Multiple sequence alignment - TraesCS6B01G008900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G008900 chr6B 100.000 3540 0 0 1 3540 5731051 5734590 0.000000e+00 6538.0
1 TraesCS6B01G008900 chr6D 98.231 3336 58 1 1 3335 1414806 1411471 0.000000e+00 5832.0
2 TraesCS6B01G008900 chr7D 81.525 1115 186 15 874 1975 485027639 485028746 0.000000e+00 900.0
3 TraesCS6B01G008900 chr7A 81.329 1114 190 13 874 1975 553367050 553368157 0.000000e+00 889.0
4 TraesCS6B01G008900 chr7B 82.115 1012 163 16 1001 2000 663118048 663117043 0.000000e+00 850.0
5 TraesCS6B01G008900 chr7B 76.627 415 90 7 2204 2616 663116679 663116270 4.600000e-54 222.0
6 TraesCS6B01G008900 chr7B 84.722 72 9 2 2890 2961 744288424 744288355 1.760000e-08 71.3
7 TraesCS6B01G008900 chr7B 100.000 29 0 0 2918 2946 25342983 25343011 2.000000e-03 54.7
8 TraesCS6B01G008900 chr3B 82.468 308 49 5 3237 3540 787779371 787779677 7.540000e-67 265.0
9 TraesCS6B01G008900 chr1D 81.579 304 56 0 3237 3540 366478813 366479116 5.870000e-63 252.0
10 TraesCS6B01G008900 chr5D 81.433 307 53 4 3237 3540 374259658 374259963 7.590000e-62 248.0
11 TraesCS6B01G008900 chr5D 85.246 61 6 3 2889 2949 5273888 5273831 3.820000e-05 60.2
12 TraesCS6B01G008900 chr2B 81.553 309 50 6 3235 3540 651641515 651641819 7.590000e-62 248.0
13 TraesCS6B01G008900 chr2B 88.679 53 5 1 2909 2961 782178741 782178690 2.950000e-06 63.9
14 TraesCS6B01G008900 chr5A 81.311 305 55 2 3237 3540 158661634 158661331 2.730000e-61 246.0
15 TraesCS6B01G008900 chr5A 85.938 64 6 3 2891 2952 3516270 3516332 8.200000e-07 65.8
16 TraesCS6B01G008900 chr5A 93.023 43 2 1 2909 2951 3614970 3614929 1.060000e-05 62.1
17 TraesCS6B01G008900 chr4D 81.107 307 57 1 3235 3540 66509664 66509358 9.820000e-61 244.0
18 TraesCS6B01G008900 chr4D 81.046 306 56 2 3237 3540 69795408 69795103 3.530000e-60 243.0
19 TraesCS6B01G008900 chr2D 81.046 306 54 4 3237 3540 200258002 200258305 1.270000e-59 241.0
20 TraesCS6B01G008900 chr2D 81.046 306 52 5 3237 3540 602687139 602686838 4.570000e-59 239.0
21 TraesCS6B01G008900 chr3D 87.302 63 5 3 2890 2952 388518946 388519005 6.340000e-08 69.4
22 TraesCS6B01G008900 chr3A 84.127 63 7 3 2890 2952 509567119 509567178 1.370000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G008900 chr6B 5731051 5734590 3539 False 6538 6538 100.000 1 3540 1 chr6B.!!$F1 3539
1 TraesCS6B01G008900 chr6D 1411471 1414806 3335 True 5832 5832 98.231 1 3335 1 chr6D.!!$R1 3334
2 TraesCS6B01G008900 chr7D 485027639 485028746 1107 False 900 900 81.525 874 1975 1 chr7D.!!$F1 1101
