Multiple sequence alignment - TraesCS6B01G010900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G010900 chr6B 100.000 6263 0 0 1 6263 6536247 6542509 0.000000e+00 11566.0
1 TraesCS6B01G010900 chr6D 94.637 2256 95 12 2541 4773 3274434 3276686 0.000000e+00 3472.0
2 TraesCS6B01G010900 chr6D 85.455 2035 130 60 566 2539 3272420 3274349 0.000000e+00 1965.0
3 TraesCS6B01G010900 chr6D 83.494 1036 89 38 5251 6263 3278410 3279386 0.000000e+00 891.0
4 TraesCS6B01G010900 chr6D 84.332 734 88 19 3911 4630 79801772 79802492 0.000000e+00 693.0
5 TraesCS6B01G010900 chr6D 94.253 435 17 3 4824 5253 3276684 3277115 0.000000e+00 658.0
6 TraesCS6B01G010900 chr6A 90.256 1878 137 25 2422 4291 2063601 2065440 0.000000e+00 2412.0
7 TraesCS6B01G010900 chr6A 89.270 1398 90 23 4291 5657 2065487 2066855 0.000000e+00 1696.0
8 TraesCS6B01G010900 chr6A 86.600 1097 97 21 1362 2423 2062433 2063514 0.000000e+00 1166.0
9 TraesCS6B01G010900 chr6A 88.636 484 39 8 285 763 2061370 2061842 5.450000e-160 575.0
10 TraesCS6B01G010900 chr6A 90.341 352 22 4 805 1152 2061846 2062189 9.570000e-123 451.0
11 TraesCS6B01G010900 chr6A 89.416 274 23 2 1 272 2059408 2059677 2.160000e-89 340.0
12 TraesCS6B01G010900 chr4D 87.479 1805 175 26 2509 4291 214747726 214749501 0.000000e+00 2034.0
13 TraesCS6B01G010900 chr4D 87.979 965 87 15 1453 2413 214746226 214747165 0.000000e+00 1112.0
14 TraesCS6B01G010900 chr4D 84.332 734 88 19 3911 4630 194331999 194332719 0.000000e+00 693.0
15 TraesCS6B01G010900 chr4D 84.742 485 47 18 5798 6257 292023805 292024287 1.590000e-125 460.0
16 TraesCS6B01G010900 chr4D 88.701 354 28 6 4367 4717 214749643 214749987 7.510000e-114 422.0
17 TraesCS6B01G010900 chr4D 86.646 322 31 8 4979 5296 214752127 214752440 4.650000e-91 346.0
18 TraesCS6B01G010900 chr4B 87.053 1846 180 31 2484 4291 348946344 348948168 0.000000e+00 2030.0
19 TraesCS6B01G010900 chr4B 88.223 968 81 18 1453 2413 348945214 348946155 0.000000e+00 1125.0
20 TraesCS6B01G010900 chr4B 88.378 413 35 9 4370 4777 348948306 348948710 9.440000e-133 484.0
21 TraesCS6B01G010900 chr4B 91.354 347 28 2 5918 6263 411627032 411627377 2.040000e-129 473.0
22 TraesCS6B01G010900 chr4B 86.025 322 33 8 4979 5296 348950029 348950342 1.010000e-87 335.0
23 TraesCS6B01G010900 chr4B 83.168 303 24 12 977 1268 348944855 348945141 1.040000e-62 252.0
24 TraesCS6B01G010900 chr4A 87.014 1286 116 26 2484 3727 384397149 384395873 0.000000e+00 1402.0
25 TraesCS6B01G010900 chr4A 87.863 964 84 17 1456 2413 384398276 384397340 0.000000e+00 1101.0
26 TraesCS6B01G010900 chr4A 88.481 599 57 9 3700 4291 384395868 384395275 0.000000e+00 713.0
27 TraesCS6B01G010900 chr4A 88.943 407 36 5 4375 4777 384395130 384394729 1.570000e-135 494.0
28 TraesCS6B01G010900 chr4A 85.714 322 34 8 4979 5296 384393334 384393021 4.680000e-86 329.0
29 TraesCS6B01G010900 chr3D 84.490 735 85 21 3911 4630 347752068 347752788 0.000000e+00 699.0
30 TraesCS6B01G010900 chr3D 84.400 500 49 18 5789 6262 342121171 342120675 1.230000e-126 464.0
31 TraesCS6B01G010900 chr3D 89.796 343 30 4 5918 6257 463201970 463202310 9.640000e-118 435.0
32 TraesCS6B01G010900 chr3D 89.796 343 30 4 5918 6257 463233194 463233534 9.640000e-118 435.0
33 TraesCS6B01G010900 chr3D 88.679 53 6 0 5653 5705 558559537 558559485 1.460000e-06 65.8
34 TraesCS6B01G010900 chr3D 100.000 33 0 0 5652 5684 13608341 13608373 1.890000e-05 62.1
35 TraesCS6B01G010900 chr7D 84.332 734 88 19 3911 4630 67056479 67055759 0.000000e+00 693.0
36 TraesCS6B01G010900 chr7D 88.710 62 6 1 5653 5714 29682848 29682908 2.420000e-09 75.0
37 TraesCS6B01G010900 chr1D 85.542 498 42 19 5793 6263 201521041 201520547 1.570000e-135 494.0
38 TraesCS6B01G010900 chr5D 84.830 501 45 20 5789 6263 155794792 155794297 5.680000e-130 475.0
39 TraesCS6B01G010900 chr2A 84.493 503 45 24 5789 6263 229651742 229652239 3.420000e-127 466.0
40 TraesCS6B01G010900 chr5A 84.444 495 47 17 5789 6257 259059007 259059497 1.590000e-125 460.0
41 TraesCS6B01G010900 chr5A 81.295 278 24 14 5789 6041 514045367 514045093 3.830000e-47 200.0
42 TraesCS6B01G010900 chr3A 83.878 490 48 18 5798 6260 359388345 359387860 7.450000e-119 438.0
43 TraesCS6B01G010900 chr3A 83.843 458 45 18 5826 6257 606449369 606449823 5.840000e-110 409.0
44 TraesCS6B01G010900 chr2B 81.526 498 56 23 5793 6263 236712873 236713361 1.650000e-100 377.0
45 TraesCS6B01G010900 chrUn 88.710 62 7 0 5653 5714 11162520 11162581 6.730000e-10 76.8
46 TraesCS6B01G010900 chr3B 95.000 40 2 0 5653 5692 29340937 29340976 5.240000e-06 63.9
47 TraesCS6B01G010900 chr1B 87.273 55 7 0 5660 5714 623918784 623918838 5.240000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G010900 chr6B 6536247 6542509 6262 False 11566.000000 11566 100.00000 1 6263 1 chr6B.!!$F1 6262
1 TraesCS6B01G010900 chr6D 3272420 3279386 6966 False 1746.500000 3472 89.45975 566 6263 4 chr6D.!!$F2 5697
2 TraesCS6B01G010900 chr6D 79801772 79802492 720 False 693.000000 693 84.33200 3911 4630 1 chr6D.!!$F1 719
3 TraesCS6B01G010900 chr6A 2059408 2066855 7447 False 1106.666667 2412 89.08650 1 5657 6 chr6A.!!$F1 5656
4 TraesCS6B01G010900 chr4D 214746226 214752440 6214 False 978.500000 2034 87.70125 1453 5296 4 chr4D.!!$F3 3843
5 TraesCS6B01G010900 chr4D 194331999 194332719 720 False 693.000000 693 84.33200 3911 4630 1 chr4D.!!$F1 719
6 TraesCS6B01G010900 chr4B 348944855 348950342 5487 False 845.200000 2030 86.56940 977 5296 5 chr4B.!!$F2 4319
7 TraesCS6B01G010900 chr4A 384393021 384398276 5255 True 807.800000 1402 87.60300 1456 5296 5 chr4A.!!$R1 3840
8 TraesCS6B01G010900 chr3D 347752068 347752788 720 False 699.000000 699 84.49000 3911 4630 1 chr3D.!!$F2 719
9 TraesCS6B01G010900 chr7D 67055759 67056479 720 True 693.000000 693 84.33200 3911 4630 1 chr7D.!!$R1 719

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
771 2457 0.035439 TTTTCCAGCTTCTAGGGCGG 60.035 55.0 0.00 2.22 34.52 6.13 F
855 2549 0.243636 ACGTCGTAGGGTTTTACCGG 59.756 55.0 0.00 0.00 39.83 5.28 F
1211 2968 0.906775 CGGGGAGGTTGTTAGCCTAA 59.093 55.0 0.00 0.00 36.29 2.69 F
2633 5081 0.609957 TGCTCTGCTTTGACCATGGG 60.610 55.0 18.09 0.00 0.00 4.00 F
3174 5653 0.325933 TCTGTGGCTGATTCAGGTGG 59.674 55.0 15.28 0.00 31.21 4.61 F
4833 9645 0.250124 CTGTTACCGGCTGTTGTCCA 60.250 55.0 0.00 0.00 0.00 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1955 3792 0.176910 TCAGCGACAAGTGGACACAA 59.823 50.000 5.14 0.0 0.00 3.33 R
1985 3822 2.619590 CGGGTAATTAAGGTGGCAAGGT 60.620 50.000 0.00 0.0 0.00 3.50 R
3005 5482 1.123077 TCTGAGTGCAGTGAACCAGT 58.877 50.000 15.44 0.0 42.84 4.00 R
3611 6096 0.249911 ATCCTAATTCGCCCGCAGTC 60.250 55.000 0.00 0.0 0.00 3.51 R
5027 9840 3.205733 AGGGAAAAAGGTTAAGTGGGACA 59.794 43.478 0.00 0.0 0.00 4.02 R
