Multiple sequence alignment - TraesCS6B01G011000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G011000 chr6B 100.000 5520 0 0 1 5520 6601497 6607016 0.000000e+00 10194.0
1 TraesCS6B01G011000 chr6B 95.364 1100 51 0 3721 4820 6681934 6680835 0.000000e+00 1749.0
2 TraesCS6B01G011000 chr6B 93.488 1121 61 3 902 2020 6683223 6682113 0.000000e+00 1655.0
3 TraesCS6B01G011000 chr6B 89.106 716 69 8 160 870 6683926 6683215 0.000000e+00 881.0
4 TraesCS6B01G011000 chr6B 91.546 485 19 12 4984 5466 6680585 6680121 0.000000e+00 649.0
5 TraesCS6B01G011000 chr6B 95.181 166 7 1 4821 4986 6680787 6680623 1.530000e-65 261.0
6 TraesCS6B01G011000 chr6B 92.623 122 8 1 3569 3689 6682054 6681933 2.040000e-39 174.0
7 TraesCS6B01G011000 chr6D 90.780 2744 143 40 1007 3689 3314826 3317520 0.000000e+00 3565.0
8 TraesCS6B01G011000 chr6D 94.795 1095 53 3 3721 4814 3317519 3318610 0.000000e+00 1703.0
9 TraesCS6B01G011000 chr6D 90.926 529 41 7 4991 5515 3297922 3297397 0.000000e+00 704.0
10 TraesCS6B01G011000 chr6D 86.332 578 48 11 982 1554 3311350 3311901 7.910000e-168 601.0
11 TraesCS6B01G011000 chr6D 94.767 344 16 2 4984 5326 3318866 3319208 8.140000e-148 534.0
12 TraesCS6B01G011000 chr6D 85.598 493 58 4 4292 4772 3302676 3302185 6.380000e-139 505.0
13 TraesCS6B01G011000 chr6D 97.326 187 5 0 5329 5515 3319623 3319809 8.920000e-83 318.0
14 TraesCS6B01G011000 chr6D 96.791 187 6 0 5329 5515 3336625 3336811 4.150000e-81 313.0
15 TraesCS6B01G011000 chr6D 96.257 187 7 0 5329 5515 3324869 3325055 1.930000e-79 307.0
16 TraesCS6B01G011000 chr6D 95.187 187 9 0 5329 5515 3330744 3330930 4.180000e-76 296.0
17 TraesCS6B01G011000 chr6D 89.759 166 16 1 4821 4986 3318664 3318828 1.560000e-50 211.0
18 TraesCS6B01G011000 chr6D 72.197 446 117 6 3744 4186 449160931 449160490 4.490000e-26 130.0
19 TraesCS6B01G011000 chr6D 91.566 83 5 1 76 156 3314876 3314958 4.520000e-21 113.0
20 TraesCS6B01G011000 chr6A 90.517 2436 159 35 2608 4986 2131798 2134218 0.000000e+00 3153.0
21 TraesCS6B01G011000 chr6A 91.705 1073 80 4 985 2055 2130307 2131372 0.000000e+00 1480.0
22 TraesCS6B01G011000 chr6A 88.200 661 55 9 902 1554 2127409 2128054 0.000000e+00 767.0
23 TraesCS6B01G011000 chr6A 88.051 544 46 9 4984 5520 2134256 2134787 1.310000e-175 627.0
24 TraesCS6B01G011000 chr7D 86.034 938 107 13 1047 1978 18812441 18811522 0.000000e+00 985.0
25 TraesCS6B01G011000 chr7D 84.064 935 115 16 3535 4448 18809277 18808356 0.000000e+00 870.0
26 TraesCS6B01G011000 chr7D 84.557 790 86 22 1212 1978 18833672 18834448 0.000000e+00 750.0
27 TraesCS6B01G011000 chr7D 81.452 620 98 14 160 769 198581471 198582083 4.970000e-135 492.0
28 TraesCS6B01G011000 chr7D 84.615 117 14 2 2016 2128 18811021 18810905 4.520000e-21 113.0
29 TraesCS6B01G011000 chr7D 83.133 83 12 1 75 155 18812433 18812351 2.130000e-09 75.0
30 TraesCS6B01G011000 chr4A 85.745 940 116 10 1046 1978 713931218 713932146 0.000000e+00 977.0
31 TraesCS6B01G011000 chr4A 81.966 1048 135 31 3433 4448 713934066 713935091 0.000000e+00 839.0
32 TraesCS6B01G011000 chr4A 88.520 662 76 0 3713 4374 713894352 713893691 0.000000e+00 802.0
33 TraesCS6B01G011000 chr4A 83.099 568 66 14 1417 1982 713898481 713897942 1.790000e-134 490.0
34 TraesCS6B01G011000 chr4A 89.610 77 6 2 8 82 395392805 395392881 4.550000e-16 97.1
35 TraesCS6B01G011000 chr4A 88.608 79 7 2 3 79 258346237 258346315 1.640000e-15 95.3
36 TraesCS6B01G011000 chr4A 87.143 70 9 0 75 144 713931229 713931298 4.580000e-11 80.5
37 TraesCS6B01G011000 chr4A 82.895 76 13 0 75 150 713901895 713901820 9.920000e-08 69.4
38 TraesCS6B01G011000 chr7A 85.106 940 121 8 1046 1975 19178515 19177585 0.000000e+00 942.0
39 TraesCS6B01G011000 chr7A 88.235 663 74 2 3712 4374 19175218 19174560 0.000000e+00 789.0
40 TraesCS6B01G011000 chr7A 82.040 696 99 12 1099 1794 19145621 19146290 2.230000e-158 569.0
41 TraesCS6B01G011000 chr7A 90.667 75 5 2 7 79 321575054 321574980 1.270000e-16 99.0
42 TraesCS6B01G011000 chr7A 84.337 83 11 1 75 155 19178504 19178422 4.580000e-11 80.5
43 TraesCS6B01G011000 chr7A 88.060 67 6 2 1041 1105 19144584 19144650 1.650000e-10 78.7
44 TraesCS6B01G011000 chr4B 86.578 529 56 13 160 680 622520339 622520860 2.230000e-158 569.0
45 TraesCS6B01G011000 chr4B 81.981 616 97 11 163 770 96319968 96319359 1.370000e-140 510.0
46 TraesCS6B01G011000 chr4B 81.260 619 94 17 160 767 504699284 504699891 1.080000e-131 481.0
47 TraesCS6B01G011000 chr2D 83.040 625 88 14 161 769 180837809 180837187 8.080000e-153 551.0
48 TraesCS6B01G011000 chr4D 82.488 611 87 18 170 769 478484331 478483730 8.200000e-143 518.0
49 TraesCS6B01G011000 chr4D 90.667 75 5 2 7 79 184858582 184858508 1.270000e-16 99.0
50 TraesCS6B01G011000 chr5D 82.372 607 93 13 170 769 416232250 416232849 2.950000e-142 516.0
51 TraesCS6B01G011000 chr5D 90.541 74 5 2 8 79 59424776 59424849 4.550000e-16 97.1
52 TraesCS6B01G011000 chr2B 81.773 598 106 2 3735 4332 727221828 727221234 1.070000e-136 497.0
53 TraesCS6B01G011000 chr2B 81.281 609 97 15 170 769 487733049 487733649 1.390000e-130 477.0
54 TraesCS6B01G011000 chr3D 80.421 618 98 19 170 769 581378199 581377587 3.030000e-122 449.0
55 TraesCS6B01G011000 chr1D 91.781 73 5 1 8 79 324301320 324301392 3.520000e-17 100.0
56 TraesCS6B01G011000 chr1D 90.541 74 6 1 7 79 143926294 143926367 4.550000e-16 97.1
57 TraesCS6B01G011000 chr1D 90.541 74 5 2 8 79 475344393 475344466 4.550000e-16 97.1
58 TraesCS6B01G011000 chr2A 90.667 75 5 2 7 79 107103609 107103535 1.270000e-16 99.0
59 TraesCS6B01G011000 chr3B 92.683 41 1 2 2405 2444 735109464 735109425 2.150000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G011000 chr6B 6601497 6607016 5519 False 10194.000000 10194 100.000000 1 5520 1 chr6B.!!$F1 5519
1 TraesCS6B01G011000 chr6B 6680121 6683926 3805 True 894.833333 1749 92.884667 160 5466 6 chr6B.!!$R1 5306
2 TraesCS6B01G011000 chr6D 3311350 3319809 8459 False 1006.428571 3565 92.189286 76 5515 7 chr6D.!!$F4 5439
3 TraesCS6B01G011000 chr6D 3297397 3297922 525 True 704.000000 704 90.926000 4991 5515 1 chr6D.!!$R1 524
4 TraesCS6B01G011000 chr6A 2127409 2134787 7378 False 1506.750000 3153 89.618250 902 5520 4 chr6A.!!$F1 4618