3 TraesCS6B01G008900 chr7A 553367050 553368157 1107 False 889 889 81.329 874 1975 1 chr7A.!!$F1 1101
4 TraesCS6B01G008900 chr7B 663116270 663118048 1778 True 536 850 79.371 1001 2616 2 chr7B.!!$R2 1615

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
669 670 0.524862 CTTGGAGGCAATGCACTCAC 59.475 55.0 19.84 12.43 35.45 3.51 F
2354 2617 1.013596 TGGCCTTCGCAAATATGTCG 58.986 50.0 3.32 0.00 36.38 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2426 2689 1.271102 GTCGGACTCTGAAGTGCTTCT 59.729 52.381 12.44 0.0 41.38 2.85 R
3476 3739 0.029834 GTGGCAATGGTCGATGCATC 59.970 55.000 17.10 17.1 44.32 3.91 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 6.148480 CCTCTTTCACTACTCAACATTTCCAG 59.852 42.308 0.00 0.00 0.00 3.86
355 356 9.377312 ACAAATTGCAGTAGTTTGTTGTTATTT 57.623 25.926 6.34 0.00 43.95 1.40
454 455 6.982141 TCGTCACCAATATGAACTACATAACC 59.018 38.462 0.00 0.00 43.47 2.85
669 670 0.524862 CTTGGAGGCAATGCACTCAC 59.475 55.000 19.84 12.43 35.45 3.51
676 677 1.915614 GCAATGCACTCACTGGACCG 61.916 60.000 0.00 0.00 0.00 4.79
912 914 1.911454 TCCCATCCTCCATTGGTGAT 58.089 50.000 6.33 5.64 0.00 3.06
999 1001 2.716017 CCGGCTGACAGGTCTCCTC 61.716 68.421 4.26 0.00 0.00 3.71
1165 1173 2.242043 CCTCAGTTGTGGGAAATGCTT 58.758 47.619 0.00 0.00 0.00 3.91
1302 1310 6.824305 ATGGCATTAGTATTTGCAGTATCC 57.176 37.500 0.00 0.00 40.66 2.59
1409 1417 5.237127 CAGAACTAGTCAGTGCAACAAATGA 59.763 40.000 0.00 0.00 41.43 2.57
1437 1445 1.066587 CGAGAACCTCATCGGAGCC 59.933 63.158 0.00 0.00 39.96 4.70
1493 1501 2.615912 GGATCAATGACCAGCAAGTAGC 59.384 50.000 0.00 0.00 46.19 3.58
1740 1748 5.014228 TGAAGATATGGGACTAGATCTCCGA 59.986 44.000 0.00 0.00 0.00 4.55
1800 1808 6.253727 CACTCGAGTATCTTCACCAACATAAC 59.746 42.308 19.57 0.00 0.00 1.89
2149 2157 6.236017 TCTAGCATGGTTTTTACTCAAACG 57.764 37.500 1.12 0.00 37.50 3.60
2169 2177 5.890110 ACGAAAATGACTAGATATGTGCG 57.110 39.130 0.00 0.00 0.00 5.34
2172 2180 6.637254 ACGAAAATGACTAGATATGTGCGTAG 59.363 38.462 0.00 0.00 0.00 3.51
2254 2517 3.623203 GCAATGAAGTCTCAATCCAGGGA 60.623 47.826 0.00 0.00 34.49 4.20
2347 2610 2.656055 GCCATTGGCCTTCGCAAA 59.344 55.556 17.28 0.00 44.06 3.68
2354 2617 1.013596 TGGCCTTCGCAAATATGTCG 58.986 50.000 3.32 0.00 36.38 4.35
2426 2689 8.367660 ACTACCAGAGATAGAAGATTGTGAAA 57.632 34.615 0.00 0.00 0.00 2.69
2537 2800 1.027357 GATGCCAATGGATCGCTTGT 58.973 50.000 2.05 0.00 0.00 3.16
2580 2843 9.283420 GAAAGAGCTGCATTAAATTAGAGAAAC 57.717 33.333 1.02 0.00 0.00 2.78
2746 3009 6.404074 GGCTGAAATATATGCCTGAACTATGC 60.404 42.308 4.86 0.00 41.92 3.14
