Multiple sequence alignment - TraesCS6B01G011800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G011800 chr6B 100.000 5917 0 0 1 5917 6848093 6854009 0.000000e+00 10927.0
1 TraesCS6B01G011800 chr6B 86.943 1930 187 32 3304 5207 7153083 7151193 0.000000e+00 2108.0
2 TraesCS6B01G011800 chr6B 87.125 1934 118 43 263 2114 7156582 7154698 0.000000e+00 2071.0
3 TraesCS6B01G011800 chr6B 89.029 1349 109 16 3795 5133 7100259 7098940 0.000000e+00 1635.0
4 TraesCS6B01G011800 chr6B 93.795 967 53 4 2321 3286 7154327 7153367 0.000000e+00 1447.0
5 TraesCS6B01G011800 chr6B 94.074 945 49 4 2343 3286 7102066 7101128 0.000000e+00 1428.0
6 TraesCS6B01G011800 chr6B 82.670 854 138 8 2394 3243 23640461 23641308 0.000000e+00 749.0
7 TraesCS6B01G011800 chr6B 96.335 382 14 0 2343 2724 7110241 7109860 3.890000e-176 628.0
8 TraesCS6B01G011800 chr6B 83.463 514 63 14 4932 5438 6878490 6878988 5.400000e-125 459.0
9 TraesCS6B01G011800 chr6B 85.856 403 47 8 3795 4191 7109067 7108669 2.550000e-113 420.0
10 TraesCS6B01G011800 chr6B 79.966 584 95 17 3795 4363 23641950 23642526 1.530000e-110 411.0
11 TraesCS6B01G011800 chr6B 90.333 300 16 3 4619 4918 6877966 6878252 1.200000e-101 381.0
12 TraesCS6B01G011800 chr6B 94.241 191 8 2 2138 2325 7154628 7154438 7.500000e-74 289.0
13 TraesCS6B01G011800 chr6B 89.091 110 3 1 1 101 7156775 7156666 1.730000e-25 128.0
14 TraesCS6B01G011800 chr6A 94.407 1466 63 7 2370 3824 2399856 2401313 0.000000e+00 2235.0
15 TraesCS6B01G011800 chr6A 83.648 2116 160 77 3 2021 2397425 2399451 0.000000e+00 1820.0
16 TraesCS6B01G011800 chr6A 88.324 1122 82 28 3825 4918 2401429 2402529 0.000000e+00 1301.0
17 TraesCS6B01G011800 chr6A 82.491 851 137 8 2394 3243 14375917 14375078 0.000000e+00 736.0
18 TraesCS6B01G011800 chr6A 78.684 1018 179 23 3364 4363 14375003 14374006 1.390000e-180 643.0
19 TraesCS6B01G011800 chr6A 79.967 614 89 27 1296 1888 14376788 14376188 7.090000e-114 422.0
20 TraesCS6B01G011800 chr6A 82.394 142 25 0 4692 4833 14373655 14373514 2.240000e-24 124.0
21 TraesCS6B01G011800 chr6A 100.000 30 0 0 1518 1547 247559927 247559956 8.280000e-04 56.5
22 TraesCS6B01G011800 chr6D 85.977 1954 122 63 1 1853 3586537 3588439 0.000000e+00 1951.0
23 TraesCS6B01G011800 chr6D 90.655 931 72 8 2363 3286 3588910 3589832 0.000000e+00 1223.0
24 TraesCS6B01G011800 chr6D 81.384 1214 164 41 3295 4488 3590012 3591183 0.000000e+00 933.0
25 TraesCS6B01G011800 chr6D 82.477 856 134 11 2394 3243 13100211 13099366 0.000000e+00 736.0
26 TraesCS6B01G011800 chr6D 80.000 610 110 11 3762 4363 13098511 13097906 1.960000e-119 440.0
27 TraesCS6B01G011800 chr6D 80.098 613 88 28 1296 1888 13101085 13100487 5.480000e-115 425.0
28 TraesCS6B01G011800 chr6D 84.141 454 47 13 4487 4918 3591245 3591695 3.300000e-112 416.0
29 TraesCS6B01G011800 chr6D 88.820 322 23 3 4919 5240 3591731 3592039 3.350000e-102 383.0
30 TraesCS6B01G011800 chr6D 80.645 217 42 0 1000 1216 13101411 13101195 1.020000e-37 169.0
31 TraesCS6B01G011800 chr6D 77.231 325 38 19 5496 5813 3592260 3592555 2.210000e-34 158.0
32 TraesCS6B01G011800 chr6D 82.394 142 25 0 4692 4833 13097555 13097414 2.240000e-24 124.0
33 TraesCS6B01G011800 chr6D 85.333 75 11 0 2195 2269 3588723 3588797 1.770000e-10 78.7
34 TraesCS6B01G011800 chrUn 92.582 701 26 5 4436 5133 339230230 339230907 0.000000e+00 983.0
35 TraesCS6B01G011800 chr4A 74.497 596 131 15 2394 2983 717741166 717740586 7.660000e-59 239.0
36 TraesCS6B01G011800 chr4A 88.889 144 16 0 1497 1640 717741645 717741502 1.690000e-40 178.0
37 TraesCS6B01G011800 chr7A 74.749 499 109 15 2744 3236 16300845 16300358 2.160000e-49 207.0
38 TraesCS6B01G011800 chr7D 74.148 499 112 15 2744 3236 16924827 16924340 2.180000e-44 191.0
39 TraesCS6B01G011800 chr7D 88.889 144 16 0 1497 1640 16925632 16925489 1.690000e-40 178.0
40 TraesCS6B01G011800 chr7D 98.462 65 1 0 5853 5917 351845623 351845687 1.350000e-21 115.0
41 TraesCS6B01G011800 chr7B 98.462 65 1 0 5853 5917 674515478 674515414 1.350000e-21 115.0
42 TraesCS6B01G011800 chr7B 97.674 43 1 0 5812 5854 674515536 674515494 2.290000e-09 75.0
43 TraesCS6B01G011800 chr5B 96.923 65 1 1 5853 5917 549253867 549253804 2.250000e-19 108.0
44 TraesCS6B01G011800 chr5A 100.000 30 0 0 1518 1547 161403640 161403611 8.280000e-04 56.5
45 TraesCS6B01G011800 chr5A 100.000 30 0 0 1518 1547 179211881 179211852 8.280000e-04 56.5
46 TraesCS6B01G011800 chr1A 100.000 30 0 0 1518 1547 502074342 502074313 8.280000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G011800 chr6B 6848093 6854009 5916 False 10927.000000 10927 100.000000 1 5917 1 chr6B.!!$F1 5916
1 TraesCS6B01G011800 chr6B 7098940 7102066 3126 True 1531.500000 1635 91.551500 2343 5133 2 chr6B.!!$R1 2790
2 TraesCS6B01G011800 chr6B 7151193 7156775 5582 True 1208.600000 2108 90.239000 1 5207 5 chr6B.!!$R3 5206
3 TraesCS6B01G011800 chr6B 23640461 23642526 2065 False 580.000000 749 81.318000 2394 4363 2 chr6B.!!$F3 1969
4 TraesCS6B01G011800 chr6B 7108669 7110241 1572 True 524.000000 628 91.095500 2343 4191 2 chr6B.!!$R2 1848
5 TraesCS6B01G011800 chr6B 6877966 6878988 1022 False 420.000000 459 86.898000 4619 5438 2 chr6B.!!$F2 819
6 TraesCS6B01G011800 chr6A 2397425 2402529 5104 False 1785.333333 2235 88.793000 3 4918 3 chr6A.!!$F2 4915
7 TraesCS6B01G011800 chr6A 14373514 14376788 3274 True 481.250000 736 80.884000 1296 4833 4 chr6A.!!$R1 3537
8 TraesCS6B01G011800 chr6D 3586537 3592555 6018 False 734.671429 1951 84.791571 1 5813 7 chr6D.!!$F1 5812
9 TraesCS6B01G011800 chr6D 13097414 13101411 3997 True 378.800000 736 81.122800 1000 4833 5 chr6D.!!$R1 3833
10 TraesCS6B01G011800 chrUn 339230230 339230907 677 False 983.000000 983 92.582000 4436 5133 1 chrUn.!!$F1 697
11 TraesCS6B01G011800 chr4A 717740586 717741645 1059 True 208.500000 239 81.693000 1497 2983 2 chr4A.!!$R1 1486

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
863 986 0.664761 TTGCTCTGCTTGTTCTGCAC 59.335 50.000 0.00 0.00 36.37 4.57 F