5 TraesCS6B01G011000 chr7D 18833672 18834448 776 False 750.000000 750 84.557000 1212 1978 1 chr7D.!!$F1 766
6 TraesCS6B01G011000 chr7D 18808356 18812441 4085 True 510.750000 985 84.461500 75 4448 4 chr7D.!!$R1 4373
7 TraesCS6B01G011000 chr7D 198581471 198582083 612 False 492.000000 492 81.452000 160 769 1 chr7D.!!$F2 609
8 TraesCS6B01G011000 chr4A 713931218 713935091 3873 False 632.166667 977 84.951333 75 4448 3 chr4A.!!$F3 4373
9 TraesCS6B01G011000 chr4A 713893691 713901895 8204 True 453.800000 802 84.838000 75 4374 3 chr4A.!!$R1 4299
10 TraesCS6B01G011000 chr7A 19174560 19178515 3955 True 603.833333 942 85.892667 75 4374 3 chr7A.!!$R2 4299
11 TraesCS6B01G011000 chr7A 19144584 19146290 1706 False 323.850000 569 85.050000 1041 1794 2 chr7A.!!$F1 753
12 TraesCS6B01G011000 chr4B 622520339 622520860 521 False 569.000000 569 86.578000 160 680 1 chr4B.!!$F2 520
13 TraesCS6B01G011000 chr4B 96319359 96319968 609 True 510.000000 510 81.981000 163 770 1 chr4B.!!$R1 607
14 TraesCS6B01G011000 chr4B 504699284 504699891 607 False 481.000000 481 81.260000 160 767 1 chr4B.!!$F1 607
15 TraesCS6B01G011000 chr2D 180837187 180837809 622 True 551.000000 551 83.040000 161 769 1 chr2D.!!$R1 608
16 TraesCS6B01G011000 chr4D 478483730 478484331 601 True 518.000000 518 82.488000 170 769 1 chr4D.!!$R2 599
17 TraesCS6B01G011000 chr5D 416232250 416232849 599 False 516.000000 516 82.372000 170 769 1 chr5D.!!$F2 599
18 TraesCS6B01G011000 chr2B 727221234 727221828 594 True 497.000000 497 81.773000 3735 4332 1 chr2B.!!$R1 597
19 TraesCS6B01G011000 chr2B 487733049 487733649 600 False 477.000000 477 81.281000 170 769 1 chr2B.!!$F1 599
20 TraesCS6B01G011000 chr3D 581377587 581378199 612 True 449.000000 449 80.421000 170 769 1 chr3D.!!$R1 599

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
138 139 0.036010 GCAGCTTCCTGTGCCTCTTA 60.036 55.0 0.00 0.00 41.26 2.10 F
145 146 0.107945 CCTGTGCCTCTTACTCCAGC 60.108 60.0 0.00 0.00 0.00 4.85 F
148 149 0.179124 GTGCCTCTTACTCCAGCTCG 60.179 60.0 0.00 0.00 0.00 5.03 F
151 152 0.383949 CCTCTTACTCCAGCTCGCTC 59.616 60.0 0.00 0.00 0.00 5.03 F
245 248 0.532417 CACTAGATGCAGGCAGGAGC 60.532 60.0 0.00 0.00 41.10 4.70 F
963 988 0.601311 GCGGATCCATGTACTCCTGC 60.601 60.0 13.41 0.00 0.00 4.85 F
2311 13851 0.753479 TTTGAAAACTGGGCGAGCCA 60.753 50.0 16.65 1.48 37.98 4.75 F
2343 13883 0.105555 AGAGAGAGAGATGCAGGGGG 60.106 60.0 0.00 0.00 0.00 5.40 F
2346 13886 0.105760 GAGAGAGATGCAGGGGGAGA 60.106 60.0 0.00 0.00 0.00 3.71 F
2911 16611 0.106519 ACTTTGTGGCACCAAGCTCT 60.107 50.0 26.13 8.89 44.79 4.09 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1002 1027 0.315886 TAGAGCTCGCGGTTTGTTCA 59.684 50.000 6.13 0.00 0.00 3.18 R
1004 1029 0.669625 GGTAGAGCTCGCGGTTTGTT 60.670 55.000 6.13 0.00 0.00 2.83 R
1392 11806 1.063649 CCCGTACGACATGTCCTCG 59.936 63.158 18.76 19.13 37.17 4.63 R
2128 13667 1.841277 AGTGCACCCCGTGGATTAATA 59.159 47.619 14.63 0.00 36.11 0.98 R
2166 13705 7.118496 AGTAGATAGTCAGCTAATGCAAACT 57.882 36.000 0.00 0.00 42.74 2.66 R
2324 13864 0.105555 CCCCCTGCATCTCTCTCTCT 60.106 60.000 0.00 0.00 0.00 3.10 R
3710 17772 0.248539 TGCACGCACGGGTTTAAAAC 60.249 50.000 0.00 0.00 0.00 2.43 R
4341 18407 0.250901 ATGCGTCTGGAACAAGCCTT 60.251 50.000 0.00 0.00 38.70 4.35 R
4342 18408 0.613260 TATGCGTCTGGAACAAGCCT 59.387 50.000 0.00 0.00 38.70 4.58 R
4759 18829 0.178873 AACTTGGAGGAGTAGCCCCA 60.179 55.000 0.00 0.00 37.37 4.96 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.300765 ACCCTCGTGACGGTGTCC 61.301 66.667 4.70 0.00 0.00 4.02
18 19 2.989824 CCCTCGTGACGGTGTCCT 60.990 66.667 4.70 0.00 0.00 3.85
19 20 1.676635 CCCTCGTGACGGTGTCCTA 60.677 63.158 4.70 0.00 0.00 2.94
20 21 1.654954 CCCTCGTGACGGTGTCCTAG 61.655 65.000 4.70 0.00 0.00 3.02
21 22 0.675837 CCTCGTGACGGTGTCCTAGA 60.676 60.000 4.70 0.00 0.00 2.43
22 23 1.380524 CTCGTGACGGTGTCCTAGAT 58.619 55.000 4.70 0.00 0.00 1.98
23 24 1.743958 CTCGTGACGGTGTCCTAGATT 59.256 52.381 4.70 0.00 0.00 2.40
24 25 2.941064 CTCGTGACGGTGTCCTAGATTA 59.059 50.000 4.70 0.00 0.00 1.75
25 26 3.548770 TCGTGACGGTGTCCTAGATTAT 58.451 45.455 4.70 0.00 0.00 1.28
26 27 3.314357 TCGTGACGGTGTCCTAGATTATG 59.686 47.826 4.70 0.00 0.00 1.90
27 28 3.550233 CGTGACGGTGTCCTAGATTATGG 60.550 52.174 0.00 0.00 0.00 2.74
28 29 2.364324 TGACGGTGTCCTAGATTATGGC 59.636 50.000 0.00 0.00 0.00 4.40
29 30 2.628657 GACGGTGTCCTAGATTATGGCT 59.371 50.000 0.00 0.00 0.00 4.75
30 31 3.825014 GACGGTGTCCTAGATTATGGCTA 59.175 47.826 0.00 0.00 0.00 3.93
31 32 3.573110 ACGGTGTCCTAGATTATGGCTAC 59.427 47.826 0.00 0.00 0.00 3.58
32 33 3.827302 CGGTGTCCTAGATTATGGCTACT 59.173 47.826 0.00 0.00 0.00 2.57
33 34 4.082679 CGGTGTCCTAGATTATGGCTACTC 60.083 50.000 0.00 0.00 0.00 2.59
34 35 4.833380 GGTGTCCTAGATTATGGCTACTCA 59.167 45.833 0.00 0.00 0.00 3.41
35 36 5.279056 GGTGTCCTAGATTATGGCTACTCAC 60.279 48.000 0.00 0.00 0.00 3.51
36 37 4.833380 TGTCCTAGATTATGGCTACTCACC 59.167 45.833 0.00 0.00 0.00 4.02
37 38 4.833380 GTCCTAGATTATGGCTACTCACCA 59.167 45.833 0.00 0.00 42.61 4.17
38 39 4.833380 TCCTAGATTATGGCTACTCACCAC 59.167 45.833 0.00 0.00 40.82 4.16
39 40 3.735237 AGATTATGGCTACTCACCACG 57.265 47.619 0.00 0.00 40.82 4.94
40 41 3.031736 AGATTATGGCTACTCACCACGT 58.968 45.455 0.00 0.00 40.82 4.49
41 42 2.953466 TTATGGCTACTCACCACGTC 57.047 50.000 0.00 0.00 40.82 4.34
42 43 1.842052 TATGGCTACTCACCACGTCA 58.158 50.000 0.00 0.00 40.82 4.35
43 44 1.195115 ATGGCTACTCACCACGTCAT 58.805 50.000 0.00 0.00 40.82 3.06
44 45 0.530744 TGGCTACTCACCACGTCATC 59.469 55.000 0.00 0.00 30.29 2.92
45 46 0.818296 GGCTACTCACCACGTCATCT 59.182 55.000 0.00 0.00 0.00 2.90
46 47 2.022195 GGCTACTCACCACGTCATCTA 58.978 52.381 0.00 0.00 0.00 1.98
47 48 2.223525 GGCTACTCACCACGTCATCTAC 60.224 54.545 0.00 0.00 0.00 2.59
48 49 2.223525 GCTACTCACCACGTCATCTACC 60.224 54.545 0.00 0.00 0.00 3.18
49 50 0.809385 ACTCACCACGTCATCTACCG 59.191 55.000 0.00 0.00 0.00 4.02
50 51 1.092348 CTCACCACGTCATCTACCGA 58.908 55.000 0.00 0.00 0.00 4.69
51 52 0.806868 TCACCACGTCATCTACCGAC 59.193 55.000 0.00 0.00 0.00 4.79
52 53 0.179145 CACCACGTCATCTACCGACC 60.179 60.000 0.00 0.00 0.00 4.79
53 54 0.609957 ACCACGTCATCTACCGACCA 60.610 55.000 0.00 0.00 0.00 4.02
