGACTGTACTGTAA 60.417 50.000 5.27 0.00 0.00 2.41
809 966 2.159627 GGCTGTAACAATTCTGACACCG 59.840 50.000 0.00 0.00 0.00 4.94
830 987 2.156917 TCCAGAACAAGCAGAGCAATG 58.843 47.619 0.00 0.00 0.00 2.82
849 1010 3.598299 ACAAGAGAAGCTCTGATTGCTC 58.402 45.455 0.00 0.00 40.28 4.26
852 1013 5.075858 AGAGACAAGAGAAGCTCTGATTG 57.924 43.478 0.00 0.00 40.28 2.67
915 1077 3.308053 CGAGAACGGAGACAGTAATACGA 59.692 47.826 0.00 0.00 35.72 3.43
916 1078 3.063180 ACGAGAACGGAGACAGTAATACG 59.937 47.826 0.00 0.00 44.46 3.06
917 1079 4.142730 ACACGAGAACGGAGACAGTAATAC 60.143 45.833 0.00 0.00 44.46 1.89
919 1081 2.818432 ACACGAGAACGGAGACAGTAAT 59.182 45.455 0.00 0.00 44.46 1.89
927 1089 3.057019 TGAATTCAACACGAGAACGGAG 58.943 45.455 5.45 0.00 44.46 4.63
930 1092 3.120546 AGCATGAATTCAACACGAGAACG 60.121 43.478 13.09 0.00 45.75 3.95
970 1133 2.335369 GGTCTGTCGGCGCGATAT 59.665 61.111 12.10 0.00 38.42 1.63
979 1142 1.268899 ACTGTCCTTAACGGTCTGTCG 59.731 52.381 0.00 0.00 44.48 4.35
986 1149 2.981859 AGCCATACTGTCCTTAACGG 57.018 50.000 0.00 0.00 40.38 4.44
993 1156 0.249398 ACGGTGAAGCCATACTGTCC 59.751 55.000 0.00 0.00 36.97 4.02
1114 1277 2.612115 CCCTGGCCTGACCCTCTT 60.612 66.667 11.88 0.00 37.83 2.85
1121 1284 2.069776 CACTTTCTCCCTGGCCTGA 58.930 57.895 11.88 0.32 0.00 3.86
1141 1304 2.022129 CAGCGTTCACTCGGACACC 61.022 63.158 0.00 0.00 0.00 4.16
1144 1307 1.495584 TTTGCAGCGTTCACTCGGAC 61.496 55.000 0.00 0.00 0.00 4.79
1185 1348 1.068741 AGCTTCTTTATAGCCGACCCG 59.931 52.381 0.00 0.00 39.47 5.28
1197 1360 1.869767 CGACTCACTTGCAGCTTCTTT 59.130 47.619 0.00 0.00 0.00 2.52
1246 1409 1.750351 TCACGAACTGAAACGACGAG 58.250 50.000 0.00 0.00 0.00 4.18
1247 1410 2.048498 CATCACGAACTGAAACGACGA 58.952 47.619 0.00 0.00 30.60 4.20
1252 1415 2.808543 AGAAGGCATCACGAACTGAAAC 59.191 45.455 0.00 0.00 30.60 2.78
1261 1424 0.445436 GTCAGCAAGAAGGCATCACG 59.555 55.000 0.00 0.00 35.83 4.35
1394 1557 4.129380 CGCCATCATTGACAATTCTAGGA 58.871 43.478 0.00 0.00 0.00 2.94
1418 1581 1.654220 CACCTCTTTTGCCACCGTG 59.346 57.895 0.00 0.00 0.00 4.94
1436 1599 3.620821 GCTAAATCTCCTGACAGAACAGC 59.379 47.826 3.32 0.00 36.67 4.40
1459 1622 3.309954 GTCATCAGGGTAAGAAATGACGC 59.690 47.826 0.00 0.00 37.54 5.19
1461 1624 5.352569 CACAGTCATCAGGGTAAGAAATGAC 59.647 44.000 5.82 5.82 44.10 3.06
1477 1652 8.509690 CATTTCATGAGTAAAGTTCACAGTCAT 58.490 33.333 0.00 0.00 33.60 3.06
1478 1653 7.714813 TCATTTCATGAGTAAAGTTCACAGTCA 59.285 33.333 0.00 0.00 33.59 3.41
1492 1667 6.040166 GTCCATAAGCCAATCATTTCATGAGT 59.960 38.462 0.00 0.00 43.53 3.41
1495 1670 5.069383 TGGTCCATAAGCCAATCATTTCATG 59.931 40.000 0.00 0.00 0.00 3.07