1641 1837 0.107993 GCCGAGGGTGTTAAGGTACC 60.108 60.000 2.73 2.73 36.21 3.34 F
1861 2070 1.355971 TCGCTAATCTGTTGTTCCGC 58.644 50.000 0.00 0.00 0.00 5.54 F
3589 4408 1.202200 CCTCGTAGTGCACTAGTCTGC 60.202 57.143 26.70 13.44 37.70 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2149 2388 0.107268 ATAGATGTGCTGATGCGGCA 59.893 50.000 4.58 4.58 44.04 5.69 R
3478 4273 1.078426 AGCAACACCACCGGATAGC 60.078 57.895 9.46 1.74 0.00 2.97 R
3714 4533 3.149196 TCAGATTTGCACCAGGAAAGAC 58.851 45.455 0.00 0.00 38.50 3.01 R
5442 7312 0.178068 TCAAGCGACTCTATTGGGCC 59.822 55.000 0.00 0.00 0.00 5.80 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
148 185 4.081917 CGCTTCCTTTATTTTTAAGCCCCA 60.082 41.667 0.00 0.00 39.46 4.96
152 189 7.619512 TTCCTTTATTTTTAAGCCCCAAGAA 57.380 32.000 0.00 0.00 0.00 2.52
153 190 7.239763 TCCTTTATTTTTAAGCCCCAAGAAG 57.760 36.000 0.00 0.00 0.00 2.85
154 191 7.013834 TCCTTTATTTTTAAGCCCCAAGAAGA 58.986 34.615 0.00 0.00 0.00 2.87
155 192 7.511028 TCCTTTATTTTTAAGCCCCAAGAAGAA 59.489 33.333 0.00 0.00 0.00 2.52
156 193 7.819415 CCTTTATTTTTAAGCCCCAAGAAGAAG 59.181 37.037 0.00 0.00 0.00 2.85
157 194 8.485578 TTTATTTTTAAGCCCCAAGAAGAAGA 57.514 30.769 0.00 0.00 0.00 2.87
158 195 6.994421 ATTTTTAAGCCCCAAGAAGAAGAA 57.006 33.333 0.00 0.00 0.00 2.52
159 196 6.405278 TTTTTAAGCCCCAAGAAGAAGAAG 57.595 37.500 0.00 0.00 0.00 2.85
160 197 4.993705 TTAAGCCCCAAGAAGAAGAAGA 57.006 40.909 0.00 0.00 0.00 2.87
161 198 3.431673 AAGCCCCAAGAAGAAGAAGAG 57.568 47.619 0.00 0.00 0.00 2.85
162 199 2.343625 AGCCCCAAGAAGAAGAAGAGT 58.656 47.619 0.00 0.00 0.00 3.24
163 200 2.304470 AGCCCCAAGAAGAAGAAGAGTC 59.696 50.000 0.00 0.00 0.00 3.36
176 213 4.229304 AGAAGAGTCAGAGAGATCGGAA 57.771 45.455 0.00 0.00 0.00 4.30
177 214 4.594970 AGAAGAGTCAGAGAGATCGGAAA 58.405 43.478 0.00 0.00 0.00 3.13
178 215 5.013547 AGAAGAGTCAGAGAGATCGGAAAA 58.986 41.667 0.00 0.00 0.00 2.29
180 217 4.594970 AGAGTCAGAGAGATCGGAAAAGA 58.405 43.478 0.00 0.00 0.00 2.52
211 261 1.986210 ACCGCTAAACCCTAGCCGT 60.986 57.895 0.00 0.00 37.26 5.68
361 418 2.280628 GCCCTCTGTGAGTAATTTCGG 58.719 52.381 0.00 0.00 0.00 4.30
432 493 0.892755 CCTGTTGCGGAGTGGTAGTA 59.107 55.000 0.00 0.00 0.00 1.82
449 510 8.958506 AGTGGTAGTACTAGTATTCAGTTCTTG 58.041 37.037 5.75 0.00 0.00 3.02
461 522 2.844348 TCAGTTCTTGTTAGGGATCCCC 59.156 50.000 28.11 12.96 45.90 4.81
501 562 1.239347 GCCTCTTCTTGTTGGGTGTC 58.761 55.000 0.00 0.00 0.00 3.67
530 601 3.801698 TCCAATCACTAATCAGAGCAGC 58.198 45.455 0.00 0.00 0.00 5.25
602 682 4.840288 TCGCCGTATCCGTGCGTG 62.840 66.667 11.77 0.00 46.52 5.34
657 737 3.991121 GCTCGATCAGGGCTTAATTAGTC 59.009 47.826 2.68 0.00 44.82 2.59
663 743 5.344743 TCAGGGCTTAATTAGTCAGACAG 57.655 43.478 2.66 0.00 0.00 3.51
725 805 3.703001 ACAGTACAGTCAAATCAGGGG 57.297 47.619 0.00 0.00 0.00 4.79
743 823 1.732308 GCTTAATCAGCTGCAGGCC 59.268 57.895 17.12 0.00 46.27 5.19
777 871 3.190849 CAGCAGATCACACCGCCG 61.191 66.667 0.00 0.00 0.00 6.46
835 934 4.172512 CCAGGCATCTGCTCGGCT 62.173 66.667 1.70 0.00 39.61 5.52
838 937 2.437359 GGCATCTGCTCGGCTTGT 60.437 61.111 1.70 0.00 41.70 3.16
839 938 2.467826 GGCATCTGCTCGGCTTGTC 61.468 63.158 1.70 0.00 41.70 3.18
863 986 0.664761 TTGCTCTGCTTGTTCTGCAC 59.335 50.000 0.00 0.00 36.37 4.57
882 1005 2.096516 CACAAAACAGAGCTTCTCTCGC 60.097 50.000 0.00 0.00 46.44 5.03
922 1046 6.260377 CAGTTTGACTTATGCACCATGTATG 58.740 40.000 0.00 0.00 0.00 2.39
923 1047 5.945784 AGTTTGACTTATGCACCATGTATGT 59.054 36.000 0.00 0.00 0.00 2.29
924 1048 7.065683 CAGTTTGACTTATGCACCATGTATGTA 59.934 37.037 0.00 0.00 0.00 2.29
926 1050 8.405531 GTTTGACTTATGCACCATGTATGTATT 58.594 33.333 0.00 0.00 0.00 1.89
927 1051 7.728847 TGACTTATGCACCATGTATGTATTC 57.271 36.000 0.00 0.00 0.00 1.75
931 1055 8.213679 ACTTATGCACCATGTATGTATTCTCTT 58.786 33.333 0.00 0.00 0.00 2.85
932 1056 6.872628 ATGCACCATGTATGTATTCTCTTG 57.127 37.500 0.00 0.00 0.00 3.02
934 1058 6.179756 TGCACCATGTATGTATTCTCTTGTT 58.820 36.000 0.00 0.00 0.00 2.83
935 1059 6.093909 TGCACCATGTATGTATTCTCTTGTTG 59.906 38.462 0.00 0.00 0.00 3.33
939 1072 7.550551 ACCATGTATGTATTCTCTTGTTGTCTG 59.449 37.037 0.00 0.00 0.00 3.51
940 1073 6.968131 TGTATGTATTCTCTTGTTGTCTGC 57.032 37.500 0.00 0.00 0.00 4.26
983 1119 4.836125 ACTGTTTGAATTTCGTGCAGAT 57.164 36.364 15.79 3.74 0.00 2.90
1097 1234 3.391382 CTCCCTCGTTTCGCCCCT 61.391 66.667 0.00 0.00 0.00 4.79
1240 1402 1.821241 CGCCGTGCCATCGTTCATAG 61.821 60.000 0.00 0.00 0.00 2.23
1266 1428 1.939934 TGCGTCCTTTCAGTTTGTGAG 59.060 47.619 0.00 0.00 36.21 3.51
1273 1435 3.253432 CCTTTCAGTTTGTGAGGCTTACC 59.747 47.826 6.99 0.00 36.21 2.85
1287 1455 4.884458 GGCTTACCTGCTTACTTCATTC 57.116 45.455 0.00 0.00 0.00 2.67
1425 1602 0.881796 GGTGGCAAAAGAGGTACTGC 59.118 55.000 0.00 0.00 41.55 4.40
1476 1668 2.932261 ACCCTGTGGACTGAACTTTTC 58.068 47.619 0.00 0.00 34.81 2.29
1478 1670 3.053619 ACCCTGTGGACTGAACTTTTCTT 60.054 43.478 0.00 0.00 34.81 2.52
1641 1837 0.107993 GCCGAGGGTGTTAAGGTACC 60.108 60.000 2.73 2.73 36.21 3.34
1702 1901 4.613925 AAGTGCTCTCATTCAGTTCTGA 57.386 40.909 0.00 0.00 0.00 3.27
1803 2012 4.108699 TGAGAAAACAACCAAAGCACTG 57.891 40.909 0.00 0.00 0.00 3.66
1861 2070 1.355971 TCGCTAATCTGTTGTTCCGC 58.644 50.000 0.00 0.00 0.00 5.54
2070 2284 2.217750 TCTTTTACGCAGCTGCTTTCA 58.782 42.857 34.22 14.26 39.32 2.69
2075 2289 4.963276 TTACGCAGCTGCTTTCATAATT 57.037 36.364 34.22 10.68 39.32 1.40
2076 2290 3.855689 ACGCAGCTGCTTTCATAATTT 57.144 38.095 34.22 4.53 39.32 1.82
2149 2388 4.104579 TGGACATATACTGCCAATGACCAT 59.895 41.667 2.38 0.00 39.43 3.55
2253 2547 5.066505 CCCCGGATTTCTTCTGAAAGTTATG 59.933 44.000 0.73 0.00 44.25 1.90
2359 2843 6.782986 TCACTAATCCCCATTTGGATCTATG 58.217 40.000 0.00 0.00 44.49 2.23
2559 3043 2.789409 ACCTCTATGTGGTTGAAGGC 57.211 50.000 0.00 0.00 33.34 4.35
2688 3183 6.582672 GCCAACTTGTCTACTTAAATTTCAGC 59.417 38.462 0.00 0.00 0.00 4.26
2711 3206 4.686191 ATCAACATCTCCATGAGTCCTC 57.314 45.455 0.00 0.00 33.72 3.71