54 55 0.100682 CCACGTCATCTACCGACCAG 59.899 60.000 0.00 0.00 0.00 4.00
65 66 4.530857 CGACCAGGTGGATCGGGC 62.531 72.222 0.00 0.00 38.94 6.13
66 67 4.176752 GACCAGGTGGATCGGGCC 62.177 72.222 0.00 0.00 38.94 5.80
69 70 4.227134 CAGGTGGATCGGGCCGAG 62.227 72.222 33.82 14.73 39.91 4.63
72 73 4.222847 GTGGATCGGGCCGAGGAC 62.223 72.222 33.82 23.91 39.91 3.85
81 82 4.864334 GCCGAGGACCCCATGCAG 62.864 72.222 0.00 0.00 0.00 4.41
82 83 4.864334 CCGAGGACCCCATGCAGC 62.864 72.222 0.00 0.00 0.00 5.25
83 84 3.790437 CGAGGACCCCATGCAGCT 61.790 66.667 0.00 0.00 0.00 4.24
84 85 2.191641 GAGGACCCCATGCAGCTC 59.808 66.667 0.00 0.00 0.00 4.09
85 86 3.746949 GAGGACCCCATGCAGCTCG 62.747 68.421 0.00 0.00 0.00 5.03
106 107 3.991051 CTCTGTGCACCGACCCGT 61.991 66.667 15.69 0.00 0.00 5.28
107 108 3.515316 CTCTGTGCACCGACCCGTT 62.515 63.158 15.69 0.00 0.00 4.44
108 109 3.041940 CTGTGCACCGACCCGTTC 61.042 66.667 15.69 0.00 0.00 3.95
109 110 3.800685 CTGTGCACCGACCCGTTCA 62.801 63.158 15.69 0.00 0.00 3.18
110 111 2.358247 GTGCACCGACCCGTTCAT 60.358 61.111 5.22 0.00 0.00 2.57
111 112 2.358125 TGCACCGACCCGTTCATG 60.358 61.111 0.00 0.00 0.00 3.07
112 113 2.047655 GCACCGACCCGTTCATGA 60.048 61.111 0.00 0.00 0.00 3.07
113 114 1.449601 GCACCGACCCGTTCATGAT 60.450 57.895 0.00 0.00 0.00 2.45
114 115 0.179094 GCACCGACCCGTTCATGATA 60.179 55.000 0.00 0.00 0.00 2.15
115 116 1.540363 GCACCGACCCGTTCATGATAT 60.540 52.381 0.00 0.00 0.00 1.63
116 117 2.135139 CACCGACCCGTTCATGATATG 58.865 52.381 0.00 0.00 0.00 1.78
117 118 1.760613 ACCGACCCGTTCATGATATGT 59.239 47.619 0.00 0.00 0.00 2.29
118 119 2.169769 ACCGACCCGTTCATGATATGTT 59.830 45.455 0.00 0.00 0.00 2.71
119 120 2.543848 CCGACCCGTTCATGATATGTTG 59.456 50.000 0.00 0.00 0.00 3.33
120 121 2.032894 CGACCCGTTCATGATATGTTGC 60.033 50.000 0.00 0.00 0.00 4.17
121 122 2.942376 GACCCGTTCATGATATGTTGCA 59.058 45.455 0.00 0.00 0.00 4.08
122 123 2.945008 ACCCGTTCATGATATGTTGCAG 59.055 45.455 0.00 0.00 0.00 4.41
123 124 2.287188 CCCGTTCATGATATGTTGCAGC 60.287 50.000 0.00 0.00 0.00 5.25
124 125 2.615447 CCGTTCATGATATGTTGCAGCT 59.385 45.455 1.17 0.00 0.00 4.24
125 126 3.065786 CCGTTCATGATATGTTGCAGCTT 59.934 43.478 1.17 0.00 0.00 3.74
126 127 4.277258 CGTTCATGATATGTTGCAGCTTC 58.723 43.478 1.17 0.00 0.00 3.86
127 128 4.604976 GTTCATGATATGTTGCAGCTTCC 58.395 43.478 1.17 0.00 0.00 3.46
128 129 4.160642 TCATGATATGTTGCAGCTTCCT 57.839 40.909 1.17 0.00 0.00 3.36
129 130 3.881089 TCATGATATGTTGCAGCTTCCTG 59.119 43.478 1.17 0.79 42.13 3.86
130 131 3.354948 TGATATGTTGCAGCTTCCTGT 57.645 42.857 1.17 0.00 41.26 4.00
131 132 3.011818 TGATATGTTGCAGCTTCCTGTG 58.988 45.455 1.17 0.00 41.26 3.66
132 133 1.167851 TATGTTGCAGCTTCCTGTGC 58.832 50.000 1.17 0.00 41.26 4.57
133 134 1.530013 ATGTTGCAGCTTCCTGTGCC 61.530 55.000 1.17 0.00 41.26 5.01
134 135 1.900498 GTTGCAGCTTCCTGTGCCT 60.900 57.895 0.00 0.00 41.26 4.75
135 136 1.601759 TTGCAGCTTCCTGTGCCTC 60.602 57.895 0.00 0.00 41.26 4.70
136 137 2.060567 TTGCAGCTTCCTGTGCCTCT 62.061 55.000 0.00 0.00 41.26 3.69
137 138 1.303155 GCAGCTTCCTGTGCCTCTT 60.303 57.895 0.00 0.00 41.26 2.85
138 139 0.036010 GCAGCTTCCTGTGCCTCTTA 60.036 55.000 0.00 0.00 41.26 2.10
139 140 1.731720 CAGCTTCCTGTGCCTCTTAC 58.268 55.000 0.00 0.00 34.31 2.34
140 141 1.277557 CAGCTTCCTGTGCCTCTTACT 59.722 52.381 0.00 0.00 34.31 2.24
141 142 1.552792 AGCTTCCTGTGCCTCTTACTC 59.447 52.381 0.00 0.00 0.00 2.59
142 143 1.406205 GCTTCCTGTGCCTCTTACTCC 60.406 57.143 0.00 0.00 0.00 3.85
143 144 1.902508 CTTCCTGTGCCTCTTACTCCA 59.097 52.381 0.00 0.00 0.00 3.86
144 145 1.561643 TCCTGTGCCTCTTACTCCAG 58.438 55.000 0.00 0.00 0.00 3.86
145 146 0.107945 CCTGTGCCTCTTACTCCAGC 60.108 60.000 0.00 0.00 0.00 4.85
146 147 0.901124 CTGTGCCTCTTACTCCAGCT 59.099 55.000 0.00 0.00 0.00 4.24
147 148 0.898320 TGTGCCTCTTACTCCAGCTC 59.102 55.000 0.00 0.00 0.00 4.09
148 149 0.179124 GTGCCTCTTACTCCAGCTCG 60.179 60.000 0.00 0.00 0.00 5.03
149 150 1.227118 GCCTCTTACTCCAGCTCGC 60.227 63.158 0.00 0.00 0.00 5.03
150 151 1.671901 GCCTCTTACTCCAGCTCGCT 61.672 60.000 0.00 0.00 0.00 4.93
151 152 0.383949 CCTCTTACTCCAGCTCGCTC 59.616 60.000 0.00 0.00 0.00 5.03
152 153 0.383949 CTCTTACTCCAGCTCGCTCC 59.616 60.000 0.00 0.00 0.00 4.70
153 154 1.064946 CTTACTCCAGCTCGCTCCG 59.935 63.158 0.00 0.00 0.00 4.63
154 155 2.945398 CTTACTCCAGCTCGCTCCGC 62.945 65.000 0.00 0.00 0.00 5.54
155 156 3.997400 TACTCCAGCTCGCTCCGCT 62.997 63.158 0.00 0.00 38.49 5.52
156 157 4.140599 CTCCAGCTCGCTCCGCTT 62.141 66.667 0.00 0.00 35.07 4.68
157 158 4.135153 TCCAGCTCGCTCCGCTTC 62.135 66.667 0.00 0.00 35.07 3.86
224 227 8.501580 AGGCGTTACTCAGTTTTTATCTTTAAC 58.498 33.333 0.00 0.00 0.00 2.01
245 248 0.532417 CACTAGATGCAGGCAGGAGC 60.532 60.000 0.00 0.00 41.10 4.70
322 328 1.148310 GGACGTGATGCCCATATTCG 58.852 55.000 0.00 0.00 0.00 3.34
330 336 2.998316 TGCCCATATTCGTGATCACA 57.002 45.000 24.93 7.51 0.00 3.58
331 337 3.274095 TGCCCATATTCGTGATCACAA 57.726 42.857 24.93 17.45 0.00 3.33
358 364 7.096844 CCTTAGATATCGTCATGATTATTCGCG 60.097 40.741 0.00 0.00 38.57 5.87
517 527 9.907576 CAAAAGTATCTCGCTGAGTTTTATTAG 57.092 33.333 5.66 0.00 0.00 1.73
571 591 3.957497 AGATCTCATCCTTGCGAGTAACT 59.043 43.478 0.00 0.00 0.00 2.24
590 610 2.443255 ACTGTGAAGGGATTGACAACCT 59.557 45.455 0.00 0.00 35.78 3.50
615 635 7.392494 TTTTATCACGTTGGGTGCAAATATA 57.608 32.000 0.00 0.00 46.56 0.86
620 641 6.692486 TCACGTTGGGTGCAAATATATTTTT 58.308 32.000 8.01 0.00 46.56 1.94
640 661 4.502171 TTTGTGTGCAGGTGTTATGATG 57.498 40.909 0.00 0.00 0.00 3.07
660 681 2.135933 GGGAGACTTGTGTGTTTCTCG 58.864 52.381 0.00 0.00 36.18 4.04
670 691 4.304110 TGTGTGTTTCTCGTACTGGATTC 58.696 43.478 0.00 0.00 0.00 2.52
695 717 7.444183 TCATACCTTGGTTTTTAACTGAGTGAG 59.556 37.037 0.00 0.00 0.00 3.51
737 760 6.434965 TCATGCATCATCCTTTTCTCTTCAAA 59.565 34.615 0.00 0.00 0.00 2.69
770 793 5.035784 ACGAAAGCTCAAGAAATAGCAAC 57.964 39.130 0.00 0.00 41.32 4.17
777 800 1.135402 CAAGAAATAGCAACCCGCCAC 60.135 52.381 0.00 0.00 44.04 5.01
801 824 1.186267 AGGTGGGTGACTCGTTCCTC 61.186 60.000 0.00 0.00 0.00 3.71
819 842 3.116356 TCCTCTCCCTAAGCCCAATCATA 60.116 47.826 0.00 0.00 0.00 2.15
857 880 1.238439 AAGCCCAATCATAATCCGCG 58.762 50.000 0.00 0.00 0.00 6.46
862 885 1.864711 CCAATCATAATCCGCGACGTT 59.135 47.619 8.23 1.22 0.00 3.99