5821 11960 0.038618 CCAACTCGATGACACCGACA 60.039 55.000 0.00 0.0 32.18 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
62 63 6.512253 GCCAATGGCGTACCTTAGTTTTATAC 60.512 42.308 9.14 0.00 39.62 1.47
63 64 6.539464 CCAATGGCGTACCTTAGTTTTATACA 59.461 38.462 0.00 0.00 36.63 2.29
76 77 9.906660 CTTAGTTTTATACAAGGCATCAAAACA 57.093 29.630 9.57 0.00 37.99 2.83
89 90 8.907222 AGGCATCAAAACAATTTACAAGAATT 57.093 26.923 0.00 0.00 0.00 2.17
90 91 9.995003 AGGCATCAAAACAATTTACAAGAATTA 57.005 25.926 0.00 0.00 0.00 1.40
117 120 0.461870 CACTATAAGCCGTGCTGCCA 60.462 55.000 0.00 0.00 39.62 4.92
126 129 2.633657 GTGCTGCCAGAACACACG 59.366 61.111 0.00 0.00 34.43 4.49
142 145 0.732880 CACGGCACACCTAGAACGAG 60.733 60.000 0.00 0.00 0.00 4.18
151 154 1.546476 ACCTAGAACGAGTGAAGGCTG 59.454 52.381 0.00 0.00 0.00 4.85
229 232 5.220815 GCTCCTGAATGATCTGATCAACAAC 60.221 44.000 22.91 14.43 43.50 3.32
233 236 2.470983 TGATCTGATCAACAACGGCA 57.529 45.000 17.56 0.00 36.11 5.69
234 237 2.989909 TGATCTGATCAACAACGGCAT 58.010 42.857 17.56 0.00 36.11 4.40
235 238 4.135747 TGATCTGATCAACAACGGCATA 57.864 40.909 17.56 0.00 36.11 3.14
236 239 4.707105 TGATCTGATCAACAACGGCATAT 58.293 39.130 17.56 0.00 36.11 1.78
243 246 6.163476 TGATCAACAACGGCATATATAGACC 58.837 40.000 0.00 0.00 0.00 3.85
257 260 8.543774 GCATATATAGACCGAGCATTGTTTATC 58.456 37.037 0.00 0.00 0.00 1.75
260 263 4.207891 AGACCGAGCATTGTTTATCAGT 57.792 40.909 0.00 0.00 0.00 3.41
275 278 9.767684 TTGTTTATCAGTGTTATTAAATGCTCG 57.232 29.630 0.00 0.00 0.00 5.03
276 279 8.394877 TGTTTATCAGTGTTATTAAATGCTCGG 58.605 33.333 0.00 0.00 0.00 4.63
277 280 8.395633 GTTTATCAGTGTTATTAAATGCTCGGT 58.604 33.333 0.00 0.00 0.00 4.69
278 281 8.500753 TTATCAGTGTTATTAAATGCTCGGTT 57.499 30.769 0.00 0.00 0.00 4.44
281 284 6.205853 TCAGTGTTATTAAATGCTCGGTTGTT 59.794 34.615 0.00 0.00 0.00 2.83
282 285 6.305399 CAGTGTTATTAAATGCTCGGTTGTTG 59.695 38.462 0.00 0.00 0.00 3.33
283 286 5.060446 GTGTTATTAAATGCTCGGTTGTTGC 59.940 40.000 0.00 0.00 0.00 4.17
334 2017 2.092699 AGGAGCCACTAATTCTCAAGGC 60.093 50.000 0.00 0.00 42.31 4.35
355 2038 1.921748 TGTGATGGTGGGATGGAATGA 59.078 47.619 0.00 0.00 0.00 2.57
357 2040 1.215173 TGATGGTGGGATGGAATGACC 59.785 52.381 0.00 0.00 39.54 4.02
373 2056 0.457035 GACCACCGTAATCCGCAGTA 59.543 55.000 0.00 0.00 34.38 2.74
386 2069 1.129879 CGCAGTAATGCAAAGCAGCG 61.130 55.000 16.30 10.85 43.65 5.18
421 2104 3.792047 CCGCCACACAGTGCATCG 61.792 66.667 0.00 1.23 31.34 3.84
437 2120 2.540361 GCATCGAAATGTGATGGACTGC 60.540 50.000 5.25 0.00 42.73 4.40
463 2146 3.486383 TCATCGGAAAGGCAAAAGAAGT 58.514 40.909 0.00 0.00 0.00 3.01
469 2152 3.368427 GGAAAGGCAAAAGAAGTATGGGC 60.368 47.826 0.00 0.00 0.00 5.36
470 2153 1.852633 AGGCAAAAGAAGTATGGGCC 58.147 50.000 0.00 0.00 40.18 5.80
509 2192 1.373497 GCCTCATGCGTCTATCCGG 60.373 63.158 0.00 0.00 0.00 5.14
512 2195 1.456892 TCATGCGTCTATCCGGGGT 60.457 57.895 0.00 0.00 0.00 4.95
514 2197 1.456892 ATGCGTCTATCCGGGGTCA 60.457 57.895 0.00 0.00 0.00 4.02
522 2205 4.219070 CGTCTATCCGGGGTCAATAACATA 59.781 45.833 0.00 0.00 0.00 2.29
529 2212 4.398044 CCGGGGTCAATAACATATATTGCC 59.602 45.833 0.00 7.74 35.50 4.52
535 2218 7.393234 GGGTCAATAACATATATTGCCAAGCTA 59.607 37.037 16.28 0.00 35.14 3.32
557 2240 2.092753 GCCAAGTGATTCAGATGGAGGA 60.093 50.000 17.68 0.00 32.82 3.71
559 2242 4.592942 CCAAGTGATTCAGATGGAGGAAA 58.407 43.478 10.75 0.00 32.82 3.13
560 2243 5.012239 CCAAGTGATTCAGATGGAGGAAAA 58.988 41.667 10.75 0.00 32.82 2.29
561 2244 5.477984 CCAAGTGATTCAGATGGAGGAAAAA 59.522 40.000 10.75 0.00 32.82 1.94
597 2283 3.519510 TCCCTCTCAGTAAACCATTGAGG 59.480 47.826 0.00 0.00 40.50 3.86
611 2297 0.478072 TTGAGGTGCCTCCACACAAT 59.522 50.000 14.97 0.00 43.88 2.71
663 2349 4.278419 AGCTTTGCAGATTTTTACCGTTCT 59.722 37.500 0.00 0.00 0.00 3.01
664 2350 5.472137 AGCTTTGCAGATTTTTACCGTTCTA 59.528 36.000 0.00 0.00 0.00 2.10
665 2351 6.016610 AGCTTTGCAGATTTTTACCGTTCTAA 60.017 34.615 0.00 0.00 0.00 2.10
679 2365 1.544691 GTTCTAACCAGCTCCACGAGA 59.455 52.381 0.00 0.00 0.00 4.04
687 2373 4.467232 CTCCACGAGAGCAGTTCG 57.533 61.111 0.00 3.44 43.38 3.95
688 2374 1.153939 CTCCACGAGAGCAGTTCGG 60.154 63.158 8.92 0.00 42.12 4.30
689 2375 2.125912 CCACGAGAGCAGTTCGGG 60.126 66.667 8.92 4.93 42.12 5.14
690 2376 2.125912 CACGAGAGCAGTTCGGGG 60.126 66.667 8.92 0.00 42.12 5.73
691 2377 4.070552 ACGAGAGCAGTTCGGGGC 62.071 66.667 8.92 0.00 42.12 5.80
692 2378 4.821589 CGAGAGCAGTTCGGGGCC 62.822 72.222 0.00 0.00 34.56 5.80
756 2442 3.793559 TCAGTAGCTAGGCCGAATTTTC 58.206 45.455 0.00 0.00 0.00 2.29
770 2456 2.044123 ATTTTCCAGCTTCTAGGGCG 57.956 50.000 0.00 0.00 34.52 6.13
771 2457 0.035439 TTTTCCAGCTTCTAGGGCGG 60.035 55.000 0.00 2.22 34.52 6.13
772 2458 1.198759 TTTCCAGCTTCTAGGGCGGT 61.199 55.000 13.77 0.00 34.52 5.68
773 2459 0.324923 TTCCAGCTTCTAGGGCGGTA 60.325 55.000 13.77 6.87 34.52 4.02
775 2461 1.742768 CAGCTTCTAGGGCGGTAGG 59.257 63.158 0.00 0.00 34.52 3.18
776 2462 1.457831 AGCTTCTAGGGCGGTAGGG 60.458 63.158 0.00 0.00 34.52 3.53
796 2490 2.203126 GCGGGGCCTCTTCATCTG 60.203 66.667 0.00 0.00 0.00 2.90
800 2494 0.620556 GGGGCCTCTTCATCTGAACA 59.379 55.000 0.84 0.00 0.00 3.18
803 2497 3.157087 GGGCCTCTTCATCTGAACAAAA 58.843 45.455 0.84 0.00 0.00 2.44
804 2498 3.192212 GGGCCTCTTCATCTGAACAAAAG 59.808 47.826 0.84 0.00 0.00 2.27
805 2499 3.366781 GGCCTCTTCATCTGAACAAAAGC 60.367 47.826 0.00 0.00 0.00 3.51
807 2501 4.697352 GCCTCTTCATCTGAACAAAAGCTA 59.303 41.667 0.00 0.00 0.00 3.32
808 2502 5.182001 GCCTCTTCATCTGAACAAAAGCTAA 59.818 40.000 0.00 0.00 0.00 3.09
810 2504 6.429385 CCTCTTCATCTGAACAAAAGCTAACT 59.571 38.462 0.00 0.00 0.00 2.24
811 2505 7.194607 TCTTCATCTGAACAAAAGCTAACTG 57.805 36.000 0.00 0.00 0.00 3.16
812 2506 6.767902 TCTTCATCTGAACAAAAGCTAACTGT 59.232 34.615 0.00 0.00 0.00 3.55
813 2507 6.545504 TCATCTGAACAAAAGCTAACTGTC 57.454 37.500 0.00 0.00 0.00 3.51
814 2508 5.470098 TCATCTGAACAAAAGCTAACTGTCC 59.530 40.000 0.00 0.00 0.00 4.02
815 2509 5.036117 TCTGAACAAAAGCTAACTGTCCT 57.964 39.130 0.00 0.00 0.00 3.85
816 2510 5.057149 TCTGAACAAAAGCTAACTGTCCTC 58.943 41.667 0.00 0.00 0.00 3.71
817 2511 4.134563 TGAACAAAAGCTAACTGTCCTCC 58.865 43.478 0.00 0.00 0.00 4.30
827 2521 1.153695 ACTGTCCTCCCCCTCCACTA 61.154 60.000 0.00 0.00 0.00 2.74
855 2549 0.243636 ACGTCGTAGGGTTTTACCGG 59.756 55.000 0.00 0.00 39.83 5.28
864 2558 1.673923 GGGTTTTACCGGTTCTCCTCG 60.674 57.143 15.04 0.00 39.83 4.63
914 2608 4.125695 GCCTCCGCGTACGTCCTT 62.126 66.667 17.90 0.00 37.70 3.36
1057 2755 4.520846 CAAGAACATCGGCGCCGC 62.521 66.667 42.78 28.21 39.59 6.53
1077 2775 2.730733 GCGAGATCTCCGCCATCA 59.269 61.111 21.48 0.00 46.22 3.07
