Multiple sequence alignment - TraesCS6B01G011400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G011400 chr6B 100.000 2493 0 0 1 2493 6790975 6788483 0.000000e+00 4604.0
1 TraesCS6B01G011400 chr6D 92.828 1980 96 10 546 2492 3460820 3458854 0.000000e+00 2828.0
2 TraesCS6B01G011400 chr6D 90.840 131 5 2 22 151 3461120 3460996 4.260000e-38 169.0
3 TraesCS6B01G011400 chr6D 86.395 147 7 4 150 283 3460948 3460802 5.560000e-32 148.0
4 TraesCS6B01G011400 chr6D 75.916 191 27 18 818 999 3427324 3427144 2.060000e-11 80.5
5 TraesCS6B01G011400 chr6A 88.698 1221 75 23 669 1882 2234737 2233573 0.000000e+00 1432.0
6 TraesCS6B01G011400 chr6A 89.916 119 4 2 546 664 2244787 2244677 2.000000e-31 147.0
7 TraesCS6B01G011400 chr6A 86.957 138 5 4 159 283 2244906 2244769 2.580000e-30 143.0
8 TraesCS6B01G011400 chr7B 91.489 282 21 3 280 559 704665669 704665389 3.890000e-103 385.0
9 TraesCS6B01G011400 chr7B 90.141 284 25 3 278 559 650119027 650119309 1.410000e-97 366.0
10 TraesCS6B01G011400 chr1B 91.103 281 21 4 281 559 683992175 683991897 6.510000e-101 377.0
11 TraesCS6B01G011400 chr2A 91.273 275 21 3 277 550 51641249 51641521 3.030000e-99 372.0
12 TraesCS6B01G011400 chr5A 90.459 283 24 3 278 560 697599083 697598804 1.090000e-98 370.0
13 TraesCS6B01G011400 chr2D 90.681 279 23 3 282 559 618294777 618294501 3.920000e-98 368.0
14 TraesCS6B01G011400 chr2B 91.176 272 23 1 280 550 462408759 462409030 3.920000e-98 368.0
15 TraesCS6B01G011400 chr1D 91.176 272 22 2 279 550 83162932 83163201 3.920000e-98 368.0
16 TraesCS6B01G011400 chr5B 90.391 281 23 4 281 559 594098013 594097735 1.410000e-97 366.0
17 TraesCS6B01G011400 chr4D 83.673 98 13 3 2286 2380 468702341 468702244 3.420000e-14 89.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G011400 chr6B 6788483 6790975 2492 True 4604.000000 4604 100.000 1 2493 1 chr6B.!!$R1 2492
1 TraesCS6B01G011400 chr6D 3458854 3461120 2266 True 1048.333333 2828 90.021 22 2492 3 chr6D.!!$R2 2470
2 TraesCS6B01G011400 chr6A 2233573 2234737 1164 True 1432.000000 1432 88.698 669 1882 1 chr6A.!!$R1 1213

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
383 446 0.032515 TCCCTATGAGCACCTCCGAA 60.033 55.0 0.0 0.0 0.0 4.3 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2355 2462 0.539986 TACGGACAAGCCTTGGATCC 59.46 55.0 9.64 4.2 34.12 3.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
61 62 1.001068 TGTGCAAGGCATGGTGAAATG 59.999 47.619 0.00 0.00 41.91 2.32
66 67 3.372822 GCAAGGCATGGTGAAATGAAATG 59.627 43.478 0.00 0.00 0.00 2.32
103 104 0.689412 GGGACAAGGAGGAGGAGGAG 60.689 65.000 0.00 0.00 0.00 3.69
104 105 0.689412 GGACAAGGAGGAGGAGGAGG 60.689 65.000 0.00 0.00 0.00 4.30
105 106 0.336737 GACAAGGAGGAGGAGGAGGA 59.663 60.000 0.00 0.00 0.00 3.71
106 107 0.338120 ACAAGGAGGAGGAGGAGGAG 59.662 60.000 0.00 0.00 0.00 3.69
107 108 0.398381 CAAGGAGGAGGAGGAGGAGG 60.398 65.000 0.00 0.00 0.00 4.30
108 109 0.556380 AAGGAGGAGGAGGAGGAGGA 60.556 60.000 0.00 0.00 0.00 3.71
109 110 0.556380 AGGAGGAGGAGGAGGAGGAA 60.556 60.000 0.00 0.00 0.00 3.36
110 111 0.397957 GGAGGAGGAGGAGGAGGAAC 60.398 65.000 0.00 0.00 0.00 3.62
156 206 2.648059 CCCTCCATGATTGAACAGGAC 58.352 52.381 0.00 0.00 0.00 3.85
163 213 2.778299 TGATTGAACAGGACCCTTTCG 58.222 47.619 0.00 0.00 0.00 3.46
167 217 0.321996 GAACAGGACCCTTTCGCTCT 59.678 55.000 0.00 0.00 0.00 4.09
218 268 8.254508 ACACTAGACAAGGAGATAATTCAACTC 58.745 37.037 0.00 0.00 0.00 3.01
219 269 8.474025 CACTAGACAAGGAGATAATTCAACTCT 58.526 37.037 0.00 0.00 0.00 3.24
221 271 9.883142 CTAGACAAGGAGATAATTCAACTCTTT 57.117 33.333 0.00 0.00 31.89 2.52
261 324 1.586422 CCGCGTCATCATGGAAATCT 58.414 50.000 4.92 0.00 0.00 2.40
262 325 2.754472 CCGCGTCATCATGGAAATCTA 58.246 47.619 4.92 0.00 0.00 1.98
264 327 3.552890 CCGCGTCATCATGGAAATCTAGA 60.553 47.826 4.92 0.00 0.00 2.43
265 328 3.426859 CGCGTCATCATGGAAATCTAGAC 59.573 47.826 0.00 0.00 0.00 2.59
266 329 3.743396 GCGTCATCATGGAAATCTAGACC 59.257 47.826 0.00 0.00 0.00 3.85
267 330 4.740634 GCGTCATCATGGAAATCTAGACCA 60.741 45.833 3.22 3.22 38.09 4.02
268 331 4.747108 CGTCATCATGGAAATCTAGACCAC 59.253 45.833 2.81 0.00 36.49 4.16
269 332 5.452496 CGTCATCATGGAAATCTAGACCACT 60.452 44.000 2.81 0.00 36.49 4.00
270 333 6.352516 GTCATCATGGAAATCTAGACCACTT 58.647 40.000 2.81 0.00 36.49 3.16
271 334 6.259608 GTCATCATGGAAATCTAGACCACTTG 59.740 42.308 2.81 0.03 36.49 3.16
272 335 5.762179 TCATGGAAATCTAGACCACTTGT 57.238 39.130 2.81 0.00 36.49 3.16
273 336 5.734720 TCATGGAAATCTAGACCACTTGTC 58.265 41.667 2.81 0.00 44.82 3.18
274 337 4.553330 TGGAAATCTAGACCACTTGTCC 57.447 45.455 0.00 0.00 45.68 4.02
275 338 4.168101 TGGAAATCTAGACCACTTGTCCT 58.832 43.478 0.00 0.00 45.68 3.85
276 339 4.223032 TGGAAATCTAGACCACTTGTCCTC 59.777 45.833 0.00 0.00 45.68 3.71
277 340 4.468153 GGAAATCTAGACCACTTGTCCTCT 59.532 45.833 0.00 0.00 45.68 3.69
278 341 5.046231 GGAAATCTAGACCACTTGTCCTCTT 60.046 44.000 0.00 0.00 45.68 2.85
279 342 5.669164 AATCTAGACCACTTGTCCTCTTC 57.331 43.478 0.00 0.00 45.68 2.87
280 343 4.390129 TCTAGACCACTTGTCCTCTTCT 57.610 45.455 0.00 0.00 45.68 2.85
281 344 4.742012 TCTAGACCACTTGTCCTCTTCTT 58.258 43.478 0.00 0.00 45.68 2.52
282 345 5.148502 TCTAGACCACTTGTCCTCTTCTTT 58.851 41.667 0.00 0.00 45.68 2.52
283 346 4.779993 AGACCACTTGTCCTCTTCTTTT 57.220 40.909 0.00 0.00 45.68 2.27
284 347 5.117406 AGACCACTTGTCCTCTTCTTTTT 57.883 39.130 0.00 0.00 45.68 1.94
285 348 6.248569 AGACCACTTGTCCTCTTCTTTTTA 57.751 37.500 0.00 0.00 45.68 1.52
286 349 6.842676 AGACCACTTGTCCTCTTCTTTTTAT 58.157 36.000 0.00 0.00 45.68 1.40
287 350 7.290813 AGACCACTTGTCCTCTTCTTTTTATT 58.709 34.615 0.00 0.00 45.68 1.40
288 351 7.780271 AGACCACTTGTCCTCTTCTTTTTATTT 59.220 33.333 0.00 0.00 45.68 1.40
289 352 7.716612 ACCACTTGTCCTCTTCTTTTTATTTG 58.283 34.615 0.00 0.00 0.00 2.32
290 353 7.559897 ACCACTTGTCCTCTTCTTTTTATTTGA 59.440 33.333 0.00 0.00 0.00 2.69
291 354 8.413229 CCACTTGTCCTCTTCTTTTTATTTGAA 58.587 33.333 0.00 0.00 0.00 2.69
292 355 9.237846 CACTTGTCCTCTTCTTTTTATTTGAAC 57.762 33.333 0.00 0.00 0.00 3.18
293 356 8.966868 ACTTGTCCTCTTCTTTTTATTTGAACA 58.033 29.630 0.00 0.00 0.00 3.18