863 886 2.286833 CCAATCATAATCCGCGACGTTT 59.713 45.455 8.23 0.00 0.00 3.60
864 887 3.491639 CCAATCATAATCCGCGACGTTTA 59.508 43.478 8.23 0.00 0.00 2.01
865 888 4.025563 CCAATCATAATCCGCGACGTTTAA 60.026 41.667 8.23 0.00 0.00 1.52
866 889 4.703899 ATCATAATCCGCGACGTTTAAC 57.296 40.909 8.23 0.00 0.00 2.01
867 890 3.772932 TCATAATCCGCGACGTTTAACT 58.227 40.909 8.23 0.00 0.00 2.24
868 891 4.175516 TCATAATCCGCGACGTTTAACTT 58.824 39.130 8.23 0.00 0.00 2.66
869 892 4.626604 TCATAATCCGCGACGTTTAACTTT 59.373 37.500 8.23 0.00 0.00 2.66
870 893 5.804473 TCATAATCCGCGACGTTTAACTTTA 59.196 36.000 8.23 0.00 0.00 1.85
871 894 6.476380 TCATAATCCGCGACGTTTAACTTTAT 59.524 34.615 8.23 0.00 0.00 1.40
872 895 3.976468 TCCGCGACGTTTAACTTTATG 57.024 42.857 8.23 0.00 0.00 1.90
873 896 3.316283 TCCGCGACGTTTAACTTTATGT 58.684 40.909 8.23 0.00 0.00 2.29
874 897 3.121611 TCCGCGACGTTTAACTTTATGTG 59.878 43.478 8.23 0.00 0.00 3.21
875 898 3.120923 CCGCGACGTTTAACTTTATGTGT 60.121 43.478 8.23 0.00 0.00 3.72
876 899 4.089780 CCGCGACGTTTAACTTTATGTGTA 59.910 41.667 8.23 0.00 0.00 2.90
877 900 5.235500 CGCGACGTTTAACTTTATGTGTAG 58.765 41.667 0.00 0.00 0.00 2.74
878 901 5.544621 GCGACGTTTAACTTTATGTGTAGG 58.455 41.667 0.00 0.00 0.00 3.18
879 902 5.345741 GCGACGTTTAACTTTATGTGTAGGA 59.654 40.000 0.00 0.00 0.00 2.94
880 903 6.128849 GCGACGTTTAACTTTATGTGTAGGAA 60.129 38.462 0.00 0.00 0.00 3.36
881 904 7.412237 GCGACGTTTAACTTTATGTGTAGGAAT 60.412 37.037 0.00 0.00 0.00 3.01
882 905 8.106348 CGACGTTTAACTTTATGTGTAGGAATC 58.894 37.037 0.00 0.00 0.00 2.52
883 906 7.956558 ACGTTTAACTTTATGTGTAGGAATCG 58.043 34.615 0.00 0.00 0.00 3.34
884 907 7.599998 ACGTTTAACTTTATGTGTAGGAATCGT 59.400 33.333 0.00 0.00 0.00 3.73
885 908 8.437742 CGTTTAACTTTATGTGTAGGAATCGTT 58.562 33.333 0.00 0.00 0.00 3.85
886 909 9.750882 GTTTAACTTTATGTGTAGGAATCGTTC 57.249 33.333 0.00 0.00 0.00 3.95
887 910 6.642683 AACTTTATGTGTAGGAATCGTTCG 57.357 37.500 0.00 0.00 0.00 3.95
888 911 5.717119 ACTTTATGTGTAGGAATCGTTCGT 58.283 37.500 0.00 0.00 0.00 3.85
889 912 6.855836 ACTTTATGTGTAGGAATCGTTCGTA 58.144 36.000 0.00 0.00 0.00 3.43
890 913 7.315142 ACTTTATGTGTAGGAATCGTTCGTAA 58.685 34.615 3.04 0.00 32.49 3.18
891 914 7.487189 ACTTTATGTGTAGGAATCGTTCGTAAG 59.513 37.037 3.04 0.00 32.49 2.34
892 915 4.771590 TGTGTAGGAATCGTTCGTAAGT 57.228 40.909 3.04 0.00 39.48 2.24
893 916 5.878332 TGTGTAGGAATCGTTCGTAAGTA 57.122 39.130 3.04 0.00 39.48 2.24
894 917 6.441093 TGTGTAGGAATCGTTCGTAAGTAT 57.559 37.500 3.04 0.00 39.48 2.12
895 918 6.855836 TGTGTAGGAATCGTTCGTAAGTATT 58.144 36.000 3.04 0.00 39.48 1.89
896 919 7.984391 TGTGTAGGAATCGTTCGTAAGTATTA 58.016 34.615 3.04 0.00 39.48 0.98
934 959 9.638239 TTGGCATACATAATCTGAAAAGAAAAC 57.362 29.630 0.00 0.00 0.00 2.43
958 983 5.337571 CCATACATAAGCGGATCCATGTACT 60.338 44.000 19.59 10.09 36.86 2.73
959 984 4.258702 ACATAAGCGGATCCATGTACTC 57.741 45.455 13.41 0.00 30.04 2.59
960 985 3.006967 ACATAAGCGGATCCATGTACTCC 59.993 47.826 13.41 0.00 30.04 3.85
961 986 1.794714 AAGCGGATCCATGTACTCCT 58.205 50.000 13.41 0.00 0.00 3.69
962 987 1.043816 AGCGGATCCATGTACTCCTG 58.956 55.000 13.41 0.00 0.00 3.86
963 988 0.601311 GCGGATCCATGTACTCCTGC 60.601 60.000 13.41 0.00 0.00 4.85
972 997 6.510879 TCCATGTACTCCTGCTATATAACG 57.489 41.667 0.00 0.00 0.00 3.18
999 1024 5.472820 ACGAAATACTACTCCGCTAGCTAAT 59.527 40.000 13.93 0.00 0.00 1.73
1002 1027 6.651975 AATACTACTCCGCTAGCTAATTGT 57.348 37.500 13.93 7.19 0.00 2.71
1003 1028 4.308899 ACTACTCCGCTAGCTAATTGTG 57.691 45.455 13.93 0.30 0.00 3.33
1004 1029 3.952323 ACTACTCCGCTAGCTAATTGTGA 59.048 43.478 13.93 0.00 0.00 3.58
1024 4501 1.080093 CAAACCGCGAGCTCTACCA 60.080 57.895 8.23 0.00 0.00 3.25
1026 4503 2.814183 AAACCGCGAGCTCTACCACG 62.814 60.000 8.23 7.48 0.00 4.94
1033 4510 2.186076 CGAGCTCTACCACGTTCATTC 58.814 52.381 12.85 0.00 0.00 2.67
1034 4511 2.541556 GAGCTCTACCACGTTCATTCC 58.458 52.381 6.43 0.00 0.00 3.01
1286 11700 0.899720 GGTCCCGTCATGTACCTGAA 59.100 55.000 2.11 0.00 0.00 3.02
1562 11985 2.045926 GCGTGCCATCCTTGAGGT 60.046 61.111 0.00 0.00 36.34 3.85
1602 12034 2.125512 GTCGTGCCGGAGATGCTT 60.126 61.111 5.05 0.00 0.00 3.91
2076 13593 1.964373 GTTGGTGGAATGCGACGGT 60.964 57.895 0.00 0.00 0.00 4.83
2127 13666 4.577283 TGACTTAAGCAACCAAACCACTAC 59.423 41.667 1.29 0.00 0.00 2.73
2128 13667 4.788679 ACTTAAGCAACCAAACCACTACT 58.211 39.130 1.29 0.00 0.00 2.57
2166 13705 3.679980 GCACTAATTTCTTCTGCTGACGA 59.320 43.478 0.00 0.00 0.00 4.20
2186 13725 4.806247 ACGAGTTTGCATTAGCTGACTATC 59.194 41.667 0.00 0.00 42.74 2.08
2187 13726 5.046529 CGAGTTTGCATTAGCTGACTATCT 58.953 41.667 0.00 0.00 42.74 1.98
2193 13732 6.825944 TGCATTAGCTGACTATCTACTAGG 57.174 41.667 0.00 0.00 42.74 3.02
2268 13808 6.777580 CCATATGGTTAGACAAGGGCTAAAAT 59.222 38.462 14.09 0.00 30.34 1.82
2271 13811 4.020039 TGGTTAGACAAGGGCTAAAATCGA 60.020 41.667 0.00 0.00 30.34 3.59
2311 13851 0.753479 TTTGAAAACTGGGCGAGCCA 60.753 50.000 16.65 1.48 37.98 4.75
2312 13852 1.172180 TTGAAAACTGGGCGAGCCAG 61.172 55.000 16.65 13.06 40.72 4.85
2319 13859 2.747855 GGGCGAGCCAGTTTCCTG 60.748 66.667 16.65 0.00 37.98 3.86
2330 13870 1.898472 CAGTTTCCTGGAGCAGAGAGA 59.102 52.381 0.00 0.00 34.90 3.10
2331 13871 2.094078 CAGTTTCCTGGAGCAGAGAGAG 60.094 54.545 0.00 0.00 34.90 3.20
2333 13873 2.142356 TTCCTGGAGCAGAGAGAGAG 57.858 55.000 0.00 0.00 32.44 3.20
2334 13874 1.294041 TCCTGGAGCAGAGAGAGAGA 58.706 55.000 0.00 0.00 32.44 3.10
2336 13876 1.958579 CCTGGAGCAGAGAGAGAGATG 59.041 57.143 0.00 0.00 32.44 2.90
2337 13877 1.338973 CTGGAGCAGAGAGAGAGATGC 59.661 57.143 0.00 0.00 38.97 3.91
2338 13878 1.341778 TGGAGCAGAGAGAGAGATGCA 60.342 52.381 0.00 0.00 41.14 3.96
2339 13879 1.338973 GGAGCAGAGAGAGAGATGCAG 59.661 57.143 0.00 0.00 41.14 4.41
2340 13880 1.338973 GAGCAGAGAGAGAGATGCAGG 59.661 57.143 0.00 0.00 41.14 4.85
2341 13881 0.390124 GCAGAGAGAGAGATGCAGGG 59.610 60.000 0.00 0.00 38.54 4.45
2343 13883 0.105555 AGAGAGAGAGATGCAGGGGG 60.106 60.000 0.00 0.00 0.00 5.40
2345 13885 0.105555 AGAGAGAGATGCAGGGGGAG 60.106 60.000 0.00 0.00 0.00 4.30
2346 13886 0.105760 GAGAGAGATGCAGGGGGAGA 60.106 60.000 0.00 0.00 0.00 3.71
2350 13890 1.757423 GAGATGCAGGGGGAGAGAGC 61.757 65.000 0.00 0.00 0.00 4.09