1142 2840 0.953471 CCCGTTCCGTGCATCTTTGA 60.953 55.000 0.00 0.00 0.00 2.69
1180 2933 2.399611 CCGGCGCTTTTGATCGAC 59.600 61.111 7.64 0.00 0.00 4.20
1207 2964 2.818274 CGCGGGGAGGTTGTTAGC 60.818 66.667 0.00 0.00 0.00 3.09
1211 2968 0.906775 CGGGGAGGTTGTTAGCCTAA 59.093 55.000 0.00 0.00 36.29 2.69
1276 3033 1.323534 CGATTCGCAGTTCGTTAAGGG 59.676 52.381 0.00 0.00 39.67 3.95
1301 3078 4.502950 CCACAGCTTTTCTTTTTATGGGCA 60.503 41.667 0.00 0.00 0.00 5.36
1308 3085 7.387673 AGCTTTTCTTTTTATGGGCACATTAAC 59.612 33.333 6.84 0.00 38.53 2.01
1329 3106 2.801111 CGATGAGCTGATTCTGGTGATG 59.199 50.000 0.00 0.00 0.00 3.07
1330 3107 3.492137 CGATGAGCTGATTCTGGTGATGA 60.492 47.826 0.00 0.00 0.00 2.92
1331 3108 3.986996 TGAGCTGATTCTGGTGATGAA 57.013 42.857 0.00 0.00 0.00 2.57
1332 3109 3.870274 TGAGCTGATTCTGGTGATGAAG 58.130 45.455 0.00 0.00 0.00 3.02
1379 3169 5.537188 TCACTAATGAAATTGTGTTTGGCC 58.463 37.500 0.00 0.00 36.99 5.36
1507 3313 6.341316 TCATCTAGACAAGCACTTTATCACC 58.659 40.000 0.00 0.00 0.00 4.02
1510 3316 5.932303 TCTAGACAAGCACTTTATCACCAAC 59.068 40.000 0.00 0.00 0.00 3.77
1576 3382 2.914777 CTAAGCTCCTGGTGCTCGCC 62.915 65.000 22.23 0.00 40.22 5.54
1663 3469 2.665603 GACAAGGCCGAGGAGCTT 59.334 61.111 0.00 0.00 0.00 3.74
1727 3533 5.445964 ACACCAAGGCCATTAATAAGGTAG 58.554 41.667 5.01 0.00 0.00 3.18
1728 3534 4.278419 CACCAAGGCCATTAATAAGGTAGC 59.722 45.833 5.01 0.00 0.00 3.58
1729 3535 3.826729 CCAAGGCCATTAATAAGGTAGCC 59.173 47.826 5.01 0.00 39.25 3.93
1730 3536 4.469657 CAAGGCCATTAATAAGGTAGCCA 58.530 43.478 5.01 0.00 41.45 4.75
1746 3583 4.514066 GGTAGCCATTTACCGTCCAATAAG 59.486 45.833 0.00 0.00 34.24 1.73
1751 3588 5.685599 GCCATTTACCGTCCAATAAGTAGGA 60.686 44.000 0.00 0.00 0.00 2.94
1795 3632 4.240881 ACATATGATTGTGGGCAACTCT 57.759 40.909 10.38 0.00 37.44 3.24
1797 3634 5.018809 ACATATGATTGTGGGCAACTCTTT 58.981 37.500 10.38 0.00 37.44 2.52
1810 3647 6.760770 TGGGCAACTCTTTCTTTTGTTTAATG 59.239 34.615 0.00 0.00 0.00 1.90
1824 3661 5.963140 TGTTTAATGTTTGTGTCGTACGA 57.037 34.783 15.28 15.28 0.00 3.43
1825 3662 6.528014 TGTTTAATGTTTGTGTCGTACGAT 57.472 33.333 22.57 4.26 0.00 3.73
1944 3781 1.738830 CCAGCAAGCAATTTGGCCG 60.739 57.895 0.00 0.00 37.26 6.13
1979 3816 2.233676 TGTCCACTTGTCGCTGATGTAT 59.766 45.455 0.00 0.00 0.00 2.29
1985 3822 4.329801 CACTTGTCGCTGATGTATGCTAAA 59.670 41.667 0.00 0.00 0.00 1.85
2014 3851 3.871594 CACCTTAATTACCCGAGAGCAAG 59.128 47.826 0.00 0.00 0.00 4.01
2068 3908 9.667107 CCACTAATACTTGGTTTCTTTCATCTA 57.333 33.333 0.00 0.00 0.00 1.98
2131 3971 4.965119 AAATCCGGCTAACTTCAATGTC 57.035 40.909 0.00 0.00 0.00 3.06
2271 4111 4.326548 GGTGAGCTCGAAATTGTACACTAC 59.673 45.833 9.64 0.00 0.00 2.73
2272 4112 4.921515 GTGAGCTCGAAATTGTACACTACA 59.078 41.667 9.64 0.00 36.79 2.74
2294 4134 7.840342 ACAATAATTGTGTGCTTTTGTCAAA 57.160 28.000 0.00 0.00 43.48 2.69
2302 4142 5.931146 TGTGTGCTTTTGTCAAAAATCTGTT 59.069 32.000 11.73 0.00 34.81 3.16
2331 4171 8.910351 ATCTATTTTACTTACAGCCAATCTCC 57.090 34.615 0.00 0.00 0.00 3.71
2334 4174 7.631717 ATTTTACTTACAGCCAATCTCCTTC 57.368 36.000 0.00 0.00 0.00 3.46
2335 4175 6.374417 TTTACTTACAGCCAATCTCCTTCT 57.626 37.500 0.00 0.00 0.00 2.85
2336 4176 4.213564 ACTTACAGCCAATCTCCTTCTG 57.786 45.455 0.00 0.00 0.00 3.02
2337 4177 3.584848 ACTTACAGCCAATCTCCTTCTGT 59.415 43.478 0.00 0.00 40.60 3.41
2338 4178 4.777896 ACTTACAGCCAATCTCCTTCTGTA 59.222 41.667 0.00 0.00 38.71 2.74
2339 4179 3.618690 ACAGCCAATCTCCTTCTGTAC 57.381 47.619 0.00 0.00 36.37 2.90
2363 4203 5.597806 TCTTATGTATAAACAGCTCCCACG 58.402 41.667 0.00 0.00 39.49 4.94
2364 4204 2.018542 TGTATAAACAGCTCCCACGC 57.981 50.000 0.00 0.00 0.00 5.34
2365 4205 1.276705 TGTATAAACAGCTCCCACGCA 59.723 47.619 0.00 0.00 0.00 5.24
2366 4206 2.093181 TGTATAAACAGCTCCCACGCAT 60.093 45.455 0.00 0.00 0.00 4.73
2376 4219 2.677037 GCTCCCACGCATTGTACTAACT 60.677 50.000 0.00 0.00 0.00 2.24
2633 5081 0.609957 TGCTCTGCTTTGACCATGGG 60.610 55.000 18.09 0.00 0.00 4.00
2653 5109 2.096417 GGCTGTTGTTTAGTGTACGCTG 60.096 50.000 19.20 0.57 0.00 5.18
2741 5197 7.681679 TGTAGAATCCAACTGTTACACCATTA 58.318 34.615 0.00 0.00 0.00 1.90
2747 5203 6.174760 TCCAACTGTTACACCATTATACCAC 58.825 40.000 0.00 0.00 0.00 4.16
2748 5204 5.941058 CCAACTGTTACACCATTATACCACA 59.059 40.000 0.00 0.00 0.00 4.17
2879 5339 9.586435 GGGTTCCTGATATTTTTCTAATTTGTG 57.414 33.333 0.00 0.00 0.00 3.33
3174 5653 0.325933 TCTGTGGCTGATTCAGGTGG 59.674 55.000 15.28 0.00 31.21 4.61
3240 5719 6.552629 TGCATTTTTGTGAACGTTACAAGTA 58.447 32.000 16.97 12.24 39.03 2.24
3345 5824 9.856162 ATAACCGTTAATTGGAGGTTGTAATAT 57.144 29.630 17.81 5.77 45.49 1.28
3475 5960 5.647658 TCTGAAAGTCAGCTCAAAGTTTGAA 59.352 36.000 18.55 1.83 43.95 2.69
3502 5987 2.426024 GAGATTGTGCCGTACTACTGGA 59.574 50.000 0.00 0.00 0.00 3.86
3530 6015 3.502211 AGCACTTGTAATTTCTGGGTTCG 59.498 43.478 0.00 0.00 0.00 3.95
3611 6096 2.435938 TTGAAGCTTAGCCGGCCG 60.436 61.111 26.15 21.04 0.00 6.13
3613 6098 2.890961 GAAGCTTAGCCGGCCGAC 60.891 66.667 30.73 17.62 0.00 4.79
3635 6120 1.369625 CGGGCGAATTAGGATATGCC 58.630 55.000 0.00 0.00 41.72 4.40
3647 6132 2.103263 AGGATATGCCGACTCTGTTTCC 59.897 50.000 0.00 0.00 43.43 3.13
3649 6134 0.459585 TATGCCGACTCTGTTTCCGC 60.460 55.000 0.00 0.00 0.00 5.54
3715 6236 6.368791 TGATTTCTCGAGTAACATCACTTTGG 59.631 38.462 13.13 0.00 0.00 3.28
3739 6260 5.124457 GGCTTTCTCAACATATCTGCTTTGA 59.876 40.000 0.00 0.00 0.00 2.69
3903 6424 7.073088 TGTGATATAGGTGGAAACCAATATCCA 59.927 37.037 13.63 10.28 43.32 3.41
3905 6426 9.345254 TGATATAGGTGGAAACCAATATCCATA 57.655 33.333 13.63 5.14 46.78 2.74
3909 6430 6.306987 AGGTGGAAACCAATATCCATACATC 58.693 40.000 0.00 0.00 46.78 3.06
4161 6692 8.862325 AACATGAGGTTACAAATGATAGTTCA 57.138 30.769 0.00 0.00 38.15 3.18
4221 6754 1.064505 CATGCATTTCCAGTACAGGCG 59.935 52.381 0.00 0.00 0.00 5.52
4258 6796 1.843368 ATTGTGCATCTTGTCCTGGG 58.157 50.000 0.00 0.00 0.00 4.45
4259 6797 0.478072 TTGTGCATCTTGTCCTGGGT 59.522 50.000 0.00 0.00 0.00 4.51
4262 6800 2.107378 TGTGCATCTTGTCCTGGGTTTA 59.893 45.455 0.00 0.00 0.00 2.01
4345 6939 7.946207 TGTTTGCATTATTTGTTAGAGTTCCA 58.054 30.769 0.00 0.00 0.00 3.53
4369 6973 2.964464 CCTCTGCAGGACTCAGACATAT 59.036 50.000 15.13 0.00 43.65 1.78
4413 7056 6.055588 TCCTGCTATAATCAGTTTTGGTAGC 58.944 40.000 0.00 0.00 35.02 3.58
4576 7256 1.880819 GCTGGACTTGGTGCAATGGG 61.881 60.000 0.00 0.00 32.71 4.00
4643 7323 3.771216 AGTTGGCATTGACTTGAAGGAT 58.229 40.909 0.00 0.00 0.00 3.24
4717 7560 6.998673 ACAAAGTAAGCCTTACTCAACATCTT 59.001 34.615 17.09 3.91 45.33 2.40
4746 7589 6.539103 GTCAATAGGTGTGGAAATCCTTCTAC 59.461 42.308 0.44 0.00 41.97 2.59
4794 7637 7.952671 TGCTCCTTATCGTTTCAATCTATACT 58.047 34.615 0.00 0.00 0.00 2.12