294 357 9.237846 CTTGTCCTCTTCTTTTTATTTGAACAC 57.762 33.333 0.00 0.00 0.00 3.32
295 358 8.287439 TGTCCTCTTCTTTTTATTTGAACACA 57.713 30.769 0.00 0.00 0.00 3.72
296 359 8.405531 TGTCCTCTTCTTTTTATTTGAACACAG 58.594 33.333 0.00 0.00 0.00 3.66
297 360 8.406297 GTCCTCTTCTTTTTATTTGAACACAGT 58.594 33.333 0.00 0.00 0.00 3.55
298 361 9.621629 TCCTCTTCTTTTTATTTGAACACAGTA 57.378 29.630 0.00 0.00 0.00 2.74
299 362 9.665264 CCTCTTCTTTTTATTTGAACACAGTAC 57.335 33.333 0.00 0.00 0.00 2.73
306 369 9.692749 TTTTTATTTGAACACAGTACAAACACA 57.307 25.926 0.00 0.00 36.57 3.72
307 370 9.692749 TTTTATTTGAACACAGTACAAACACAA 57.307 25.926 0.00 0.00 36.57 3.33
308 371 8.903570 TTATTTGAACACAGTACAAACACAAG 57.096 30.769 0.00 0.00 36.57 3.16
309 372 5.950758 TTGAACACAGTACAAACACAAGT 57.049 34.783 0.00 0.00 0.00 3.16
310 373 7.436430 TTTGAACACAGTACAAACACAAGTA 57.564 32.000 0.00 0.00 0.00 2.24
311 374 6.411630 TGAACACAGTACAAACACAAGTAC 57.588 37.500 0.00 0.00 40.60 2.73
313 376 6.651643 TGAACACAGTACAAACACAAGTACTT 59.348 34.615 1.12 1.12 46.36 2.24
314 377 7.818446 TGAACACAGTACAAACACAAGTACTTA 59.182 33.333 8.04 0.00 46.36 2.24
315 378 8.726870 AACACAGTACAAACACAAGTACTTAT 57.273 30.769 8.04 0.00 46.36 1.73
316 379 9.820725 AACACAGTACAAACACAAGTACTTATA 57.179 29.630 8.04 0.00 46.36 0.98
317 380 9.991906 ACACAGTACAAACACAAGTACTTATAT 57.008 29.630 8.04 0.00 46.36 0.86
324 387 8.918658 ACAAACACAAGTACTTATATACACGTG 58.081 33.333 15.48 15.48 36.39 4.49
325 388 7.515957 AACACAAGTACTTATATACACGTGC 57.484 36.000 17.22 0.00 34.93 5.34
326 389 6.623486 ACACAAGTACTTATATACACGTGCA 58.377 36.000 17.22 2.06 34.93 4.57
327 390 7.262772 ACACAAGTACTTATATACACGTGCAT 58.737 34.615 17.22 11.52 34.93 3.96
328 391 8.407832 ACACAAGTACTTATATACACGTGCATA 58.592 33.333 17.22 13.68 34.93 3.14
329 392 8.688184 CACAAGTACTTATATACACGTGCATAC 58.312 37.037 17.22 2.08 0.00 2.39
330 393 8.407832 ACAAGTACTTATATACACGTGCATACA 58.592 33.333 17.22 0.00 0.00 2.29
331 394 8.688184 CAAGTACTTATATACACGTGCATACAC 58.312 37.037 17.22 6.80 43.76 2.90
332 395 8.162878 AGTACTTATATACACGTGCATACACT 57.837 34.615 17.22 8.78 45.10 3.55
333 396 8.288208 AGTACTTATATACACGTGCATACACTC 58.712 37.037 17.22 3.00 45.10 3.51
334 397 7.034685 ACTTATATACACGTGCATACACTCA 57.965 36.000 17.22 0.00 45.10 3.41
335 398 6.916387 ACTTATATACACGTGCATACACTCAC 59.084 38.462 17.22 0.00 45.10 3.51
336 399 2.357327 TACACGTGCATACACTCACC 57.643 50.000 17.22 0.00 45.10 4.02
337 400 0.320421 ACACGTGCATACACTCACCC 60.320 55.000 17.22 0.00 45.10 4.61
338 401 0.037326 CACGTGCATACACTCACCCT 60.037 55.000 0.82 0.00 45.10 4.34
339 402 0.685097 ACGTGCATACACTCACCCTT 59.315 50.000 0.00 0.00 45.10 3.95
340 403 1.897133 ACGTGCATACACTCACCCTTA 59.103 47.619 0.00 0.00 45.10 2.69
341 404 2.500098 ACGTGCATACACTCACCCTTAT 59.500 45.455 0.00 0.00 45.10 1.73
342 405 2.866156 CGTGCATACACTCACCCTTATG 59.134 50.000 0.00 0.00 45.10 1.90
343 406 3.430236 CGTGCATACACTCACCCTTATGA 60.430 47.826 0.00 0.00 45.10 2.15
344 407 4.513442 GTGCATACACTCACCCTTATGAA 58.487 43.478 0.00 0.00 43.85 2.57
345 408 4.332819 GTGCATACACTCACCCTTATGAAC 59.667 45.833 0.00 0.00 43.85 3.18
346 409 3.555956 GCATACACTCACCCTTATGAACG 59.444 47.826 0.00 0.00 0.00 3.95
347 410 2.094762 ACACTCACCCTTATGAACGC 57.905 50.000 0.00 0.00 0.00 4.84
348 411 1.346395 ACACTCACCCTTATGAACGCA 59.654 47.619 0.00 0.00 0.00 5.24
349 412 1.732259 CACTCACCCTTATGAACGCAC 59.268 52.381 0.00 0.00 0.00 5.34
350 413 1.346395 ACTCACCCTTATGAACGCACA 59.654 47.619 0.00 0.00 0.00 4.57
351 414 1.732259 CTCACCCTTATGAACGCACAC 59.268 52.381 0.00 0.00 0.00 3.82
352 415 1.070914 TCACCCTTATGAACGCACACA 59.929 47.619 0.00 0.00 0.00 3.72
353 416 1.196808 CACCCTTATGAACGCACACAC 59.803 52.381 0.00 0.00 0.00 3.82
354 417 0.442310 CCCTTATGAACGCACACACG 59.558 55.000 0.00 0.00 39.50 4.49
355 418 0.179225 CCTTATGAACGCACACACGC 60.179 55.000 0.00 0.00 36.19 5.34
356 419 0.510790 CTTATGAACGCACACACGCA 59.489 50.000 0.00 0.00 36.19 5.24
357 420 0.233590 TTATGAACGCACACACGCAC 59.766 50.000 0.00 0.00 36.19 5.34
358 421 0.876342 TATGAACGCACACACGCACA 60.876 50.000 0.00 0.00 36.19 4.57
359 422 2.350760 GAACGCACACACGCACAC 60.351 61.111 0.00 0.00 36.19 3.82
360 423 3.783588 GAACGCACACACGCACACC 62.784 63.158 0.00 0.00 36.19 4.16
363 426 2.280524 GCACACACGCACACCCTA 60.281 61.111 0.00 0.00 0.00 3.53
364 427 1.671054 GCACACACGCACACCCTAT 60.671 57.895 0.00 0.00 0.00 2.57
365 428 1.635663 GCACACACGCACACCCTATC 61.636 60.000 0.00 0.00 0.00 2.08
366 429 1.019278 CACACACGCACACCCTATCC 61.019 60.000 0.00 0.00 0.00 2.59
367 430 1.449601 CACACGCACACCCTATCCC 60.450 63.158 0.00 0.00 0.00 3.85
368 431 1.612442 ACACGCACACCCTATCCCT 60.612 57.895 0.00 0.00 0.00 4.20
369 432 0.324923 ACACGCACACCCTATCCCTA 60.325 55.000 0.00 0.00 0.00 3.53
370 433 1.048601 CACGCACACCCTATCCCTAT 58.951 55.000 0.00 0.00 0.00 2.57
371 434 1.048601 ACGCACACCCTATCCCTATG 58.951 55.000 0.00 0.00 0.00 2.23
372 435 1.338107 CGCACACCCTATCCCTATGA 58.662 55.000 0.00 0.00 0.00 2.15
373 436 1.273606 CGCACACCCTATCCCTATGAG 59.726 57.143 0.00 0.00 0.00 2.90
374 437 1.002544 GCACACCCTATCCCTATGAGC 59.997 57.143 0.00 0.00 0.00 4.26
375 438 2.329267 CACACCCTATCCCTATGAGCA 58.671 52.381 0.00 0.00 0.00 4.26
376 439 2.037772 CACACCCTATCCCTATGAGCAC 59.962 54.545 0.00 0.00 0.00 4.40
377 440 1.625818 CACCCTATCCCTATGAGCACC 59.374 57.143 0.00 0.00 0.00 5.01
378 441 1.509961 ACCCTATCCCTATGAGCACCT 59.490 52.381 0.00 0.00 0.00 4.00
379 442 2.183679 CCCTATCCCTATGAGCACCTC 58.816 57.143 0.00 0.00 0.00 3.85
380 443 2.183679 CCTATCCCTATGAGCACCTCC 58.816 57.143 0.00 0.00 0.00 4.30
381 444 1.821753 CTATCCCTATGAGCACCTCCG 59.178 57.143 0.00 0.00 0.00 4.63
382 445 0.188587 ATCCCTATGAGCACCTCCGA 59.811 55.000 0.00 0.00 0.00 4.55
383 446 0.032515 TCCCTATGAGCACCTCCGAA 60.033 55.000 0.00 0.00 0.00 4.30
384 447 0.830648 CCCTATGAGCACCTCCGAAA 59.169 55.000 0.00 0.00 0.00 3.46
385 448 1.202580 CCCTATGAGCACCTCCGAAAG 60.203 57.143 0.00 0.00 0.00 2.62
386 449 1.757118 CCTATGAGCACCTCCGAAAGA 59.243 52.381 0.00 0.00 0.00 2.52
387 450 2.482142 CCTATGAGCACCTCCGAAAGAC 60.482 54.545 0.00 0.00 0.00 3.01
388 451 0.108615 ATGAGCACCTCCGAAAGACG 60.109 55.000 0.00 0.00 42.18 4.18