2351 13891 3.160047 ATGCAGGGGGAGAGAGCG 61.160 66.667 0.00 0.00 0.00 5.03
2355 13895 4.722535 AGGGGGAGAGAGCGGCAA 62.723 66.667 1.45 0.00 0.00 4.52
2356 13896 4.475135 GGGGGAGAGAGCGGCAAC 62.475 72.222 1.45 0.00 0.00 4.17
2357 13897 4.475135 GGGGAGAGAGCGGCAACC 62.475 72.222 1.45 0.00 0.00 3.77
2369 13909 3.414700 GCAACCGTGCCAGACTCG 61.415 66.667 0.00 0.00 45.68 4.18
2418 14030 0.464452 GGATGGGTCCGACCAGTTAG 59.536 60.000 19.43 0.00 45.20 2.34
2482 15785 2.736721 GCAACTGTATGACTGCTTTCGA 59.263 45.455 0.00 0.00 0.00 3.71
2483 15786 3.372206 GCAACTGTATGACTGCTTTCGAT 59.628 43.478 0.00 0.00 0.00 3.59
2485 15788 2.932614 ACTGTATGACTGCTTTCGATGC 59.067 45.455 4.25 4.25 0.00 3.91
2486 15789 2.931969 CTGTATGACTGCTTTCGATGCA 59.068 45.455 12.07 12.07 38.81 3.96
2518 15821 5.221461 ACCCAAACATATTGTGGCGTTTTTA 60.221 36.000 0.00 0.00 29.40 1.52
2787 16478 1.652563 GGTGAACACCGGAACAAGC 59.347 57.895 9.46 0.00 42.29 4.01
2794 16485 3.134574 ACACCGGAACAAGCTAAATGA 57.865 42.857 9.46 0.00 0.00 2.57
2847 16538 1.609208 AGTGCGCTCCAAAACAGAAT 58.391 45.000 9.73 0.00 0.00 2.40
2854 16545 3.243367 CGCTCCAAAACAGAATGAAACCA 60.243 43.478 0.00 0.00 39.69 3.67
2888 16579 4.633565 GTCTGAGGACAATTGGAAGACATC 59.366 45.833 10.83 3.95 41.75 3.06
2911 16611 0.106519 ACTTTGTGGCACCAAGCTCT 60.107 50.000 26.13 8.89 44.79 4.09
2916 16616 1.630369 TGTGGCACCAAGCTCTAGATT 59.370 47.619 16.26 0.00 44.79 2.40
2924 16625 3.062763 CCAAGCTCTAGATTATGTGCCG 58.937 50.000 0.00 0.00 0.00 5.69
2944 16645 3.133003 CCGGTGGACAGAAATATGAGACT 59.867 47.826 0.00 0.00 0.00 3.24
3003 16704 2.292267 ACTGGTTGAAGCACACTGAAG 58.708 47.619 0.00 0.00 0.00 3.02
3023 16724 7.701924 ACTGAAGTACAATGAAACATTGTTGTG 59.298 33.333 26.94 16.61 41.81 3.33
3049 16750 7.680113 GCGCATAAAGTAAAAATAGGGTAGCAA 60.680 37.037 0.30 0.00 0.00 3.91
3163 16872 3.897239 ACATTGTGGTGAACTCTGGAAA 58.103 40.909 0.00 0.00 0.00 3.13
3517 17540 6.662755 AGATTACATAGCAATCTCCCACAAA 58.337 36.000 0.00 0.00 38.11 2.83
3518 17541 7.293073 AGATTACATAGCAATCTCCCACAAAT 58.707 34.615 0.00 0.00 38.11 2.32
3519 17542 6.698008 TTACATAGCAATCTCCCACAAATG 57.302 37.500 0.00 0.00 0.00 2.32
3520 17543 4.603131 ACATAGCAATCTCCCACAAATGT 58.397 39.130 0.00 0.00 0.00 2.71
3521 17544 4.400251 ACATAGCAATCTCCCACAAATGTG 59.600 41.667 6.57 6.57 45.23 3.21
3524 17547 1.135315 CAATCTCCCACAAATGTGCGG 60.135 52.381 8.03 10.53 44.34 5.69
3529 17552 0.958091 CCCACAAATGTGCGGAGAAA 59.042 50.000 8.03 0.00 44.34 2.52
3530 17553 1.335872 CCCACAAATGTGCGGAGAAAC 60.336 52.381 8.03 0.00 44.34 2.78
3691 17745 3.713968 GCGAAAACACTTAACGCGA 57.286 47.368 15.93 0.00 39.90 5.87
3710 17772 3.670627 GCGAAGTAGCACTTGGGATTTTG 60.671 47.826 6.31 0.00 38.80 2.44
3731 17797 0.238817 TTTAAACCCGTGCGTGCATC 59.761 50.000 0.00 0.00 0.00 3.91
3864 17930 1.081041 CCGTGTCATCGGTCGTGAA 60.081 57.895 5.89 0.00 44.77 3.18
4203 18269 1.754234 GATGCTGGCCGGAATGGTT 60.754 57.895 18.31 0.00 41.21 3.67
4270 18336 1.739049 CTGCCAGACGGAGAGGATC 59.261 63.158 0.00 0.00 0.00 3.36
4355 18421 4.500265 GCCAAGGCTTGTTCCAGA 57.500 55.556 24.57 0.00 38.26 3.86
4374 18440 4.142622 CCAGACGCATACACATGATTGTTT 60.143 41.667 0.00 0.00 32.34 2.83
4375 18441 5.064579 CCAGACGCATACACATGATTGTTTA 59.935 40.000 0.00 0.00 32.34 2.01
4518 18584 9.010029 CCTCACAAAATAAAACATGTACCTACT 57.990 33.333 0.00 0.00 0.00 2.57
4624 18690 0.536460 GGAAACAGGTTCCGGAAGCA 60.536 55.000 39.30 9.89 46.51 3.91
4632 18698 0.966179 GTTCCGGAAGCATTTTGGGT 59.034 50.000 19.50 0.00 0.00 4.51
4783 18853 2.224793 GGCTACTCCTCCAAGTTGGTTT 60.225 50.000 21.35 5.44 39.03 3.27
4787 18857 0.481128 TCCTCCAAGTTGGTTTCCCC 59.519 55.000 21.35 0.00 39.03 4.81
4814 18884 1.145738 TCCTCCTGCTGGAAAGCTTTT 59.854 47.619 14.05 0.00 42.66 2.27
4816 18886 2.512705 CTCCTGCTGGAAAGCTTTTCT 58.487 47.619 18.32 0.00 42.66 2.52
4824 18941 4.074970 CTGGAAAGCTTTTCTGAGGCTTA 58.925 43.478 18.32 0.00 44.17 3.09
4832 18949 5.653769 AGCTTTTCTGAGGCTTATTTATGCA 59.346 36.000 0.00 0.00 31.81 3.96
4881 18998 2.032620 ACTTCTGGACGTGTCAGTCTT 58.967 47.619 13.19 0.00 40.76 3.01
4988 19145 1.083806 TGTTCGCCGATCATGCTGAC 61.084 55.000 0.00 0.00 0.00 3.51
5028 19185 3.391626 AGTCCTTTCCCGAGTTCTTTCTT 59.608 43.478 0.00 0.00 0.00 2.52
5049 19206 1.442769 CATGTACTCGGCAAAGTGCT 58.557 50.000 0.00 0.00 44.28 4.40
5073 19230 6.179756 TGAATTTGCTGAATGCTAGGTCTTA 58.820 36.000 0.00 0.00 43.37 2.10
5074 19231 6.830324 TGAATTTGCTGAATGCTAGGTCTTAT 59.170 34.615 0.00 0.00 43.37 1.73
5077 19234 3.071602 TGCTGAATGCTAGGTCTTATCCC 59.928 47.826 0.00 0.00 43.37 3.85
5179 19341 4.022849 GCTTTCTTTTGCTTTGCCTAGAGA 60.023 41.667 0.00 0.00 0.00 3.10
5377 19954 6.480524 TTCTGTCCAAATACATGTCTTTCG 57.519 37.500 0.00 0.00 0.00 3.46
5516 20093 5.536916 GTGGTAGAGCCTTAGATCAGTACAT 59.463 44.000 0.00 0.00 38.35 2.29
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 1.830279 AATCTAGGACACCGTCACGA 58.170 50.000 0.00 0.00 33.68 4.35
6 7 3.799232 GCCATAATCTAGGACACCGTCAC 60.799 52.174 0.00 0.00 33.68 3.67
9 10 2.679082 AGCCATAATCTAGGACACCGT 58.321 47.619 0.00 0.00 0.00 4.83
10 11 3.827302 AGTAGCCATAATCTAGGACACCG 59.173 47.826 0.00 0.00 0.00 4.94
11 12 4.833380 TGAGTAGCCATAATCTAGGACACC 59.167 45.833 0.00 0.00 0.00 4.16
12 13 5.279056 GGTGAGTAGCCATAATCTAGGACAC 60.279 48.000 0.00 0.00 0.00 3.67
13 14 4.833380 GGTGAGTAGCCATAATCTAGGACA 59.167 45.833 0.00 0.00 0.00 4.02
14 15 4.833380 TGGTGAGTAGCCATAATCTAGGAC 59.167 45.833 0.00 0.00 0.00 3.85
15 16 4.833380 GTGGTGAGTAGCCATAATCTAGGA 59.167 45.833 0.00 0.00 38.40 2.94
16 17 4.321304 CGTGGTGAGTAGCCATAATCTAGG 60.321 50.000 0.00 0.00 38.40 3.02
17 18 4.278669 ACGTGGTGAGTAGCCATAATCTAG 59.721 45.833 0.00 0.00 38.40 2.43
18 19 4.212716 ACGTGGTGAGTAGCCATAATCTA 58.787 43.478 0.00 0.00 38.40 1.98
19 20 3.031736 ACGTGGTGAGTAGCCATAATCT 58.968 45.455 0.00 0.00 38.40 2.40
20 21 3.181479 TGACGTGGTGAGTAGCCATAATC 60.181 47.826 0.00 0.00 38.40 1.75
21 22 2.764010 TGACGTGGTGAGTAGCCATAAT 59.236 45.455 0.00 0.00 38.40 1.28
22 23 2.172679 TGACGTGGTGAGTAGCCATAA 58.827 47.619 0.00 0.00 38.40 1.90
23 24 1.842052 TGACGTGGTGAGTAGCCATA 58.158 50.000 0.00 0.00 38.40 2.74
24 25 1.137086 GATGACGTGGTGAGTAGCCAT 59.863 52.381 0.00 0.00 38.40 4.40