4833 9645 0.250124 CTGTTACCGGCTGTTGTCCA 60.250 55.000 0.00 0.00 0.00 4.02
4900 9712 6.013379 TCAGTTCTTTCTCATACCCAGTTCAT 60.013 38.462 0.00 0.00 0.00 2.57
4943 9755 0.611618 TTCCGTGCTTTCATGCCCAT 60.612 50.000 0.00 0.00 0.00 4.00
5025 9838 6.167685 TGAAGTGCGTACATAGGTTGTTATT 58.832 36.000 6.38 0.00 39.87 1.40
5026 9839 7.321908 TGAAGTGCGTACATAGGTTGTTATTA 58.678 34.615 6.38 0.00 39.87 0.98
5027 9840 7.982919 TGAAGTGCGTACATAGGTTGTTATTAT 59.017 33.333 6.38 0.00 39.87 1.28
5088 9901 5.174761 CGCTCTAAAATACTCAGCAGATGTC 59.825 44.000 0.00 0.00 0.00 3.06
5159 9972 9.122779 TCATGTCATCTTCATATGCATAAAACA 57.877 29.630 11.13 3.55 0.00 2.83
5189 10006 9.478019 GTCGTTTATTCATATGCTAATATGTGC 57.522 33.333 0.00 0.00 44.16 4.57
5275 11389 5.929697 TGAAGATTAGTTTGTCTGTGCAG 57.070 39.130 0.00 0.00 0.00 4.41
5395 11509 0.321564 TCTCGCTGGTGGATTTGTGG 60.322 55.000 0.00 0.00 0.00 4.17
5396 11510 0.321564 CTCGCTGGTGGATTTGTGGA 60.322 55.000 0.00 0.00 0.00 4.02
5399 11513 1.545582 CGCTGGTGGATTTGTGGATTT 59.454 47.619 0.00 0.00 0.00 2.17
5400 11514 2.671914 CGCTGGTGGATTTGTGGATTTG 60.672 50.000 0.00 0.00 0.00 2.32
5402 11516 3.861886 GCTGGTGGATTTGTGGATTTGTG 60.862 47.826 0.00 0.00 0.00 3.33
5403 11517 2.632028 TGGTGGATTTGTGGATTTGTGG 59.368 45.455 0.00 0.00 0.00 4.17
5427 11566 7.045416 GGATTTGTGGTACTGTGTATCACATA 58.955 38.462 20.06 16.66 43.71 2.29
5432 11571 9.945904 TTGTGGTACTGTGTATCACATAATAAA 57.054 29.630 20.06 5.94 43.71 1.40
5457 11596 3.299340 GAGACTTGCTCGTCCAGTTTA 57.701 47.619 2.92 0.00 34.46 2.01
5467 11606 5.935206 TGCTCGTCCAGTTTATTATGTGAAA 59.065 36.000 0.00 0.00 0.00 2.69
5484 11623 4.354587 GTGAAACAAAGCTGGTCTTGAAG 58.645 43.478 2.92 0.00 36.32 3.02
5499 11638 6.126097 TGGTCTTGAAGGATTGGGAATCATAT 60.126 38.462 0.00 0.00 39.71 1.78
5508 11647 7.959175 AGGATTGGGAATCATATTGATGTTTG 58.041 34.615 0.00 0.00 37.15 2.93
5523 11662 8.633075 ATTGATGTTTGTAAAACTCTGTTGTG 57.367 30.769 4.65 0.00 0.00 3.33
5524 11663 7.151999 TGATGTTTGTAAAACTCTGTTGTGT 57.848 32.000 4.65 0.00 0.00 3.72
5525 11664 7.598278 TGATGTTTGTAAAACTCTGTTGTGTT 58.402 30.769 4.65 0.00 0.00 3.32
5526 11665 8.731605 TGATGTTTGTAAAACTCTGTTGTGTTA 58.268 29.630 4.65 0.00 30.78 2.41
5527 11666 9.221775 GATGTTTGTAAAACTCTGTTGTGTTAG 57.778 33.333 4.65 0.00 30.78 2.34
5528 11667 7.024768 TGTTTGTAAAACTCTGTTGTGTTAGC 58.975 34.615 4.65 0.00 30.78 3.09
5529 11668 6.995511 TTGTAAAACTCTGTTGTGTTAGCT 57.004 33.333 0.00 0.00 30.78 3.32
5530 11669 6.598753 TGTAAAACTCTGTTGTGTTAGCTC 57.401 37.500 0.00 0.00 30.78 4.09
5533 11672 6.759497 AAAACTCTGTTGTGTTAGCTCTTT 57.241 33.333 0.00 0.00 30.78 2.52
5554 11693 8.340618 TCTTTGCTTTTCATTAAGATAGCTGT 57.659 30.769 0.00 0.00 36.07 4.40
5555 11694 8.796475 TCTTTGCTTTTCATTAAGATAGCTGTT 58.204 29.630 0.00 0.00 36.07 3.16
5556 11695 9.415544 CTTTGCTTTTCATTAAGATAGCTGTTT 57.584 29.630 0.00 0.00 36.07 2.83
5557 11696 8.746922 TTGCTTTTCATTAAGATAGCTGTTTG 57.253 30.769 0.00 0.00 36.07 2.93
5558 11697 7.885297 TGCTTTTCATTAAGATAGCTGTTTGT 58.115 30.769 0.00 0.00 36.07 2.83
5559 11698 8.359642 TGCTTTTCATTAAGATAGCTGTTTGTT 58.640 29.630 0.00 0.00 36.07 2.83
5560 11699 9.196552 GCTTTTCATTAAGATAGCTGTTTGTTT 57.803 29.630 0.00 0.00 33.72 2.83
5563 11702 9.897744 TTTCATTAAGATAGCTGTTTGTTTGAG 57.102 29.630 0.00 0.00 0.00 3.02
5644 11783 3.678806 GCAACATCATCTCTTACCCGTCA 60.679 47.826 0.00 0.00 0.00 4.35
5653 11792 2.230508 CTCTTACCCGTCACAGCACTTA 59.769 50.000 0.00 0.00 0.00 2.24
5654 11793 2.029649 TCTTACCCGTCACAGCACTTAC 60.030 50.000 0.00 0.00 0.00 2.34
5655 11794 1.624336 TACCCGTCACAGCACTTACT 58.376 50.000 0.00 0.00 0.00 2.24
5656 11795 0.317479 ACCCGTCACAGCACTTACTC 59.683 55.000 0.00 0.00 0.00 2.59
5660 11799 1.000955 CGTCACAGCACTTACTCCCTT 59.999 52.381 0.00 0.00 0.00 3.95
5678 11817 6.789959 ACTCCCTTCATCCATATATATAGGGC 59.210 42.308 17.00 0.00 40.71 5.19
5686 11825 7.738984 TCATCCATATATATAGGGCCTAATGCA 59.261 37.037 18.91 2.57 43.89 3.96
5687 11826 7.316393 TCCATATATATAGGGCCTAATGCAC 57.684 40.000 18.91 0.00 46.89 4.57
5700 11839 4.479619 CCTAATGCACTTTTCAAGACTGC 58.520 43.478 0.00 0.00 32.77 4.40
5716 11855 6.149973 TCAAGACTGCCTTTGATTATTGAGTG 59.850 38.462 0.00 0.00 31.42 3.51
5742 11881 1.132834 ACACACATATGCATGCGTTGG 59.867 47.619 19.31 12.92 35.39 3.77
5743 11882 1.132834 CACACATATGCATGCGTTGGT 59.867 47.619 19.31 13.59 35.39 3.67
5765 11904 2.963499 CGAGCACGCACTGATACAT 58.037 52.632 0.00 0.00 0.00 2.29
5766 11905 1.280982 CGAGCACGCACTGATACATT 58.719 50.000 0.00 0.00 0.00 2.71
5767 11906 2.459934 CGAGCACGCACTGATACATTA 58.540 47.619 0.00 0.00 0.00 1.90
5768 11907 2.216488 CGAGCACGCACTGATACATTAC 59.784 50.000 0.00 0.00 0.00 1.89
5769 11908 3.186909 GAGCACGCACTGATACATTACA 58.813 45.455 0.00 0.00 0.00 2.41
5770 11909 3.797039 AGCACGCACTGATACATTACAT 58.203 40.909 0.00 0.00 0.00 2.29
5771 11910 3.804325 AGCACGCACTGATACATTACATC 59.196 43.478 0.00 0.00 0.00 3.06
5772 11911 3.804325 GCACGCACTGATACATTACATCT 59.196 43.478 0.00 0.00 0.00 2.90
5773 11912 4.271049 GCACGCACTGATACATTACATCTT 59.729 41.667 0.00 0.00 0.00 2.40
5774 11913 5.731278 CACGCACTGATACATTACATCTTG 58.269 41.667 0.00 0.00 0.00 3.02
5775 11914 4.271049 ACGCACTGATACATTACATCTTGC 59.729 41.667 0.00 0.00 32.88 4.01
5776 11915 4.319046 CGCACTGATACATTACATCTTGCC 60.319 45.833 0.00 0.00 32.73 4.52
5777 11916 4.818546 GCACTGATACATTACATCTTGCCT 59.181 41.667 0.00 0.00 31.37 4.75
5778 11917 5.277683 GCACTGATACATTACATCTTGCCTG 60.278 44.000 0.00 0.00 31.37 4.85
5779 11918 5.237996 CACTGATACATTACATCTTGCCTGG 59.762 44.000 0.00 0.00 0.00 4.45
5780 11919 5.130975 ACTGATACATTACATCTTGCCTGGA 59.869 40.000 0.00 0.00 0.00 3.86
5781 11920 6.183361 ACTGATACATTACATCTTGCCTGGAT 60.183 38.462 0.00 0.00 0.00 3.41
5782 11921 5.999600 TGATACATTACATCTTGCCTGGATG 59.000 40.000 0.00 8.46 44.17 3.51
5783 11922 3.559069 ACATTACATCTTGCCTGGATGG 58.441 45.455 0.00 0.00 43.25 3.51
5784 11923 3.202818 ACATTACATCTTGCCTGGATGGA 59.797 43.478 0.00 4.21 43.25 3.41
5785 11924 4.141088 ACATTACATCTTGCCTGGATGGAT 60.141 41.667 0.00 0.00 43.25 3.41
5786 11925 2.653234 ACATCTTGCCTGGATGGATC 57.347 50.000 0.00 0.00 43.25 3.36
5787 11926 1.848388 ACATCTTGCCTGGATGGATCA 59.152 47.619 0.00 0.00 43.25 2.92
5788 11927 2.445905 ACATCTTGCCTGGATGGATCAT 59.554 45.455 0.00 0.00 43.25 2.45
5789 11928 2.945080 TCTTGCCTGGATGGATCATC 57.055 50.000 0.00 0.00 39.87 2.92
5790 11929 2.415624 TCTTGCCTGGATGGATCATCT 58.584 47.619 0.00 0.00 40.39 2.90
5791 11930 3.590714 TCTTGCCTGGATGGATCATCTA 58.409 45.455 0.00 1.46 40.39 1.98
5792 11931 4.173594 TCTTGCCTGGATGGATCATCTAT 58.826 43.478 0.00 0.00 40.39 1.98
5804 11943 9.030452 GGATGGATCATCTATTTACACTAGTCT 57.970 37.037 7.68 0.00 40.39 3.24
5807 11946 9.862149 TGGATCATCTATTTACACTAGTCTGTA 57.138 33.333 0.00 0.00 0.00 2.74