399 462 1.847818 CGAAAGACGGAACTGTCACA 58.152 50.000 14.85 0.00 41.41 3.58
400 463 2.404215 CGAAAGACGGAACTGTCACAT 58.596 47.619 14.85 2.08 41.41 3.21
401 464 2.408704 CGAAAGACGGAACTGTCACATC 59.591 50.000 14.85 9.05 41.41 3.06
402 465 3.390135 GAAAGACGGAACTGTCACATCA 58.610 45.455 14.85 0.00 41.41 3.07
403 466 3.685139 AAGACGGAACTGTCACATCAT 57.315 42.857 14.85 0.00 41.41 2.45
404 467 3.238108 AGACGGAACTGTCACATCATC 57.762 47.619 14.85 0.00 41.41 2.92
405 468 2.828520 AGACGGAACTGTCACATCATCT 59.171 45.455 14.85 0.00 41.41 2.90
406 469 3.259374 AGACGGAACTGTCACATCATCTT 59.741 43.478 14.85 0.00 41.41 2.40
407 470 3.329386 ACGGAACTGTCACATCATCTTG 58.671 45.455 0.00 0.00 0.00 3.02
408 471 3.006859 ACGGAACTGTCACATCATCTTGA 59.993 43.478 0.00 0.00 0.00 3.02
409 472 3.996363 CGGAACTGTCACATCATCTTGAA 59.004 43.478 0.00 0.00 0.00 2.69
410 473 4.452114 CGGAACTGTCACATCATCTTGAAA 59.548 41.667 0.00 0.00 0.00 2.69
411 474 5.122869 CGGAACTGTCACATCATCTTGAAAT 59.877 40.000 0.00 0.00 0.00 2.17
412 475 6.348786 CGGAACTGTCACATCATCTTGAAATT 60.349 38.462 0.00 0.00 0.00 1.82
413 476 7.373493 GGAACTGTCACATCATCTTGAAATTT 58.627 34.615 0.00 0.00 0.00 1.82
414 477 8.514594 GGAACTGTCACATCATCTTGAAATTTA 58.485 33.333 0.00 0.00 0.00 1.40
415 478 9.334693 GAACTGTCACATCATCTTGAAATTTAC 57.665 33.333 0.00 0.00 0.00 2.01
416 479 7.521529 ACTGTCACATCATCTTGAAATTTACG 58.478 34.615 0.00 0.00 0.00 3.18
417 480 7.387673 ACTGTCACATCATCTTGAAATTTACGA 59.612 33.333 0.00 0.00 0.00 3.43
418 481 8.093659 TGTCACATCATCTTGAAATTTACGAA 57.906 30.769 0.00 0.00 0.00 3.85
419 482 8.229811 TGTCACATCATCTTGAAATTTACGAAG 58.770 33.333 0.00 0.00 0.00 3.79
421 484 8.443160 TCACATCATCTTGAAATTTACGAAGTC 58.557 33.333 0.00 0.00 43.93 3.01
422 485 8.229811 CACATCATCTTGAAATTTACGAAGTCA 58.770 33.333 0.00 0.00 43.93 3.41
423 486 8.950210 ACATCATCTTGAAATTTACGAAGTCAT 58.050 29.630 0.00 0.00 43.93 3.06
424 487 9.430838 CATCATCTTGAAATTTACGAAGTCATC 57.569 33.333 0.00 0.00 43.93 2.92
425 488 8.546597 TCATCTTGAAATTTACGAAGTCATCA 57.453 30.769 0.00 0.00 43.93 3.07
426 489 9.166173 TCATCTTGAAATTTACGAAGTCATCAT 57.834 29.630 0.00 0.00 43.93 2.45
429 492 9.098355 TCTTGAAATTTACGAAGTCATCATAGG 57.902 33.333 0.00 0.00 43.93 2.57
430 493 7.246674 TGAAATTTACGAAGTCATCATAGGC 57.753 36.000 0.00 0.00 43.93 3.93
431 494 6.821160 TGAAATTTACGAAGTCATCATAGGCA 59.179 34.615 0.00 0.00 43.93 4.75
432 495 6.604735 AATTTACGAAGTCATCATAGGCAC 57.395 37.500 0.00 0.00 43.93 5.01
433 496 2.604046 ACGAAGTCATCATAGGCACC 57.396 50.000 0.00 0.00 29.74 5.01
434 497 2.111384 ACGAAGTCATCATAGGCACCT 58.889 47.619 0.00 0.00 29.74 4.00
435 498 2.101582 ACGAAGTCATCATAGGCACCTC 59.898 50.000 0.00 0.00 29.74 3.85
436 499 2.748605 GAAGTCATCATAGGCACCTCG 58.251 52.381 0.00 0.00 0.00 4.63
437 500 1.781786 AGTCATCATAGGCACCTCGT 58.218 50.000 0.00 0.00 0.00 4.18
438 501 1.683917 AGTCATCATAGGCACCTCGTC 59.316 52.381 0.00 0.00 0.00 4.20
439 502 0.668535 TCATCATAGGCACCTCGTCG 59.331 55.000 0.00 0.00 0.00 5.12
440 503 0.385751 CATCATAGGCACCTCGTCGT 59.614 55.000 0.00 0.00 0.00 4.34
441 504 0.669077 ATCATAGGCACCTCGTCGTC 59.331 55.000 0.00 0.00 0.00 4.20
442 505 1.298413 CATAGGCACCTCGTCGTCG 60.298 63.158 0.00 0.00 38.55 5.12
443 506 1.450848 ATAGGCACCTCGTCGTCGA 60.451 57.895 4.42 4.42 44.12 4.20
444 507 1.712977 ATAGGCACCTCGTCGTCGAC 61.713 60.000 15.51 15.51 41.35 4.20
463 526 4.115270 GGAACGTCTCCTCCCACT 57.885 61.111 8.87 0.00 41.61 4.00
464 527 1.592223 GGAACGTCTCCTCCCACTG 59.408 63.158 8.87 0.00 41.61 3.66
465 528 0.898789 GGAACGTCTCCTCCCACTGA 60.899 60.000 8.87 0.00 41.61 3.41
466 529 0.966920 GAACGTCTCCTCCCACTGAA 59.033 55.000 0.00 0.00 0.00 3.02
467 530 1.550976 GAACGTCTCCTCCCACTGAAT 59.449 52.381 0.00 0.00 0.00 2.57
468 531 0.898320 ACGTCTCCTCCCACTGAATG 59.102 55.000 0.00 0.00 0.00 2.67
469 532 0.460987 CGTCTCCTCCCACTGAATGC 60.461 60.000 0.00 0.00 0.00 3.56
470 533 0.615331 GTCTCCTCCCACTGAATGCA 59.385 55.000 0.00 0.00 0.00 3.96
471 534 0.615331 TCTCCTCCCACTGAATGCAC 59.385 55.000 0.00 0.00 0.00 4.57
472 535 0.325933 CTCCTCCCACTGAATGCACA 59.674 55.000 0.00 0.00 0.00 4.57
473 536 0.994247 TCCTCCCACTGAATGCACAT 59.006 50.000 0.00 0.00 0.00 3.21
474 537 1.065199 TCCTCCCACTGAATGCACATC 60.065 52.381 0.00 0.00 0.00 3.06
475 538 1.012086 CTCCCACTGAATGCACATCG 58.988 55.000 0.00 0.00 0.00 3.84
476 539 0.324614 TCCCACTGAATGCACATCGT 59.675 50.000 0.00 0.00 0.00 3.73
477 540 0.729116 CCCACTGAATGCACATCGTC 59.271 55.000 0.00 0.00 0.00 4.20
478 541 0.371301 CCACTGAATGCACATCGTCG 59.629 55.000 0.00 0.00 0.00 5.12
479 542 0.371301 CACTGAATGCACATCGTCGG 59.629 55.000 0.00 0.00 0.00 4.79
480 543 0.246360 ACTGAATGCACATCGTCGGA 59.754 50.000 0.00 0.00 0.00 4.55
481 544 1.337728 ACTGAATGCACATCGTCGGAA 60.338 47.619 0.00 0.00 0.00 4.30
482 545 1.731709 CTGAATGCACATCGTCGGAAA 59.268 47.619 0.00 0.00 0.00 3.13
483 546 2.352651 CTGAATGCACATCGTCGGAAAT 59.647 45.455 0.00 0.00 0.00 2.17
484 547 2.351418 TGAATGCACATCGTCGGAAATC 59.649 45.455 0.00 0.00 0.00 2.17
485 548 1.299541 ATGCACATCGTCGGAAATCC 58.700 50.000 0.00 0.00 0.00 3.01
486 549 0.249120 TGCACATCGTCGGAAATCCT 59.751 50.000 0.00 0.00 0.00 3.24
487 550 0.652592 GCACATCGTCGGAAATCCTG 59.347 55.000 0.00 0.00 0.00 3.86
488 551 1.739035 GCACATCGTCGGAAATCCTGA 60.739 52.381 0.00 0.00 0.00 3.86
489 552 2.616960 CACATCGTCGGAAATCCTGAA 58.383 47.619 0.00 0.00 0.00 3.02
490 553 3.000041 CACATCGTCGGAAATCCTGAAA 59.000 45.455 0.00 0.00 0.00 2.69
491 554 3.623060 CACATCGTCGGAAATCCTGAAAT 59.377 43.478 0.00 0.00 0.00 2.17
492 555 4.808895 CACATCGTCGGAAATCCTGAAATA 59.191 41.667 0.00 0.00 0.00 1.40
493 556 5.293324 CACATCGTCGGAAATCCTGAAATAA 59.707 40.000 0.00 0.00 0.00 1.40
494 557 5.878116 ACATCGTCGGAAATCCTGAAATAAA 59.122 36.000 0.00 0.00 0.00 1.40
495 558 6.542370 ACATCGTCGGAAATCCTGAAATAAAT 59.458 34.615 0.00 0.00 0.00 1.40
496 559 6.598753 TCGTCGGAAATCCTGAAATAAATC 57.401 37.500 0.00 0.00 0.00 2.17
497 560 5.526111 TCGTCGGAAATCCTGAAATAAATCC 59.474 40.000 0.00 0.00 0.00 3.01
498 561 5.295787 CGTCGGAAATCCTGAAATAAATCCA 59.704 40.000 0.00 0.00 0.00 3.41
499 562 6.511767 CGTCGGAAATCCTGAAATAAATCCAG 60.512 42.308 0.00 0.00 0.00 3.86