1499 1674 3.962718 CCTGGTCCATAAGCCAATCATTT 59.037 43.478 0.00 0.00 33.93 2.32
1500 1675 3.052642 ACCTGGTCCATAAGCCAATCATT 60.053 43.478 0.00 0.00 33.93 2.57
1610 1785 1.340017 GCAAGGATGGCAGAAGTGGTA 60.340 52.381 0.00 0.00 32.79 3.25
1637 1812 4.019174 CCTTAACACCCTCAGCAATCATT 58.981 43.478 0.00 0.00 0.00 2.57
1665 1840 5.025453 AGCAAGACCCATGGTTTCATATTT 58.975 37.500 11.73 0.00 35.25 1.40
1716 1894 5.700402 ACTAGACATTATGCCCAGAACTT 57.300 39.130 0.00 0.00 0.00 2.66
2028 2223 6.831868 GGTCCTTAAAGGTAAATAAGCCATCA 59.168 38.462 0.00 0.00 36.53 3.07
2072 2268 5.872617 TGTATTACGAAAGCAGCTGTGTAAT 59.127 36.000 21.57 21.57 36.69 1.89
2077 2273 4.188247 TCTGTATTACGAAAGCAGCTGT 57.812 40.909 16.64 0.00 0.00 4.40
2146 2367 8.482943 TGCTGTGGACTTAATAATGTACAGTAT 58.517 33.333 9.96 9.96 37.28 2.12
2147 2368 7.842982 TGCTGTGGACTTAATAATGTACAGTA 58.157 34.615 5.37 5.37 37.28 2.74
2157 2378 5.321102 ACACCAATTGCTGTGGACTTAATA 58.679 37.500 16.18 0.00 39.62 0.98
2168 2389 5.712004 TGTCATATTGAACACCAATTGCTG 58.288 37.500 0.00 0.00 42.55 4.41
2198 2419 2.080062 CGCGGTTCATTGGCAAACG 61.080 57.895 3.01 5.69 0.00 3.60
2205 2426 4.178214 ATGCGGCGCGGTTCATTG 62.178 61.111 28.09 0.00 0.00 2.82
2214 2435 4.602696 GATGTGCTGATGCGGCGC 62.603 66.667 27.44 27.44 45.33 6.53
2215 2436 0.947660 ATAGATGTGCTGATGCGGCG 60.948 55.000 0.51 0.51 43.34 6.46
2249 2470 4.263462 ACAGAGCATGTGTATTTGGAGGAA 60.263 41.667 0.00 0.00 42.78 3.36
2253 2474 6.179756 ACATAACAGAGCATGTGTATTTGGA 58.820 36.000 0.00 0.00 44.43 3.53
2254 2475 6.441093 ACATAACAGAGCATGTGTATTTGG 57.559 37.500 0.00 0.00 44.43 3.28
2321 2548 4.728772 AGAGATGGTCAATCACAAACCAA 58.271 39.130 0.00 0.00 45.65 3.67
2387 2618 2.571548 TTCCGGACGGAGGAAGTAC 58.428 57.895 13.64 0.00 46.06 2.73
2391 2622 1.856629 AGTATTTCCGGACGGAGGAA 58.143 50.000 13.64 6.93 46.06 3.36
2392 2623 1.479323 CAAGTATTTCCGGACGGAGGA 59.521 52.381 13.64 7.39 46.06 3.71
2393 2624 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
2394 2625 2.094390 TGACAAGTATTTCCGGACGGAG 60.094 50.000 13.64 3.15 46.06 4.63
2395 2626 1.894466 TGACAAGTATTTCCGGACGGA 59.106 47.619 1.83 9.76 43.52 4.69
2396 2627 2.373540 TGACAAGTATTTCCGGACGG 57.626 50.000 1.83 3.96 0.00 4.79
2397 2628 3.930229 TCAATGACAAGTATTTCCGGACG 59.070 43.478 1.83 0.00 0.00 4.79
2398 2629 5.873179 TTCAATGACAAGTATTTCCGGAC 57.127 39.130 1.83 0.00 0.00 4.79
2399 2630 6.127758 CCATTTCAATGACAAGTATTTCCGGA 60.128 38.462 0.00 0.00 38.70 5.14
2400 2631 6.035843 CCATTTCAATGACAAGTATTTCCGG 58.964 40.000 0.00 0.00 38.70 5.14
2401 2632 6.851609 TCCATTTCAATGACAAGTATTTCCG 58.148 36.000 0.81 0.00 38.70 4.30