2996 3494 6.180472 TGACAGGAGGTAAATTTGATCTTCC 58.820 40.000 0.00 6.88 0.00 3.46
2997 3495 6.139679 ACAGGAGGTAAATTTGATCTTCCA 57.860 37.500 16.70 0.00 0.00 3.53
3003 3503 6.870769 AGGTAAATTTGATCTTCCATGCAAG 58.129 36.000 0.00 0.00 0.00 4.01
3004 3504 6.438425 AGGTAAATTTGATCTTCCATGCAAGT 59.562 34.615 0.00 0.00 0.00 3.16
3005 3505 6.532657 GGTAAATTTGATCTTCCATGCAAGTG 59.467 38.462 0.00 0.00 0.00 3.16
3006 3506 3.581024 TTTGATCTTCCATGCAAGTGC 57.419 42.857 0.00 0.00 42.50 4.40
3007 3507 2.502142 TGATCTTCCATGCAAGTGCT 57.498 45.000 4.69 0.00 42.66 4.40
3021 3529 4.141642 TGCAAGTGCTATATGATGTGTCCT 60.142 41.667 4.69 0.00 42.66 3.85
3158 3666 7.201794 GCCAAGGTTGTAATTACTAAGGATTCC 60.202 40.741 16.33 5.76 0.00 3.01
3330 4112 3.940209 TTTGCTGCCTATTTTCCTGTG 57.060 42.857 0.00 0.00 0.00 3.66
3411 4203 7.145323 CCTTAACTAATGTTTTGTCCAACCTG 58.855 38.462 0.00 0.00 37.59 4.00
3451 4246 6.376581 AGGCTTCTGAACAGGAATATGAAAAG 59.623 38.462 1.93 0.00 0.00 2.27
3512 4307 4.275936 GTGTTGCTGTCATTCAGGTACTTT 59.724 41.667 0.00 0.00 43.78 2.66
3572 4367 2.064014 GCAATTGCAGAAAAGCACCTC 58.936 47.619 25.36 0.00 45.61 3.85
3586 4405 2.546195 CACCTCGTAGTGCACTAGTC 57.454 55.000 26.70 14.88 0.00 2.59
3587 4406 2.085320 CACCTCGTAGTGCACTAGTCT 58.915 52.381 26.70 3.54 0.00 3.24
3588 4407 2.085320 ACCTCGTAGTGCACTAGTCTG 58.915 52.381 26.70 17.13 0.00 3.51
3589 4408 1.202200 CCTCGTAGTGCACTAGTCTGC 60.202 57.143 26.70 13.44 37.70 4.26
3590 4409 1.468914 CTCGTAGTGCACTAGTCTGCA 59.531 52.381 26.70 2.57 45.06 4.41
3665 4484 4.273480 GCACAGACTGAAACTGAGCTAAAA 59.727 41.667 10.08 0.00 44.22 1.52
3714 4533 4.925054 CACTGAATGCAACAAAGGTAATGG 59.075 41.667 0.00 0.00 0.00 3.16
3716 4535 5.132897 TGAATGCAACAAAGGTAATGGTC 57.867 39.130 0.00 0.00 0.00 4.02
3718 4537 5.304101 TGAATGCAACAAAGGTAATGGTCTT 59.696 36.000 0.00 0.00 0.00 3.01
3765 4971 6.828502 TTTGCGACTTGTGTATATCTCATC 57.171 37.500 0.00 0.00 0.00 2.92
3790 5039 0.035458 AGCCTTCTGGTGCAGTGTAC 59.965 55.000 2.25 2.25 35.27 2.90
3911 5329 0.831966 TTGTCGGTGGTGGTTGTACT 59.168 50.000 0.00 0.00 0.00 2.73
3929 5347 5.560724 TGTACTCTTTTAAGGCTTGCATCT 58.439 37.500 10.69 0.00 0.00 2.90
4027 5447 5.409520 TCTTGAAGTCTCGTCATTTGAATGG 59.590 40.000 4.05 0.00 37.03 3.16
4029 5449 5.063204 TGAAGTCTCGTCATTTGAATGGTT 58.937 37.500 4.05 0.00 37.03 3.67
4147 5572 5.551760 ATCCACTTAAACTGATTGCGAAG 57.448 39.130 0.00 0.00 0.00 3.79
4175 5600 0.878416 TGTTAATGGCAGCGTGGTTC 59.122 50.000 0.00 0.00 0.00 3.62
4178 5603 2.130821 TAATGGCAGCGTGGTTCCCA 62.131 55.000 0.00 0.00 0.00 4.37
4248 5674 4.993550 GCAACTTGTGCGTTTCTAATTTG 58.006 39.130 0.00 0.00 45.10 2.32
4364 5791 7.147033 TGGTATTATTGATCCCACCAAGGTAAT 60.147 37.037 0.00 0.00 33.28 1.89
4365 5792 7.393515 GGTATTATTGATCCCACCAAGGTAATC 59.606 40.741 0.00 0.00 34.66 1.75
4370 5797 1.004277 TCCCACCAAGGTAATCAGCAC 59.996 52.381 0.00 0.00 34.66 4.40
4400 5827 6.811170 TGTTGACATCTTTTTGTTTTGTCTCC 59.189 34.615 0.00 0.00 38.00 3.71
4406 5833 6.202516 TCTTTTTGTTTTGTCTCCGAACAT 57.797 33.333 0.00 0.00 33.73 2.71
4475 5904 9.228636 TCAAGTAAGCGAAAAGTATTTCAAAAC 57.771 29.630 0.00 0.00 44.24 2.43
4476 5905 8.476925 CAAGTAAGCGAAAAGTATTTCAAAACC 58.523 33.333 0.00 0.00 44.24 3.27
4565 6061 8.917088 AGCCTTAATGTGCAATTATACTGAAAT 58.083 29.630 0.00 0.00 0.00 2.17
4586 6082 9.758021 TGAAATATTAAGCATGATCACCCATAT 57.242 29.630 0.00 0.00 0.00 1.78
4829 6364 1.078426 GCCGGTTCAGGTATGCAGT 60.078 57.895 1.90 0.00 0.00 4.40
5025 6792 6.920758 ACTAAATTTTTGTTGCTATTGTCGCA 59.079 30.769 0.00 0.00 35.22 5.10
5036 6803 4.048504 GCTATTGTCGCAAACCAAAAGTT 58.951 39.130 0.00 0.00 41.81 2.66
5048 6815 2.389713 CAAAAGTTGGAGCGTGAGTG 57.610 50.000 0.00 0.00 0.00 3.51
5097 6864 7.387397 AGCAATCTAGTCTTGAAAGAAAGTGAG 59.613 37.037 10.65 0.00 36.68 3.51
5103 6870 5.755861 AGTCTTGAAAGAAAGTGAGCACTAC 59.244 40.000 3.21 2.11 41.58 2.73
5217 7009 0.675633 AATGCTGGCTGTTGTTCCAC 59.324 50.000 0.00 0.00 0.00 4.02
5259 7116 1.153066 TGCTCTTGTTTGGTCGCCA 60.153 52.632 0.00 0.00 0.00 5.69
5264 7121 1.336440 TCTTGTTTGGTCGCCAACATG 59.664 47.619 10.30 12.43 43.82 3.21
5271 7128 1.202710 TGGTCGCCAACATGTAACACT 60.203 47.619 0.00 0.00 0.00 3.55
5274 7131 0.590682 CGCCAACATGTAACACTGCA 59.409 50.000 0.00 0.00 0.00 4.41
5278 7135 3.490761 GCCAACATGTAACACTGCAACTT 60.491 43.478 0.00 0.00 0.00 2.66
5280 7137 3.878086 ACATGTAACACTGCAACTTCG 57.122 42.857 0.00 0.00 0.00 3.79
5314 7176 0.390866 CTTGTCTGATGTGCGAGGCT 60.391 55.000 0.00 0.00 0.00 4.58
5320 7186 0.890542 TGATGTGCGAGGCTTGCTTT 60.891 50.000 26.25 11.71 0.00 3.51
5321 7187 0.455633 GATGTGCGAGGCTTGCTTTG 60.456 55.000 26.25 0.00 0.00 2.77
5322 7188 2.429739 GTGCGAGGCTTGCTTTGC 60.430 61.111 26.25 9.61 0.00 3.68
5324 7190 2.126580 GCGAGGCTTGCTTTGCTG 60.127 61.111 19.65 0.00 0.00 4.41
5325 7191 2.126580 CGAGGCTTGCTTTGCTGC 60.127 61.111 0.00 0.00 0.00 5.25
5326 7192 2.126580 GAGGCTTGCTTTGCTGCG 60.127 61.111 0.00 0.00 35.36 5.18
5327 7193 2.908940 AGGCTTGCTTTGCTGCGT 60.909 55.556 0.00 0.00 35.36 5.24
5328 7194 2.429739 GGCTTGCTTTGCTGCGTC 60.430 61.111 0.00 0.00 35.36 5.19
5329 7195 2.798262 GCTTGCTTTGCTGCGTCG 60.798 61.111 0.00 0.00 35.36 5.12
5330 7196 2.127118 CTTGCTTTGCTGCGTCGG 60.127 61.111 0.00 0.00 35.36 4.79
5331 7197 3.599792 CTTGCTTTGCTGCGTCGGG 62.600 63.158 0.00 0.00 35.36 5.14
5332 7198 4.927782 TGCTTTGCTGCGTCGGGT 62.928 61.111 0.00 0.00 35.36 5.28
5349 7215 1.374758 GTGGTGGTTCTCTCAGCCG 60.375 63.158 0.00 0.00 32.25 5.52
5359 7225 3.355626 TCTCTCAGCCGATCAAATACG 57.644 47.619 0.00 0.00 0.00 3.06
5362 7228 4.760204 TCTCTCAGCCGATCAAATACGATA 59.240 41.667 0.00 0.00 0.00 2.92
5368 7234 2.028476 CCGATCAAATACGATAGGCCCA 60.028 50.000 0.00 0.00 43.77 5.36
5369 7235 3.254060 CGATCAAATACGATAGGCCCAG 58.746 50.000 0.00 0.00 43.77 4.45
5370 7236 3.306088 CGATCAAATACGATAGGCCCAGT 60.306 47.826 0.00 0.00 43.77 4.00
5371 7237 4.642429 GATCAAATACGATAGGCCCAGTT 58.358 43.478 0.00 0.00 43.77 3.16