500 563 5.827797 TCGGAAATCCTGAAATAAATCCAGG 59.172 40.000 0.00 0.00 46.64 4.45
513 576 9.827411 GAAATAAATCCAGGAATAAATACGAGC 57.173 33.333 0.00 0.00 0.00 5.03
514 577 8.918202 AATAAATCCAGGAATAAATACGAGCA 57.082 30.769 0.00 0.00 0.00 4.26
515 578 6.619801 AAATCCAGGAATAAATACGAGCAC 57.380 37.500 0.00 0.00 0.00 4.40
516 579 4.067972 TCCAGGAATAAATACGAGCACC 57.932 45.455 0.00 0.00 0.00 5.01
517 580 3.452990 TCCAGGAATAAATACGAGCACCA 59.547 43.478 0.00 0.00 0.00 4.17
518 581 3.809832 CCAGGAATAAATACGAGCACCAG 59.190 47.826 0.00 0.00 0.00 4.00
519 582 3.809832 CAGGAATAAATACGAGCACCAGG 59.190 47.826 0.00 0.00 0.00 4.45
520 583 3.709653 AGGAATAAATACGAGCACCAGGA 59.290 43.478 0.00 0.00 0.00 3.86
521 584 4.348168 AGGAATAAATACGAGCACCAGGAT 59.652 41.667 0.00 0.00 0.00 3.24
522 585 5.063880 GGAATAAATACGAGCACCAGGATT 58.936 41.667 0.00 0.00 0.00 3.01
523 586 5.531287 GGAATAAATACGAGCACCAGGATTT 59.469 40.000 0.00 0.00 0.00 2.17
524 587 6.377327 AATAAATACGAGCACCAGGATTTG 57.623 37.500 0.00 0.00 0.00 2.32
525 588 3.627395 AATACGAGCACCAGGATTTGA 57.373 42.857 0.00 0.00 0.00 2.69
526 589 3.627395 ATACGAGCACCAGGATTTGAA 57.373 42.857 0.00 0.00 0.00 2.69
527 590 1.523758 ACGAGCACCAGGATTTGAAC 58.476 50.000 0.00 0.00 0.00 3.18
528 591 1.072331 ACGAGCACCAGGATTTGAACT 59.928 47.619 0.00 0.00 0.00 3.01
529 592 1.734465 CGAGCACCAGGATTTGAACTC 59.266 52.381 0.00 0.00 0.00 3.01
530 593 2.613977 CGAGCACCAGGATTTGAACTCT 60.614 50.000 0.00 0.00 0.00 3.24
531 594 2.746362 GAGCACCAGGATTTGAACTCTG 59.254 50.000 0.00 0.00 0.00 3.35
535 598 2.440409 CCAGGATTTGAACTCTGGTGG 58.560 52.381 0.00 0.00 41.21 4.61
536 599 2.440409 CAGGATTTGAACTCTGGTGGG 58.560 52.381 0.00 0.00 0.00 4.61
537 600 1.177401 GGATTTGAACTCTGGTGGGC 58.823 55.000 0.00 0.00 0.00 5.36
538 601 1.272147 GGATTTGAACTCTGGTGGGCT 60.272 52.381 0.00 0.00 0.00 5.19
539 602 1.815003 GATTTGAACTCTGGTGGGCTG 59.185 52.381 0.00 0.00 0.00 4.85
540 603 0.178992 TTTGAACTCTGGTGGGCTGG 60.179 55.000 0.00 0.00 0.00 4.85
541 604 2.067932 TTGAACTCTGGTGGGCTGGG 62.068 60.000 0.00 0.00 0.00 4.45
542 605 3.927481 GAACTCTGGTGGGCTGGGC 62.927 68.421 0.00 0.00 0.00 5.36
544 607 3.736224 CTCTGGTGGGCTGGGCAT 61.736 66.667 0.00 0.00 0.00 4.40
628 691 4.159266 CCAGATCATGGCTGGCTG 57.841 61.111 18.44 7.95 45.66 4.85
632 695 1.455217 GATCATGGCTGGCTGGCTT 60.455 57.895 18.27 9.78 42.34 4.35
633 696 1.735376 GATCATGGCTGGCTGGCTTG 61.735 60.000 21.71 21.71 44.24 4.01
634 697 2.509931 ATCATGGCTGGCTGGCTTGT 62.510 55.000 24.76 14.40 43.63 3.16
636 699 0.754217 CATGGCTGGCTGGCTTGTAT 60.754 55.000 20.21 4.59 40.12 2.29
644 707 3.413327 TGGCTGGCTTGTATTTTCGTAA 58.587 40.909 2.00 0.00 0.00 3.18
653 716 8.350722 TGGCTTGTATTTTCGTAACAACAATAA 58.649 29.630 2.83 0.00 0.00 1.40
810 874 1.569653 AAGGTAGGCGACTTTAGGCT 58.430 50.000 0.00 0.00 46.54 4.58
814 878 2.029200 GGTAGGCGACTTTAGGCTATCC 60.029 54.545 0.00 3.57 46.11 2.59
857 921 1.134936 CGGGTGTGATATGTTCGACCA 60.135 52.381 0.00 0.00 33.15 4.02
865 929 3.386402 TGATATGTTCGACCACTGCCATA 59.614 43.478 0.00 0.00 0.00 2.74
919 983 1.153086 GCGCCTGTCCTTCCATCAT 60.153 57.895 0.00 0.00 0.00 2.45
1014 1078 0.250467 CATAGATGGGTTCCCTGCGG 60.250 60.000 9.43 0.00 0.00 5.69
1163 1227 1.294138 GCAACGTGCCCTACTACCA 59.706 57.895 0.00 0.00 37.42 3.25
1167 1231 0.251474 ACGTGCCCTACTACCACTCA 60.251 55.000 0.00 0.00 0.00 3.41
1218 1282 1.006102 CTTCGTCGACCAGGTTGCT 60.006 57.895 10.58 0.00 0.00 3.91
1230 1294 2.666190 GTTGCTGCGCTCCACTCA 60.666 61.111 9.73 0.00 0.00 3.41
1393 1460 6.871844 TGAGATGTGAATGTTTTGGTTTTCA 58.128 32.000 0.00 0.00 0.00 2.69
1406 1473 1.691434 GGTTTTCATTGCAGGGGTTCA 59.309 47.619 0.00 0.00 0.00 3.18
1407 1474 2.302733 GGTTTTCATTGCAGGGGTTCAT 59.697 45.455 0.00 0.00 0.00 2.57
1465 1532 2.565834 GCTCAAGAGTACCAGTTACCCA 59.434 50.000 0.00 0.00 0.00 4.51
1471 1538 0.035725 GTACCAGTTACCCACAGCCC 60.036 60.000 0.00 0.00 0.00 5.19
1515 1582 7.114095 TGATCCATCAATTGATTCTTGTGAGA 58.886 34.615 18.41 7.85 33.08 3.27
1516 1583 6.997239 TCCATCAATTGATTCTTGTGAGAG 57.003 37.500 18.41 3.44 32.44 3.20
1518 1585 6.944290 TCCATCAATTGATTCTTGTGAGAGTT 59.056 34.615 18.41 0.00 32.44 3.01
1519 1586 7.449395 TCCATCAATTGATTCTTGTGAGAGTTT 59.551 33.333 18.41 0.00 32.44 2.66
1520 1587 7.754027 CCATCAATTGATTCTTGTGAGAGTTTC 59.246 37.037 18.41 0.00 32.44 2.78
1565 1632 7.241663 TGTTTGTGTACTGTGTTTCTATCAC 57.758 36.000 0.00 0.00 36.48 3.06
1567 1634 4.890088 TGTGTACTGTGTTTCTATCACCC 58.110 43.478 0.00 0.00 35.25 4.61
1568 1635 4.591498 TGTGTACTGTGTTTCTATCACCCT 59.409 41.667 0.00 0.00 35.25 4.34
1569 1636 5.071250 TGTGTACTGTGTTTCTATCACCCTT 59.929 40.000 0.00 0.00 35.25 3.95
1570 1637 5.638234 GTGTACTGTGTTTCTATCACCCTTC 59.362 44.000 0.00 0.00 35.25 3.46
1571 1638 3.926616 ACTGTGTTTCTATCACCCTTCG 58.073 45.455 0.00 0.00 35.25 3.79
1572 1639 3.323979 ACTGTGTTTCTATCACCCTTCGT 59.676 43.478 0.00 0.00 35.25 3.85
1577 1644 4.527038 TGTTTCTATCACCCTTCGTCTTCT 59.473 41.667 0.00 0.00 0.00 2.85
1633 1712 1.220206 CTTCAGCTGAGGCGGACAT 59.780 57.895 17.43 0.00 41.89 3.06
1644 1724 1.843851 AGGCGGACATCTGGGATTTAA 59.156 47.619 0.00 0.00 0.00 1.52
1648 1728 4.215613 GGCGGACATCTGGGATTTAATTAC 59.784 45.833 0.00 0.00 0.00 1.89
1697 1777 8.640063 ATGTATGTAGGTACGTATATTGGACA 57.360 34.615 9.66 8.78 28.91 4.02
1766 1870 2.434336 ACAGCTGAGTACCTGTTTGACA 59.566 45.455 23.35 0.00 39.11 3.58
1772 1876 5.092554 TGAGTACCTGTTTGACAGTTTCA 57.907 39.130 7.26 3.22 44.50 2.69
1777 1881 2.031683 CCTGTTTGACAGTTTCACCGAC 59.968 50.000 7.26 0.00 44.50 4.79
1784 1888 1.269831 ACAGTTTCACCGACTCAGCTC 60.270 52.381 0.00 0.00 0.00 4.09
1959 2066 6.718454 AAATCACTTTCTCATCTCGACAAG 57.282 37.500 0.00 0.00 0.00 3.16
1990 2097 6.603095 ACACGCTAAAAACATGATTCTTCTC 58.397 36.000 0.00 0.00 0.00 2.87
2002 2109 9.545105 AACATGATTCTTCTCATTCAGATCTAC 57.455 33.333 0.00 0.00 33.59 2.59
2014 2121 4.456280 TCAGATCTACAATGCAGACGTT 57.544 40.909 0.00 0.00 0.00 3.99
2148 2255 6.719365 GCTATGTGCCATCAAAGTTAGTTAG 58.281 40.000 0.00 0.00 35.15 2.34
2154 2261 7.717875 TGTGCCATCAAAGTTAGTTAGTTACTT 59.282 33.333 0.00 0.00 38.33 2.24
2175 2282 3.721035 TCATCCATCACACAATAGAGCG 58.279 45.455 0.00 0.00 0.00 5.03