5812 11951 9.619316 CATCTATTTACACTAGTCTGTATCAGC 57.381 37.037 0.00 0.00 0.00 4.26
5816 11955 3.611970 ACACTAGTCTGTATCAGCGAGT 58.388 45.455 0.00 0.00 29.76 4.18
5817 11956 3.375610 ACACTAGTCTGTATCAGCGAGTG 59.624 47.826 20.05 20.05 41.49 3.51
5820 11959 2.437413 AGTCTGTATCAGCGAGTGTCA 58.563 47.619 0.00 0.00 0.00 3.58
5821 11960 3.020274 AGTCTGTATCAGCGAGTGTCAT 58.980 45.455 0.00 0.00 0.00 3.06
5822 11961 3.111838 GTCTGTATCAGCGAGTGTCATG 58.888 50.000 0.00 0.00 0.00 3.07
5824 11963 3.111838 CTGTATCAGCGAGTGTCATGTC 58.888 50.000 0.00 0.00 0.00 3.06
5825 11964 2.112522 GTATCAGCGAGTGTCATGTCG 58.887 52.381 0.00 0.00 39.25 4.35
5826 11965 0.179127 ATCAGCGAGTGTCATGTCGG 60.179 55.000 5.71 0.00 36.67 4.79
5834 11975 0.992072 GTGTCATGTCGGTGTCATCG 59.008 55.000 0.00 0.00 0.00 3.84
5839 11980 1.655597 CATGTCGGTGTCATCGAGTTG 59.344 52.381 8.82 5.85 37.31 3.16
5855 11996 2.814336 GAGTTGGGTCAAAGGCTTGTAG 59.186 50.000 0.00 0.00 33.94 2.74
5866 12007 3.525800 AGGCTTGTAGTGGTTGGATTT 57.474 42.857 0.00 0.00 0.00 2.17
5912 12067 1.337703 CTCAAGAGAGAGCCATCGGAG 59.662 57.143 0.00 0.00 44.98 4.63
5914 12069 1.733402 AAGAGAGAGCCATCGGAGCG 61.733 60.000 0.00 0.00 34.64 5.03
5920 12084 3.195698 GCCATCGGAGCGAACCAC 61.196 66.667 0.00 0.00 39.99 4.16
5923 12087 0.527817 CCATCGGAGCGAACCACTAC 60.528 60.000 0.00 0.00 39.99 2.73
5931 12095 3.371285 GGAGCGAACCACTACTCATTTTC 59.629 47.826 0.00 0.00 0.00 2.29
5948 12112 2.015456 TTCTGAGAAGAGAGCCACCA 57.985 50.000 0.00 0.00 0.00 4.17
5955 12119 2.027377 AGAAGAGAGCCACCAACTCATG 60.027 50.000 0.00 0.00 36.58 3.07
5983 12147 5.649395 TGAGATCAAGTGATTCCAATCCAAC 59.351 40.000 0.00 0.00 34.37 3.77
5989 12153 6.723515 TCAAGTGATTCCAATCCAACCATTTA 59.276 34.615 0.00 0.00 34.50 1.40
5995 12159 6.755542 TTCCAATCCAACCATTTAAACCTT 57.244 33.333 0.00 0.00 0.00 3.50
6006 12170 7.170393 ACCATTTAAACCTTGATTTCTAGCC 57.830 36.000 0.00 0.00 0.00 3.93
6013 12177 2.242196 CCTTGATTTCTAGCCTTCCCCA 59.758 50.000 0.00 0.00 0.00 4.96
6019 12183 5.014755 TGATTTCTAGCCTTCCCCAAAGTTA 59.985 40.000 0.00 0.00 32.69 2.24
6024 12188 3.497332 AGCCTTCCCCAAAGTTACTTTC 58.503 45.455 7.45 0.00 30.60 2.62
6035 12199 6.092748 CCAAAGTTACTTTCCATTCAATCCG 58.907 40.000 7.45 0.00 30.60 4.18
6041 12205 3.054802 ACTTTCCATTCAATCCGCTCTCT 60.055 43.478 0.00 0.00 0.00 3.10
6044 12208 4.963318 TCCATTCAATCCGCTCTCTTAT 57.037 40.909 0.00 0.00 0.00 1.73
6054 12218 2.611292 CCGCTCTCTTATCAAAGCCAAG 59.389 50.000 0.00 0.00 32.36 3.61
6056 12220 3.308323 CGCTCTCTTATCAAAGCCAAGTC 59.692 47.826 0.00 0.00 32.36 3.01
6057 12221 3.625313 GCTCTCTTATCAAAGCCAAGTCC 59.375 47.826 0.00 0.00 32.36 3.85
6065 12229 0.759346 AAAGCCAAGTCCGTGAGAGT 59.241 50.000 0.00 0.00 0.00 3.24
6085 12249 1.318576 GTGTTTGAGTGTTGGGGAGG 58.681 55.000 0.00 0.00 0.00 4.30
6087 12251 1.152830 TTTGAGTGTTGGGGAGGCC 59.847 57.895 0.00 0.00 0.00 5.19
6106 12270 4.012374 GGCCATCATTTGAAGACAAGAGA 58.988 43.478 0.00 0.00 37.32 3.10
6109 12273 6.350780 GGCCATCATTTGAAGACAAGAGAAAT 60.351 38.462 0.00 0.00 37.32 2.17
6117 12281 6.851222 TGAAGACAAGAGAAATGAGTTCAC 57.149 37.500 0.00 0.00 38.86 3.18
6134 12298 5.569355 AGTTCACCATCAATAACACCATCA 58.431 37.500 0.00 0.00 0.00 3.07
6159 12323 2.104963 ACCTTTTGGAGAGTGGTGTCTC 59.895 50.000 0.00 0.00 44.07 3.36
6180 12344 4.684724 TCCTAGATTGGTTAGGTGTCACT 58.315 43.478 2.35 0.00 39.01 3.41
6190 12354 1.003233 GGTGTCACTTGGGAGCCTC 60.003 63.158 2.35 0.00 0.00 4.70
6201 12365 0.329596 GGGAGCCTCCAAGATTGTGT 59.670 55.000 13.90 0.00 38.64 3.72
6227 12391 3.203487 TGAACCAAGGAGTTTGTAAGGGT 59.797 43.478 0.00 0.00 34.87 4.34
6246 12410 3.318557 GGGTAAGGAGATCACCTACTTCG 59.681 52.174 12.50 0.00 42.39 3.79
6250 12414 3.698289 AGGAGATCACCTACTTCGTGAA 58.302 45.455 10.32 0.00 43.16 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
45 46 7.493320 TGATGCCTTGTATAAAACTAAGGTACG 59.507 37.037 0.00 0.00 38.04 3.67
62 63 7.712264 TCTTGTAAATTGTTTTGATGCCTTG 57.288 32.000 0.00 0.00 0.00 3.61
63 64 8.907222 ATTCTTGTAAATTGTTTTGATGCCTT 57.093 26.923 0.00 0.00 0.00 4.35
89 90 4.748102 GCACGGCTTATAGTGTTTGCTATA 59.252 41.667 0.00 0.00 40.26 1.31
90 91 3.560068 GCACGGCTTATAGTGTTTGCTAT 59.440 43.478 0.00 0.00 40.26 2.97
96 99 1.369625 GCAGCACGGCTTATAGTGTT 58.630 50.000 0.00 0.00 36.40 3.32
103 106 1.671054 GTTCTGGCAGCACGGCTTA 60.671 57.895 10.34 0.00 36.40 3.09
117 120 0.033504 CTAGGTGTGCCGTGTGTTCT 59.966 55.000 0.00 0.00 40.50 3.01
126 129 0.601558 TCACTCGTTCTAGGTGTGCC 59.398 55.000 0.00 0.00 33.30 5.01
142 145 0.681733 TGTGAGGAGTCAGCCTTCAC 59.318 55.000 0.00 0.00 38.73 3.18
151 154 6.754675 GTCTTTAGATAGCTTTGTGAGGAGTC 59.245 42.308 0.00 0.00 0.00 3.36
229 232 3.717400 ATGCTCGGTCTATATATGCCG 57.283 47.619 15.11 15.11 44.95 5.69
233 236 9.809096 CTGATAAACAATGCTCGGTCTATATAT 57.191 33.333 0.00 0.00 0.00 0.86
234 237 8.803235 ACTGATAAACAATGCTCGGTCTATATA 58.197 33.333 0.00 0.00 0.00 0.86
235 238 7.600375 CACTGATAAACAATGCTCGGTCTATAT 59.400 37.037 0.00 0.00 0.00 0.86
236 239 6.923508 CACTGATAAACAATGCTCGGTCTATA 59.076 38.462 0.00 0.00 0.00 1.31
243 246 9.767684 TTTAATAACACTGATAAACAATGCTCG 57.232 29.630 0.00 0.00 0.00 5.03
257 260 5.938322 ACAACCGAGCATTTAATAACACTG 58.062 37.500 0.00 0.00 0.00 3.66
260 263 5.157781 GCAACAACCGAGCATTTAATAACA 58.842 37.500 0.00 0.00 0.00 2.41
272 275 1.566018 GAAGGACCGCAACAACCGAG 61.566 60.000 0.00 0.00 0.00 4.63
273 276 1.595929 GAAGGACCGCAACAACCGA 60.596 57.895 0.00 0.00 0.00 4.69
274 277 1.164041 AAGAAGGACCGCAACAACCG 61.164 55.000 0.00 0.00 0.00 4.44
275 278 0.591659 GAAGAAGGACCGCAACAACC 59.408 55.000 0.00 0.00 0.00 3.77
276 279 0.591659 GGAAGAAGGACCGCAACAAC 59.408 55.000 0.00 0.00 0.00 3.32
277 280 0.882927 CGGAAGAAGGACCGCAACAA 60.883 55.000 0.00 0.00 42.55 2.83
278 281 1.301401 CGGAAGAAGGACCGCAACA 60.301 57.895 0.00 0.00 42.55 3.33
281 284 3.462169 TTCGGAAGAAGGACCGCA 58.538 55.556 0.00 0.00 46.92 5.69
312 1995 3.623453 GCCTTGAGAATTAGTGGCTCCTT 60.623 47.826 0.00 0.00 37.58 3.36
334 2017 2.092267 TCATTCCATCCCACCATCACAG 60.092 50.000 0.00 0.00 0.00 3.66
355 2038 0.896923 TTACTGCGGATTACGGTGGT 59.103 50.000 0.00 0.00 44.51 4.16
357 2040 1.260561 GCATTACTGCGGATTACGGTG 59.739 52.381 0.00 0.00 44.51 4.94
358 2041 1.578583 GCATTACTGCGGATTACGGT 58.421 50.000 0.00 0.00 44.51 4.83
373 2056 1.286880 GGTGTCGCTGCTTTGCATT 59.713 52.632 0.00 0.00 38.13 3.56
386 2069 1.822506 GGCTAGGGAAACTTGGTGTC 58.177 55.000 0.00 0.00 0.00 3.67
447 2130 3.368427 GCCCATACTTCTTTTGCCTTTCC 60.368 47.826 0.00 0.00 0.00 3.13
509 2192 6.209391 AGCTTGGCAATATATGTTATTGACCC 59.791 38.462 0.00 6.72 41.13 4.46
512 2195 7.121168 GGCTAGCTTGGCAATATATGTTATTGA 59.879 37.037 15.72 0.00 37.15 2.57
