AutoCloner

Multiple sequence alignment - TraesCS6B01G010100

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS6B01G010100	chr6B	100.000	3104	0	0	1	3104	6196294	6193191	0.000000e+00	5733.0
1	TraesCS6B01G010100	chr6D	94.847	2445	89	10	689	3104	3026431	3023995	0.000000e+00	3783.0
2	TraesCS6B01G010100	chr6D	95.665	692	29	1	1	691	3027184	3026493	0.000000e+00	1110.0
3	TraesCS6B01G010100	chr6A	88.487	747	81	3	2348	3093	1961964	1962706	0.000000e+00	898.0
4	TraesCS6B01G010100	chr6A	90.774	607	34	15	1200	1788	1960859	1961461	0.000000e+00	791.0
5	TraesCS6B01G010100	chr6A	88.060	402	25	9	1965	2351	1961530	1961923	3.650000e-124	455.0
6	TraesCS6B01G010100	chr6A	89.235	353	23	8	817	1168	1960525	1960863	7.950000e-116	427.0
7	TraesCS6B01G010100	chr3B	84.392	551	56	15	1269	1793	228209574	228209028	5.940000e-142	514.0
8	TraesCS6B01G010100	chr3B	79.803	406	33	23	1955	2351	228208939	228208574	1.850000e-62	250.0
9	TraesCS6B01G010100	chr3B	90.374	187	13	3	960	1146	228209906	228209725	1.110000e-59	241.0
10	TraesCS6B01G010100	chr3B	89.231	65	4	1	799	860	228210065	228210001	9.230000e-11	78.7
11	TraesCS6B01G010100	chr3A	82.830	530	73	14	1266	1788	171137732	171138250	2.820000e-125	459.0
12	TraesCS6B01G010100	chr3A	90.221	317	28	1	1477	1793	171173807	171174120	8.010000e-111	411.0
13	TraesCS6B01G010100	chr3A	90.374	187	13	4	960	1146	171173271	171173452	1.110000e-59	241.0
14	TraesCS6B01G010100	chr3A	88.439	173	10	2	1955	2121	171174209	171174377	1.890000e-47	200.0
15	TraesCS6B01G010100	chr3A	89.796	147	12	1	997	1143	171137514	171137657	5.290000e-43	185.0
16	TraesCS6B01G010100	chr3A	91.892	111	8	1	559	668	697447777	697447667	1.490000e-33	154.0
17	TraesCS6B01G010100	chr3A	82.955	88	13	2	1806	1892	100348359	100348273	9.230000e-11	78.7
18	TraesCS6B01G010100	chr3A	90.323	62	3	1	799	857	171173128	171173189	9.230000e-11	78.7
19	TraesCS6B01G010100	chr3D	91.483	317	24	1	1477	1793	157102660	157102347	1.710000e-117	433.0
20	TraesCS6B01G010100	chr3D	79.356	528	68	20	1269	1788	157180178	157179684	1.780000e-87	333.0
21	TraesCS6B01G010100	chr3D	80.838	334	38	13	1955	2286	157102259	157101950	4.000000e-59	239.0
22	TraesCS6B01G010100	chr7A	85.326	368	50	1	1	364	540756023	540755656	8.130000e-101	377.0
23	TraesCS6B01G010100	chr7A	83.912	317	47	2	3	315	540771908	540771592	1.810000e-77	300.0
24	TraesCS6B01G010100	chr7A	84.364	275	43	0	1	275	539853284	539853010	1.420000e-68	270.0
25	TraesCS6B01G010100	chr7D	84.595	370	49	3	3	366	459465936	459466303	8.180000e-96	361.0