2402 2633 8.253113 ACATCCATTTCAATGACAAGTATTTCC 58.747 33.333 0.81 0.00 38.70 3.13
2406 2637 9.857656 AGATACATCCATTTCAATGACAAGTAT 57.142 29.630 0.81 4.50 38.70 2.12
2408 2639 9.334947 CTAGATACATCCATTTCAATGACAAGT 57.665 33.333 0.81 0.00 38.70 3.16
2409 2640 9.551734 TCTAGATACATCCATTTCAATGACAAG 57.448 33.333 0.81 0.00 38.70 3.16
2411 2642 9.498176 CATCTAGATACATCCATTTCAATGACA 57.502 33.333 4.54 0.00 38.70 3.58
2412 2643 9.499479 ACATCTAGATACATCCATTTCAATGAC 57.501 33.333 4.54 0.00 38.70 3.06
2451 2682 9.991906 ATCAAAATGGATGAAAATGGATGTATC 57.008 29.630 0.00 0.00 0.00 2.24
2452 2683 9.772973 CATCAAAATGGATGAAAATGGATGTAT 57.227 29.630 0.00 0.00 46.00 2.29
2465 2696 7.433131 CGGAAATACTTGTCATCAAAATGGATG 59.567 37.037 0.00 0.00 44.78 3.51
2466 2697 7.416664 CCGGAAATACTTGTCATCAAAATGGAT 60.417 37.037 0.00 0.00 33.42 3.41
2467 2698 6.127758 CCGGAAATACTTGTCATCAAAATGGA 60.128 38.462 0.00 0.00 33.42 3.41
2468 2699 6.035843 CCGGAAATACTTGTCATCAAAATGG 58.964 40.000 0.00 0.00 33.42 3.16
2470 2701 6.403200 CGTCCGGAAATACTTGTCATCAAAAT 60.403 38.462 5.23 0.00 32.87 1.82
2471 2702 5.106869 CGTCCGGAAATACTTGTCATCAAAA 60.107 40.000 5.23 0.00 32.87 2.44
2472 2703 4.390603 CGTCCGGAAATACTTGTCATCAAA 59.609 41.667 5.23 0.00 32.87 2.69
2473 2704 3.930229 CGTCCGGAAATACTTGTCATCAA 59.070 43.478 5.23 0.00 0.00 2.57
2474 2705 3.517602 CGTCCGGAAATACTTGTCATCA 58.482 45.455 5.23 0.00 0.00 3.07
2475 2706 2.864343 CCGTCCGGAAATACTTGTCATC 59.136 50.000 5.23 0.00 37.50 2.92
2476 2707 2.498481 TCCGTCCGGAAATACTTGTCAT 59.502 45.455 5.23 0.00 42.05 3.06
2477 2708 1.894466 TCCGTCCGGAAATACTTGTCA 59.106 47.619 5.23 0.00 42.05 3.58
2478 2709 2.537401 CTCCGTCCGGAAATACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
2479 2710 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
2480 2711 1.472728 CCCTCCGTCCGGAAATACTTG 60.473 57.143 5.23 0.00 44.66 3.16
2481 2712 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24
2482 2713 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
2483 2714 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
2484 2715 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
2485 2716 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
2486 2717 0.682209 CTACTCCCTCCGTCCGGAAA 60.682 60.000 5.23 0.00 44.66 3.13
2487 2718 1.077212 CTACTCCCTCCGTCCGGAA 60.077 63.158 5.23 0.00 44.66 4.30
2488 2719 1.856539 AACTACTCCCTCCGTCCGGA 61.857 60.000 0.00 0.00 42.90 5.14
2489 2720 0.107017 TAACTACTCCCTCCGTCCGG 60.107 60.000 0.00 0.00 0.00 5.14
2490 2721 1.978454 ATAACTACTCCCTCCGTCCG 58.022 55.000 0.00 0.00 0.00 4.79