514 2197 6.947733 TGGCTAGCTTGGCAATATATGTTATT 59.052 34.615 21.33 0.00 39.58 1.40
529 2212 3.603532 TCTGAATCACTTGGCTAGCTTG 58.396 45.455 15.72 7.59 0.00 4.01
535 2218 2.092538 CCTCCATCTGAATCACTTGGCT 60.093 50.000 2.65 0.00 0.00 4.75
560 2243 5.617252 TGAGAGGGACGAACTACAATTTTT 58.383 37.500 0.00 0.00 0.00 1.94
561 2244 5.221661 ACTGAGAGGGACGAACTACAATTTT 60.222 40.000 0.00 0.00 0.00 1.82
562 2245 4.283722 ACTGAGAGGGACGAACTACAATTT 59.716 41.667 0.00 0.00 0.00 1.82
563 2246 3.833070 ACTGAGAGGGACGAACTACAATT 59.167 43.478 0.00 0.00 0.00 2.32
564 2247 3.432378 ACTGAGAGGGACGAACTACAAT 58.568 45.455 0.00 0.00 0.00 2.71
597 2283 3.733443 AGAAAAATTGTGTGGAGGCAC 57.267 42.857 0.00 0.00 39.65 5.01
636 2322 4.488879 GGTAAAAATCTGCAAAGCTGAGG 58.511 43.478 4.94 0.00 39.64 3.86
637 2323 4.161333 CGGTAAAAATCTGCAAAGCTGAG 58.839 43.478 4.94 0.00 39.64 3.35
689 2375 1.554617 ACAACATATTTTGGGCTGGCC 59.445 47.619 14.23 14.23 0.00 5.36
690 2376 2.497273 AGACAACATATTTTGGGCTGGC 59.503 45.455 6.56 0.00 0.00 4.85
691 2377 4.019174 AGAGACAACATATTTTGGGCTGG 58.981 43.478 6.56 0.00 0.00 4.85
692 2378 4.201851 CGAGAGACAACATATTTTGGGCTG 60.202 45.833 6.56 0.00 0.00 4.85
699 2385 2.505819 AGGCCCGAGAGACAACATATTT 59.494 45.455 0.00 0.00 0.00 1.40
733 2419 2.892784 ATTCGGCCTAGCTACTGAAC 57.107 50.000 0.00 0.00 0.00 3.18
756 2442 1.742768 CTACCGCCCTAGAAGCTGG 59.257 63.158 0.00 3.03 0.00 4.85
778 2464 3.854669 AGATGAAGAGGCCCCGCG 61.855 66.667 0.00 0.00 0.00 6.46
781 2467 0.620556 TGTTCAGATGAAGAGGCCCC 59.379 55.000 0.00 0.00 34.27 5.80
782 2468 2.496899 TTGTTCAGATGAAGAGGCCC 57.503 50.000 0.00 0.00 34.27 5.80
796 2490 3.502595 GGGAGGACAGTTAGCTTTTGTTC 59.497 47.826 0.00 0.00 0.00 3.18
800 2494 1.354705 GGGGGAGGACAGTTAGCTTTT 59.645 52.381 0.00 0.00 0.00 2.27
803 2497 0.325765 GAGGGGGAGGACAGTTAGCT 60.326 60.000 0.00 0.00 0.00 3.32
804 2498 1.338890 GGAGGGGGAGGACAGTTAGC 61.339 65.000 0.00 0.00 0.00 3.09
805 2499 0.042731 TGGAGGGGGAGGACAGTTAG 59.957 60.000 0.00 0.00 0.00 2.34
807 2501 1.539124 GTGGAGGGGGAGGACAGTT 60.539 63.158 0.00 0.00 0.00 3.16
808 2502 1.153695 TAGTGGAGGGGGAGGACAGT 61.154 60.000 0.00 0.00 0.00 3.55
810 2504 1.390926 GTAGTGGAGGGGGAGGACA 59.609 63.158 0.00 0.00 0.00 4.02
811 2505 1.757340 CGTAGTGGAGGGGGAGGAC 60.757 68.421 0.00 0.00 0.00 3.85
812 2506 2.687902 CGTAGTGGAGGGGGAGGA 59.312 66.667 0.00 0.00 0.00 3.71
813 2507 3.155167 GCGTAGTGGAGGGGGAGG 61.155 72.222 0.00 0.00 0.00 4.30
814 2508 3.155167 GGCGTAGTGGAGGGGGAG 61.155 72.222 0.00 0.00 0.00 4.30
815 2509 4.000620 TGGCGTAGTGGAGGGGGA 62.001 66.667 0.00 0.00 0.00 4.81
816 2510 3.782443 GTGGCGTAGTGGAGGGGG 61.782 72.222 0.00 0.00 0.00 5.40
817 2511 3.000819 TGTGGCGTAGTGGAGGGG 61.001 66.667 0.00 0.00 0.00 4.79
827 2521 2.050714 CTACGACGTGTGTGGCGT 60.051 61.111 11.56 0.00 45.86 5.68
1065 2763 1.374190 GATGGCTGATGGCGGAGAT 59.626 57.895 0.00 0.00 42.94 2.75
1071 2769 2.903855 CGGGTGATGGCTGATGGC 60.904 66.667 0.00 0.00 40.90 4.40
1072 2770 2.903855 GCGGGTGATGGCTGATGG 60.904 66.667 0.00 0.00 0.00 3.51
1073 2771 2.124612 TGCGGGTGATGGCTGATG 60.125 61.111 0.00 0.00 0.00 3.07
1074 2772 2.124570 GTGCGGGTGATGGCTGAT 60.125 61.111 0.00 0.00 0.00 2.90
1075 2773 4.408821 GGTGCGGGTGATGGCTGA 62.409 66.667 0.00 0.00 0.00 4.26
1076 2774 4.415150 AGGTGCGGGTGATGGCTG 62.415 66.667 0.00 0.00 0.00 4.85
1077 2775 4.101448 GAGGTGCGGGTGATGGCT 62.101 66.667 0.00 0.00 0.00 4.75
1131 2829 0.040425 AAACGGCGTCAAAGATGCAC 60.040 50.000 15.17 2.49 45.37 4.57
1171 2924 0.669318 GACTGCCCGTGTCGATCAAA 60.669 55.000 0.00 0.00 0.00 2.69
1172 2925 1.080093 GACTGCCCGTGTCGATCAA 60.080 57.895 0.00 0.00 0.00 2.57
1173 2926 2.571757 GACTGCCCGTGTCGATCA 59.428 61.111 0.00 0.00 0.00 2.92
1194 2951 1.064906 GGGTTAGGCTAACAACCTCCC 60.065 57.143 31.99 21.82 43.17 4.30
1273 3030 2.755952 AAAGAAAAGCTGTGGACCCT 57.244 45.000 0.00 0.00 0.00 4.34
1276 3033 5.230182 CCCATAAAAAGAAAAGCTGTGGAC 58.770 41.667 0.00 0.00 0.00 4.02
1301 3078 4.813161 CCAGAATCAGCTCATCGTTAATGT 59.187 41.667 0.00 0.00 36.68 2.71
1308 3085 2.591571 TCACCAGAATCAGCTCATCG 57.408 50.000 0.00 0.00 0.00 3.84
1355 3132 6.165577 GGCCAAACACAATTTCATTAGTGAT 58.834 36.000 0.00 0.00 35.97 3.06
1356 3133 5.537188 GGCCAAACACAATTTCATTAGTGA 58.463 37.500 0.00 0.00 35.97 3.41
1357 3134 4.385447 CGGCCAAACACAATTTCATTAGTG 59.615 41.667 2.24 0.00 37.95 2.74
1358 3135 4.038642 ACGGCCAAACACAATTTCATTAGT 59.961 37.500 2.24 0.00 0.00 2.24
1359 3136 4.555262 ACGGCCAAACACAATTTCATTAG 58.445 39.130 2.24 0.00 0.00 1.73
1360 3137 4.038042 TGACGGCCAAACACAATTTCATTA 59.962 37.500 2.24 0.00 0.00 1.90
1379 3169 1.471287 TCAGTCGATGTTACCCTGACG 59.529 52.381 0.00 0.00 34.82 4.35
1480 3286 8.333908 GTGATAAAGTGCTTGTCTAGATGATTG 58.666 37.037 0.00 0.00 0.00 2.67
1507 3313 1.253116 CGATTGTTGCAGCATCGTTG 58.747 50.000 19.41 5.88 0.00 4.10
1510 3316 0.443478 TCACGATTGTTGCAGCATCG 59.557 50.000 23.17 23.17 40.21 3.84
1727 3533 4.514066 CCTACTTATTGGACGGTAAATGGC 59.486 45.833 0.00 0.00 0.00 4.40
1728 3534 5.920903 TCCTACTTATTGGACGGTAAATGG 58.079 41.667 0.00 0.00 0.00 3.16
1729 3535 8.342634 CAATTCCTACTTATTGGACGGTAAATG 58.657 37.037 0.00 0.00 31.24 2.32
1730 3536 8.050930 ACAATTCCTACTTATTGGACGGTAAAT 58.949 33.333 0.00 0.00 36.34 1.40
1775 3612 5.359009 AGAAAGAGTTGCCCACAATCATATG 59.641 40.000 0.00 0.00 38.27 1.78
1795 3632 8.522178 ACGACACAAACATTAAACAAAAGAAA 57.478 26.923 0.00 0.00 0.00 2.52
1797 3634 7.425882 CGTACGACACAAACATTAAACAAAAGA 59.574 33.333 10.44 0.00 0.00 2.52
1810 3647 2.337644 CGTCTGATCGTACGACACAAAC 59.662 50.000 22.14 18.20 41.55 2.93
1818 3655 1.062148 TCTCAAGCGTCTGATCGTACG 59.938 52.381 9.53 9.53 41.92 3.67
1824 3661 3.937706 CTCCAAAATCTCAAGCGTCTGAT 59.062 43.478 0.00 0.00 0.00 2.90
1825 3662 3.329386 CTCCAAAATCTCAAGCGTCTGA 58.671 45.455 0.00 0.00 0.00 3.27
1944 3781 0.400213 TGGACACAACACATCCTCCC 59.600 55.000 0.00 0.00 33.34 4.30
1955 3792 0.176910 TCAGCGACAAGTGGACACAA 59.823 50.000 5.14 0.00 0.00 3.33
1979 3816 2.961531 TAAGGTGGCAAGGTTTAGCA 57.038 45.000 0.00 0.00 0.00 3.49
1985 3822 2.619590 CGGGTAATTAAGGTGGCAAGGT 60.620 50.000 0.00 0.00 0.00 3.50
2131 3971 3.667960 GCTTTGCCACTCTAACATTGTCG 60.668 47.826 0.00 0.00 0.00 4.35
2271 4111 9.719279 ATTTTTGACAAAAGCACACAATTATTG 57.281 25.926 12.84 3.07 35.30 1.90
2272 4112 9.934190 GATTTTTGACAAAAGCACACAATTATT 57.066 25.926 12.84 0.00 38.05 1.40
2322 4162 4.479786 AAGAGTACAGAAGGAGATTGGC 57.520 45.455 0.00 0.00 0.00 4.52
2330 4170 9.250624 GCTGTTTATACATAAGAGTACAGAAGG 57.749 37.037 12.51 0.00 32.86 3.46
2334 4174 7.868415 GGGAGCTGTTTATACATAAGAGTACAG 59.132 40.741 0.00 0.00 33.62 2.74
2335 4175 7.343574 TGGGAGCTGTTTATACATAAGAGTACA 59.656 37.037 0.00 0.00 32.86 2.90
2336 4176 7.652507 GTGGGAGCTGTTTATACATAAGAGTAC 59.347 40.741 0.00 0.00 32.86 2.73