25 26 0.530744 GATGACGTGGTGAGTAGCCA 59.469 55.000 0.00 0.00 0.00 4.75
26 27 0.818296 AGATGACGTGGTGAGTAGCC 59.182 55.000 0.00 0.00 0.00 3.93
27 28 2.223525 GGTAGATGACGTGGTGAGTAGC 60.224 54.545 0.00 0.00 0.00 3.58
28 29 2.031807 CGGTAGATGACGTGGTGAGTAG 59.968 54.545 0.00 0.00 0.00 2.57
29 30 2.011947 CGGTAGATGACGTGGTGAGTA 58.988 52.381 0.00 0.00 0.00 2.59
30 31 0.809385 CGGTAGATGACGTGGTGAGT 59.191 55.000 0.00 0.00 0.00 3.41
31 32 1.092348 TCGGTAGATGACGTGGTGAG 58.908 55.000 0.00 0.00 0.00 3.51
32 33 0.806868 GTCGGTAGATGACGTGGTGA 59.193 55.000 0.00 0.00 0.00 4.02
33 34 0.179145 GGTCGGTAGATGACGTGGTG 60.179 60.000 0.00 0.00 37.22 4.17
34 35 0.609957 TGGTCGGTAGATGACGTGGT 60.610 55.000 0.00 0.00 37.22 4.16
35 36 0.100682 CTGGTCGGTAGATGACGTGG 59.899 60.000 0.00 0.00 37.22 4.94
36 37 0.100682 CCTGGTCGGTAGATGACGTG 59.899 60.000 0.00 0.00 37.22 4.49
37 38 0.323178 ACCTGGTCGGTAGATGACGT 60.323 55.000 0.00 0.00 46.73 4.34
38 39 0.100682 CACCTGGTCGGTAGATGACG 59.899 60.000 0.00 0.00 46.94 4.35
39 40 0.460311 CCACCTGGTCGGTAGATGAC 59.540 60.000 0.00 0.00 46.94 3.06
40 41 0.333652 TCCACCTGGTCGGTAGATGA 59.666 55.000 12.89 0.00 46.94 2.92
41 42 1.341531 GATCCACCTGGTCGGTAGATG 59.658 57.143 12.89 0.00 46.94 2.90
42 43 1.705873 GATCCACCTGGTCGGTAGAT 58.294 55.000 12.89 4.50 46.94 1.98
43 44 0.750546 CGATCCACCTGGTCGGTAGA 60.751 60.000 12.89 0.33 46.94 2.59
44 45 1.734137 CGATCCACCTGGTCGGTAG 59.266 63.158 12.89 0.00 46.94 3.18
45 46 1.755395 CCGATCCACCTGGTCGGTA 60.755 63.158 19.27 4.11 46.94 4.02
48 49 4.530857 GCCCGATCCACCTGGTCG 62.531 72.222 0.00 0.00 37.97 4.79
49 50 4.176752 GGCCCGATCCACCTGGTC 62.177 72.222 0.00 0.00 36.34 4.02
52 53 4.227134 CTCGGCCCGATCCACCTG 62.227 72.222 6.16 0.00 34.61 4.00
55 56 4.222847 GTCCTCGGCCCGATCCAC 62.223 72.222 6.16 0.00 34.61 4.02
64 65 4.864334 CTGCATGGGGTCCTCGGC 62.864 72.222 0.00 0.00 0.00 5.54
65 66 4.864334 GCTGCATGGGGTCCTCGG 62.864 72.222 0.00 0.00 0.00 4.63
66 67 3.746949 GAGCTGCATGGGGTCCTCG 62.747 68.421 1.02 0.00 0.00 4.63
67 68 2.191641 GAGCTGCATGGGGTCCTC 59.808 66.667 1.02 0.00 0.00 3.71
68 69 3.790437 CGAGCTGCATGGGGTCCT 61.790 66.667 1.02 0.00 0.00 3.85
89 90 3.515316 AACGGGTCGGTGCACAGAG 62.515 63.158 20.38 11.20 0.00 3.35
90 91 3.509137 GAACGGGTCGGTGCACAGA 62.509 63.158 20.43 18.20 0.00 3.41
91 92 3.041940 GAACGGGTCGGTGCACAG 61.042 66.667 20.43 15.76 0.00 3.66
92 93 3.171828 ATGAACGGGTCGGTGCACA 62.172 57.895 20.43 0.00 0.00 4.57
93 94 2.358247 ATGAACGGGTCGGTGCAC 60.358 61.111 8.80 8.80 0.00 4.57
94 95 2.178876 ATCATGAACGGGTCGGTGCA 62.179 55.000 0.00 0.00 0.00 4.57
95 96 0.179094 TATCATGAACGGGTCGGTGC 60.179 55.000 0.00 0.00 0.00 5.01
96 97 2.135139 CATATCATGAACGGGTCGGTG 58.865 52.381 0.00 0.00 0.00 4.94
97 98 1.760613 ACATATCATGAACGGGTCGGT 59.239 47.619 0.00 0.00 0.00 4.69
98 99 2.526304 ACATATCATGAACGGGTCGG 57.474 50.000 0.00 0.00 0.00 4.79
99 100 2.032894 GCAACATATCATGAACGGGTCG 60.033 50.000 0.00 0.00 0.00 4.79
100 101 2.942376 TGCAACATATCATGAACGGGTC 59.058 45.455 0.00 0.00 0.00 4.46
101 102 2.945008 CTGCAACATATCATGAACGGGT 59.055 45.455 0.00 0.00 0.00 5.28
102 103 2.287188 GCTGCAACATATCATGAACGGG 60.287 50.000 0.00 0.00 0.00 5.28
103 104 2.615447 AGCTGCAACATATCATGAACGG 59.385 45.455 0.00 0.00 0.00 4.44
104 105 3.957671 AGCTGCAACATATCATGAACG 57.042 42.857 0.00 0.00 0.00 3.95
105 106 4.337555 AGGAAGCTGCAACATATCATGAAC 59.662 41.667 0.00 0.00 0.00 3.18
106 107 4.337274 CAGGAAGCTGCAACATATCATGAA 59.663 41.667 0.00 0.00 0.00 2.57
107 108 3.881089 CAGGAAGCTGCAACATATCATGA 59.119 43.478 1.02 0.00 0.00 3.07
108 109 3.630769 ACAGGAAGCTGCAACATATCATG 59.369 43.478 1.02 0.00 0.00 3.07
109 110 3.630769 CACAGGAAGCTGCAACATATCAT 59.369 43.478 1.02 0.00 0.00 2.45
110 111 3.011818 CACAGGAAGCTGCAACATATCA 58.988 45.455 1.02 0.00 0.00 2.15
111 112 2.223433 GCACAGGAAGCTGCAACATATC 60.223 50.000 1.02 0.00 33.31 1.63
112 113 1.747355 GCACAGGAAGCTGCAACATAT 59.253 47.619 1.02 0.00 33.31 1.78
113 114 1.167851 GCACAGGAAGCTGCAACATA 58.832 50.000 1.02 0.00 33.31 2.29
114 115 1.530013 GGCACAGGAAGCTGCAACAT 61.530 55.000 1.02 0.00 34.90 2.71
115 116 2.195567 GGCACAGGAAGCTGCAACA 61.196 57.895 1.02 0.00 34.90 3.33
116 117 1.860484 GAGGCACAGGAAGCTGCAAC 61.860 60.000 1.02 0.00 34.90 4.17
117 118 1.601759 GAGGCACAGGAAGCTGCAA 60.602 57.895 1.02 0.00 34.90 4.08
118 119 2.033141 GAGGCACAGGAAGCTGCA 59.967 61.111 1.02 0.00 34.90 4.41
119 120 0.036010 TAAGAGGCACAGGAAGCTGC 60.036 55.000 0.00 0.00 0.00 5.25
120 121 1.277557 AGTAAGAGGCACAGGAAGCTG 59.722 52.381 0.00 0.00 0.00 4.24
121 122 1.552792 GAGTAAGAGGCACAGGAAGCT 59.447 52.381 0.00 0.00 0.00 3.74
122 123 1.406205 GGAGTAAGAGGCACAGGAAGC 60.406 57.143 0.00 0.00 0.00 3.86
123 124 1.902508 TGGAGTAAGAGGCACAGGAAG 59.097 52.381 0.00 0.00 0.00 3.46
124 125 1.902508 CTGGAGTAAGAGGCACAGGAA 59.097 52.381 0.00 0.00 0.00 3.36
125 126 1.561643 CTGGAGTAAGAGGCACAGGA 58.438 55.000 0.00 0.00 0.00 3.86
126 127 0.107945 GCTGGAGTAAGAGGCACAGG 60.108 60.000 0.00 0.00 0.00 4.00
127 128 0.901124 AGCTGGAGTAAGAGGCACAG 59.099 55.000 0.00 0.00 0.00 3.66
128 129 0.898320 GAGCTGGAGTAAGAGGCACA 59.102 55.000 0.00 0.00 0.00 4.57
129 130 0.179124 CGAGCTGGAGTAAGAGGCAC 60.179 60.000 0.00 0.00 0.00 5.01
130 131 1.949847 GCGAGCTGGAGTAAGAGGCA 61.950 60.000 0.00 0.00 0.00 4.75
131 132 1.227118 GCGAGCTGGAGTAAGAGGC 60.227 63.158 0.00 0.00 0.00 4.70
132 133 0.383949 GAGCGAGCTGGAGTAAGAGG 59.616 60.000 0.84 0.00 0.00 3.69
133 134 0.383949 GGAGCGAGCTGGAGTAAGAG 59.616 60.000 0.84 0.00 0.00 2.85
134 135 1.377366 CGGAGCGAGCTGGAGTAAGA 61.377 60.000 0.84 0.00 0.00 2.10
135 136 1.064946 CGGAGCGAGCTGGAGTAAG 59.935 63.158 0.84 0.00 0.00 2.34
136 137 3.197614 CGGAGCGAGCTGGAGTAA 58.802 61.111 0.84 0.00 0.00 2.24
224 227 0.538584 TCCTGCCTGCATCTAGTGTG 59.461 55.000 0.00 0.00 0.00 3.82
322 328 6.504398 TGACGATATCTAAGGTTGTGATCAC 58.496 40.000 19.27 19.27 0.00 3.06
330 336 9.574458 CGAATAATCATGACGATATCTAAGGTT 57.426 33.333 0.00 0.00 32.51 3.50
331 337 7.702772 GCGAATAATCATGACGATATCTAAGGT 59.297 37.037 0.00 0.00 32.51 3.50
571 591 3.593442 AAGGTTGTCAATCCCTTCACA 57.407 42.857 2.34 0.00 33.27 3.58
590 610 4.386867 TTTGCACCCAACGTGATAAAAA 57.613 36.364 0.00 0.00 46.20 1.94