26	TraesCS6B01G010100	chr7D	83.243	370	54	2	1	362	459433105	459433474	1.780000e-87	333.0
27	TraesCS6B01G010100	chr7D	83.146	356	56	2	1	352	459607358	459607713	3.860000e-84	322.0
28	TraesCS6B01G010100	chr7D	85.455	275	40	0	1	275	459746402	459746676	1.410000e-73	287.0
29	TraesCS6B01G010100	chr7B	84.469	367	51	3	3	364	481617561	481617926	1.060000e-94	357.0
30	TraesCS6B01G010100	chr5D	86.817	311	38	1	1477	1787	62528176	62528483	8.240000e-91	344.0
31	TraesCS6B01G010100	chr5D	84.713	157	16	5	1956	2104	62531094	62531250	1.930000e-32	150.0
32	TraesCS6B01G010100	chr4D	94.393	107	5	1	559	665	83148099	83148204	2.480000e-36	163.0
33	TraesCS6B01G010100	chr4B	94.393	107	5	1	559	665	117778785	117778890	2.480000e-36	163.0
34	TraesCS6B01G010100	chr4A	92.241	116	8	1	559	674	560995473	560995587	2.480000e-36	163.0
35	TraesCS6B01G010100	chr2D	93.519	108	7	0	559	666	335687006	335687113	8.910000e-36	161.0
36	TraesCS6B01G010100	chr2A	92.593	108	8	0	559	666	446069287	446069394	4.140000e-34	156.0
37	TraesCS6B01G010100	chr2B	91.667	108	9	0	559	666	403699384	403699491	1.930000e-32	150.0
38	TraesCS6B01G010100	chr2B	89.474	57	6	0	1808	1864	66951390	66951446	4.290000e-09	73.1
39	TraesCS6B01G010100	chr1B	90.826	109	10	0	557	665	406351871	406351979	2.490000e-31	147.0
40	TraesCS6B01G010100	chr1B	82.955	88	15	0	1805	1892	16670971	16671058	2.570000e-11	80.5
41	TraesCS6B01G010100	chr1B	80.682	88	17	0	1805	1892	16508718	16508805	5.550000e-08	69.4
42	TraesCS6B01G010100	chr1B	100.000	35	0	0	1808	1842	367603279	367603313	7.180000e-07	65.8
43	TraesCS6B01G010100	chr1D	82.022	89	14	2	1805	1892	11138289	11138376	1.190000e-09	75.0
44	TraesCS6B01G010100	chr1A	82.418	91	8	7	1808	1892	61250968	61250880	4.290000e-09	73.1
45	TraesCS6B01G010100	chr1A	79.545	88	18	0	1805	1892	13295568	13295655	2.580000e-06	63.9

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS6B01G010100	chr6B	6193191	6196294	3103	True	5733.000	5733	100.00000	1	3104	1	chr6B.!!$R1	3103
1	TraesCS6B01G010100	chr6D	3023995	3027184	3189	True	2446.500	3783	95.25600	1	3104	2	chr6D.!!$R1	3103
2	TraesCS6B01G010100	chr6A	1960525	1962706	2181	False	642.750	898	89.13900	817	3093	4	chr6A.!!$F1	2276
3	TraesCS6B01G010100	chr3B	228208574	228210065	1491	True	270.925	514	85.95000	799	2351	4	chr3B.!!$R1	1552
4	TraesCS6B01G010100	chr3A	171137514	171138250	736	False	322.000	459	86.31300	997	1788	2	chr3A.!!$F1	791
5	TraesCS6B01G010100	chr3A	171173128	171174377	1249	False	232.675	411	89.83925	799	2121	4	chr3A.!!$F2	1322