2197 2304 3.055891 GCATTGTTTTCCTAGGGTGCAAT 60.056 43.478 9.46 11.54 0.00 3.56
2319 2426 2.744760 TGTCCAATGGAGAGAGGAGAG 58.255 52.381 0.27 0.00 29.39 3.20
2330 2437 0.933700 AGAGGAGAGAGAAGGGAGGG 59.066 60.000 0.00 0.00 0.00 4.30
2355 2462 1.138069 GAAAAGGTGGGTTTGTGGTGG 59.862 52.381 0.00 0.00 0.00 4.61
2357 2464 1.585651 AAGGTGGGTTTGTGGTGGGA 61.586 55.000 0.00 0.00 0.00 4.37
2372 2479 1.452108 GGGATCCAAGGCTTGTCCG 60.452 63.158 24.57 10.70 40.77 4.79
2382 2489 2.736347 AGGCTTGTCCGTAGTATGTCT 58.264 47.619 0.00 0.00 40.77 3.41
2389 2496 4.701765 TGTCCGTAGTATGTCTAGACTCC 58.298 47.826 23.01 10.92 30.21 3.85
2393 2500 4.040706 CCGTAGTATGTCTAGACTCCCTCT 59.959 50.000 23.01 15.16 29.74 3.69
2403 2510 2.695585 AGACTCCCTCTGACCACTTTT 58.304 47.619 0.00 0.00 0.00 2.27
2411 2518 3.243068 CCTCTGACCACTTTTTCGTTTGG 60.243 47.826 0.00 0.00 35.06 3.28
2424 2531 6.939132 TTTTCGTTTGGTACCTATTGTTGA 57.061 33.333 14.36 0.00 0.00 3.18
2436 2543 5.783111 ACCTATTGTTGAATTCTGGTTTGC 58.217 37.500 7.05 0.00 0.00 3.68
2439 2546 1.339610 TGTTGAATTCTGGTTTGCCCG 59.660 47.619 7.05 0.00 35.15 6.13
2443 2550 2.156098 GAATTCTGGTTTGCCCGTGTA 58.844 47.619 0.00 0.00 35.15 2.90
2488 2595 1.547675 GGATGGCCAAAAGTGTCCAGA 60.548 52.381 10.96 0.00 31.36 3.86
2490 2597 0.467290 TGGCCAAAAGTGTCCAGACC 60.467 55.000 0.61 0.00 0.00 3.85
2491 2598 0.467290 GGCCAAAAGTGTCCAGACCA 60.467 55.000 0.00 0.00 0.00 4.02
2492 2599 1.620822 GCCAAAAGTGTCCAGACCAT 58.379 50.000 0.00 0.00 0.00 3.55
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 14 9.470399 ACGGTACATATTCCCTTTTATCTTTTT 57.530 29.630 0.00 0.00 0.00 1.94
16 17 9.720769 CATACGGTACATATTCCCTTTTATCTT 57.279 33.333 0.00 0.00 0.00 2.40
17 18 8.877195 ACATACGGTACATATTCCCTTTTATCT 58.123 33.333 0.00 0.00 0.00 1.98
18 19 8.932791 CACATACGGTACATATTCCCTTTTATC 58.067 37.037 0.00 0.00 0.00 1.75
19 20 7.389607 GCACATACGGTACATATTCCCTTTTAT 59.610 37.037 0.00 0.00 0.00 1.40
20 21 6.707161 GCACATACGGTACATATTCCCTTTTA 59.293 38.462 0.00 0.00 0.00 1.52
21 22 5.529800 GCACATACGGTACATATTCCCTTTT 59.470 40.000 0.00 0.00 0.00 2.27
22 23 5.061179 GCACATACGGTACATATTCCCTTT 58.939 41.667 0.00 0.00 0.00 3.11
23 24 4.101898 TGCACATACGGTACATATTCCCTT 59.898 41.667 0.00 0.00 0.00 3.95
24 25 3.644265 TGCACATACGGTACATATTCCCT 59.356 43.478 0.00 0.00 0.00 4.20
25 26 3.997762 TGCACATACGGTACATATTCCC 58.002 45.455 0.00 0.00 0.00 3.97
26 27 4.451096 CCTTGCACATACGGTACATATTCC 59.549 45.833 0.00 0.00 0.00 3.01
27 28 4.084013 GCCTTGCACATACGGTACATATTC 60.084 45.833 0.00 0.00 0.00 1.75
28 29 3.813166 GCCTTGCACATACGGTACATATT 59.187 43.478 0.00 0.00 0.00 1.28
40 41 1.340088 TTTCACCATGCCTTGCACAT 58.660 45.000 0.00 0.00 43.04 3.21
61 62 5.420104 CCCTTATCCTATTCATGGCCATTTC 59.580 44.000 17.92 0.00 0.00 2.17
66 67 2.919602 TCCCCTTATCCTATTCATGGCC 59.080 50.000 0.00 0.00 0.00 5.36
104 105 1.153349 GCATCGGTGGGAGTTCCTC 60.153 63.158 0.00 0.00 36.20 3.71
105 106 1.488705 TTGCATCGGTGGGAGTTCCT 61.489 55.000 0.00 0.00 36.20 3.36
106 107 0.394352 ATTGCATCGGTGGGAGTTCC 60.394 55.000 0.00 0.00 0.00 3.62
107 108 1.017387 GATTGCATCGGTGGGAGTTC 58.983 55.000 0.00 0.00 0.00 3.01
108 109 0.394352 GGATTGCATCGGTGGGAGTT 60.394 55.000 0.00 0.00 0.00 3.01
109 110 1.224592 GGATTGCATCGGTGGGAGT 59.775 57.895 0.00 0.00 0.00 3.85
110 111 0.107017 AAGGATTGCATCGGTGGGAG 60.107 55.000 0.00 0.00 0.00 4.30
111 112 0.331278 AAAGGATTGCATCGGTGGGA 59.669 50.000 0.00 0.00 0.00 4.37
156 206 2.959707 ACTGATAGGTAGAGCGAAAGGG 59.040 50.000 0.00 0.00 0.00 3.95
163 213 3.499157 CGTACTCCACTGATAGGTAGAGC 59.501 52.174 0.00 0.00 30.21 4.09
167 217 3.200605 TCCACGTACTCCACTGATAGGTA 59.799 47.826 0.00 0.00 0.00 3.08
261 324 5.888982 AAAAGAAGAGGACAAGTGGTCTA 57.111 39.130 0.00 0.00 46.16 2.59
262 325 4.779993 AAAAGAAGAGGACAAGTGGTCT 57.220 40.909 0.00 0.00 46.16 3.85
264 327 7.559897 TCAAATAAAAAGAAGAGGACAAGTGGT 59.440 33.333 0.00 0.00 0.00 4.16
265 328 7.940850 TCAAATAAAAAGAAGAGGACAAGTGG 58.059 34.615 0.00 0.00 0.00 4.00
266 329 9.237846 GTTCAAATAAAAAGAAGAGGACAAGTG 57.762 33.333 0.00 0.00 0.00 3.16
267 330 8.966868 TGTTCAAATAAAAAGAAGAGGACAAGT 58.033 29.630 0.00 0.00 0.00 3.16
268 331 9.237846 GTGTTCAAATAAAAAGAAGAGGACAAG 57.762 33.333 0.00 0.00 0.00 3.16
269 332 8.744652 TGTGTTCAAATAAAAAGAAGAGGACAA 58.255 29.630 0.00 0.00 0.00 3.18
270 333 8.287439 TGTGTTCAAATAAAAAGAAGAGGACA 57.713 30.769 0.00 0.00 0.00 4.02
271 334 8.406297 ACTGTGTTCAAATAAAAAGAAGAGGAC 58.594 33.333 0.00 0.00 0.00 3.85
272 335 8.519799 ACTGTGTTCAAATAAAAAGAAGAGGA 57.480 30.769 0.00 0.00 0.00 3.71
273 336 9.665264 GTACTGTGTTCAAATAAAAAGAAGAGG 57.335 33.333 0.00 0.00 0.00 3.69
280 343 9.692749 TGTGTTTGTACTGTGTTCAAATAAAAA 57.307 25.926 5.95 0.00 35.84 1.94
281 344 9.692749 TTGTGTTTGTACTGTGTTCAAATAAAA 57.307 25.926 5.95 3.15 35.84 1.52
282 345 9.347934 CTTGTGTTTGTACTGTGTTCAAATAAA 57.652 29.630 5.95 0.00 35.84 1.40
283 346 8.516234 ACTTGTGTTTGTACTGTGTTCAAATAA 58.484 29.630 5.95 3.18 35.84 1.40
284 347 8.046294 ACTTGTGTTTGTACTGTGTTCAAATA 57.954 30.769 5.95 1.81 35.84 1.40
285 348 6.919721 ACTTGTGTTTGTACTGTGTTCAAAT 58.080 32.000 5.95 0.00 35.84 2.32
286 349 6.320494 ACTTGTGTTTGTACTGTGTTCAAA 57.680 33.333 0.00 0.00 32.18 2.69
287 350 5.950758 ACTTGTGTTTGTACTGTGTTCAA 57.049 34.783 0.00 0.00 0.00 2.69
288 351 6.167685 AGTACTTGTGTTTGTACTGTGTTCA 58.832 36.000 5.19 0.00 45.05 3.18
289 352 6.657836 AGTACTTGTGTTTGTACTGTGTTC 57.342 37.500 5.19 0.00 45.05 3.18
290 353 8.726870 ATAAGTACTTGTGTTTGTACTGTGTT 57.273 30.769 18.56 0.00 45.74 3.32
291 354 9.991906 ATATAAGTACTTGTGTTTGTACTGTGT 57.008 29.630 18.56 0.00 45.74 3.72
298 361 8.918658 CACGTGTATATAAGTACTTGTGTTTGT 58.081 33.333 18.56 4.98 31.66 2.83
299 362 7.896274 GCACGTGTATATAAGTACTTGTGTTTG 59.104 37.037 18.56 4.41 35.15 2.93
300 363 7.599621 TGCACGTGTATATAAGTACTTGTGTTT 59.400 33.333 18.56 4.29 35.15 2.83
301 364 7.092079 TGCACGTGTATATAAGTACTTGTGTT 58.908 34.615 18.56 6.62 35.15 3.32
302 365 6.623486 TGCACGTGTATATAAGTACTTGTGT 58.377 36.000 18.56 12.28 35.15 3.72
303 366 7.694388 ATGCACGTGTATATAAGTACTTGTG 57.306 36.000 18.03 14.65 35.47 3.33
304 367 8.407832 TGTATGCACGTGTATATAAGTACTTGT 58.592 33.333 25.81 14.13 0.00 3.16