5373 7243 3.709653 TCAAATACGATAGGCCCAGTTCT 59.290 43.478 0.00 0.00 43.77 3.01
5438 7308 5.897377 TCATGTCAACTTCGAGATCACTA 57.103 39.130 0.00 0.00 0.00 2.74
5439 7309 5.884771 TCATGTCAACTTCGAGATCACTAG 58.115 41.667 0.00 0.00 0.00 2.57
5440 7310 5.648092 TCATGTCAACTTCGAGATCACTAGA 59.352 40.000 0.00 0.00 0.00 2.43
5441 7311 5.959618 TGTCAACTTCGAGATCACTAGAA 57.040 39.130 0.00 0.00 36.59 2.10
5445 7315 3.363341 CTTCGAGATCACTAGAAGGCC 57.637 52.381 0.00 0.00 45.45 5.19
5446 7316 1.693627 TCGAGATCACTAGAAGGCCC 58.306 55.000 0.00 0.00 0.00 5.80
5447 7317 1.063942 TCGAGATCACTAGAAGGCCCA 60.064 52.381 0.00 0.00 0.00 5.36
5448 7318 1.757118 CGAGATCACTAGAAGGCCCAA 59.243 52.381 0.00 0.00 0.00 4.12
5449 7319 2.366916 CGAGATCACTAGAAGGCCCAAT 59.633 50.000 0.00 0.00 0.00 3.16
5450 7320 3.574396 CGAGATCACTAGAAGGCCCAATA 59.426 47.826 0.00 0.00 0.00 1.90
5451 7321 4.321601 CGAGATCACTAGAAGGCCCAATAG 60.322 50.000 0.00 1.11 0.00 1.73
5452 7322 4.820775 AGATCACTAGAAGGCCCAATAGA 58.179 43.478 0.00 0.00 0.00 1.98
5453 7323 4.837860 AGATCACTAGAAGGCCCAATAGAG 59.162 45.833 0.00 0.00 0.00 2.43
5454 7324 3.995636 TCACTAGAAGGCCCAATAGAGT 58.004 45.455 0.00 0.00 0.00 3.24
5457 7327 0.466124 AGAAGGCCCAATAGAGTCGC 59.534 55.000 0.00 0.00 0.00 5.19
5459 7329 0.912486 AAGGCCCAATAGAGTCGCTT 59.088 50.000 0.00 0.00 0.00 4.68
5461 7331 0.178068 GGCCCAATAGAGTCGCTTGA 59.822 55.000 8.72 0.00 0.00 3.02
5471 7341 1.710339 GTCGCTTGACTCATTCCGC 59.290 57.895 0.00 0.00 39.61 5.54
5473 7343 0.458543 TCGCTTGACTCATTCCGCTC 60.459 55.000 0.00 0.00 0.00 5.03
5478 7348 3.057946 GCTTGACTCATTCCGCTCTTTTT 60.058 43.478 0.00 0.00 0.00 1.94
5479 7349 4.716943 CTTGACTCATTCCGCTCTTTTTC 58.283 43.478 0.00 0.00 0.00 2.29
5482 7352 3.077359 ACTCATTCCGCTCTTTTTCCTG 58.923 45.455 0.00 0.00 0.00 3.86
5484 7354 1.815003 CATTCCGCTCTTTTTCCTGCT 59.185 47.619 0.00 0.00 0.00 4.24
5485 7355 2.851263 TTCCGCTCTTTTTCCTGCTA 57.149 45.000 0.00 0.00 0.00 3.49
5487 7357 0.729690 CCGCTCTTTTTCCTGCTAGC 59.270 55.000 8.10 8.10 0.00 3.42
5489 7359 0.097849 GCTCTTTTTCCTGCTAGCGC 59.902 55.000 10.77 0.00 0.00 5.92
5493 7363 1.806542 CTTTTTCCTGCTAGCGCTTGA 59.193 47.619 23.12 0.47 36.97 3.02
5494 7364 1.890876 TTTTCCTGCTAGCGCTTGAA 58.109 45.000 23.12 11.60 36.97 2.69
5497 7367 1.375908 CCTGCTAGCGCTTGAACCA 60.376 57.895 23.12 9.96 36.97 3.67
5686 7556 9.658799 TTTGATCTTTTGTTACAAATTGTCCAA 57.341 25.926 11.50 4.52 0.00 3.53
5725 7595 2.540265 ATGCATAGGTAGCTGCTGTC 57.460 50.000 13.43 5.29 39.16 3.51
5730 7600 3.553096 GCATAGGTAGCTGCTGTCGTAAT 60.553 47.826 13.43 0.00 35.49 1.89
5733 7603 1.927174 GGTAGCTGCTGTCGTAATGTG 59.073 52.381 13.43 0.00 0.00 3.21
5736 7606 1.059369 CTGCTGTCGTAATGTGCGC 59.941 57.895 0.00 0.00 0.00 6.09
5739 7609 1.057208 CTGTCGTAATGTGCGCACG 59.943 57.895 33.22 22.15 37.03 5.34
5741 7611 1.056750 GTCGTAATGTGCGCACGTC 59.943 57.895 33.63 21.46 37.02 4.34
5746 7616 0.880718 TAATGTGCGCACGTCACCAA 60.881 50.000 33.63 16.17 33.71 3.67
5755 7625 1.268032 GCACGTCACCAAGTTTGAGTG 60.268 52.381 0.00 1.11 33.50 3.51
5807 7683 7.391833 GGTGGAGTTTGATTAGAGACTTCATTT 59.608 37.037 0.00 0.00 30.84 2.32
5816 7692 9.436957 TGATTAGAGACTTCATTTCTTTACACC 57.563 33.333 0.00 0.00 0.00 4.16
5817 7693 9.660180 GATTAGAGACTTCATTTCTTTACACCT 57.340 33.333 0.00 0.00 0.00 4.00
5818 7694 9.660180 ATTAGAGACTTCATTTCTTTACACCTC 57.340 33.333 0.00 0.00 0.00 3.85
5819 7695 7.067496 AGAGACTTCATTTCTTTACACCTCA 57.933 36.000 0.00 0.00 0.00 3.86
5820 7696 7.684529 AGAGACTTCATTTCTTTACACCTCAT 58.315 34.615 0.00 0.00 0.00 2.90
5821 7697 7.605691 AGAGACTTCATTTCTTTACACCTCATG 59.394 37.037 0.00 0.00 0.00 3.07
5822 7698 7.227156 AGACTTCATTTCTTTACACCTCATGT 58.773 34.615 0.00 0.00 46.06 3.21
5823 7699 7.721399 AGACTTCATTTCTTTACACCTCATGTT 59.279 33.333 0.00 0.00 43.19 2.71
5824 7700 7.875971 ACTTCATTTCTTTACACCTCATGTTC 58.124 34.615 0.00 0.00 43.19 3.18
5825 7701 6.817765 TCATTTCTTTACACCTCATGTTCC 57.182 37.500 0.00 0.00 43.19 3.62
5826 7702 5.710099 TCATTTCTTTACACCTCATGTTCCC 59.290 40.000 0.00 0.00 43.19 3.97
5827 7703 4.993705 TTCTTTACACCTCATGTTCCCT 57.006 40.909 0.00 0.00 43.19 4.20
5828 7704 6.442541 TTTCTTTACACCTCATGTTCCCTA 57.557 37.500 0.00 0.00 43.19 3.53
5829 7705 5.416271 TCTTTACACCTCATGTTCCCTAC 57.584 43.478 0.00 0.00 43.19 3.18
5830 7706 4.224370 TCTTTACACCTCATGTTCCCTACC 59.776 45.833 0.00 0.00 43.19 3.18
5831 7707 2.038863 ACACCTCATGTTCCCTACCA 57.961 50.000 0.00 0.00 38.98 3.25
5832 7708 2.562296 ACACCTCATGTTCCCTACCAT 58.438 47.619 0.00 0.00 38.98 3.55
5833 7709 2.239654 ACACCTCATGTTCCCTACCATG 59.760 50.000 0.00 0.00 38.98 3.66
5834 7710 2.239654 CACCTCATGTTCCCTACCATGT 59.760 50.000 0.00 0.00 0.00 3.21
5835 7711 2.919602 ACCTCATGTTCCCTACCATGTT 59.080 45.455 0.00 0.00 0.00 2.71
5836 7712 3.333680 ACCTCATGTTCCCTACCATGTTT 59.666 43.478 0.00 0.00 0.00 2.83
5837 7713 4.202673 ACCTCATGTTCCCTACCATGTTTT 60.203 41.667 0.00 0.00 0.00 2.43
5838 7714 4.158394 CCTCATGTTCCCTACCATGTTTTG 59.842 45.833 0.00 0.00 0.00 2.44
5839 7715 4.991776 TCATGTTCCCTACCATGTTTTGA 58.008 39.130 0.00 0.00 0.00 2.69
5840 7716 5.009631 TCATGTTCCCTACCATGTTTTGAG 58.990 41.667 0.00 0.00 0.00 3.02
5841 7717 4.447138 TGTTCCCTACCATGTTTTGAGT 57.553 40.909 0.00 0.00 0.00 3.41
5842 7718 4.798882 TGTTCCCTACCATGTTTTGAGTT 58.201 39.130 0.00 0.00 0.00 3.01
5843 7719 4.825085 TGTTCCCTACCATGTTTTGAGTTC 59.175 41.667 0.00 0.00 0.00 3.01
5844 7720 4.715534 TCCCTACCATGTTTTGAGTTCA 57.284 40.909 0.00 0.00 0.00 3.18
5845 7721 4.394729 TCCCTACCATGTTTTGAGTTCAC 58.605 43.478 0.00 0.00 0.00 3.18
5846 7722 4.141287 CCCTACCATGTTTTGAGTTCACA 58.859 43.478 0.00 0.00 0.00 3.58
5847 7723 4.582656 CCCTACCATGTTTTGAGTTCACAA 59.417 41.667 0.00 0.00 0.00 3.33
5848 7724 5.278463 CCCTACCATGTTTTGAGTTCACAAG 60.278 44.000 0.00 0.00 0.00 3.16
5849 7725 4.654091 ACCATGTTTTGAGTTCACAAGG 57.346 40.909 0.00 0.00 35.75 3.61
5850 7726 3.384467 ACCATGTTTTGAGTTCACAAGGG 59.616 43.478 0.00 0.00 34.27 3.95