2878 3141 9.890915 AGGATCTAAGACCTAGATAAGAATTGT 57.109 33.333 0.00 0.00 45.73 2.71
2892 3155 9.003658 AGATAAGAATTGTGTGGTGTCTTTTAG 57.996 33.333 0.00 0.00 31.28 1.85
3135 3398 2.289002 GCTTTGCGCAATCTATAGCTGT 59.711 45.455 27.94 0.00 38.92 4.40
3143 3406 4.559502 CGCAATCTATAGCTGTGCCTTCTA 60.560 45.833 13.30 0.00 31.41 2.10
3155 3418 2.488153 GTGCCTTCTAATCACCCACAAC 59.512 50.000 0.00 0.00 0.00 3.32
3229 3492 2.462723 TGGTACCAGATTCATCGACCA 58.537 47.619 11.60 0.00 32.06 4.02
3235 3498 2.354103 CCAGATTCATCGACCACACTGT 60.354 50.000 0.00 0.00 0.00 3.55
3253 3516 1.202348 TGTGCACCACTATCTCGACAG 59.798 52.381 15.69 0.00 35.11 3.51
3277 3540 2.419673 CTGCGCCAAGATTAACATGACA 59.580 45.455 4.18 0.00 0.00 3.58
3336 3599 3.504927 GGCCACCCCGAATTAACG 58.495 61.111 0.00 0.00 0.00 3.18
3337 3600 1.377594 GGCCACCCCGAATTAACGT 60.378 57.895 0.00 0.00 0.00 3.99
3338 3601 0.961857 GGCCACCCCGAATTAACGTT 60.962 55.000 5.88 5.88 0.00 3.99
3339 3602 0.169451 GCCACCCCGAATTAACGTTG 59.831 55.000 11.99 0.00 0.00 4.10
3340 3603 1.810959 CCACCCCGAATTAACGTTGA 58.189 50.000 11.99 2.22 0.00 3.18
3341 3604 1.465777 CCACCCCGAATTAACGTTGAC 59.534 52.381 11.99 0.00 0.00 3.18
3342 3605 2.419667 CACCCCGAATTAACGTTGACT 58.580 47.619 11.99 0.00 0.00 3.41
3343 3606 3.587923 CACCCCGAATTAACGTTGACTA 58.412 45.455 11.99 0.00 0.00 2.59
3344 3607 3.368843 CACCCCGAATTAACGTTGACTAC 59.631 47.826 11.99 0.00 0.00 2.73
3356 3619 3.724295 GTTGACTACGACATCCTTTGC 57.276 47.619 0.00 0.00 0.00 3.68
3357 3620 3.064207 GTTGACTACGACATCCTTTGCA 58.936 45.455 0.00 0.00 0.00 4.08
3358 3621 2.683968 TGACTACGACATCCTTTGCAC 58.316 47.619 0.00 0.00 0.00 4.57
3359 3622 1.654105 GACTACGACATCCTTTGCACG 59.346 52.381 0.00 0.00 35.52 5.34
3360 3623 0.999406 CTACGACATCCTTTGCACGG 59.001 55.000 0.00 0.00 34.32 4.94
3361 3624 1.017177 TACGACATCCTTTGCACGGC 61.017 55.000 0.00 0.00 34.32 5.68
3362 3625 2.034879 CGACATCCTTTGCACGGCT 61.035 57.895 0.00 0.00 0.00 5.52
3363 3626 0.739462 CGACATCCTTTGCACGGCTA 60.739 55.000 0.00 0.00 0.00 3.93
3364 3627 0.727398 GACATCCTTTGCACGGCTAC 59.273 55.000 0.00 0.00 0.00 3.58
3365 3628 0.676782 ACATCCTTTGCACGGCTACC 60.677 55.000 0.00 0.00 0.00 3.18
3366 3629 0.392998 CATCCTTTGCACGGCTACCT 60.393 55.000 0.00 0.00 0.00 3.08
3367 3630 0.107654 ATCCTTTGCACGGCTACCTC 60.108 55.000 0.00 0.00 0.00 3.85
3368 3631 2.100631 CCTTTGCACGGCTACCTCG 61.101 63.158 0.00 0.00 0.00 4.63
3369 3632 1.080093 CTTTGCACGGCTACCTCGA 60.080 57.895 0.00 0.00 0.00 4.04
3370 3633 1.352156 CTTTGCACGGCTACCTCGAC 61.352 60.000 0.00 0.00 0.00 4.20