6	TraesCS6B01G010100	chr3D	157101950	157102660	710	True	336.000	433	86.16050	1477	2286	2	chr3D.!!$R2	809
7	TraesCS6B01G010100	chr5D	62528176	62531250	3074	False	247.000	344	85.76500	1477	2104	2	chr5D.!!$F1	627

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
477	478	0.099968	TCGGCGTCCATCGAAACTAG	59.9	55.0	6.85	0.0	42.86	2.57	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2261	4991	0.25589	ACACCTGCACACCTGAAGTT	59.744	50.0	0.0	0.0	0.0	2.66	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
44	45	2.741985	TCCAGCGCAATCACACGG	60.742	61.111	11.47	0.00	0.00	4.94
95	96	1.689959	GCCACTCGCAAACATCAAAG	58.310	50.000	0.00	0.00	37.47	2.77
100	101	3.003689	CACTCGCAAACATCAAAGGACTT	59.996	43.478	0.00	0.00	0.00	3.01
101	102	4.213270	CACTCGCAAACATCAAAGGACTTA	59.787	41.667	0.00	0.00	0.00	2.24
124	125	3.002791	TGCTCCATGAAGCTAAAACTCG	58.997	45.455	5.24	0.00	42.94	4.18
164	165	0.540597	ACTTGAAGCAAAGGAGGGCC	60.541	55.000	0.00	0.00	0.00	5.80
181	182	3.525199	AGGGCCTGTCTATCATTTTCAGT	59.475	43.478	4.50	0.00	0.00	3.41
203	204	0.254178	CCTTGCAGATGGCTAGTGGT	59.746	55.000	0.00	0.00	42.80	4.16
230	231	4.151883	TGCAAAGGAAGCAAAAGAGGTAT	58.848	39.130	0.00	0.00	39.39	2.73
280	281	1.452651	CGGAAGATGGCATGGCTGT	60.453	57.895	21.08	9.13	0.00	4.40
281	282	1.721664	CGGAAGATGGCATGGCTGTG	61.722	60.000	21.08	0.00	0.00	3.66
286	287	0.820891	GATGGCATGGCTGTGGTAGG	60.821	60.000	21.08	0.00	0.00	3.18
291	292	1.651987	CATGGCTGTGGTAGGTTACG	58.348	55.000	0.00	0.00	0.00	3.18
346	347	3.003897	GCAGGAGGATGTCTAAGTACTCG	59.996	52.174	0.00	0.00	0.00	4.18
354	355	2.089980	GTCTAAGTACTCGGCTGTGGA	58.910	52.381	0.00	0.00	0.00	4.02
453	454	5.898606	CACGACTTGCTTTTGAATCGATATC	59.101	40.000	0.00	0.00	33.88	1.63
459	460	6.228273	TGCTTTTGAATCGATATCGGATTC	57.772	37.500	26.31	26.31	40.29	2.52
471	472	2.415843	GGATTCGGCGTCCATCGA	59.584	61.111	11.28	0.00	42.86	3.59
473	474	0.808453	GGATTCGGCGTCCATCGAAA	60.808	55.000	11.28	0.00	46.25	3.46
477	478	0.099968	TCGGCGTCCATCGAAACTAG	59.900	55.000	6.85	0.00	42.86	2.57
480	481	0.645868	GCGTCCATCGAAACTAGTGC	59.354	55.000	0.00	0.00	42.86	4.40
493	494	1.070134	ACTAGTGCTTGCCGACTGAAA	59.930	47.619	0.00	0.00	0.00	2.69
526	527	1.398692	GAGGTGGTTGTTCAAAGCCA	58.601	50.000	0.00	0.00	0.00	4.75
527	528	1.338020	GAGGTGGTTGTTCAAAGCCAG	59.662	52.381	0.00	0.00	0.00	4.85
564	566	0.391263	CTCCAACGCCAACTACTCCC	60.391	60.000	0.00	0.00	0.00	4.30
603	605	1.873591	ACGTTTTGGACAGCTGACATC	59.126	47.619	23.35	7.58	0.00	3.06
621	623	2.140065	TCGAACTGTCTTGTGCTCTG	57.860	50.000	0.00	0.00	0.00	3.35