305 368 8.688184 GTGTATGCACGTGTATATAAGTACTTG 58.312 37.037 25.81 1.15 35.75 3.16
306 369 8.792831 GTGTATGCACGTGTATATAAGTACTT 57.207 34.615 25.81 13.68 35.75 2.24
322 385 4.137116 TCATAAGGGTGAGTGTATGCAC 57.863 45.455 5.71 5.71 45.57 4.57
323 386 4.513442 GTTCATAAGGGTGAGTGTATGCA 58.487 43.478 0.00 0.00 0.00 3.96
324 387 3.555956 CGTTCATAAGGGTGAGTGTATGC 59.444 47.826 0.00 0.00 0.00 3.14
325 388 3.555956 GCGTTCATAAGGGTGAGTGTATG 59.444 47.826 0.00 0.00 0.00 2.39
326 389 3.196901 TGCGTTCATAAGGGTGAGTGTAT 59.803 43.478 0.00 0.00 0.00 2.29
327 390 2.563620 TGCGTTCATAAGGGTGAGTGTA 59.436 45.455 0.00 0.00 0.00 2.90
328 391 1.346395 TGCGTTCATAAGGGTGAGTGT 59.654 47.619 0.00 0.00 0.00 3.55
329 392 1.732259 GTGCGTTCATAAGGGTGAGTG 59.268 52.381 0.00 0.00 0.00 3.51
330 393 1.346395 TGTGCGTTCATAAGGGTGAGT 59.654 47.619 0.00 0.00 0.00 3.41
331 394 1.732259 GTGTGCGTTCATAAGGGTGAG 59.268 52.381 0.00 0.00 0.00 3.51
332 395 1.070914 TGTGTGCGTTCATAAGGGTGA 59.929 47.619 0.00 0.00 0.00 4.02
333 396 1.196808 GTGTGTGCGTTCATAAGGGTG 59.803 52.381 0.00 0.00 0.00 4.61
334 397 1.519408 GTGTGTGCGTTCATAAGGGT 58.481 50.000 0.00 0.00 0.00 4.34
335 398 0.442310 CGTGTGTGCGTTCATAAGGG 59.558 55.000 0.00 0.00 0.00 3.95
336 399 0.179225 GCGTGTGTGCGTTCATAAGG 60.179 55.000 0.00 0.00 0.00 2.69
337 400 0.510790 TGCGTGTGTGCGTTCATAAG 59.489 50.000 0.00 0.00 37.81 1.73
338 401 0.233590 GTGCGTGTGTGCGTTCATAA 59.766 50.000 0.00 0.00 37.81 1.90
339 402 0.876342 TGTGCGTGTGTGCGTTCATA 60.876 50.000 0.00 0.00 37.81 2.15
340 403 2.176926 TGTGCGTGTGTGCGTTCAT 61.177 52.632 0.00 0.00 37.81 2.57
341 404 2.815647 TGTGCGTGTGTGCGTTCA 60.816 55.556 0.00 0.00 37.81 3.18
342 405 2.350760 GTGTGCGTGTGTGCGTTC 60.351 61.111 0.00 0.00 37.81 3.95
343 406 3.871574 GGTGTGCGTGTGTGCGTT 61.872 61.111 0.00 0.00 37.81 4.84
346 409 1.635663 GATAGGGTGTGCGTGTGTGC 61.636 60.000 0.00 0.00 0.00 4.57
347 410 1.019278 GGATAGGGTGTGCGTGTGTG 61.019 60.000 0.00 0.00 0.00 3.82
348 411 1.295423 GGATAGGGTGTGCGTGTGT 59.705 57.895 0.00 0.00 0.00 3.72
349 412 1.449601 GGGATAGGGTGTGCGTGTG 60.450 63.158 0.00 0.00 0.00 3.82
350 413 0.324923 TAGGGATAGGGTGTGCGTGT 60.325 55.000 0.00 0.00 0.00 4.49
351 414 1.048601 ATAGGGATAGGGTGTGCGTG 58.951 55.000 0.00 0.00 0.00 5.34
352 415 1.048601 CATAGGGATAGGGTGTGCGT 58.951 55.000 0.00 0.00 0.00 5.24
353 416 1.273606 CTCATAGGGATAGGGTGTGCG 59.726 57.143 0.00 0.00 0.00 5.34
354 417 1.002544 GCTCATAGGGATAGGGTGTGC 59.997 57.143 0.00 0.00 0.00 4.57
355 418 2.037772 GTGCTCATAGGGATAGGGTGTG 59.962 54.545 0.00 0.00 0.00 3.82
356 419 2.330216 GTGCTCATAGGGATAGGGTGT 58.670 52.381 0.00 0.00 0.00 4.16
357 420 1.625818 GGTGCTCATAGGGATAGGGTG 59.374 57.143 0.00 0.00 0.00 4.61
358 421 1.509961 AGGTGCTCATAGGGATAGGGT 59.490 52.381 0.00 0.00 0.00 4.34
359 422 2.183679 GAGGTGCTCATAGGGATAGGG 58.816 57.143 0.00 0.00 0.00 3.53
360 423 2.183679 GGAGGTGCTCATAGGGATAGG 58.816 57.143 0.00 0.00 31.08 2.57
361 424 1.821753 CGGAGGTGCTCATAGGGATAG 59.178 57.143 0.00 0.00 31.08 2.08
362 425 1.427753 TCGGAGGTGCTCATAGGGATA 59.572 52.381 0.00 0.00 31.08 2.59
363 426 0.188587 TCGGAGGTGCTCATAGGGAT 59.811 55.000 0.00 0.00 31.08 3.85
364 427 0.032515 TTCGGAGGTGCTCATAGGGA 60.033 55.000 0.00 0.00 31.08 4.20
365 428 0.830648 TTTCGGAGGTGCTCATAGGG 59.169 55.000 0.00 0.00 31.08 3.53
366 429 1.757118 TCTTTCGGAGGTGCTCATAGG 59.243 52.381 0.00 0.00 31.08 2.57
367 430 2.796383 CGTCTTTCGGAGGTGCTCATAG 60.796 54.545 0.00 0.00 35.71 2.23
368 431 1.134367 CGTCTTTCGGAGGTGCTCATA 59.866 52.381 0.00 0.00 35.71 2.15
369 432 0.108615 CGTCTTTCGGAGGTGCTCAT 60.109 55.000 0.00 0.00 35.71 2.90
370 433 1.289066 CGTCTTTCGGAGGTGCTCA 59.711 57.895 0.00 0.00 35.71 4.26
371 434 4.170723 CGTCTTTCGGAGGTGCTC 57.829 61.111 0.00 0.00 35.71 4.26
380 443 1.847818 TGTGACAGTTCCGTCTTTCG 58.152 50.000 0.00 0.00 36.82 3.46
381 444 3.390135 TGATGTGACAGTTCCGTCTTTC 58.610 45.455 0.00 0.00 36.82 2.62
382 445 3.469008 TGATGTGACAGTTCCGTCTTT 57.531 42.857 0.00 0.00 36.82 2.52
383 446 3.259374 AGATGATGTGACAGTTCCGTCTT 59.741 43.478 0.00 0.00 36.82 3.01
384 447 2.828520 AGATGATGTGACAGTTCCGTCT 59.171 45.455 0.00 0.00 36.82 4.18
385 448 3.238108 AGATGATGTGACAGTTCCGTC 57.762 47.619 0.00 0.00 36.40 4.79
386 449 3.006859 TCAAGATGATGTGACAGTTCCGT 59.993 43.478 0.00 0.00 0.00 4.69
387 450 3.588955 TCAAGATGATGTGACAGTTCCG 58.411 45.455 0.00 0.00 0.00 4.30
388 451 5.947228 TTTCAAGATGATGTGACAGTTCC 57.053 39.130 0.00 0.00 0.00 3.62
389 452 9.334693 GTAAATTTCAAGATGATGTGACAGTTC 57.665 33.333 0.00 0.00 0.00 3.01
390 453 8.017373 CGTAAATTTCAAGATGATGTGACAGTT 58.983 33.333 0.00 0.00 0.00 3.16
391 454 7.387673 TCGTAAATTTCAAGATGATGTGACAGT 59.612 33.333 0.00 0.00 0.00 3.55
392 455 7.742151 TCGTAAATTTCAAGATGATGTGACAG 58.258 34.615 0.00 0.00 0.00 3.51
393 456 7.665561 TCGTAAATTTCAAGATGATGTGACA 57.334 32.000 0.00 0.00 0.00 3.58
394 457 8.230486 ACTTCGTAAATTTCAAGATGATGTGAC 58.770 33.333 0.00 0.00 0.00 3.67
395 458 8.322906 ACTTCGTAAATTTCAAGATGATGTGA 57.677 30.769 0.00 0.00 0.00 3.58
396 459 8.229811 TGACTTCGTAAATTTCAAGATGATGTG 58.770 33.333 0.00 0.00 0.00 3.21
397 460 8.322906 TGACTTCGTAAATTTCAAGATGATGT 57.677 30.769 0.00 0.00 0.00 3.06
398 461 9.430838 GATGACTTCGTAAATTTCAAGATGATG 57.569 33.333 0.00 0.00 0.00 3.07
399 462 9.166173 TGATGACTTCGTAAATTTCAAGATGAT 57.834 29.630 0.00 0.00 0.00 2.45
400 463 8.546597 TGATGACTTCGTAAATTTCAAGATGA 57.453 30.769 0.00 0.00 0.00 2.92
403 466 9.098355 CCTATGATGACTTCGTAAATTTCAAGA 57.902 33.333 0.00 0.00 0.00 3.02
404 467 7.852945 GCCTATGATGACTTCGTAAATTTCAAG 59.147 37.037 0.00 0.00 0.00 3.02
405 468 7.335673 TGCCTATGATGACTTCGTAAATTTCAA 59.664 33.333 0.00 0.00 0.00 2.69
406 469 6.821160 TGCCTATGATGACTTCGTAAATTTCA 59.179 34.615 0.00 0.00 0.00 2.69
407 470 7.126398 GTGCCTATGATGACTTCGTAAATTTC 58.874 38.462 0.00 0.00 0.00 2.17
408 471 6.038271 GGTGCCTATGATGACTTCGTAAATTT 59.962 38.462 0.00 0.00 0.00 1.82
409 472 5.527582 GGTGCCTATGATGACTTCGTAAATT 59.472 40.000 0.00 0.00 0.00 1.82
410 473 5.057149 GGTGCCTATGATGACTTCGTAAAT 58.943 41.667 0.00 0.00 0.00 1.40
411 474 4.161565 AGGTGCCTATGATGACTTCGTAAA 59.838 41.667 0.00 0.00 0.00 2.01