3371 3634 2.775032 TTTGCACGGCTACCTCGACC 62.775 60.000 0.00 0.00 0.00 4.79
3372 3635 3.755628 GCACGGCTACCTCGACCA 61.756 66.667 0.00 0.00 0.00 4.02
3373 3636 2.181021 CACGGCTACCTCGACCAC 59.819 66.667 0.00 0.00 0.00 4.16
3374 3637 3.437795 ACGGCTACCTCGACCACG 61.438 66.667 0.00 0.00 41.26 4.94
3375 3638 4.189188 CGGCTACCTCGACCACGG 62.189 72.222 0.00 0.00 40.21 4.94
3376 3639 4.509737 GGCTACCTCGACCACGGC 62.510 72.222 0.00 0.00 40.21 5.68
3377 3640 3.450115 GCTACCTCGACCACGGCT 61.450 66.667 0.00 0.00 40.21 5.52
3378 3641 2.117156 GCTACCTCGACCACGGCTA 61.117 63.158 0.00 0.00 40.21 3.93
3379 3642 1.726265 CTACCTCGACCACGGCTAC 59.274 63.158 0.00 0.00 40.21 3.58
3380 3643 1.002257 TACCTCGACCACGGCTACA 60.002 57.895 0.00 0.00 40.21 2.74
3381 3644 1.308069 TACCTCGACCACGGCTACAC 61.308 60.000 0.00 0.00 40.21 2.90
3382 3645 2.181021 CTCGACCACGGCTACACC 59.819 66.667 0.00 0.00 40.21 4.16
3383 3646 2.598099 TCGACCACGGCTACACCA 60.598 61.111 0.00 0.00 39.03 4.17
3384 3647 2.431942 CGACCACGGCTACACCAC 60.432 66.667 0.00 0.00 39.03 4.16
3385 3648 2.047560 GACCACGGCTACACCACC 60.048 66.667 0.00 0.00 39.03 4.61
3386 3649 3.600898 GACCACGGCTACACCACCC 62.601 68.421 0.00 0.00 39.03 4.61
3387 3650 3.319198 CCACGGCTACACCACCCT 61.319 66.667 0.00 0.00 39.03 4.34
3388 3651 1.985662 CCACGGCTACACCACCCTA 60.986 63.158 0.00 0.00 39.03 3.53
3389 3652 1.217244 CACGGCTACACCACCCTAC 59.783 63.158 0.00 0.00 39.03 3.18
3390 3653 2.345760 ACGGCTACACCACCCTACG 61.346 63.158 0.00 0.00 39.03 3.51
3391 3654 2.186125 GGCTACACCACCCTACGC 59.814 66.667 0.00 0.00 38.86 4.42
3392 3655 2.356780 GGCTACACCACCCTACGCT 61.357 63.158 0.00 0.00 38.86 5.07
3393 3656 1.141234 GCTACACCACCCTACGCTC 59.859 63.158 0.00 0.00 0.00 5.03
3394 3657 1.321074 GCTACACCACCCTACGCTCT 61.321 60.000 0.00 0.00 0.00 4.09
3395 3658 0.739561 CTACACCACCCTACGCTCTC 59.260 60.000 0.00 0.00 0.00 3.20
3396 3659 1.028330 TACACCACCCTACGCTCTCG 61.028 60.000 0.00 0.00 42.43 4.04
3397 3660 2.754658 ACCACCCTACGCTCTCGG 60.755 66.667 0.00 0.00 40.69 4.63
3398 3661 4.208686 CCACCCTACGCTCTCGGC 62.209 72.222 0.00 0.00 40.69 5.54
3399 3662 3.141488 CACCCTACGCTCTCGGCT 61.141 66.667 0.00 0.00 40.69 5.52
3400 3663 1.822613 CACCCTACGCTCTCGGCTA 60.823 63.158 0.00 0.00 40.69 3.93
3401 3664 1.823041 ACCCTACGCTCTCGGCTAC 60.823 63.158 0.00 0.00 40.69 3.58
3402 3665 2.553727 CCCTACGCTCTCGGCTACC 61.554 68.421 0.00 0.00 40.69 3.18
3403 3666 2.553727 CCTACGCTCTCGGCTACCC 61.554 68.421 0.00 0.00 40.69 3.69
3404 3667 2.517875 TACGCTCTCGGCTACCCC 60.518 66.667 0.00 0.00 40.69 4.95