620 641 2.819019 CCATCATAACACCTGCACACAA 59.181 45.455 0.00 0.00 0.00 3.33
640 661 2.135933 CGAGAAACACACAAGTCTCCC 58.864 52.381 0.00 0.00 34.28 4.30
660 681 7.462571 AAAAACCAAGGTATGAATCCAGTAC 57.537 36.000 0.00 0.00 0.00 2.73
670 691 7.444183 TCTCACTCAGTTAAAAACCAAGGTATG 59.556 37.037 0.00 0.00 0.00 2.39
713 735 5.830000 TGAAGAGAAAAGGATGATGCATG 57.170 39.130 2.46 0.00 0.00 4.06
722 744 7.846066 TGGTTTTTCATTTGAAGAGAAAAGGA 58.154 30.769 0.00 0.00 40.87 3.36
737 760 4.647424 TGAGCTTTCGTTGGTTTTTCAT 57.353 36.364 0.00 0.00 0.00 2.57
777 800 1.372997 CGAGTCACCCACCTGAACG 60.373 63.158 0.00 0.00 0.00 3.95
801 824 4.593956 GGATTATGATTGGGCTTAGGGAG 58.406 47.826 0.00 0.00 0.00 4.30
819 842 3.119495 GCTTAAGTCAAACATGGCGGATT 60.119 43.478 4.02 0.00 0.00 3.01
857 880 8.106348 CGATTCCTACACATAAAGTTAAACGTC 58.894 37.037 0.00 0.00 0.00 4.34
862 885 7.814107 ACGAACGATTCCTACACATAAAGTTAA 59.186 33.333 0.14 0.00 0.00 2.01
863 886 7.315142 ACGAACGATTCCTACACATAAAGTTA 58.685 34.615 0.14 0.00 0.00 2.24
864 887 6.161381 ACGAACGATTCCTACACATAAAGTT 58.839 36.000 0.14 0.00 0.00 2.66
865 888 5.717119 ACGAACGATTCCTACACATAAAGT 58.283 37.500 0.14 0.00 0.00 2.66
866 889 7.487189 ACTTACGAACGATTCCTACACATAAAG 59.513 37.037 0.14 0.00 0.00 1.85
867 890 7.315142 ACTTACGAACGATTCCTACACATAAA 58.685 34.615 0.14 0.00 0.00 1.40
868 891 6.855836 ACTTACGAACGATTCCTACACATAA 58.144 36.000 0.14 0.00 0.00 1.90
869 892 6.441093 ACTTACGAACGATTCCTACACATA 57.559 37.500 0.14 0.00 0.00 2.29
870 893 5.320549 ACTTACGAACGATTCCTACACAT 57.679 39.130 0.14 0.00 0.00 3.21
871 894 4.771590 ACTTACGAACGATTCCTACACA 57.228 40.909 0.14 0.00 0.00 3.72
872 895 8.125448 AGTAATACTTACGAACGATTCCTACAC 58.875 37.037 0.14 0.00 41.01 2.90
873 896 8.213518 AGTAATACTTACGAACGATTCCTACA 57.786 34.615 0.14 0.00 41.01 2.74
874 897 7.528850 CGAGTAATACTTACGAACGATTCCTAC 59.471 40.741 0.14 0.00 41.01 3.18
875 898 7.224753 ACGAGTAATACTTACGAACGATTCCTA 59.775 37.037 8.24 0.00 41.01 2.94
876 899 6.037610 ACGAGTAATACTTACGAACGATTCCT 59.962 38.462 8.24 0.00 41.01 3.36
877 900 6.195165 ACGAGTAATACTTACGAACGATTCC 58.805 40.000 8.24 0.00 41.01 3.01
878 901 7.426456 TCAACGAGTAATACTTACGAACGATTC 59.574 37.037 8.24 0.00 41.01 2.52
879 902 7.243487 TCAACGAGTAATACTTACGAACGATT 58.757 34.615 8.24 0.00 41.01 3.34
880 903 6.775088 TCAACGAGTAATACTTACGAACGAT 58.225 36.000 8.24 0.00 41.01 3.73
881 904 6.164408 TCAACGAGTAATACTTACGAACGA 57.836 37.500 8.24 0.41 41.01 3.85
882 905 6.837307 TTCAACGAGTAATACTTACGAACG 57.163 37.500 8.24 2.61 41.01 3.95
885 908 8.649841 CCAAATTTCAACGAGTAATACTTACGA 58.350 33.333 8.24 0.00 41.01 3.43
886 909 7.424452 GCCAAATTTCAACGAGTAATACTTACG 59.576 37.037 0.00 0.00 41.01 3.18
887 910 8.231837 TGCCAAATTTCAACGAGTAATACTTAC 58.768 33.333 0.00 0.00 36.38 2.34
888 911 8.325421 TGCCAAATTTCAACGAGTAATACTTA 57.675 30.769 0.00 0.00 0.00 2.24
889 912 7.209471 TGCCAAATTTCAACGAGTAATACTT 57.791 32.000 0.00 0.00 0.00 2.24
890 913 6.811253 TGCCAAATTTCAACGAGTAATACT 57.189 33.333 0.00 0.00 0.00 2.12
891 914 8.178964 TGTATGCCAAATTTCAACGAGTAATAC 58.821 33.333 0.00 0.00 0.00 1.89
892 915 8.270080 TGTATGCCAAATTTCAACGAGTAATA 57.730 30.769 0.00 0.00 0.00 0.98
893 916 7.151999 TGTATGCCAAATTTCAACGAGTAAT 57.848 32.000 0.00 0.00 0.00 1.89
894 917 6.561737 TGTATGCCAAATTTCAACGAGTAA 57.438 33.333 0.00 0.00 0.00 2.24
895 918 6.751514 ATGTATGCCAAATTTCAACGAGTA 57.248 33.333 0.00 0.00 0.00 2.59
896 919 5.643379 ATGTATGCCAAATTTCAACGAGT 57.357 34.783 0.00 0.00 0.00 4.18
897 920 8.131100 AGATTATGTATGCCAAATTTCAACGAG 58.869 33.333 0.00 0.00 0.00 4.18
898 921 7.914871 CAGATTATGTATGCCAAATTTCAACGA 59.085 33.333 0.00 0.00 0.00 3.85
899 922 7.914871 TCAGATTATGTATGCCAAATTTCAACG 59.085 33.333 0.00 0.00 0.00 4.10
900 923 9.585099 TTCAGATTATGTATGCCAAATTTCAAC 57.415 29.630 0.00 0.00 0.00 3.18
934 959 3.942829 ACATGGATCCGCTTATGTATGG 58.057 45.455 12.53 0.00 32.41 2.74
958 983 8.786898 AGTATTTCGTAACGTTATATAGCAGGA 58.213 33.333 11.86 0.00 0.00 3.86
959 984 8.961294 AGTATTTCGTAACGTTATATAGCAGG 57.039 34.615 11.86 0.00 0.00 4.85
972 997 4.908730 GCTAGCGGAGTAGTATTTCGTAAC 59.091 45.833 0.00 0.00 0.00 2.50
999 1024 1.092921 AGCTCGCGGTTTGTTCACAA 61.093 50.000 6.13 0.00 0.00 3.33
1002 1027 0.315886 TAGAGCTCGCGGTTTGTTCA 59.684 50.000 6.13 0.00 0.00 3.18
1003 1028 0.714439 GTAGAGCTCGCGGTTTGTTC 59.286 55.000 6.13 2.22 0.00 3.18
1004 1029 0.669625 GGTAGAGCTCGCGGTTTGTT 60.670 55.000 6.13 0.00 0.00 2.83
1024 4501 3.393800 CTGTGTGAAGAGGAATGAACGT 58.606 45.455 0.00 0.00 0.00 3.99
1026 4503 2.158449 CGCTGTGTGAAGAGGAATGAAC 59.842 50.000 0.00 0.00 0.00 3.18
1033 4510 3.782244 GCGCGCTGTGTGAAGAGG 61.782 66.667 26.67 0.00 0.00 3.69
1034 4511 4.126390 CGCGCGCTGTGTGAAGAG 62.126 66.667 30.48 5.07 0.00 2.85
1392 11806 1.063649 CCCGTACGACATGTCCTCG 59.936 63.158 18.76 19.13 37.17 4.63
1804 12236 2.126031 GAGCCCGTCGAACTGGAC 60.126 66.667 0.00 0.00 0.00 4.02
1988 12442 5.153950 AGAACAAGATGGAAGTGTAGACC 57.846 43.478 0.00 0.00 0.00 3.85
1990 12444 6.183360 TGTTGAGAACAAGATGGAAGTGTAGA 60.183 38.462 0.00 0.00 38.72 2.59
2127 13666 2.158813 AGTGCACCCCGTGGATTAATAG 60.159 50.000 14.63 0.00 36.11 1.73
2128 13667 1.841277 AGTGCACCCCGTGGATTAATA 59.159 47.619 14.63 0.00 36.11 0.98
2166 13705 7.118496 AGTAGATAGTCAGCTAATGCAAACT 57.882 36.000 0.00 0.00 42.74 2.66
2186 13725 8.678199 TGACGCATCATAGATATTTCCTAGTAG 58.322 37.037 0.00 0.00 0.00 2.57
2187 13726 8.575649 TGACGCATCATAGATATTTCCTAGTA 57.424 34.615 0.00 0.00 0.00 1.82
2193 13732 8.871742 GTCAATTGACGCATCATAGATATTTC 57.128 34.615 22.09 0.00 35.12 2.17
2268 13808 6.507958 TTTGCTCCATATTTCAAACATCGA 57.492 33.333 0.00 0.00 0.00 3.59
2271 13811 9.504708 TTCAAATTTGCTCCATATTTCAAACAT 57.495 25.926 13.54 0.00 32.17 2.71
2311 13851 2.178580 CTCTCTCTGCTCCAGGAAACT 58.821 52.381 0.00 0.00 46.44 2.66
2312 13852 2.166254 CTCTCTCTCTGCTCCAGGAAAC 59.834 54.545 0.00 0.00 31.51 2.78
2315 13855 1.294041 TCTCTCTCTCTGCTCCAGGA 58.706 55.000 0.00 0.00 31.51 3.86
2319 13859 1.338973 CTGCATCTCTCTCTCTGCTCC 59.661 57.143 0.00 0.00 35.66 4.70
2324 13864 0.105555 CCCCCTGCATCTCTCTCTCT 60.106 60.000 0.00 0.00 0.00 3.10
2326 13866 0.105555 CTCCCCCTGCATCTCTCTCT 60.106 60.000 0.00 0.00 0.00 3.10
2327 13867 0.105760 TCTCCCCCTGCATCTCTCTC 60.106 60.000 0.00 0.00 0.00 3.20