412 475 3.704566 AGGTGCCTATGATGACTTCGTAA 59.295 43.478 0.00 0.00 0.00 3.18
413 476 3.296854 AGGTGCCTATGATGACTTCGTA 58.703 45.455 0.00 0.00 0.00 3.43
414 477 2.101582 GAGGTGCCTATGATGACTTCGT 59.898 50.000 0.00 0.00 0.00 3.85
415 478 2.748605 GAGGTGCCTATGATGACTTCG 58.251 52.381 0.00 0.00 0.00 3.79
416 479 2.101582 ACGAGGTGCCTATGATGACTTC 59.898 50.000 0.00 0.00 0.00 3.01
417 480 2.101582 GACGAGGTGCCTATGATGACTT 59.898 50.000 0.00 0.00 0.00 3.01
418 481 1.683917 GACGAGGTGCCTATGATGACT 59.316 52.381 0.00 0.00 0.00 3.41
419 482 1.600663 CGACGAGGTGCCTATGATGAC 60.601 57.143 0.00 0.00 0.00 3.06
420 483 0.668535 CGACGAGGTGCCTATGATGA 59.331 55.000 0.00 0.00 0.00 2.92
421 484 0.385751 ACGACGAGGTGCCTATGATG 59.614 55.000 0.00 0.00 0.00 3.07
422 485 0.669077 GACGACGAGGTGCCTATGAT 59.331 55.000 0.00 0.00 0.00 2.45
423 486 1.712018 CGACGACGAGGTGCCTATGA 61.712 60.000 0.00 0.00 42.66 2.15
424 487 1.298413 CGACGACGAGGTGCCTATG 60.298 63.158 0.00 0.00 42.66 2.23
425 488 1.450848 TCGACGACGAGGTGCCTAT 60.451 57.895 5.75 0.00 43.81 2.57
426 489 2.046988 TCGACGACGAGGTGCCTA 60.047 61.111 5.75 0.00 43.81 3.93
447 510 0.966920 TTCAGTGGGAGGAGACGTTC 59.033 55.000 0.00 0.00 0.00 3.95
448 511 1.276421 CATTCAGTGGGAGGAGACGTT 59.724 52.381 0.00 0.00 0.00 3.99
449 512 0.898320 CATTCAGTGGGAGGAGACGT 59.102 55.000 0.00 0.00 0.00 4.34
450 513 0.460987 GCATTCAGTGGGAGGAGACG 60.461 60.000 0.00 0.00 0.00 4.18
451 514 0.615331 TGCATTCAGTGGGAGGAGAC 59.385 55.000 0.00 0.00 0.00 3.36
452 515 0.615331 GTGCATTCAGTGGGAGGAGA 59.385 55.000 0.00 0.00 0.00 3.71
453 516 0.325933 TGTGCATTCAGTGGGAGGAG 59.674 55.000 0.00 0.00 0.00 3.69
454 517 0.994247 ATGTGCATTCAGTGGGAGGA 59.006 50.000 0.00 0.00 0.00 3.71
455 518 1.386533 GATGTGCATTCAGTGGGAGG 58.613 55.000 0.00 0.00 0.00 4.30
456 519 1.012086 CGATGTGCATTCAGTGGGAG 58.988 55.000 0.00 0.00 0.00 4.30
457 520 0.324614 ACGATGTGCATTCAGTGGGA 59.675 50.000 0.00 0.00 0.00 4.37
458 521 0.729116 GACGATGTGCATTCAGTGGG 59.271 55.000 0.00 0.00 0.00 4.61
459 522 0.371301 CGACGATGTGCATTCAGTGG 59.629 55.000 0.00 0.00 0.00 4.00
460 523 0.371301 CCGACGATGTGCATTCAGTG 59.629 55.000 0.00 0.00 0.00 3.66
461 524 0.246360 TCCGACGATGTGCATTCAGT 59.754 50.000 0.00 0.00 0.00 3.41
462 525 1.358877 TTCCGACGATGTGCATTCAG 58.641 50.000 0.00 0.00 0.00 3.02
463 526 1.802069 TTTCCGACGATGTGCATTCA 58.198 45.000 0.00 0.00 0.00 2.57
464 527 2.286418 GGATTTCCGACGATGTGCATTC 60.286 50.000 0.00 0.00 0.00 2.67
465 528 1.670811 GGATTTCCGACGATGTGCATT 59.329 47.619 0.00 0.00 0.00 3.56
466 529 1.134401 AGGATTTCCGACGATGTGCAT 60.134 47.619 0.00 0.00 42.08 3.96
467 530 0.249120 AGGATTTCCGACGATGTGCA 59.751 50.000 0.00 0.00 42.08 4.57
468 531 0.652592 CAGGATTTCCGACGATGTGC 59.347 55.000 0.00 0.00 42.08 4.57
469 532 2.293677 TCAGGATTTCCGACGATGTG 57.706 50.000 0.00 0.00 42.08 3.21
470 533 3.328382 TTTCAGGATTTCCGACGATGT 57.672 42.857 0.00 0.00 42.08 3.06
471 534 5.984233 TTATTTCAGGATTTCCGACGATG 57.016 39.130 0.00 0.00 42.08 3.84
472 535 6.204882 GGATTTATTTCAGGATTTCCGACGAT 59.795 38.462 0.00 0.00 42.08 3.73
473 536 5.526111 GGATTTATTTCAGGATTTCCGACGA 59.474 40.000 0.00 0.00 42.08 4.20
474 537 5.295787 TGGATTTATTTCAGGATTTCCGACG 59.704 40.000 0.00 0.00 42.08 5.12
475 538 6.693315 TGGATTTATTTCAGGATTTCCGAC 57.307 37.500 0.00 0.00 42.08 4.79
476 539 6.942532 CTGGATTTATTTCAGGATTTCCGA 57.057 37.500 0.00 0.00 42.08 4.55
487 550 9.827411 GCTCGTATTTATTCCTGGATTTATTTC 57.173 33.333 0.00 0.00 0.00 2.17
488 551 9.349713 TGCTCGTATTTATTCCTGGATTTATTT 57.650 29.630 0.00 0.00 0.00 1.40
489 552 8.784043 GTGCTCGTATTTATTCCTGGATTTATT 58.216 33.333 0.00 0.00 0.00 1.40
490 553 7.390718 GGTGCTCGTATTTATTCCTGGATTTAT 59.609 37.037 0.00 0.00 0.00 1.40
491 554 6.708949 GGTGCTCGTATTTATTCCTGGATTTA 59.291 38.462 0.00 0.00 0.00 1.40
492 555 5.531287 GGTGCTCGTATTTATTCCTGGATTT 59.469 40.000 0.00 0.00 0.00 2.17
493 556 5.063880 GGTGCTCGTATTTATTCCTGGATT 58.936 41.667 0.00 0.00 0.00 3.01
494 557 4.102524 TGGTGCTCGTATTTATTCCTGGAT 59.897 41.667 0.00 0.00 0.00 3.41
495 558 3.452990 TGGTGCTCGTATTTATTCCTGGA 59.547 43.478 0.00 0.00 0.00 3.86
496 559 3.804036 TGGTGCTCGTATTTATTCCTGG 58.196 45.455 0.00 0.00 0.00 4.45
497 560 3.809832 CCTGGTGCTCGTATTTATTCCTG 59.190 47.826 0.00 0.00 0.00 3.86
498 561 3.709653 TCCTGGTGCTCGTATTTATTCCT 59.290 43.478 0.00 0.00 0.00 3.36
499 562 4.067972 TCCTGGTGCTCGTATTTATTCC 57.932 45.455 0.00 0.00 0.00 3.01
500 563 6.260050 TCAAATCCTGGTGCTCGTATTTATTC 59.740 38.462 0.00 0.00 0.00 1.75
501 564 6.119536 TCAAATCCTGGTGCTCGTATTTATT 58.880 36.000 0.00 0.00 0.00 1.40
502 565 5.680619 TCAAATCCTGGTGCTCGTATTTAT 58.319 37.500 0.00 0.00 0.00 1.40
503 566 5.092554 TCAAATCCTGGTGCTCGTATTTA 57.907 39.130 0.00 0.00 0.00 1.40
504 567 3.950397 TCAAATCCTGGTGCTCGTATTT 58.050 40.909 0.00 0.00 0.00 1.40
505 568 3.627395 TCAAATCCTGGTGCTCGTATT 57.373 42.857 0.00 0.00 0.00 1.89
506 569 3.055094 AGTTCAAATCCTGGTGCTCGTAT 60.055 43.478 0.00 0.00 0.00 3.06
507 570 2.301870 AGTTCAAATCCTGGTGCTCGTA 59.698 45.455 0.00 0.00 0.00 3.43
508 571 1.072331 AGTTCAAATCCTGGTGCTCGT 59.928 47.619 0.00 0.00 0.00 4.18
509 572 1.734465 GAGTTCAAATCCTGGTGCTCG 59.266 52.381 0.00 0.00 0.00 5.03
510 573 2.746362 CAGAGTTCAAATCCTGGTGCTC 59.254 50.000 0.00 0.00 0.00 4.26
511 574 2.553904 CCAGAGTTCAAATCCTGGTGCT 60.554 50.000 0.00 0.00 40.84 4.40
512 575 1.815003 CCAGAGTTCAAATCCTGGTGC 59.185 52.381 0.00 0.00 40.84 5.01
516 579 2.440409 CCCACCAGAGTTCAAATCCTG 58.560 52.381 0.00 0.00 0.00 3.86
517 580 1.272147 GCCCACCAGAGTTCAAATCCT 60.272 52.381 0.00 0.00 0.00 3.24
518 581 1.177401 GCCCACCAGAGTTCAAATCC 58.823 55.000 0.00 0.00 0.00 3.01
519 582 1.815003 CAGCCCACCAGAGTTCAAATC 59.185 52.381 0.00 0.00 0.00 2.17
520 583 1.548582 CCAGCCCACCAGAGTTCAAAT 60.549 52.381 0.00 0.00 0.00 2.32
521 584 0.178992 CCAGCCCACCAGAGTTCAAA 60.179 55.000 0.00 0.00 0.00 2.69
522 585 1.455849 CCAGCCCACCAGAGTTCAA 59.544 57.895 0.00 0.00 0.00 2.69
523 586 2.528818 CCCAGCCCACCAGAGTTCA 61.529 63.158 0.00 0.00 0.00 3.18
524 587 2.352805 CCCAGCCCACCAGAGTTC 59.647 66.667 0.00 0.00 0.00 3.01
525 588 3.971702 GCCCAGCCCACCAGAGTT 61.972 66.667 0.00 0.00 0.00 3.01
527 590 2.377810 TATGCCCAGCCCACCAGAG 61.378 63.158 0.00 0.00 0.00 3.35