5851 7727 3.383761 CATGTTTTGAGTTCACAAGGGC 58.616 45.455 0.00 0.00 0.00 5.19
5852 7728 2.451490 TGTTTTGAGTTCACAAGGGCA 58.549 42.857 0.00 0.00 0.00 5.36
5853 7729 2.165437 TGTTTTGAGTTCACAAGGGCAC 59.835 45.455 0.00 0.00 0.00 5.01
5854 7730 2.427095 GTTTTGAGTTCACAAGGGCACT 59.573 45.455 0.00 0.00 0.00 4.40
5855 7731 3.569194 TTTGAGTTCACAAGGGCACTA 57.431 42.857 0.00 0.00 0.00 2.74
5856 7732 3.788227 TTGAGTTCACAAGGGCACTAT 57.212 42.857 0.00 0.00 0.00 2.12
5857 7733 4.901197 TTGAGTTCACAAGGGCACTATA 57.099 40.909 0.00 0.00 0.00 1.31
5858 7734 4.471904 TGAGTTCACAAGGGCACTATAG 57.528 45.455 0.00 0.00 0.00 1.31
5859 7735 3.197766 TGAGTTCACAAGGGCACTATAGG 59.802 47.826 4.43 0.00 0.00 2.57
5860 7736 2.505819 AGTTCACAAGGGCACTATAGGG 59.494 50.000 4.43 0.00 0.00 3.53
5861 7737 2.504175 GTTCACAAGGGCACTATAGGGA 59.496 50.000 6.06 0.00 0.00 4.20
5862 7738 2.840511 TCACAAGGGCACTATAGGGAA 58.159 47.619 6.06 0.00 0.00 3.97
5863 7739 3.186283 TCACAAGGGCACTATAGGGAAA 58.814 45.455 6.06 0.00 0.00 3.13
5864 7740 3.589735 TCACAAGGGCACTATAGGGAAAA 59.410 43.478 6.06 0.00 0.00 2.29
5865 7741 3.947834 CACAAGGGCACTATAGGGAAAAG 59.052 47.826 6.06 0.00 0.00 2.27
5866 7742 3.850173 ACAAGGGCACTATAGGGAAAAGA 59.150 43.478 6.06 0.00 0.00 2.52
5867 7743 4.080299 ACAAGGGCACTATAGGGAAAAGAG 60.080 45.833 6.06 0.00 0.00 2.85
5868 7744 2.439880 AGGGCACTATAGGGAAAAGAGC 59.560 50.000 6.06 0.00 0.00 4.09
5869 7745 2.172717 GGGCACTATAGGGAAAAGAGCA 59.827 50.000 6.06 0.00 0.00 4.26
5870 7746 3.371595 GGGCACTATAGGGAAAAGAGCAA 60.372 47.826 6.06 0.00 0.00 3.91
5871 7747 3.879892 GGCACTATAGGGAAAAGAGCAAG 59.120 47.826 6.06 0.00 0.00 4.01
5872 7748 4.384208 GGCACTATAGGGAAAAGAGCAAGA 60.384 45.833 6.06 0.00 0.00 3.02
5873 7749 5.186198 GCACTATAGGGAAAAGAGCAAGAA 58.814 41.667 6.06 0.00 0.00 2.52
5874 7750 5.295540 GCACTATAGGGAAAAGAGCAAGAAG 59.704 44.000 6.06 0.00 0.00 2.85
5875 7751 6.644347 CACTATAGGGAAAAGAGCAAGAAGA 58.356 40.000 4.43 0.00 0.00 2.87
5876 7752 6.760770 CACTATAGGGAAAAGAGCAAGAAGAG 59.239 42.308 4.43 0.00 0.00 2.85
5877 7753 2.789213 AGGGAAAAGAGCAAGAAGAGC 58.211 47.619 0.00 0.00 0.00 4.09
5878 7754 1.815613 GGGAAAAGAGCAAGAAGAGCC 59.184 52.381 0.00 0.00 0.00 4.70
5879 7755 2.554124 GGGAAAAGAGCAAGAAGAGCCT 60.554 50.000 0.00 0.00 0.00 4.58
5880 7756 3.307762 GGGAAAAGAGCAAGAAGAGCCTA 60.308 47.826 0.00 0.00 0.00 3.93
5881 7757 3.687212 GGAAAAGAGCAAGAAGAGCCTAC 59.313 47.826 0.00 0.00 0.00 3.18
5882 7758 3.342377 AAAGAGCAAGAAGAGCCTACC 57.658 47.619 0.00 0.00 0.00 3.18
5883 7759 2.246091 AGAGCAAGAAGAGCCTACCT 57.754 50.000 0.00 0.00 0.00 3.08
5884 7760 1.830477 AGAGCAAGAAGAGCCTACCTG 59.170 52.381 0.00 0.00 0.00 4.00
5885 7761 0.908198 AGCAAGAAGAGCCTACCTGG 59.092 55.000 0.00 0.00 39.35 4.45
5886 7762 0.615850 GCAAGAAGAGCCTACCTGGT 59.384 55.000 4.05 4.05 38.35 4.00
5887 7763 1.406205 GCAAGAAGAGCCTACCTGGTC 60.406 57.143 0.63 0.00 38.35 4.02
5888 7764 1.902508 CAAGAAGAGCCTACCTGGTCA 59.097 52.381 0.63 0.00 38.35 4.02
5889 7765 2.303022 CAAGAAGAGCCTACCTGGTCAA 59.697 50.000 0.63 0.00 38.35 3.18
5890 7766 1.903183 AGAAGAGCCTACCTGGTCAAC 59.097 52.381 0.63 0.00 38.35 3.18
5891 7767 1.623811 GAAGAGCCTACCTGGTCAACA 59.376 52.381 0.63 0.00 38.35 3.33
5910 7786 5.741388 AACAGAAGTTGCTTTCAGTGTAG 57.259 39.130 0.00 0.00 36.39 2.74
5911 7787 5.023533 ACAGAAGTTGCTTTCAGTGTAGA 57.976 39.130 0.00 0.00 0.00 2.59
5912 7788 5.053145 ACAGAAGTTGCTTTCAGTGTAGAG 58.947 41.667 0.00 0.00 0.00 2.43
5913 7789 4.061596 AGAAGTTGCTTTCAGTGTAGAGC 58.938 43.478 7.78 7.78 35.74 4.09
5914 7790 2.408050 AGTTGCTTTCAGTGTAGAGCG 58.592 47.619 9.41 0.00 37.94 5.03
5915 7791 2.135933 GTTGCTTTCAGTGTAGAGCGT 58.864 47.619 9.41 0.00 37.94 5.07
5916 7792 2.065993 TGCTTTCAGTGTAGAGCGTC 57.934 50.000 9.41 0.00 37.94 5.19
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
148 185 6.094048 CGATCTCTCTGACTCTTCTTCTTCTT 59.906 42.308 0.00 0.00 0.00 2.52
152 189 4.080582 TCCGATCTCTCTGACTCTTCTTCT 60.081 45.833 0.00 0.00 0.00 2.85
153 190 4.196193 TCCGATCTCTCTGACTCTTCTTC 58.804 47.826 0.00 0.00 0.00 2.87
154 191 4.229304 TCCGATCTCTCTGACTCTTCTT 57.771 45.455 0.00 0.00 0.00 2.52
155 192 3.924114 TCCGATCTCTCTGACTCTTCT 57.076 47.619 0.00 0.00 0.00 2.85
156 193 4.974368 TTTCCGATCTCTCTGACTCTTC 57.026 45.455 0.00 0.00 0.00 2.87
157 194 5.013547 TCTTTTCCGATCTCTCTGACTCTT 58.986 41.667 0.00 0.00 0.00 2.85
158 195 4.594970 TCTTTTCCGATCTCTCTGACTCT 58.405 43.478 0.00 0.00 0.00 3.24
159 196 4.974368 TCTTTTCCGATCTCTCTGACTC 57.026 45.455 0.00 0.00 0.00 3.36
160 197 5.730296 TTTCTTTTCCGATCTCTCTGACT 57.270 39.130 0.00 0.00 0.00 3.41
161 198 6.128418 CCTTTTTCTTTTCCGATCTCTCTGAC 60.128 42.308 0.00 0.00 0.00 3.51
162 199 5.934625 CCTTTTTCTTTTCCGATCTCTCTGA 59.065 40.000 0.00 0.00 0.00 3.27
163 200 5.703130 ACCTTTTTCTTTTCCGATCTCTCTG 59.297 40.000 0.00 0.00 0.00 3.35
254 304 4.154347 GAGGAGGGCGCTGACTGG 62.154 72.222 8.56 0.00 0.00 4.00
255 305 2.570582 GAAGAGGAGGGCGCTGACTG 62.571 65.000 8.56 0.00 0.00 3.51
256 306 2.284258 AAGAGGAGGGCGCTGACT 60.284 61.111 8.56 6.11 0.00 3.41
257 307 2.185608 GAAGAGGAGGGCGCTGAC 59.814 66.667 8.56 0.23 0.00 3.51
258 308 3.077556 GGAAGAGGAGGGCGCTGA 61.078 66.667 8.56 0.00 0.00 4.26
259 309 3.080121 AGGAAGAGGAGGGCGCTG 61.080 66.667 8.56 0.00 0.00 5.18
260 310 2.762043 GAGGAAGAGGAGGGCGCT 60.762 66.667 7.64 1.38 0.00 5.92
261 311 2.660064 TTGAGGAAGAGGAGGGCGC 61.660 63.158 0.00 0.00 0.00 6.53
262 312 1.219393 GTTGAGGAAGAGGAGGGCG 59.781 63.158 0.00 0.00 0.00 6.13
263 313 1.604915 GGTTGAGGAAGAGGAGGGC 59.395 63.158 0.00 0.00 0.00 5.19
264 314 0.547712 TGGGTTGAGGAAGAGGAGGG 60.548 60.000 0.00 0.00 0.00 4.30
341 398 2.093658 TCCGAAATTACTCACAGAGGGC 60.094 50.000 0.00 0.00 33.35 5.19
361 418 4.933064 CGGCCGATCGAGCAGGTC 62.933 72.222 24.07 3.68 0.00 3.85
432 493 8.611051 ATCCCTAACAAGAACTGAATACTAGT 57.389 34.615 0.00 0.00 0.00 2.57
461 522 4.711949 AGCGAACAGGCAGCAGGG 62.712 66.667 0.00 0.00 34.64 4.45