2337 4177 7.469594 CGTGGGAGCTGTTTATACATAAGAGTA 60.470 40.741 0.00 0.00 32.86 2.59
2338 4178 6.583562 GTGGGAGCTGTTTATACATAAGAGT 58.416 40.000 0.00 0.00 32.86 3.24
2339 4179 5.692204 CGTGGGAGCTGTTTATACATAAGAG 59.308 44.000 0.00 0.00 32.86 2.85
2363 4203 5.235186 CACCTATGCTGAGTTAGTACAATGC 59.765 44.000 0.00 0.00 0.00 3.56
2364 4204 6.834959 CACCTATGCTGAGTTAGTACAATG 57.165 41.667 0.00 0.00 0.00 2.82
2633 5081 2.798283 TCAGCGTACACTAAACAACAGC 59.202 45.455 0.00 0.00 0.00 4.40
2741 5197 5.707298 GCATAATAGGACTGCATTGTGGTAT 59.293 40.000 0.00 0.00 35.96 2.73
2747 5203 6.916387 CAGAAAAGCATAATAGGACTGCATTG 59.084 38.462 0.00 0.00 38.37 2.82
2748 5204 6.604795 ACAGAAAAGCATAATAGGACTGCATT 59.395 34.615 0.00 0.00 38.37 3.56
2810 5266 3.959535 ACATGCATAAAAGGGGTGTTG 57.040 42.857 0.00 0.00 0.00 3.33
2879 5339 8.803799 CAAATACCGCAACCTAAATGATAAAAC 58.196 33.333 0.00 0.00 0.00 2.43
3001 5478 3.876914 CTGAGTGCAGTGAACCAGTAAAA 59.123 43.478 0.00 0.00 37.37 1.52
3005 5482 1.123077 TCTGAGTGCAGTGAACCAGT 58.877 50.000 15.44 0.00 42.84 4.00
3174 5653 2.162408 GCTCCACTGACAATAACCTTGC 59.838 50.000 0.00 0.00 0.00 4.01
3502 5987 4.697352 CCAGAAATTACAAGTGCTACAGCT 59.303 41.667 2.44 0.00 42.66 4.24
3611 6096 0.249911 ATCCTAATTCGCCCGCAGTC 60.250 55.000 0.00 0.00 0.00 3.51
3613 6098 2.002586 CATATCCTAATTCGCCCGCAG 58.997 52.381 0.00 0.00 0.00 5.18
3635 6120 1.344942 CTTCCGCGGAAACAGAGTCG 61.345 60.000 37.62 21.51 33.34 4.18
3647 6132 2.100216 CCGCCAATTTCTTCCGCG 59.900 61.111 0.00 0.00 42.37 6.46
3649 6134 1.154035 GCACCGCCAATTTCTTCCG 60.154 57.895 0.00 0.00 0.00 4.30
3715 6236 5.124457 TCAAAGCAGATATGTTGAGAAAGCC 59.876 40.000 0.00 0.00 0.00 4.35
3739 6260 6.620877 TTTGGACAACAGTCACCTATAGAT 57.379 37.500 0.00 0.00 33.90 1.98
3883 6404 7.401060 TGTATGGATATTGGTTTCCACCTAT 57.599 36.000 0.00 0.00 44.49 2.57
3903 6424 9.851686 TGGAGCATGACTAATAAAAAGATGTAT 57.148 29.630 0.00 0.00 0.00 2.29
3905 6426 8.757982 ATGGAGCATGACTAATAAAAAGATGT 57.242 30.769 0.00 0.00 0.00 3.06
4131 6662 7.765695 ATCATTTGTAACCTCATGTTTCAGT 57.234 32.000 0.00 0.00 35.91 3.41
4262 6800 8.776119 CACTCCATCTATCCTTATATCCCAATT 58.224 37.037 0.00 0.00 0.00 2.32
4326 6911 9.401058 AGAGGAATGGAACTCTAACAAATAATG 57.599 33.333 0.00 0.00 0.00 1.90
4369 6973 5.049060 CAGGAACACGGTTCACATATCAAAA 60.049 40.000 15.57 0.00 0.00 2.44
4459 7139 7.119116 TGCATAATTGACGAACAACAGATAGTT 59.881 33.333 0.00 0.00 41.52 2.24
4576 7256 7.667575 TCAGCATAGAGGGAAGATATTATCC 57.332 40.000 0.00 0.22 34.85 2.59
4717 7560 4.764823 GGATTTCCACACCTATTGACAACA 59.235 41.667 0.00 0.00 35.64 3.33
4746 7589 6.129009 GCATAAACAGACATTGTCAAAGCTTG 60.129 38.462 18.57 9.31 39.73 4.01
4794 7637 9.788960 GTAACAGTATATTCGCATCATATCAGA 57.211 33.333 0.00 0.00 0.00 3.27
4833 9645 4.439057 ACGTAGCATTTTCGTGGTATCAT 58.561 39.130 0.00 0.00 36.46 2.45
5025 9838 5.075344 AGGGAAAAAGGTTAAGTGGGACATA 59.925 40.000 0.00 0.00 44.52 2.29
5026 9839 4.140782 AGGGAAAAAGGTTAAGTGGGACAT 60.141 41.667 0.00 0.00 44.52 3.06
5027 9840 3.205733 AGGGAAAAAGGTTAAGTGGGACA 59.794 43.478 0.00 0.00 0.00 4.02
5088 9901 4.332543 TCAACCCGTAGTACAGTACATACG 59.667 45.833 22.71 22.71 40.41 3.06
5189 10006 4.421058 CTTTGCCATGATGATCTGTGTTG 58.579 43.478 0.00 0.00 0.00 3.33
5395 11509 5.009610 ACACAGTACCACAAATCCACAAATC 59.990 40.000 0.00 0.00 0.00 2.17
5396 11510 4.892934 ACACAGTACCACAAATCCACAAAT 59.107 37.500 0.00 0.00 0.00 2.32
5399 11513 3.569194 ACACAGTACCACAAATCCACA 57.431 42.857 0.00 0.00 0.00 4.17
5400 11514 5.121768 GTGATACACAGTACCACAAATCCAC 59.878 44.000 0.00 0.00 34.08 4.02
5402 11516 5.242434 TGTGATACACAGTACCACAAATCC 58.758 41.667 1.97 0.00 39.62 3.01
5427 11566 5.582665 GGACGAGCAAGTCTCTCAATTTATT 59.417 40.000 10.65 0.00 40.76 1.40
5432 11571 1.895798 TGGACGAGCAAGTCTCTCAAT 59.104 47.619 10.65 0.00 40.76 2.57
5434 11573 0.884514 CTGGACGAGCAAGTCTCTCA 59.115 55.000 10.65 1.59 40.76 3.27
5457 11596 6.265196 TCAAGACCAGCTTTGTTTCACATAAT 59.735 34.615 0.00 0.00 33.60 1.28
5467 11606 3.515602 ATCCTTCAAGACCAGCTTTGT 57.484 42.857 0.00 0.00 33.60 2.83
5484 11623 7.729116 ACAAACATCAATATGATTCCCAATCC 58.271 34.615 0.00 0.00 34.28 3.01
5499 11638 7.598278 ACACAACAGAGTTTTACAAACATCAA 58.402 30.769 2.38 0.00 0.00 2.57
5508 11647 6.846325 AGAGCTAACACAACAGAGTTTTAC 57.154 37.500 0.00 0.00 0.00 2.01
5527 11666 7.431668 CAGCTATCTTAATGAAAAGCAAAGAGC 59.568 37.037 0.00 0.00 46.19 4.09
5528 11667 8.457261 ACAGCTATCTTAATGAAAAGCAAAGAG 58.543 33.333 0.00 0.00 39.07 2.85
5529 11668 8.340618 ACAGCTATCTTAATGAAAAGCAAAGA 57.659 30.769 0.00 0.00 39.07 2.52
5530 11669 8.976986 AACAGCTATCTTAATGAAAAGCAAAG 57.023 30.769 0.00 0.00 39.07 2.77
5533 11672 7.885297 ACAAACAGCTATCTTAATGAAAAGCA 58.115 30.769 0.00 0.00 39.07 3.91
5540 11679 9.683069 AAACTCAAACAAACAGCTATCTTAATG 57.317 29.630 0.00 0.00 0.00 1.90
5550 11689 3.062504 CCAAGCAAACTCAAACAAACAGC 59.937 43.478 0.00 0.00 0.00 4.40
5554 11693 4.221703 TCCTTCCAAGCAAACTCAAACAAA 59.778 37.500 0.00 0.00 0.00 2.83
5555 11694 3.766591 TCCTTCCAAGCAAACTCAAACAA 59.233 39.130 0.00 0.00 0.00 2.83
5556 11695 3.360867 TCCTTCCAAGCAAACTCAAACA 58.639 40.909 0.00 0.00 0.00 2.83
5557 11696 4.037923 TCATCCTTCCAAGCAAACTCAAAC 59.962 41.667 0.00 0.00 0.00 2.93
5558 11697 4.037923 GTCATCCTTCCAAGCAAACTCAAA 59.962 41.667 0.00 0.00 0.00 2.69
5559 11698 3.569701 GTCATCCTTCCAAGCAAACTCAA 59.430 43.478 0.00 0.00 0.00 3.02
5560 11699 3.149196 GTCATCCTTCCAAGCAAACTCA 58.851 45.455 0.00 0.00 0.00 3.41
5561 11700 3.149196 TGTCATCCTTCCAAGCAAACTC 58.851 45.455 0.00 0.00 0.00 3.01
5562 11701 3.228188 TGTCATCCTTCCAAGCAAACT 57.772 42.857 0.00 0.00 0.00 2.66
5563 11702 4.525912 AATGTCATCCTTCCAAGCAAAC 57.474 40.909 0.00 0.00 0.00 2.93
5604 11743 2.481854 TGCCAACAATGCAAACACATC 58.518 42.857 0.00 0.00 35.40 3.06
5625 11764 3.096852 TGTGACGGGTAAGAGATGATGT 58.903 45.455 0.00 0.00 0.00 3.06
5630 11769 1.204941 GTGCTGTGACGGGTAAGAGAT 59.795 52.381 0.00 0.00 0.00 2.75
5644 11783 2.237392 GGATGAAGGGAGTAAGTGCTGT 59.763 50.000 0.00 0.00 0.00 4.40
5653 11792 6.789959 GCCCTATATATATGGATGAAGGGAGT 59.210 42.308 22.53 0.00 44.39 3.85
5654 11793 6.214412 GGCCCTATATATATGGATGAAGGGAG 59.786 46.154 22.53 3.45 44.39 4.30
5655 11794 6.091555 GGCCCTATATATATGGATGAAGGGA 58.908 44.000 22.53 0.00 44.39 4.20
5656 11795 6.094302 AGGCCCTATATATATGGATGAAGGG 58.906 44.000 16.99 16.99 44.43 3.95
5660 11799 7.738984 TGCATTAGGCCCTATATATATGGATGA 59.261 37.037 16.00 3.46 43.89 2.92
5678 11817 4.479619 GCAGTCTTGAAAAGTGCATTAGG 58.520 43.478 0.00 0.00 46.34 2.69
5686 11825 5.859205 AATCAAAGGCAGTCTTGAAAAGT 57.141 34.783 0.00 0.00 46.34 2.66
5692 11831 6.320171 CACTCAATAATCAAAGGCAGTCTTG 58.680 40.000 0.00 0.00 35.55 3.02