2330 13870 0.105555 CTCTCTCCCCCTGCATCTCT 60.106 60.000 0.00 0.00 0.00 3.10
2331 13871 1.757423 GCTCTCTCCCCCTGCATCTC 61.757 65.000 0.00 0.00 0.00 2.75
2333 13873 2.828145 GCTCTCTCCCCCTGCATC 59.172 66.667 0.00 0.00 0.00 3.91
2334 13874 3.160047 CGCTCTCTCCCCCTGCAT 61.160 66.667 0.00 0.00 0.00 3.96
2338 13878 4.722535 TTGCCGCTCTCTCCCCCT 62.723 66.667 0.00 0.00 0.00 4.79
2339 13879 4.475135 GTTGCCGCTCTCTCCCCC 62.475 72.222 0.00 0.00 0.00 5.40
2340 13880 4.475135 GGTTGCCGCTCTCTCCCC 62.475 72.222 0.00 0.00 0.00 4.81
2341 13881 4.821589 CGGTTGCCGCTCTCTCCC 62.822 72.222 0.00 0.00 41.17 4.30
2353 13893 2.029073 ACGAGTCTGGCACGGTTG 59.971 61.111 3.87 0.00 35.51 3.77
2354 13894 2.029073 CACGAGTCTGGCACGGTT 59.971 61.111 3.87 0.00 35.51 4.44
2355 13895 3.991051 CCACGAGTCTGGCACGGT 61.991 66.667 3.87 0.00 35.51 4.83
2361 13901 0.532862 AAACAGTGCCACGAGTCTGG 60.533 55.000 0.00 4.71 32.92 3.86
2362 13902 1.299541 AAAACAGTGCCACGAGTCTG 58.700 50.000 0.00 0.00 0.00 3.51
2363 13903 2.038387 AAAAACAGTGCCACGAGTCT 57.962 45.000 0.00 0.00 0.00 3.24
2418 14030 6.984740 TGTTAATTGCTTTGATGACGTTTC 57.015 33.333 0.00 0.00 0.00 2.78
2474 15777 1.946081 TGACAAACTGCATCGAAAGCA 59.054 42.857 14.16 14.16 40.19 3.91
2475 15778 2.310577 GTGACAAACTGCATCGAAAGC 58.689 47.619 6.29 6.29 0.00 3.51
2476 15779 2.350772 GGGTGACAAACTGCATCGAAAG 60.351 50.000 0.00 0.00 0.00 2.62
2656 16346 6.553100 TGGGGAGAAAAGTAACATGTTCAAAT 59.447 34.615 15.85 0.00 0.00 2.32
2668 16358 9.447279 TTCTAAGATATCATGGGGAGAAAAGTA 57.553 33.333 5.32 0.00 0.00 2.24
2753 16444 7.383572 CGGTGTTCACCATAAAATTTCATTGAA 59.616 33.333 19.90 0.00 0.00 2.69
2754 16445 6.865726 CGGTGTTCACCATAAAATTTCATTGA 59.134 34.615 19.90 0.00 0.00 2.57
2787 16478 4.242475 TGAGTGTGCTACCGTTCATTTAG 58.758 43.478 0.00 0.00 0.00 1.85
2794 16485 3.671008 TTGTATGAGTGTGCTACCGTT 57.329 42.857 0.00 0.00 0.00 4.44
2854 16545 5.930837 TTGTCCTCAGACCAATTTTGTTT 57.069 34.783 0.00 0.00 42.81 2.83
2888 16579 1.665169 GCTTGGTGCCACAAAGTTTTG 59.335 47.619 13.38 3.17 38.77 2.44
2911 16611 2.102420 CTGTCCACCGGCACATAATCTA 59.898 50.000 0.00 0.00 0.00 1.98
2916 16616 0.687920 TTTCTGTCCACCGGCACATA 59.312 50.000 0.00 0.00 0.00 2.29
2924 16625 8.561738 TTAAAAGTCTCATATTTCTGTCCACC 57.438 34.615 0.00 0.00 0.00 4.61
2961 16662 7.547370 CCAGTTTTTGTTGGTTTTCATCAAGTA 59.453 33.333 0.00 0.00 36.69 2.24
2962 16663 6.371271 CCAGTTTTTGTTGGTTTTCATCAAGT 59.629 34.615 0.00 0.00 36.69 3.16
3003 16704 4.374906 GCGCACAACAATGTTTCATTGTAC 60.375 41.667 22.52 14.02 40.94 2.90
3023 16724 6.140786 GCTACCCTATTTTTACTTTATGCGC 58.859 40.000 0.00 0.00 0.00 6.09
3049 16750 8.682936 AGTATTTATCAATTTCCATTCGAGCT 57.317 30.769 0.00 0.00 0.00 4.09
3217 16927 8.574196 TTCTTGCAAGCTATTGTTCTTAAAAC 57.426 30.769 21.99 0.00 38.76 2.43
3286 16999 7.601856 TGATTTACATTCTGAACAATTGGGTC 58.398 34.615 10.83 7.38 0.00 4.46
3494 17517 6.942532 TTTGTGGGAGATTGCTATGTAATC 57.057 37.500 1.14 1.14 35.44 1.75
3517 17540 2.315925 ATCATCGTTTCTCCGCACAT 57.684 45.000 0.00 0.00 0.00 3.21
3518 17541 2.951457 TATCATCGTTTCTCCGCACA 57.049 45.000 0.00 0.00 0.00 4.57
3519 17542 3.060272 CACATATCATCGTTTCTCCGCAC 60.060 47.826 0.00 0.00 0.00 5.34
3520 17543 3.123050 CACATATCATCGTTTCTCCGCA 58.877 45.455 0.00 0.00 0.00 5.69
3521 17544 3.381045 TCACATATCATCGTTTCTCCGC 58.619 45.455 0.00 0.00 0.00 5.54
3524 17547 4.747108 CCACCTCACATATCATCGTTTCTC 59.253 45.833 0.00 0.00 0.00 2.87
3529 17552 5.808366 ATAACCACCTCACATATCATCGT 57.192 39.130 0.00 0.00 0.00 3.73
3530 17553 6.687604 TGTATAACCACCTCACATATCATCG 58.312 40.000 0.00 0.00 0.00 3.84
3691 17745 5.869649 AAACAAAATCCCAAGTGCTACTT 57.130 34.783 0.00 0.00 39.39 2.24
3710 17772 0.248539 TGCACGCACGGGTTTAAAAC 60.249 50.000 0.00 0.00 0.00 2.43
3741 17807 2.435234 GTGCCGGCCGTGAACATA 60.435 61.111 26.77 0.00 0.00 2.29
3864 17930 4.208686 GATTCCTCGAGGCGGCGT 62.209 66.667 27.39 9.91 34.44 5.68
4203 18269 2.173782 TCCCAGGAAGTACTGCACAAAA 59.826 45.455 2.51 0.00 37.16 2.44
4270 18336 0.392193 GTCTCAGCCATGTCCACCTG 60.392 60.000 0.00 0.00 0.00 4.00
4341 18407 0.250901 ATGCGTCTGGAACAAGCCTT 60.251 50.000 0.00 0.00 38.70 4.35
4342 18408 0.613260 TATGCGTCTGGAACAAGCCT 59.387 50.000 0.00 0.00 38.70 4.58
4350 18416 3.197265 CAATCATGTGTATGCGTCTGGA 58.803 45.455 0.00 0.00 34.21 3.86
4353 18419 6.925610 ATAAACAATCATGTGTATGCGTCT 57.074 33.333 0.00 0.00 38.33 4.18
4355 18421 8.607441 AGATATAAACAATCATGTGTATGCGT 57.393 30.769 2.61 0.00 39.73 5.24
4374 18440 6.346678 CGATCGTCACGAACTTCTGAGATATA 60.347 42.308 2.76 0.00 39.99 0.86
4375 18441 5.559225 CGATCGTCACGAACTTCTGAGATAT 60.559 44.000 2.76 0.00 39.99 1.63
4518 18584 8.026607 GCAATTGTACTATTTTGACTGCCTAAA 58.973 33.333 7.40 0.00 0.00 1.85
4533 18599 7.820386 TCTCGATAAAAACAGGCAATTGTACTA 59.180 33.333 7.40 0.00 0.00 1.82
4569 18635 7.725818 TGCTTGAGAGATCAATAATGATGAC 57.274 36.000 0.00 0.00 46.30 3.06
4615 18681 2.818751 ATACCCAAAATGCTTCCGGA 57.181 45.000 0.00 0.00 0.00 5.14
4624 18690 4.055710 ACCTTTCCGGAATACCCAAAAT 57.944 40.909 19.62 0.00 36.31 1.82
4759 18829 0.178873 AACTTGGAGGAGTAGCCCCA 60.179 55.000 0.00 0.00 37.37 4.96
4783 18853 2.002977 CAGGAGGATGGCAAGGGGA 61.003 63.158 0.00 0.00 0.00 4.81
4787 18857 4.237445 CAGCAGGAGGATGGCAAG 57.763 61.111 0.00 0.00 0.00 4.01
4814 18884 5.163622 GCACTTTGCATAAATAAGCCTCAGA 60.164 40.000 0.00 0.00 44.26 3.27
4816 18886 4.997565 GCACTTTGCATAAATAAGCCTCA 58.002 39.130 0.00 0.00 44.26 3.86
4832 18949 3.326297 AGACTTTCCTCTGCTAGCACTTT 59.674 43.478 14.93 0.00 0.00 2.66
4881 18998 3.788227 AACACATGCAAGACCTCCTAA 57.212 42.857 0.00 0.00 0.00 2.69
4968 19085 0.179076 TCAGCATGATCGGCGAACAT 60.179 50.000 24.41 24.41 42.56 2.71
4988 19145 1.278127 ACTAACCATGTGTTCCTCCCG 59.722 52.381 3.25 0.00 38.42 5.14
5028 19185 1.155889 CACTTTGCCGAGTACATGCA 58.844 50.000 0.00 0.00 0.00 3.96
5179 19341 2.627945 TGCCGAGTTCATTTTATCGCT 58.372 42.857 0.00 0.00 33.94 4.93
5286 19451 4.530710 AAGCATAACCTACGTCTTCACA 57.469 40.909 0.00 0.00 0.00 3.58
5358 19935 7.307989 CCATATCCGAAAGACATGTATTTGGAC 60.308 40.741 25.65 13.16 30.21 4.02
5377 19954 4.265073 ACTGCTTTTGTCTCACCATATCC 58.735 43.478 0.00 0.00 0.00 2.59


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.