528 591 2.286045 TATGCCCAGCCCACCAGA 60.286 61.111 0.00 0.00 0.00 3.86
529 592 2.124151 GTATGCCCAGCCCACCAG 60.124 66.667 0.00 0.00 0.00 4.00
530 593 3.738481 GGTATGCCCAGCCCACCA 61.738 66.667 0.00 0.00 33.43 4.17
531 594 3.738481 TGGTATGCCCAGCCCACC 61.738 66.667 0.00 0.94 38.72 4.61
532 595 2.440247 GTGGTATGCCCAGCCCAC 60.440 66.667 0.00 0.00 46.45 4.61
533 596 2.237965 AAGTGGTATGCCCAGCCCA 61.238 57.895 0.00 0.00 46.45 5.36
534 597 1.754234 CAAGTGGTATGCCCAGCCC 60.754 63.158 0.00 0.00 46.45 5.19
535 598 1.000896 ACAAGTGGTATGCCCAGCC 60.001 57.895 0.00 0.00 46.45 4.85
536 599 1.032114 GGACAAGTGGTATGCCCAGC 61.032 60.000 0.00 0.00 46.45 4.85
537 600 0.620556 AGGACAAGTGGTATGCCCAG 59.379 55.000 0.00 0.00 46.45 4.45
538 601 0.618458 GAGGACAAGTGGTATGCCCA 59.382 55.000 0.00 0.00 42.51 5.36
539 602 0.912486 AGAGGACAAGTGGTATGCCC 59.088 55.000 0.00 0.00 0.00 5.36
540 603 2.237392 AGAAGAGGACAAGTGGTATGCC 59.763 50.000 0.00 0.00 0.00 4.40
541 604 3.618690 AGAAGAGGACAAGTGGTATGC 57.381 47.619 0.00 0.00 0.00 3.14
542 605 5.875359 GGTAAAGAAGAGGACAAGTGGTATG 59.125 44.000 0.00 0.00 0.00 2.39
543 606 5.546499 TGGTAAAGAAGAGGACAAGTGGTAT 59.454 40.000 0.00 0.00 0.00 2.73
544 607 4.903049 TGGTAAAGAAGAGGACAAGTGGTA 59.097 41.667 0.00 0.00 0.00 3.25
587 650 2.609427 TGTCTACAGATGCCAGATGC 57.391 50.000 0.00 0.00 41.77 3.91
588 651 3.869832 CAGTTGTCTACAGATGCCAGATG 59.130 47.826 0.00 0.00 0.00 2.90
589 652 3.681034 GCAGTTGTCTACAGATGCCAGAT 60.681 47.826 9.33 0.00 34.85 2.90
590 653 2.354103 GCAGTTGTCTACAGATGCCAGA 60.354 50.000 9.33 0.00 34.85 3.86
591 654 2.005451 GCAGTTGTCTACAGATGCCAG 58.995 52.381 9.33 0.00 34.85 4.85
592 655 2.099141 GCAGTTGTCTACAGATGCCA 57.901 50.000 9.33 0.00 34.85 4.92
593 656 1.373570 GGCAGTTGTCTACAGATGCC 58.626 55.000 18.90 18.90 45.47 4.40
628 691 8.632551 GTTATTGTTGTTACGAAAATACAAGCC 58.367 33.333 0.00 0.00 32.89 4.35
632 695 9.613957 CATGGTTATTGTTGTTACGAAAATACA 57.386 29.630 0.00 0.00 0.00 2.29
633 696 9.828852 TCATGGTTATTGTTGTTACGAAAATAC 57.171 29.630 0.00 0.00 0.00 1.89
636 699 8.188799 TGTTCATGGTTATTGTTGTTACGAAAA 58.811 29.630 0.00 0.00 0.00 2.29
644 707 5.538053 TGGTCATGTTCATGGTTATTGTTGT 59.462 36.000 12.02 0.00 0.00 3.32
653 716 1.888512 GCAAGTGGTCATGTTCATGGT 59.111 47.619 12.02 0.00 0.00 3.55
784 848 5.981915 CCTAAAGTCGCCTACCTTACATAAC 59.018 44.000 0.00 0.00 0.00 1.89
810 874 2.037641 CCGCATCCATCACTTCAGGATA 59.962 50.000 0.00 0.00 40.07 2.59
814 878 0.463295 AGCCGCATCCATCACTTCAG 60.463 55.000 0.00 0.00 0.00 3.02
907 971 3.117738 AGTGGATTGGATGATGGAAGGAC 60.118 47.826 0.00 0.00 0.00 3.85
919 983 0.842030 AGGCTGTGGAGTGGATTGGA 60.842 55.000 0.00 0.00 0.00 3.53
1014 1078 4.395583 GCCGTGCTTGTGCTGCTC 62.396 66.667 0.00 0.00 40.48 4.26
1023 1087 4.379243 CTCTCCACCGCCGTGCTT 62.379 66.667 0.00 0.00 38.79 3.91
1076 1140 3.594568 CGTACCCGTACTGCTCCA 58.405 61.111 3.66 0.00 34.04 3.86
1163 1227 2.665000 CATGGGGCGTGACTGAGT 59.335 61.111 0.00 0.00 0.00 3.41
1218 1282 1.004560 CTCCTTTGAGTGGAGCGCA 60.005 57.895 11.47 0.00 43.67 6.09
1350 1415 7.640852 CATCTCAATCAAAGATGGTGATCTTC 58.359 38.462 5.41 0.00 46.45 2.87
1393 1460 1.176527 CGTTCATGAACCCCTGCAAT 58.823 50.000 28.40 0.00 38.03 3.56
1406 1473 3.403038 CTTCCAGGTTCTTCACGTTCAT 58.597 45.455 0.00 0.00 0.00 2.57
1407 1474 2.484770 CCTTCCAGGTTCTTCACGTTCA 60.485 50.000 0.00 0.00 0.00 3.18
1429 1496 2.024176 TGAGCAAGGAGAGGTAACCA 57.976 50.000 0.00 0.00 37.17 3.67
1465 1532 4.673375 CTGGCTGCTTGGGGCTGT 62.673 66.667 0.00 0.00 42.39 4.40
1471 1538 4.980702 TGGTGGCTGGCTGCTTGG 62.981 66.667 16.14 0.00 42.39 3.61
1480 1547 2.061509 TGATGGATCATTGGTGGCTG 57.938 50.000 0.00 0.00 0.00 4.85
1565 1632 3.944055 TCAGAAGAAGAAGACGAAGGG 57.056 47.619 0.00 0.00 0.00 3.95
1633 1712 9.009675 TCCCTTTGATAGTAATTAAATCCCAGA 57.990 33.333 6.61 0.00 0.00 3.86
1644 1724 7.576856 CGGCTTTGTTTTCCCTTTGATAGTAAT 60.577 37.037 0.00 0.00 0.00 1.89
1648 1728 4.022329 ACGGCTTTGTTTTCCCTTTGATAG 60.022 41.667 0.00 0.00 0.00 2.08
1766 1870 1.040646 TGAGCTGAGTCGGTGAAACT 58.959 50.000 0.00 0.00 36.74 2.66
1772 1876 5.105310 ACAAGTATAATTGAGCTGAGTCGGT 60.105 40.000 19.08 0.00 34.20 4.69
1875 1982 8.840321 CACTGCAAGCTACTGGTATTATTTAAT 58.160 33.333 0.00 0.00 37.60 1.40
1959 2066 6.741448 TCATGTTTTTAGCGTGTTTTTAGC 57.259 33.333 0.00 0.00 0.00 3.09
1990 2097 4.807834 ACGTCTGCATTGTAGATCTGAATG 59.192 41.667 18.46 18.46 0.00 2.67
2002 2109 2.799978 TGTGTACTGAACGTCTGCATTG 59.200 45.455 0.00 0.00 0.00 2.82
2014 2121 8.217131 AGTTGACGTATGTATATGTGTACTGA 57.783 34.615 1.67 0.00 32.91 3.41
2138 2245 9.654663 GTGATGGATGAAGTAACTAACTAACTT 57.345 33.333 0.00 0.00 37.50 2.66
2144 2251 7.667043 TTGTGTGATGGATGAAGTAACTAAC 57.333 36.000 0.00 0.00 0.00 2.34
2148 2255 7.254590 GCTCTATTGTGTGATGGATGAAGTAAC 60.255 40.741 0.00 0.00 0.00 2.50
2154 2261 3.721035 CGCTCTATTGTGTGATGGATGA 58.279 45.455 0.00 0.00 0.00 2.92
2175 2282 1.892474 TGCACCCTAGGAAAACAATGC 59.108 47.619 11.48 8.59 0.00 3.56
2319 2426 3.562393 CCTTTTCCTTTCCCTCCCTTCTC 60.562 52.174 0.00 0.00 0.00 2.87
2330 2437 3.431626 CCACAAACCCACCTTTTCCTTTC 60.432 47.826 0.00 0.00 0.00 2.62
2355 2462 0.539986 TACGGACAAGCCTTGGATCC 59.460 55.000 9.64 4.20 34.12 3.36
2357 2464 1.276622 ACTACGGACAAGCCTTGGAT 58.723 50.000 9.64 0.00 34.12 3.41
2372 2479 5.993441 GTCAGAGGGAGTCTAGACATACTAC 59.007 48.000 24.44 4.60 35.27 2.73
2382 2489 3.544698 AAAGTGGTCAGAGGGAGTCTA 57.455 47.619 0.00 0.00 32.51 2.59
2389 2496 3.243068 CCAAACGAAAAAGTGGTCAGAGG 60.243 47.826 0.00 0.00 0.00 3.69
2393 2500 3.377798 GGTACCAAACGAAAAAGTGGTCA 59.622 43.478 7.15 0.00 43.34 4.02
2403 2510 7.446013 AGAATTCAACAATAGGTACCAAACGAA 59.554 33.333 15.94 7.52 0.00 3.85
2411 2518 6.806739 GCAAACCAGAATTCAACAATAGGTAC 59.193 38.462 8.44 0.00 0.00 3.34
2424 2531 1.883926 GTACACGGGCAAACCAGAATT 59.116 47.619 0.00 0.00 40.22 2.17
2436 2543 2.807392 ACCAAACGTTTATGTACACGGG 59.193 45.455 14.20 9.76 40.84 5.28
2439 2546 5.466393 AGGTACACCAAACGTTTATGTACAC 59.534 40.000 37.29 31.18 40.32 2.90
2443 2550 4.706035 TGAGGTACACCAAACGTTTATGT 58.294 39.130 24.95 24.95 38.89 2.29


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.