3405 3668 3.348554 TACGCTCTCGGCTACCCCA 62.349 63.158 0.00 0.00 40.69 4.96
3406 3669 2.842188 TACGCTCTCGGCTACCCCAA 62.842 60.000 0.00 0.00 40.69 4.12
3407 3670 2.797278 CGCTCTCGGCTACCCCAAT 61.797 63.158 0.00 0.00 39.13 3.16
3408 3671 1.461091 CGCTCTCGGCTACCCCAATA 61.461 60.000 0.00 0.00 39.13 1.90
3409 3672 0.756903 GCTCTCGGCTACCCCAATAA 59.243 55.000 0.00 0.00 38.06 1.40
3410 3673 1.348036 GCTCTCGGCTACCCCAATAAT 59.652 52.381 0.00 0.00 38.06 1.28
3411 3674 2.872038 GCTCTCGGCTACCCCAATAATG 60.872 54.545 0.00 0.00 38.06 1.90
3412 3675 5.985724 GCTCTCGGCTACCCCAATAATGG 62.986 56.522 0.00 0.00 41.30 3.16
3413 3676 0.109723 TCGGCTACCCCAATAATGGC 59.890 55.000 0.00 0.00 46.09 4.40
3414 3677 0.179004 CGGCTACCCCAATAATGGCA 60.179 55.000 0.00 0.00 46.09 4.92
3415 3678 1.328279 GGCTACCCCAATAATGGCAC 58.672 55.000 0.00 0.00 46.09 5.01
3416 3679 1.410932 GGCTACCCCAATAATGGCACA 60.411 52.381 0.00 0.00 46.09 4.57
3429 3692 1.610363 TGGCACAAAAGGTTATCGCA 58.390 45.000 0.00 0.00 31.92 5.10
3430 3693 2.166829 TGGCACAAAAGGTTATCGCAT 58.833 42.857 0.00 0.00 31.92 4.73
3431 3694 2.560542 TGGCACAAAAGGTTATCGCATT 59.439 40.909 0.00 0.00 31.92 3.56
3432 3695 3.006323 TGGCACAAAAGGTTATCGCATTT 59.994 39.130 0.00 0.00 31.92 2.32
3433 3696 3.612423 GGCACAAAAGGTTATCGCATTTC 59.388 43.478 0.00 0.00 0.00 2.17
3434 3697 4.485163 GCACAAAAGGTTATCGCATTTCT 58.515 39.130 0.00 0.00 0.00 2.52
3435 3698 4.923281 GCACAAAAGGTTATCGCATTTCTT 59.077 37.500 0.00 0.00 0.00 2.52
3436 3699 5.164061 GCACAAAAGGTTATCGCATTTCTTG 60.164 40.000 0.00 0.00 0.00 3.02
3437 3700 6.148948 CACAAAAGGTTATCGCATTTCTTGA 58.851 36.000 0.00 0.00 0.00 3.02
3438 3701 6.306356 CACAAAAGGTTATCGCATTTCTTGAG 59.694 38.462 0.00 0.00 0.00 3.02
3439 3702 4.622701 AAGGTTATCGCATTTCTTGAGC 57.377 40.909 0.00 0.00 0.00 4.26
3440 3703 3.609853 AGGTTATCGCATTTCTTGAGCA 58.390 40.909 0.00 0.00 0.00 4.26
3441 3704 4.009675 AGGTTATCGCATTTCTTGAGCAA 58.990 39.130 0.00 0.00 0.00 3.91
3442 3705 4.098416 GGTTATCGCATTTCTTGAGCAAC 58.902 43.478 0.00 0.00 0.00 4.17
3443 3706 2.927553 ATCGCATTTCTTGAGCAACC 57.072 45.000 0.00 0.00 0.00 3.77
3444 3707 1.896220 TCGCATTTCTTGAGCAACCT 58.104 45.000 0.00 0.00 0.00 3.50
3445 3708 2.229792 TCGCATTTCTTGAGCAACCTT 58.770 42.857 0.00 0.00 0.00 3.50
3446 3709 2.030893 TCGCATTTCTTGAGCAACCTTG 60.031 45.455 0.00 0.00 0.00 3.61
3447 3710 2.287788 CGCATTTCTTGAGCAACCTTGT 60.288 45.455 0.00 0.00 0.00 3.16
3448 3711 3.058293 CGCATTTCTTGAGCAACCTTGTA 60.058 43.478 0.00 0.00 0.00 2.41
3449 3712 4.479619 GCATTTCTTGAGCAACCTTGTAG 58.520 43.478 0.00 0.00 0.00 2.74