501 562 7.042187 GCTCTGATTAGTGATTGGAACATACAG 60.042 40.741 0.00 0.00 39.30 2.74
530 601 1.948721 GAAAAATCCCCTGCCCTGCG 61.949 60.000 0.00 0.00 0.00 5.18
602 682 4.212214 CGGCAGCCTAATAATCAGAAGAAC 59.788 45.833 10.54 0.00 0.00 3.01
636 716 5.010112 TCTGACTAATTAAGCCCTGATCGAG 59.990 44.000 0.00 0.00 0.00 4.04
657 737 2.358737 GTGCCGGGTTCCTGTCTG 60.359 66.667 2.18 0.00 0.00 3.51
663 743 4.265056 ACAGTGGTGCCGGGTTCC 62.265 66.667 2.18 0.00 0.00 3.62
742 822 3.118454 GTCCGACATGTGTGCGGG 61.118 66.667 20.58 7.23 41.89 6.13
743 823 3.118454 GGTCCGACATGTGTGCGG 61.118 66.667 16.25 16.25 42.49 5.69
777 871 3.548415 GCCTAGCATCGACTGTACTGTAC 60.548 52.174 10.98 10.98 0.00 2.90
818 917 3.694058 AAGCCGAGCAGATGCCTGG 62.694 63.158 0.14 4.92 43.38 4.45
835 934 1.536766 CAAGCAGAGCAATTCGGACAA 59.463 47.619 0.00 0.00 0.00 3.18
838 937 1.806542 GAACAAGCAGAGCAATTCGGA 59.193 47.619 0.00 0.00 0.00 4.55
839 938 1.808945 AGAACAAGCAGAGCAATTCGG 59.191 47.619 0.00 0.00 0.00 4.30
841 940 2.030540 TGCAGAACAAGCAGAGCAATTC 60.031 45.455 0.00 0.00 37.02 2.17
842 941 1.958579 TGCAGAACAAGCAGAGCAATT 59.041 42.857 0.00 0.00 37.02 2.32
863 986 1.462670 GGCGAGAGAAGCTCTGTTTTG 59.537 52.381 1.02 0.00 41.35 2.44
882 1005 1.153208 CTGGGCAGCTAAGCAGAGG 60.153 63.158 0.00 0.00 35.83 3.69
922 1046 5.466728 TCAACAGCAGACAACAAGAGAATAC 59.533 40.000 0.00 0.00 0.00 1.89
923 1047 5.610398 TCAACAGCAGACAACAAGAGAATA 58.390 37.500 0.00 0.00 0.00 1.75
924 1048 4.454678 TCAACAGCAGACAACAAGAGAAT 58.545 39.130 0.00 0.00 0.00 2.40
926 1050 3.541996 TCAACAGCAGACAACAAGAGA 57.458 42.857 0.00 0.00 0.00 3.10
927 1051 4.825546 ATTCAACAGCAGACAACAAGAG 57.174 40.909 0.00 0.00 0.00 2.85
931 1055 4.793678 GCATGAATTCAACAGCAGACAACA 60.794 41.667 13.09 0.00 0.00 3.33
932 1056 3.671928 GCATGAATTCAACAGCAGACAAC 59.328 43.478 13.09 0.00 0.00 3.32
934 1058 3.057806 CAGCATGAATTCAACAGCAGACA 60.058 43.478 23.88 0.00 39.69 3.41
935 1059 3.189910 TCAGCATGAATTCAACAGCAGAC 59.810 43.478 23.88 6.51 45.97 3.51
983 1119 2.223971 GCCATACTGCCTTAACGCTCTA 60.224 50.000 0.00 0.00 0.00 2.43
1062 1199 3.003173 AGCTGCTTCCTGGCCGTA 61.003 61.111 0.00 0.00 0.00 4.02
1063 1200 4.400961 GAGCTGCTTCCTGGCCGT 62.401 66.667 2.53 0.00 0.00 5.68
1066 1203 2.124778 GGAGAGCTGCTTCCTGGC 60.125 66.667 17.89 0.67 0.00 4.85
1128 1265 0.609406 GGAAACTGCACCTTCTCCCC 60.609 60.000 3.66 0.00 0.00 4.81
1266 1428 4.518249 AGAATGAAGTAAGCAGGTAAGCC 58.482 43.478 0.00 0.00 34.23 4.35
1273 1435 5.106396 CCACAGGAAAGAATGAAGTAAGCAG 60.106 44.000 0.00 0.00 0.00 4.24
1278 1440 5.306937 TGACTCCACAGGAAAGAATGAAGTA 59.693 40.000 0.00 0.00 0.00 2.24
1283 1445 6.404074 GCTTATTGACTCCACAGGAAAGAATG 60.404 42.308 0.00 0.00 0.00 2.67
1287 1455 4.583871 AGCTTATTGACTCCACAGGAAAG 58.416 43.478 0.00 0.00 0.00 2.62
1425 1602 6.990798 TGATATGCTAAATCTCCTGACAGAG 58.009 40.000 3.32 0.00 35.04 3.35
1476 1668 4.760715 CCTGATCCAGAAGCCAATCATAAG 59.239 45.833 0.00 0.00 32.44 1.73
1478 1670 3.718434 ACCTGATCCAGAAGCCAATCATA 59.282 43.478 0.00 0.00 32.44 2.15
1641 1837 2.951642 AGACCCATGGTTTCATATTGCG 59.048 45.455 11.73 0.00 35.25 4.85
2123 2362 6.012596 TGGTCATTGGCAGTATATGTCCATAT 60.013 38.462 10.50 5.23 34.22 1.78
2124 2363 5.309282 TGGTCATTGGCAGTATATGTCCATA 59.691 40.000 10.50 0.00 34.22 2.74
2127 2366 4.085357 TGGTCATTGGCAGTATATGTCC 57.915 45.455 6.31 6.31 29.99 4.02
2128 2367 4.083110 GCATGGTCATTGGCAGTATATGTC 60.083 45.833 0.00 0.00 0.00 3.06
2131 2370 3.424703 GGCATGGTCATTGGCAGTATAT 58.575 45.455 0.00 0.00 0.00 0.86
2132 2371 2.810032 CGGCATGGTCATTGGCAGTATA 60.810 50.000 0.00 0.00 0.00 1.47
2134 2373 0.747644 CGGCATGGTCATTGGCAGTA 60.748 55.000 0.00 0.00 0.00 2.74
2135 2374 2.048023 CGGCATGGTCATTGGCAGT 61.048 57.895 0.00 0.00 0.00 4.40
2136 2375 2.802792 CGGCATGGTCATTGGCAG 59.197 61.111 0.00 0.00 0.00 4.85
2139 2378 1.361271 GATGCGGCATGGTCATTGG 59.639 57.895 21.98 0.00 0.00 3.16
2141 2380 1.731433 GCTGATGCGGCATGGTCATT 61.731 55.000 21.98 0.00 35.55 2.57
2143 2382 2.825387 GCTGATGCGGCATGGTCA 60.825 61.111 21.98 12.33 35.55 4.02
2149 2388 0.107268 ATAGATGTGCTGATGCGGCA 59.893 50.000 4.58 4.58 44.04 5.69
2185 2471 6.106003 ACATAACAGAGCATGTGTATTTCGA 58.894 36.000 0.00 0.00 44.43 3.71
2253 2547 4.074970 AGAGATGGTCAATCACAAACCAC 58.925 43.478 0.00 0.00 45.36 4.16
2359 2843 7.215755 GCGTAATTCGATAAGTTTGAGTTTTCC 59.784 37.037 0.00 0.00 42.86 3.13
2559 3043 2.023181 CCGCGGTCGAATTGCATG 59.977 61.111 19.50 0.00 38.10 4.06
2688 3183 4.778579 AGGACTCATGGAGATGTTGATTG 58.221 43.478 0.00 0.00 33.32 2.67
2820 3318 6.402983 CCTCTGCGATTATTAGAATTGGATGC 60.403 42.308 0.00 0.00 0.00 3.91
2821 3319 6.875726 TCCTCTGCGATTATTAGAATTGGATG 59.124 38.462 0.00 0.00 0.00 3.51
2996 3494 5.334646 GGACACATCATATAGCACTTGCATG 60.335 44.000 3.62 0.00 45.16 4.06
2997 3495 4.758674 GGACACATCATATAGCACTTGCAT 59.241 41.667 3.62 0.00 45.16 3.96
3003 3503 5.007039 CACAACAGGACACATCATATAGCAC 59.993 44.000 0.00 0.00 0.00 4.40
3004 3504 5.104982 TCACAACAGGACACATCATATAGCA 60.105 40.000 0.00 0.00 0.00 3.49
3005 3505 5.359756 TCACAACAGGACACATCATATAGC 58.640 41.667 0.00 0.00 0.00 2.97
3006 3506 9.716531 AATATCACAACAGGACACATCATATAG 57.283 33.333 0.00 0.00 0.00 1.31
3007 3507 9.492973 CAATATCACAACAGGACACATCATATA 57.507 33.333 0.00 0.00 0.00 0.86
3290 3802 6.825721 AGCAAAAAGAGACAGAAAAGAGAGAA 59.174 34.615 0.00 0.00 0.00 2.87
3301 3935 5.382618 AAATAGGCAGCAAAAAGAGACAG 57.617 39.130 0.00 0.00 0.00 3.51
3303 3937 5.047731 AGGAAAATAGGCAGCAAAAAGAGAC 60.048 40.000 0.00 0.00 0.00 3.36
3330 4112 6.787085 AGACAAACTGTTGAAGCTATGTAC 57.213 37.500 0.00 0.00 38.20 2.90
3382 4171 6.919721 TGGACAAAACATTAGTTAAGGCATC 58.080 36.000 0.00 0.00 36.84 3.91
3411 4203 5.934625 TCAGAAGCCTGAAAGTCAAAGATAC 59.065 40.000 0.00 0.00 45.74 2.24
3451 4246 4.508492 GCTATCCTCTCGTTTAGCTTTTCC 59.492 45.833 0.00 0.00 35.34 3.13
3478 4273 1.078426 AGCAACACCACCGGATAGC 60.078 57.895 9.46 1.74 0.00 2.97
3512 4307 3.430931 GCAGCTTAACGTGAAACAACAA 58.569 40.909 0.00 0.00 35.74 2.83