5700 11839 5.088739 GTCAACGCACTCAATAATCAAAGG 58.911 41.667 0.00 0.00 0.00 3.11
5716 11855 2.443387 CATGCATATGTGTGTCAACGC 58.557 47.619 0.00 0.00 37.32 4.84
5748 11887 3.186909 TGTAATGTATCAGTGCGTGCTC 58.813 45.455 0.00 0.00 0.00 4.26
5757 11896 5.614308 TCCAGGCAAGATGTAATGTATCAG 58.386 41.667 0.00 0.00 0.00 2.90
5760 11899 5.073554 TCCATCCAGGCAAGATGTAATGTAT 59.926 40.000 13.59 0.00 39.62 2.29
5761 11900 4.411869 TCCATCCAGGCAAGATGTAATGTA 59.588 41.667 13.59 0.00 39.62 2.29
5763 11902 3.824133 TCCATCCAGGCAAGATGTAATG 58.176 45.455 13.59 1.81 39.62 1.90
5765 11904 3.459227 TGATCCATCCAGGCAAGATGTAA 59.541 43.478 13.59 4.53 39.62 2.41
5766 11905 3.047857 TGATCCATCCAGGCAAGATGTA 58.952 45.455 13.59 1.25 39.62 2.29
5767 11906 1.848388 TGATCCATCCAGGCAAGATGT 59.152 47.619 13.59 0.00 39.62 3.06
5768 11907 2.651382 TGATCCATCCAGGCAAGATG 57.349 50.000 9.18 9.18 40.71 2.90
5769 11908 2.987437 AGATGATCCATCCAGGCAAGAT 59.013 45.455 3.55 0.00 41.36 2.40
5770 11909 2.415624 AGATGATCCATCCAGGCAAGA 58.584 47.619 3.55 0.00 41.36 3.02
5771 11910 2.953284 AGATGATCCATCCAGGCAAG 57.047 50.000 3.55 0.00 41.36 4.01
5772 11911 5.329191 AAATAGATGATCCATCCAGGCAA 57.671 39.130 3.55 0.00 41.36 4.52
5773 11912 5.310331 TGTAAATAGATGATCCATCCAGGCA 59.690 40.000 3.55 0.00 41.36 4.75
5774 11913 5.645497 GTGTAAATAGATGATCCATCCAGGC 59.355 44.000 3.55 0.00 41.36 4.85
5775 11914 7.013823 AGTGTAAATAGATGATCCATCCAGG 57.986 40.000 3.55 0.00 41.36 4.45
5776 11915 8.811017 ACTAGTGTAAATAGATGATCCATCCAG 58.189 37.037 0.00 0.00 41.36 3.86
5777 11916 8.727100 ACTAGTGTAAATAGATGATCCATCCA 57.273 34.615 0.00 0.00 41.36 3.41
5778 11917 9.030452 AGACTAGTGTAAATAGATGATCCATCC 57.970 37.037 0.00 0.00 41.36 3.51
5779 11918 9.853555 CAGACTAGTGTAAATAGATGATCCATC 57.146 37.037 0.00 0.00 36.42 3.51
5780 11919 9.373450 ACAGACTAGTGTAAATAGATGATCCAT 57.627 33.333 0.00 0.00 36.42 3.41
5781 11920 8.768501 ACAGACTAGTGTAAATAGATGATCCA 57.231 34.615 0.00 0.00 36.42 3.41
5786 11925 9.619316 GCTGATACAGACTAGTGTAAATAGATG 57.381 37.037 0.00 0.00 36.51 2.90
5787 11926 8.508062 CGCTGATACAGACTAGTGTAAATAGAT 58.492 37.037 0.00 0.00 36.51 1.98
5788 11927 7.713942 TCGCTGATACAGACTAGTGTAAATAGA 59.286 37.037 0.00 0.00 36.51 1.98
5789 11928 7.862648 TCGCTGATACAGACTAGTGTAAATAG 58.137 38.462 0.00 0.00 36.51 1.73
5790 11929 7.498239 ACTCGCTGATACAGACTAGTGTAAATA 59.502 37.037 0.00 0.00 36.51 1.40
5791 11930 6.319152 ACTCGCTGATACAGACTAGTGTAAAT 59.681 38.462 0.00 0.00 36.51 1.40
5792 11931 5.646793 ACTCGCTGATACAGACTAGTGTAAA 59.353 40.000 0.00 0.00 36.51 2.01
5804 11943 2.477863 CGACATGACACTCGCTGATACA 60.478 50.000 0.00 0.00 0.00 2.29
5807 11946 0.179127 CCGACATGACACTCGCTGAT 60.179 55.000 0.00 0.00 0.00 2.90
5811 11950 1.344942 GACACCGACATGACACTCGC 61.345 60.000 0.00 0.00 0.00 5.03
5812 11951 0.039527 TGACACCGACATGACACTCG 60.040 55.000 0.00 0.00 0.00 4.18
5816 11955 0.885196 TCGATGACACCGACATGACA 59.115 50.000 0.00 0.00 0.00 3.58
5817 11956 1.135373 ACTCGATGACACCGACATGAC 60.135 52.381 0.00 0.00 32.18 3.06
5820 11959 1.404181 CCAACTCGATGACACCGACAT 60.404 52.381 0.00 0.00 32.18 3.06
5821 11960 0.038618 CCAACTCGATGACACCGACA 60.039 55.000 0.00 0.00 32.18 4.35
5822 11961 0.736325 CCCAACTCGATGACACCGAC 60.736 60.000 0.00 0.00 32.18 4.79
5824 11963 0.736325 GACCCAACTCGATGACACCG 60.736 60.000 0.00 0.00 0.00 4.94
5825 11964 0.320374 TGACCCAACTCGATGACACC 59.680 55.000 0.00 0.00 0.00 4.16
5826 11965 2.163818 TTGACCCAACTCGATGACAC 57.836 50.000 0.00 0.00 0.00 3.67
5834 11975 1.692411 ACAAGCCTTTGACCCAACTC 58.308 50.000 0.00 0.00 37.73 3.01
5839 11980 1.202891 ACCACTACAAGCCTTTGACCC 60.203 52.381 0.00 0.00 37.73 4.46
5866 12007 1.315981 TGGTCGTGGCTTGCACAAAA 61.316 50.000 0.00 0.00 0.00 2.44
5873 12014 1.507141 GAGTTGGTGGTCGTGGCTTG 61.507 60.000 0.00 0.00 0.00 4.01
5874 12015 1.227853 GAGTTGGTGGTCGTGGCTT 60.228 57.895 0.00 0.00 0.00 4.35
5875 12016 2.100879 GAGAGTTGGTGGTCGTGGCT 62.101 60.000 0.00 0.00 0.00 4.75
5876 12017 1.668151 GAGAGTTGGTGGTCGTGGC 60.668 63.158 0.00 0.00 0.00 5.01
5881 12036 2.894126 TCTCTCTTGAGAGTTGGTGGTC 59.106 50.000 22.34 0.00 43.73 4.02
5903 12058 2.292794 TAGTGGTTCGCTCCGATGGC 62.293 60.000 0.00 0.00 35.23 4.40
5909 12064 2.674796 AATGAGTAGTGGTTCGCTCC 57.325 50.000 0.00 0.00 0.00 4.70
5912 12067 3.994392 TCAGAAAATGAGTAGTGGTTCGC 59.006 43.478 0.00 0.00 32.77 4.70
5931 12095 1.622811 AGTTGGTGGCTCTCTTCTCAG 59.377 52.381 0.00 0.00 0.00 3.35
5935 12099 2.289945 ACATGAGTTGGTGGCTCTCTTC 60.290 50.000 0.00 0.00 34.30 2.87
5942 12106 1.317613 TCAACACATGAGTTGGTGGC 58.682 50.000 28.29 0.00 46.74 5.01
5955 12119 5.947228 TTGGAATCACTTGATCTCAACAC 57.053 39.130 0.00 0.00 32.75 3.32
5983 12147 7.410120 AGGCTAGAAATCAAGGTTTAAATGG 57.590 36.000 0.00 0.00 0.00 3.16
5989 12153 4.344978 GGGAAGGCTAGAAATCAAGGTTT 58.655 43.478 0.00 0.00 0.00 3.27
5995 12159 3.333680 ACTTTGGGGAAGGCTAGAAATCA 59.666 43.478 0.00 0.00 39.79 2.57
6006 12170 5.538433 TGAATGGAAAGTAACTTTGGGGAAG 59.462 40.000 0.00 0.00 41.32 3.46
6013 12177 5.476945 AGCGGATTGAATGGAAAGTAACTTT 59.523 36.000 0.00 0.00 36.29 2.66
6019 12183 3.054802 AGAGAGCGGATTGAATGGAAAGT 60.055 43.478 0.00 0.00 0.00 2.66
6024 12188 4.635223 TGATAAGAGAGCGGATTGAATGG 58.365 43.478 0.00 0.00 0.00 3.16
6035 12199 3.625313 GGACTTGGCTTTGATAAGAGAGC 59.375 47.826 0.00 0.00 32.92 4.09
6041 12205 3.007506 TCTCACGGACTTGGCTTTGATAA 59.992 43.478 0.00 0.00 0.00 1.75
6044 12208 0.756294 TCTCACGGACTTGGCTTTGA 59.244 50.000 0.00 0.00 0.00 2.69
6054 12218 2.128035 CTCAAACACACTCTCACGGAC 58.872 52.381 0.00 0.00 0.00 4.79
6056 12220 1.860950 CACTCAAACACACTCTCACGG 59.139 52.381 0.00 0.00 0.00 4.94
6057 12221 2.540515 ACACTCAAACACACTCTCACG 58.459 47.619 0.00 0.00 0.00 4.35
6065 12229 1.409521 CCTCCCCAACACTCAAACACA 60.410 52.381 0.00 0.00 0.00 3.72
6085 12249 5.633830 TTCTCTTGTCTTCAAATGATGGC 57.366 39.130 0.00 0.00 32.87 4.40
6087 12251 8.512956 ACTCATTTCTCTTGTCTTCAAATGATG 58.487 33.333 5.99 4.27 40.76 3.07
6106 12270 6.493115 TGGTGTTATTGATGGTGAACTCATTT 59.507 34.615 0.00 0.00 0.00 2.32
6109 12273 4.979335 TGGTGTTATTGATGGTGAACTCA 58.021 39.130 0.00 0.00 0.00 3.41
6117 12281 7.587037 AGGTAATTGATGGTGTTATTGATGG 57.413 36.000 0.00 0.00 0.00 3.51
6134 12298 5.061721 ACACCACTCTCCAAAAGGTAATT 57.938 39.130 0.00 0.00 0.00 1.40
6159 12323 5.178797 CAAGTGACACCTAACCAATCTAGG 58.821 45.833 0.84 0.00 41.61 3.02
6180 12344 1.075601 ACAATCTTGGAGGCTCCCAA 58.924 50.000 30.03 21.27 43.42 4.12
6190 12354 5.278463 CCTTGGTTCAACTACACAATCTTGG 60.278 44.000 0.00 0.00 0.00 3.61
6201 12365 6.059484 CCTTACAAACTCCTTGGTTCAACTA 58.941 40.000 0.00 0.00 39.56 2.24
6227 12391 4.851843 TCACGAAGTAGGTGATCTCCTTA 58.148 43.478 20.90 5.45 41.61 2.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.