2491 2722 4.161001 TGAAAATAACTACTCCCTCCGTCC 59.839 45.833 0.00 0.00 0.00 4.79
2492 2723 5.334724 TGAAAATAACTACTCCCTCCGTC 57.665 43.478 0.00 0.00 0.00 4.79
2493 2724 4.161754 CCTGAAAATAACTACTCCCTCCGT 59.838 45.833 0.00 0.00 0.00 4.69
2494 2725 4.404715 TCCTGAAAATAACTACTCCCTCCG 59.595 45.833 0.00 0.00 0.00 4.63
2495 2726 5.685337 GCTCCTGAAAATAACTACTCCCTCC 60.685 48.000 0.00 0.00 0.00 4.30
2496 2727 5.104900 TGCTCCTGAAAATAACTACTCCCTC 60.105 44.000 0.00 0.00 0.00 4.30
2497 2728 4.783227 TGCTCCTGAAAATAACTACTCCCT 59.217 41.667 0.00 0.00 0.00 4.20
2498 2729 4.876679 GTGCTCCTGAAAATAACTACTCCC 59.123 45.833 0.00 0.00 0.00 4.30
2499 2730 5.582665 CAGTGCTCCTGAAAATAACTACTCC 59.417 44.000 0.00 0.00 44.49 3.85
2500 2731 6.654793 CAGTGCTCCTGAAAATAACTACTC 57.345 41.667 0.00 0.00 44.49 2.59
2671 2973 4.047125 CACCCCCTGTCGCCCAAT 62.047 66.667 0.00 0.00 0.00 3.16
3824 6490 9.884636 AACAAAACATTACTTAAAGCCTTTTCT 57.115 25.926 0.00 0.00 0.00 2.52
3830 6496 9.476202 AGATTGAACAAAACATTACTTAAAGCC 57.524 29.630 0.00 0.00 0.00 4.35
5650 9283 4.342862 ACAATAGCGAGCATTACCATCT 57.657 40.909 0.00 0.00 0.00 2.90
5653 9286 3.202906 GGAACAATAGCGAGCATTACCA 58.797 45.455 0.00 0.00 0.00 3.25
5654 9287 3.202906 TGGAACAATAGCGAGCATTACC 58.797 45.455 0.00 0.00 31.92 2.85
5693 9328 0.034896 CGGCCCACTACAGTCAGTTT 59.965 55.000 0.00 0.00 0.00 2.66
5694 9329 1.671742 CGGCCCACTACAGTCAGTT 59.328 57.895 0.00 0.00 0.00 3.16
5719 9354 3.007290 CCAGACCTCACAGATCAGACAAA 59.993 47.826 0.00 0.00 0.00 2.83
5733 9368 2.828933 GTCTCGCAAACCAGACCTC 58.171 57.895 0.00 0.00 34.09 3.85
5755 9390 7.363431 TGTTTGATACAAAATGCGTCACATAA 58.637 30.769 0.00 0.00 33.51 1.90
5772 9407 1.629013 CGTCGAGCTGCTGTTTGATA 58.371 50.000 7.01 0.00 0.00 2.15
5773 9408 1.630244 GCGTCGAGCTGCTGTTTGAT 61.630 55.000 7.01 0.00 44.04 2.57
5837 9472 2.629210 CGCGCACGAAAGGAAACA 59.371 55.556 8.75 0.00 43.93 2.83
5849 9484 1.157257 TCAGCTCTTTTTGTCGCGCA 61.157 50.000 8.75 0.00 0.00 6.09
5875 9510 0.750850 TATTCCTGGTACTCGCTGCC 59.249 55.000 0.00 0.00 0.00 4.85
5894 9529 0.333312 AGTCTGAGGTCGTGGGATCT 59.667 55.000 0.00 0.00 35.94 2.75
5955 9590 4.742438 TCGAAATTTCAGCGCTACTTTT 57.258 36.364 10.99 8.08 0.00 2.27
5957 9625 4.742438 TTTCGAAATTTCAGCGCTACTT 57.258 36.364 10.99 0.00 0.00 2.24
6008 9676 1.069049 AGCGGCATTTTGAAACTGCTT 59.931 42.857 17.72 4.08 36.18 3.91
6112 9781 4.079980 TCTGGTTTCGAATCTGTTTGGA 57.920 40.909 0.00 0.00 0.00 3.53
6125 9794 9.838975 AACATTTTTGAAAATTGTTCTGGTTTC 57.161 25.926 19.38 0.00 36.52 2.78


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.