691	693	2.364647	TGTTGTGAGCATGCATTTGGAA	59.635	40.909	21.98	1.58	0.00	3.53
692	694	3.007074	TGTTGTGAGCATGCATTTGGAAT	59.993	39.130	21.98	0.00	0.00	3.01
693	695	3.239587	TGTGAGCATGCATTTGGAATG	57.760	42.857	21.98	0.00	0.00	2.67
930	1032	4.246458	CTCTCAACCTAGTACCAAGTTGC	58.754	47.826	12.35	0.00	39.51	4.17
945	1047	1.152830	TTGCACCTTGAACTCCCCC	59.847	57.895	0.00	0.00	0.00	5.40
948	1050	2.852075	ACCTTGAACTCCCCCGCA	60.852	61.111	0.00	0.00	0.00	5.69
1068	1187	1.674057	CCAGGGCGAGAAGAACACT	59.326	57.895	0.00	0.00	0.00	3.55
1171	1322	2.094130	TGTTGTTCCACGAGTACACACA	60.094	45.455	0.00	0.00	0.00	3.72
1176	1327	1.005394	CACGAGTACACACACCCCC	60.005	63.158	0.00	0.00	0.00	5.40
1197	1348	3.681897	CCTGTGCTTCTTCTATGTGTGTC	59.318	47.826	0.00	0.00	0.00	3.67
1415	1622	3.542676	ACCAACGGTGAGGCGTCA	61.543	61.111	0.00	4.68	32.98	4.35
1416	1623	2.047274	CCAACGGTGAGGCGTCAT	60.047	61.111	12.93	0.00	34.36	3.06
1419	1626	1.067974	CCAACGGTGAGGCGTCATATA	59.932	52.381	12.93	0.00	34.36	0.86
1421	1628	1.688772	ACGGTGAGGCGTCATATACT	58.311	50.000	12.93	0.00	34.36	2.12
1424	1631	2.662700	GGTGAGGCGTCATATACTTCG	58.337	52.381	12.93	0.00	34.36	3.79
1425	1632	2.034305	GGTGAGGCGTCATATACTTCGT	59.966	50.000	12.93	0.00	34.36	3.85
1426	1633	3.298317	GTGAGGCGTCATATACTTCGTC	58.702	50.000	12.93	0.00	34.36	4.20
1427	1634	2.032290	TGAGGCGTCATATACTTCGTCG	60.032	50.000	4.68	0.00	33.09	5.12
1428	1635	1.945394	AGGCGTCATATACTTCGTCGT	59.055	47.619	0.00	0.00	33.09	4.34
1431	1650	2.396508	GCGTCATATACTTCGTCGTTCG	59.603	50.000	0.00	0.00	41.41	3.95
1467	1713	2.647683	TGCCACATAAGACACCAACA	57.352	45.000	0.00	0.00	0.00	3.33
1629	1879	3.246112	CCTCACGGTGTTCCCCCA	61.246	66.667	8.17	0.00	0.00	4.96
1705	1955	2.852075	AAGTTCCGGCACTGGGGA	60.852	61.111	7.75	0.00	0.00	4.81
2034	4738	3.793144	GAGCGCGGCAACTTCCAG	61.793	66.667	8.83	0.00	0.00	3.86
2419	5193	2.317530	ATAGGCTTTCGCTCCACTTC	57.682	50.000	0.00	0.00	36.09	3.01
2439	5213	7.378181	CACTTCCTAAATAAAGCAACCAACAT	58.622	34.615	0.00	0.00	0.00	2.71
2469	5243	2.894257	AAGTCCATGAGCCGCACCA	61.894	57.895	0.00	0.00	0.00	4.17
2495	5269	9.740710	AAAAGTAAAATAGTCTACTGGAGCAAT	57.259	29.630	0.00	0.00	0.00	3.56
2587	5363	0.392706	ATCTGCGGTGACACAAGACA	59.607	50.000	8.08	0.00	0.00	3.41
2595	5371	0.174617	TGACACAAGACAGCACACGA	59.825	50.000	0.00	0.00	0.00	4.35
2773	5549	4.452733	GGTCCAAGCTAGCGCCGT	62.453	66.667	9.55	0.00	36.60	5.68
2856	5632	2.279073	CCAGGTCCGAGGCCTCTA	59.721	66.667	29.73	15.51	33.31	2.43
2891	5667	1.532868	CCTCACTTTCAAAGCTCCACG	59.467	52.381	0.00	0.00	0.00	4.94