3620 4439 4.439289 GCTCCAACCTACAAATCAAGATGC 60.439 45.833 0.00 0.00 0.00 3.91
3665 4484 7.664758 CATCTTCAACCCTCAATTTCTTTTCT 58.335 34.615 0.00 0.00 0.00 2.52
3714 4533 3.149196 TCAGATTTGCACCAGGAAAGAC 58.851 45.455 0.00 0.00 38.50 3.01
3716 4535 4.219070 TCAATCAGATTTGCACCAGGAAAG 59.781 41.667 0.00 0.00 38.50 2.62
3718 4537 3.765381 TCAATCAGATTTGCACCAGGAA 58.235 40.909 0.00 0.00 0.00 3.36
3746 4945 6.205658 TCTCTGGATGAGATATACACAAGTCG 59.794 42.308 0.00 0.00 46.03 4.18
3848 5266 5.001232 GCCTGTCCACAAAAGAATACAGTA 58.999 41.667 0.00 0.00 34.02 2.74
3911 5329 7.230510 TCAACTTTAGATGCAAGCCTTAAAAGA 59.769 33.333 12.41 0.00 0.00 2.52
3929 5347 7.234577 AGGGTTTCTTTAATGGCATCAACTTTA 59.765 33.333 0.00 0.00 0.00 1.85
4029 5449 3.971245 AACAGCACCTTGAACCAAAAA 57.029 38.095 0.00 0.00 0.00 1.94
4147 5572 0.878416 TGCCATTAACACCAGCGTTC 59.122 50.000 0.00 0.00 0.00 3.95
4178 5603 8.708378 AGAAGAAATCTGAATCCAAACCTTTTT 58.292 29.630 0.00 0.00 36.88 1.94
4248 5674 3.672295 CTGGACGAAGGCAGGCTCC 62.672 68.421 0.00 0.00 0.00 4.70
4364 5791 3.479489 AGATGTCAACACAATGTGCTGA 58.521 40.909 14.66 14.66 36.48 4.26
4365 5792 3.909776 AGATGTCAACACAATGTGCTG 57.090 42.857 14.01 12.00 36.98 4.41
4370 5797 8.229137 ACAAAACAAAAAGATGTCAACACAATG 58.771 29.630 0.00 0.00 35.64 2.82
4476 5905 5.711976 CAGCAAAATATAATAGACCTGGGGG 59.288 44.000 0.00 0.00 38.88 5.40
4829 6364 7.172532 ACGAGCACATATTTTCTAAACAAGTCA 59.827 33.333 0.00 0.00 0.00 3.41
5036 6803 3.462483 TTAAAGAACACTCACGCTCCA 57.538 42.857 0.00 0.00 0.00 3.86
5217 7009 6.314648 CAGTCCCAATCATCGTTCCATATATG 59.685 42.308 5.68 5.68 0.00 1.78
5259 7116 3.003275 CCGAAGTTGCAGTGTTACATGTT 59.997 43.478 2.30 0.00 0.00 2.71
5264 7121 1.263217 CCACCGAAGTTGCAGTGTTAC 59.737 52.381 1.46 0.00 0.00 2.50
5314 7176 3.659092 CCCGACGCAGCAAAGCAA 61.659 61.111 0.00 0.00 0.00 3.91
5322 7188 4.619227 AACCACCACCCGACGCAG 62.619 66.667 0.00 0.00 0.00 5.18
5324 7190 4.309950 AGAACCACCACCCGACGC 62.310 66.667 0.00 0.00 0.00 5.19
5325 7191 2.048503 GAGAACCACCACCCGACG 60.049 66.667 0.00 0.00 0.00 5.12
5326 7192 1.292541 GAGAGAACCACCACCCGAC 59.707 63.158 0.00 0.00 0.00 4.79
5327 7193 1.152419 TGAGAGAACCACCACCCGA 60.152 57.895 0.00 0.00 0.00 5.14
5328 7194 1.293498 CTGAGAGAACCACCACCCG 59.707 63.158 0.00 0.00 0.00 5.28
5329 7195 1.003233 GCTGAGAGAACCACCACCC 60.003 63.158 0.00 0.00 0.00 4.61
5330 7196 1.003233 GGCTGAGAGAACCACCACC 60.003 63.158 0.00 0.00 0.00 4.61
5331 7197 1.374758 CGGCTGAGAGAACCACCAC 60.375 63.158 0.00 0.00 0.00 4.16
5332 7198 0.904865 ATCGGCTGAGAGAACCACCA 60.905 55.000 0.00 0.00 0.00 4.17
5349 7215 4.273148 ACTGGGCCTATCGTATTTGATC 57.727 45.455 4.53 0.00 0.00 2.92
5383 7253 4.208686 CTAGTGGCGAGCCGACCC 62.209 72.222 9.78 0.00 39.42 4.46
5386 7256 1.605710 GTATTACTAGTGGCGAGCCGA 59.394 52.381 5.39 0.00 39.42 5.54
5388 7258 2.621998 TCAGTATTACTAGTGGCGAGCC 59.378 50.000 5.39 7.26 0.00 4.70
5419 7289 5.106118 CCTTCTAGTGATCTCGAAGTTGACA 60.106 44.000 9.89 0.00 39.98 3.58
5420 7290 5.336744 CCTTCTAGTGATCTCGAAGTTGAC 58.663 45.833 9.89 0.00 39.98 3.18
5438 7308 0.466124 GCGACTCTATTGGGCCTTCT 59.534 55.000 4.53 0.00 0.00 2.85
5439 7309 0.466124 AGCGACTCTATTGGGCCTTC 59.534 55.000 4.53 0.00 0.00 3.46
5440 7310 0.912486 AAGCGACTCTATTGGGCCTT 59.088 50.000 4.53 0.00 0.00 4.35
5441 7311 0.179000 CAAGCGACTCTATTGGGCCT 59.821 55.000 4.53 0.00 0.00 5.19
5442 7312 0.178068 TCAAGCGACTCTATTGGGCC 59.822 55.000 0.00 0.00 0.00 5.80
5443 7313 1.291132 GTCAAGCGACTCTATTGGGC 58.709 55.000 0.00 0.00 39.22 5.36
5453 7323 0.737715 AGCGGAATGAGTCAAGCGAC 60.738 55.000 0.00 0.00 42.95 5.19
5454 7324 0.458543 GAGCGGAATGAGTCAAGCGA 60.459 55.000 0.00 0.00 36.77 4.93
5457 7327 4.378874 GGAAAAAGAGCGGAATGAGTCAAG 60.379 45.833 0.00 0.00 0.00 3.02
5459 7329 3.074412 GGAAAAAGAGCGGAATGAGTCA 58.926 45.455 0.00 0.00 0.00 3.41
5461 7331 3.077359 CAGGAAAAAGAGCGGAATGAGT 58.923 45.455 0.00 0.00 0.00 3.41
5463 7333 1.812571 GCAGGAAAAAGAGCGGAATGA 59.187 47.619 0.00 0.00 0.00 2.57
5482 7352 2.415697 TTTTTGGTTCAAGCGCTAGC 57.584 45.000 12.05 5.45 45.58 3.42
5663 7533 9.914923 GTTTTGGACAATTTGTAACAAAAGATC 57.085 29.630 27.45 19.14 42.48 2.75
5665 7535 8.833231 TGTTTTGGACAATTTGTAACAAAAGA 57.167 26.923 27.45 25.30 42.48 2.52
5666 7536 9.540431 CTTGTTTTGGACAATTTGTAACAAAAG 57.460 29.630 27.45 19.29 46.58 2.27
5667 7537 9.057089 ACTTGTTTTGGACAATTTGTAACAAAA 57.943 25.926 25.26 25.26 46.58 2.44
5668 7538 8.608844 ACTTGTTTTGGACAATTTGTAACAAA 57.391 26.923 20.43 20.05 46.58 2.83
5669 7539 8.608844 AACTTGTTTTGGACAATTTGTAACAA 57.391 26.923 19.53 19.53 46.58 2.83
5670 7540 9.706691 TTAACTTGTTTTGGACAATTTGTAACA 57.293 25.926 10.20 10.20 46.58 2.41
5671 7541 9.961266 GTTAACTTGTTTTGGACAATTTGTAAC 57.039 29.630 1.15 4.21 46.58 2.50
5672 7542 9.930693 AGTTAACTTGTTTTGGACAATTTGTAA 57.069 25.926 1.12 0.00 46.58 2.41
5673 7543 9.930693 AAGTTAACTTGTTTTGGACAATTTGTA 57.069 25.926 19.94 0.00 46.58 2.41
5674 7544 8.716909 CAAGTTAACTTGTTTTGGACAATTTGT 58.283 29.630 31.55 0.63 46.58 2.83
5701 7571 3.683340 CAGCAGCTACCTATGCATATGTG 59.317 47.826 20.90 13.25 45.01 3.21
5703 7573 3.931468 GACAGCAGCTACCTATGCATATG 59.069 47.826 6.92 7.18 45.01 1.78
5705 7575 2.029918 CGACAGCAGCTACCTATGCATA 60.030 50.000 6.20 6.20 45.01 3.14
5712 7582 1.825474 ACATTACGACAGCAGCTACCT 59.175 47.619 0.00 0.00 0.00 3.08
5716 7586 1.354337 CGCACATTACGACAGCAGCT 61.354 55.000 0.00 0.00 0.00 4.24
5725 7595 1.225368 GTGACGTGCGCACATTACG 60.225 57.895 37.03 26.00 42.98 3.18
5730 7600 3.268603 CTTGGTGACGTGCGCACA 61.269 61.111 37.03 18.11 37.99 4.57
5733 7603 1.654137 CAAACTTGGTGACGTGCGC 60.654 57.895 0.00 0.00 0.00 6.09
5736 7606 1.268032 GCACTCAAACTTGGTGACGTG 60.268 52.381 0.00 0.00 33.82 4.49
5739 7609 2.017049 AGTGCACTCAAACTTGGTGAC 58.983 47.619 15.25 8.83 33.82 3.67
5741 7611 4.630894 TTAAGTGCACTCAAACTTGGTG 57.369 40.909 21.95 6.67 37.23 4.17
5746 7616 8.345565 CAACTTCTAATTAAGTGCACTCAAACT 58.654 33.333 21.95 10.30 39.62 2.66