3450 3713 4.216257 GCATTTCTTGAGCAACCTTGTAGA 59.784 41.667 0.00 0.00 0.00 2.59
3451 3714 5.105997 GCATTTCTTGAGCAACCTTGTAGAT 60.106 40.000 0.00 0.00 0.00 1.98
3452 3715 6.571150 GCATTTCTTGAGCAACCTTGTAGATT 60.571 38.462 0.00 0.00 0.00 2.40
3453 3716 6.959639 TTTCTTGAGCAACCTTGTAGATTT 57.040 33.333 0.00 0.00 0.00 2.17
3454 3717 6.560253 TTCTTGAGCAACCTTGTAGATTTC 57.440 37.500 0.00 0.00 0.00 2.17
3455 3718 5.003804 TCTTGAGCAACCTTGTAGATTTCC 58.996 41.667 0.00 0.00 0.00 3.13
3456 3719 4.365514 TGAGCAACCTTGTAGATTTCCA 57.634 40.909 0.00 0.00 0.00 3.53
3457 3720 4.072131 TGAGCAACCTTGTAGATTTCCAC 58.928 43.478 0.00 0.00 0.00 4.02
3458 3721 3.421844 AGCAACCTTGTAGATTTCCACC 58.578 45.455 0.00 0.00 0.00 4.61
3459 3722 2.492088 GCAACCTTGTAGATTTCCACCC 59.508 50.000 0.00 0.00 0.00 4.61
3460 3723 3.814316 GCAACCTTGTAGATTTCCACCCT 60.814 47.826 0.00 0.00 0.00 4.34
3461 3724 4.566907 GCAACCTTGTAGATTTCCACCCTA 60.567 45.833 0.00 0.00 0.00 3.53
3462 3725 5.186198 CAACCTTGTAGATTTCCACCCTAG 58.814 45.833 0.00 0.00 0.00 3.02
3463 3726 3.200165 ACCTTGTAGATTTCCACCCTAGC 59.800 47.826 0.00 0.00 0.00 3.42
3464 3727 3.433740 CCTTGTAGATTTCCACCCTAGCC 60.434 52.174 0.00 0.00 0.00 3.93
3465 3728 2.840511 TGTAGATTTCCACCCTAGCCA 58.159 47.619 0.00 0.00 0.00 4.75
3466 3729 2.504175 TGTAGATTTCCACCCTAGCCAC 59.496 50.000 0.00 0.00 0.00 5.01
3467 3730 0.541863 AGATTTCCACCCTAGCCACG 59.458 55.000 0.00 0.00 0.00 4.94
3468 3731 0.539986 GATTTCCACCCTAGCCACGA 59.460 55.000 0.00 0.00 0.00 4.35
3469 3732 0.252197 ATTTCCACCCTAGCCACGAC 59.748 55.000 0.00 0.00 0.00 4.34
3470 3733 0.834687 TTTCCACCCTAGCCACGACT 60.835 55.000 0.00 0.00 0.00 4.18
3471 3734 0.834687 TTCCACCCTAGCCACGACTT 60.835 55.000 0.00 0.00 0.00 3.01
3472 3735 0.834687 TCCACCCTAGCCACGACTTT 60.835 55.000 0.00 0.00 0.00 2.66
3473 3736 0.391263 CCACCCTAGCCACGACTTTC 60.391 60.000 0.00 0.00 0.00 2.62
3474 3737 0.736325 CACCCTAGCCACGACTTTCG 60.736 60.000 0.00 0.00 46.93 3.46
3475 3738 1.810030 CCCTAGCCACGACTTTCGC 60.810 63.158 0.00 0.00 45.12 4.70
3476 3739 2.158959 CCTAGCCACGACTTTCGCG 61.159 63.158 0.00 0.00 45.12 5.87
3477 3740 1.154093 CTAGCCACGACTTTCGCGA 60.154 57.895 3.71 3.71 45.12 5.87
3478 3741 0.525668 CTAGCCACGACTTTCGCGAT 60.526 55.000 10.88 0.00 45.12 4.58
3479 3742 0.800683 TAGCCACGACTTTCGCGATG 60.801 55.000 10.88 9.02 45.12 3.84
3480 3743 2.395690 CCACGACTTTCGCGATGC 59.604 61.111 10.88 0.00 45.12 3.91
3481 3744 2.379634 CCACGACTTTCGCGATGCA 61.380 57.895 10.88 0.00 45.12 3.96
3482 3745 1.695893 CCACGACTTTCGCGATGCAT 61.696 55.000 10.88 0.00 45.12 3.96