2892	5668	2.213499	CTCACTTTCAAAGCTCCACGT	58.787	47.619	0.00	0.00	0.00	4.49
2919	5695	0.517316	GCCGTCGTGCAAGAGAAAAT	59.483	50.000	1.39	0.00	0.00	1.82
2996	5773	1.009829	GTGCTGCTTGAATACCTCCG	58.990	55.000	0.00	0.00	0.00	4.63
3024	5801	4.301505	GAGGCGATCCTGCAACAA	57.698	55.556	0.00	0.00	44.46	2.83
3093	5870	3.454082	AGCCAAAATGTCTAGGAGAGAGG	59.546	47.826	0.00	0.00	33.72	3.69

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
44	45	2.006772	CAGCAAACCGTATCCTCGC	58.993	57.895	0.00	0.00	0.00	5.03
95	96	3.549794	AGCTTCATGGAGCAATAAGTCC	58.450	45.455	27.76	0.00	45.12	3.85
100	101	5.294306	CGAGTTTTAGCTTCATGGAGCAATA	59.706	40.000	27.76	9.77	45.12	1.90
101	102	4.095483	CGAGTTTTAGCTTCATGGAGCAAT	59.905	41.667	27.76	10.85	45.12	3.56
124	125	2.267324	GACTCTCAGGCCCAGCAC	59.733	66.667	0.00	0.00	0.00	4.40
164	165	7.025963	GCAAGGAAACTGAAAATGATAGACAG	58.974	38.462	0.00	0.00	42.68	3.51
181	182	2.618816	CCACTAGCCATCTGCAAGGAAA	60.619	50.000	3.83	0.00	44.83	3.13
203	204	1.993956	TTTGCTTCCTTTGCAGCCTA	58.006	45.000	0.00	0.00	41.71	3.93
230	231	5.923733	TTCCAAGCTTTGTTTGGTTTCTA	57.076	34.783	11.76	0.00	42.99	2.10
271	272	1.379527	GTAACCTACCACAGCCATGC	58.620	55.000	0.00	0.00	0.00	4.06
280	281	2.313317	CTCCATAGCCGTAACCTACCA	58.687	52.381	0.00	0.00	0.00	3.25
281	282	2.035576	CACTCCATAGCCGTAACCTACC	59.964	54.545	0.00	0.00	0.00	3.18
286	287	4.644103	TTCTACACTCCATAGCCGTAAC	57.356	45.455	0.00	0.00	0.00	2.50
291	292	6.116126	ACTTTGATTTCTACACTCCATAGCC	58.884	40.000	0.00	0.00	0.00	3.93
354	355	5.520288	GAATATATATTCATGCCGTCGCACT	59.480	40.000	24.50	0.00	39.96	4.40
453	454	2.947118	TTCGATGGACGCCGAATCCG	62.947	60.000	0.00	0.00	39.49	4.18
459	460	0.179145	ACTAGTTTCGATGGACGCCG	60.179	55.000	0.00	0.00	42.26	6.46
471	472	1.070134	TCAGTCGGCAAGCACTAGTTT	59.930	47.619	0.00	0.00	0.00	2.66
473	474	0.679505	TTCAGTCGGCAAGCACTAGT	59.320	50.000	0.00	0.00	0.00	2.57
477	478	2.076863	ACTATTTCAGTCGGCAAGCAC	58.923	47.619	0.00	0.00	28.33	4.40
480	481	5.049405	AGTCAAAACTATTTCAGTCGGCAAG	60.049	40.000	0.00	0.00	36.04	4.01
493	494	4.724279	ACCACCTCCAAGTCAAAACTAT	57.276	40.909	0.00	0.00	33.48	2.12
526	527	5.245531	TGGAGTATTTCATTTCGCAAGTCT	58.754	37.500	0.00	0.00	39.48	3.24
527	528	5.545658	TGGAGTATTTCATTTCGCAAGTC	57.454	39.130	0.00	0.00	39.48	3.01
603	605	1.789464	GACAGAGCACAAGACAGTTCG	59.211	52.381	0.00	0.00	0.00	3.95
646	648	4.284746	CCAACTACTCCCTCTGTTCTCTTT	59.715	45.833	0.00	0.00	0.00	2.52
651	653	2.633481	ACACCAACTACTCCCTCTGTTC	59.367	50.000	0.00	0.00	0.00	3.18