5807 7683 4.224370 GGTAGGGAACATGAGGTGTAAAGA 59.776 45.833 0.00 0.00 41.14 2.52
5813 7689 2.239654 ACATGGTAGGGAACATGAGGTG 59.760 50.000 9.85 0.00 45.55 4.00
5814 7690 2.562296 ACATGGTAGGGAACATGAGGT 58.438 47.619 9.85 0.00 45.55 3.85
5815 7691 3.652057 AACATGGTAGGGAACATGAGG 57.348 47.619 9.85 0.00 45.55 3.86
5816 7692 5.009631 TCAAAACATGGTAGGGAACATGAG 58.990 41.667 9.85 0.00 45.55 2.90
5817 7693 4.991776 TCAAAACATGGTAGGGAACATGA 58.008 39.130 9.85 0.00 45.55 3.07
5819 7695 4.998051 ACTCAAAACATGGTAGGGAACAT 58.002 39.130 0.00 0.00 0.00 2.71
5820 7696 4.447138 ACTCAAAACATGGTAGGGAACA 57.553 40.909 0.00 0.00 0.00 3.18
5821 7697 4.825085 TGAACTCAAAACATGGTAGGGAAC 59.175 41.667 0.00 0.00 0.00 3.62
5822 7698 4.825085 GTGAACTCAAAACATGGTAGGGAA 59.175 41.667 0.00 0.00 0.00 3.97
5823 7699 4.141367 TGTGAACTCAAAACATGGTAGGGA 60.141 41.667 0.00 0.00 0.00 4.20
5824 7700 4.141287 TGTGAACTCAAAACATGGTAGGG 58.859 43.478 0.00 0.00 0.00 3.53
5825 7701 5.278463 CCTTGTGAACTCAAAACATGGTAGG 60.278 44.000 0.00 0.00 35.48 3.18
5826 7702 5.278463 CCCTTGTGAACTCAAAACATGGTAG 60.278 44.000 0.00 0.00 37.40 3.18
5827 7703 4.582656 CCCTTGTGAACTCAAAACATGGTA 59.417 41.667 0.00 0.00 37.40 3.25
5828 7704 3.384467 CCCTTGTGAACTCAAAACATGGT 59.616 43.478 0.00 0.00 37.40 3.55
5829 7705 3.799917 GCCCTTGTGAACTCAAAACATGG 60.800 47.826 0.00 0.00 38.32 3.66
5830 7706 3.181477 TGCCCTTGTGAACTCAAAACATG 60.181 43.478 0.00 0.00 0.00 3.21
5831 7707 3.030291 TGCCCTTGTGAACTCAAAACAT 58.970 40.909 0.00 0.00 0.00 2.71
5832 7708 2.165437 GTGCCCTTGTGAACTCAAAACA 59.835 45.455 0.00 0.00 0.00 2.83
5833 7709 2.427095 AGTGCCCTTGTGAACTCAAAAC 59.573 45.455 0.00 0.00 0.00 2.43
5834 7710 2.733956 AGTGCCCTTGTGAACTCAAAA 58.266 42.857 0.00 0.00 0.00 2.44
5835 7711 2.435372 AGTGCCCTTGTGAACTCAAA 57.565 45.000 0.00 0.00 0.00 2.69
5836 7712 3.788227 ATAGTGCCCTTGTGAACTCAA 57.212 42.857 0.00 0.00 0.00 3.02
5837 7713 3.197766 CCTATAGTGCCCTTGTGAACTCA 59.802 47.826 0.00 0.00 0.00 3.41
5838 7714 3.432326 CCCTATAGTGCCCTTGTGAACTC 60.432 52.174 0.00 0.00 0.00 3.01
5839 7715 2.505819 CCCTATAGTGCCCTTGTGAACT 59.494 50.000 0.00 0.00 0.00 3.01
5840 7716 2.504175 TCCCTATAGTGCCCTTGTGAAC 59.496 50.000 0.00 0.00 0.00 3.18
5841 7717 2.840511 TCCCTATAGTGCCCTTGTGAA 58.159 47.619 0.00 0.00 0.00 3.18
5842 7718 2.561209 TCCCTATAGTGCCCTTGTGA 57.439 50.000 0.00 0.00 0.00 3.58
5843 7719 3.644966 TTTCCCTATAGTGCCCTTGTG 57.355 47.619 0.00 0.00 0.00 3.33
5844 7720 3.850173 TCTTTTCCCTATAGTGCCCTTGT 59.150 43.478 0.00 0.00 0.00 3.16
5845 7721 4.455606 CTCTTTTCCCTATAGTGCCCTTG 58.544 47.826 0.00 0.00 0.00 3.61
5846 7722 3.117851 GCTCTTTTCCCTATAGTGCCCTT 60.118 47.826 0.00 0.00 0.00 3.95
5847 7723 2.439880 GCTCTTTTCCCTATAGTGCCCT 59.560 50.000 0.00 0.00 0.00 5.19
5848 7724 2.172717 TGCTCTTTTCCCTATAGTGCCC 59.827 50.000 0.00 0.00 0.00 5.36
5849 7725 3.560636 TGCTCTTTTCCCTATAGTGCC 57.439 47.619 0.00 0.00 0.00 5.01
5850 7726 4.770795 TCTTGCTCTTTTCCCTATAGTGC 58.229 43.478 0.00 0.00 0.00 4.40
5851 7727 6.644347 TCTTCTTGCTCTTTTCCCTATAGTG 58.356 40.000 0.00 0.00 0.00 2.74
5852 7728 6.631540 GCTCTTCTTGCTCTTTTCCCTATAGT 60.632 42.308 0.00 0.00 0.00 2.12
5853 7729 5.757808 GCTCTTCTTGCTCTTTTCCCTATAG 59.242 44.000 0.00 0.00 0.00 1.31
5854 7730 5.396884 GGCTCTTCTTGCTCTTTTCCCTATA 60.397 44.000 0.00 0.00 0.00 1.31
5855 7731 4.522114 GCTCTTCTTGCTCTTTTCCCTAT 58.478 43.478 0.00 0.00 0.00 2.57
5856 7732 3.307762 GGCTCTTCTTGCTCTTTTCCCTA 60.308 47.826 0.00 0.00 0.00 3.53
5857 7733 2.554124 GGCTCTTCTTGCTCTTTTCCCT 60.554 50.000 0.00 0.00 0.00 4.20
5858 7734 1.815613 GGCTCTTCTTGCTCTTTTCCC 59.184 52.381 0.00 0.00 0.00 3.97
5859 7735 2.789213 AGGCTCTTCTTGCTCTTTTCC 58.211 47.619 0.00 0.00 0.00 3.13
5860 7736 3.687212 GGTAGGCTCTTCTTGCTCTTTTC 59.313 47.826 0.00 0.00 0.00 2.29
5861 7737 3.329225 AGGTAGGCTCTTCTTGCTCTTTT 59.671 43.478 0.00 0.00 0.00 2.27
5862 7738 2.909662 AGGTAGGCTCTTCTTGCTCTTT 59.090 45.455 0.00 0.00 0.00 2.52
5863 7739 2.235898 CAGGTAGGCTCTTCTTGCTCTT 59.764 50.000 0.00 0.00 0.00 2.85
5864 7740 1.830477 CAGGTAGGCTCTTCTTGCTCT 59.170 52.381 0.00 0.00 0.00 4.09
5865 7741 1.134551 CCAGGTAGGCTCTTCTTGCTC 60.135 57.143 0.00 0.00 0.00 4.26
5866 7742 0.908198 CCAGGTAGGCTCTTCTTGCT 59.092 55.000 0.00 0.00 0.00 3.91
5867 7743 0.615850 ACCAGGTAGGCTCTTCTTGC 59.384 55.000 0.00 0.00 43.14 4.01
5868 7744 1.902508 TGACCAGGTAGGCTCTTCTTG 59.097 52.381 0.00 0.00 43.14 3.02
5869 7745 2.303311 GTTGACCAGGTAGGCTCTTCTT 59.697 50.000 0.00 0.00 43.14 2.52
5870 7746 1.903183 GTTGACCAGGTAGGCTCTTCT 59.097 52.381 0.00 0.00 43.14 2.85
5871 7747 1.623811 TGTTGACCAGGTAGGCTCTTC 59.376 52.381 0.00 0.00 43.14 2.87
5872 7748 1.625818 CTGTTGACCAGGTAGGCTCTT 59.374 52.381 0.00 0.00 43.14 2.85
5873 7749 1.203187 TCTGTTGACCAGGTAGGCTCT 60.203 52.381 0.00 0.00 43.14 4.09
5874 7750 1.267121 TCTGTTGACCAGGTAGGCTC 58.733 55.000 0.00 0.00 43.14 4.70
5875 7751 1.625818 CTTCTGTTGACCAGGTAGGCT 59.374 52.381 0.00 0.00 43.14 4.58
5876 7752 1.348036 ACTTCTGTTGACCAGGTAGGC 59.652 52.381 0.00 0.00 43.14 3.93
5877 7753 3.771577 AACTTCTGTTGACCAGGTAGG 57.228 47.619 0.00 0.00 41.83 3.18
5888 7764 5.428253 TCTACACTGAAAGCAACTTCTGTT 58.572 37.500 3.91 0.00 37.60 3.16
5889 7765 5.023533 TCTACACTGAAAGCAACTTCTGT 57.976 39.130 0.00 0.00 37.60 3.41
5890 7766 4.084118 GCTCTACACTGAAAGCAACTTCTG 60.084 45.833 0.00 0.00 37.60 3.02
5891 7767 4.061596 GCTCTACACTGAAAGCAACTTCT 58.938 43.478 0.00 0.00 37.60 2.85
5892 7768 3.120854 CGCTCTACACTGAAAGCAACTTC 60.121 47.826 0.00 0.00 37.60 3.01
5893 7769 2.802816 CGCTCTACACTGAAAGCAACTT 59.197 45.455 0.00 0.00 37.60 2.66
5894 7770 2.224066 ACGCTCTACACTGAAAGCAACT 60.224 45.455 0.00 0.00 37.60 3.16
5895 7771 2.135933 ACGCTCTACACTGAAAGCAAC 58.864 47.619 0.00 0.00 37.60 4.17
5896 7772 2.404215 GACGCTCTACACTGAAAGCAA 58.596 47.619 0.00 0.00 37.60 3.91
5897 7773 2.065993 GACGCTCTACACTGAAAGCA 57.934 50.000 0.00 0.00 37.60 3.91


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.