776	842	5.812642	CCAGATGTGTCCAAGATGTTAGTAC	59.187	44.000	0.00	0.00	0.00	2.73
860	929	1.026718	AGGAAAAATCTGAGCGGCGG	61.027	55.000	9.78	0.00	0.00	6.13
930	1032	2.359975	GCGGGGGAGTTCAAGGTG	60.360	66.667	0.00	0.00	0.00	4.00
1051	1170	0.034059	ACAGTGTTCTTCTCGCCCTG	59.966	55.000	0.00	0.00	0.00	4.45
1068	1187	1.679311	GACTCCATGCCTCCACACA	59.321	57.895	0.00	0.00	0.00	3.72
1171	1322	1.561542	CATAGAAGAAGCACAGGGGGT	59.438	52.381	0.00	0.00	0.00	4.95
1176	1327	3.366121	CGACACACATAGAAGAAGCACAG	59.634	47.826	0.00	0.00	0.00	3.66
1197	1348	8.624028	GTTTGAAAATAAGTACATTTCGTTCCG	58.376	33.333	0.00	0.00	36.17	4.30
1226	1414	3.715618	TCATGTACGCGTGAACAAATC	57.284	42.857	24.59	2.60	37.67	2.17
1232	1426	3.892527	CGTTAATCATGTACGCGTGAA	57.107	42.857	24.59	10.43	43.10	3.18
1261	1467	3.443045	CCCATTCCTGTGGCGCAC	61.443	66.667	10.83	6.37	37.96	5.34
1307	1514	0.606401	CCCATGTCTTGAGCAACCGT	60.606	55.000	0.00	0.00	0.00	4.83
1421	1628	1.154169	CGATGGACCGAACGACGAA	60.154	57.895	0.00	0.00	45.77	3.85
1424	1631	0.381089	AGATCGATGGACCGAACGAC	59.619	55.000	0.54	5.10	42.22	4.34
1425	1632	1.100510	AAGATCGATGGACCGAACGA	58.899	50.000	0.54	9.24	42.22	3.85
1426	1633	1.852895	GAAAGATCGATGGACCGAACG	59.147	52.381	0.54	0.00	42.22	3.95
1427	1634	3.166489	AGAAAGATCGATGGACCGAAC	57.834	47.619	0.54	0.00	42.22	3.95
1428	1635	3.521560	CAAGAAAGATCGATGGACCGAA	58.478	45.455	0.54	0.00	42.22	4.30
1431	1650	1.943340	GGCAAGAAAGATCGATGGACC	59.057	52.381	0.54	0.00	0.00	4.46
1675	1925	0.696501	GGAACTTGAAGGCCACCCTA	59.303	55.000	5.01	0.00	41.90	3.53
1705	1955	0.986019	TGAACGGCCCCTCCATGTAT	60.986	55.000	0.00	0.00	34.01	2.29
2261	4991	0.255890	ACACCTGCACACCTGAAGTT	59.744	50.000	0.00	0.00	0.00	2.66
2419	5193	7.961325	AAACATGTTGGTTGCTTTATTTAGG	57.039	32.000	12.82	0.00	0.00	2.69
2469	5243	9.740710	ATTGCTCCAGTAGACTATTTTACTTTT	57.259	29.630	0.00	0.00	0.00	2.27
2587	5363	0.668706	GATGACTGCTGTCGTGTGCT	60.669	55.000	21.58	1.59	45.70	4.40
2595	5371	2.125912	GGACGCGATGACTGCTGT	60.126	61.111	15.93	0.00	0.00	4.40
2773	5549	1.815408	GCCTCTTCCAGCTTGTGTTCA	60.815	52.381	0.00	0.00	0.00	3.18
2891	5667	2.789203	GCACGACGGCGAGATTCAC	61.789	63.158	22.49	0.00	41.64	3.18
2892	5668	2.506217	GCACGACGGCGAGATTCA	60.506	61.111	22.49	0.00	41.64	2.57
2919	5695	2.100197	CGGAGAGAGGGACACACATTA	58.900	52.381	0.00	0.00	0.00	1.90
2981	5758	0.539986	GGGACGGAGGTATTCAAGCA	59.460	55.000	0.00	0.00	0.00	3.91
3024	5801	9.558396	TGAAGATTAAGATTTTTGTTTGGCAAT	57.442	25.926	0.00	0.00	36.89	3.56

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.