3483 3746 0.314578 CACGACTTTCGCGATGCATC 60.315 55.000 17.10 17.10 45.12 3.91
3494 3757 2.407268 GATGCATCGACCATTGCCA 58.593 52.632 11.68 0.00 38.08 4.92
3495 3758 0.029834 GATGCATCGACCATTGCCAC 59.970 55.000 11.68 0.00 38.08 5.01
3496 3759 0.394762 ATGCATCGACCATTGCCACT 60.395 50.000 6.29 0.00 38.08 4.00
3497 3760 0.251634 TGCATCGACCATTGCCACTA 59.748 50.000 6.29 0.00 38.08 2.74
3498 3761 1.134128 TGCATCGACCATTGCCACTAT 60.134 47.619 6.29 0.00 38.08 2.12
3499 3762 1.265095 GCATCGACCATTGCCACTATG 59.735 52.381 0.00 0.00 32.66 2.23
3500 3763 2.564771 CATCGACCATTGCCACTATGT 58.435 47.619 0.00 0.00 0.00 2.29
3501 3764 2.022764 TCGACCATTGCCACTATGTG 57.977 50.000 0.00 0.00 0.00 3.21
3517 3780 3.739922 TGGGATGTCCATCGGCTT 58.260 55.556 0.86 0.00 41.46 4.35
3518 3781 2.923619 TGGGATGTCCATCGGCTTA 58.076 52.632 0.86 0.00 41.46 3.09
3519 3782 0.468226 TGGGATGTCCATCGGCTTAC 59.532 55.000 0.86 0.00 41.46 2.34
3520 3783 0.250338 GGGATGTCCATCGGCTTACC 60.250 60.000 0.86 0.00 38.69 2.85
3521 3784 0.759346 GGATGTCCATCGGCTTACCT 59.241 55.000 1.43 0.00 38.69 3.08
3522 3785 1.141053 GGATGTCCATCGGCTTACCTT 59.859 52.381 1.43 0.00 38.69 3.50
3523 3786 2.484889 GATGTCCATCGGCTTACCTTC 58.515 52.381 0.00 0.00 0.00 3.46
3524 3787 0.174845 TGTCCATCGGCTTACCTTCG 59.825 55.000 0.00 0.00 0.00 3.79
3525 3788 0.529992 GTCCATCGGCTTACCTTCGG 60.530 60.000 0.00 0.00 0.00 4.30
3526 3789 0.685131 TCCATCGGCTTACCTTCGGA 60.685 55.000 0.00 0.00 0.00 4.55
3527 3790 0.393077 CCATCGGCTTACCTTCGGAT 59.607 55.000 0.00 0.00 0.00 4.18
3528 3791 1.202651 CCATCGGCTTACCTTCGGATT 60.203 52.381 0.00 0.00 0.00 3.01
3529 3792 2.135933 CATCGGCTTACCTTCGGATTC 58.864 52.381 0.00 0.00 0.00 2.52
3530 3793 1.481871 TCGGCTTACCTTCGGATTCT 58.518 50.000 0.00 0.00 0.00 2.40
3531 3794 1.829222 TCGGCTTACCTTCGGATTCTT 59.171 47.619 0.00 0.00 0.00 2.52
3532 3795 2.235402 TCGGCTTACCTTCGGATTCTTT 59.765 45.455 0.00 0.00 0.00 2.52
3533 3796 3.007635 CGGCTTACCTTCGGATTCTTTT 58.992 45.455 0.00 0.00 0.00 2.27
3534 3797 3.063588 CGGCTTACCTTCGGATTCTTTTC 59.936 47.826 0.00 0.00 0.00 2.29
3535 3798 3.377485 GGCTTACCTTCGGATTCTTTTCC 59.623 47.826 0.00 0.00 0.00 3.13
3536 3799 4.007659 GCTTACCTTCGGATTCTTTTCCA 58.992 43.478 0.00 0.00 35.34 3.53
3537 3800 4.095036 GCTTACCTTCGGATTCTTTTCCAG 59.905 45.833 0.00 0.00 35.34 3.86
3538 3801 3.790089 ACCTTCGGATTCTTTTCCAGT 57.210 42.857 0.00 0.00 35.34 4.00
3539 3802 3.676093 ACCTTCGGATTCTTTTCCAGTC 58.324 45.455 0.00 0.00 35.34 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 1.727335 GCAAGTCTAGAACCGCAAGAC 59.273 52.381 0.00 0.00 39.95 3.01
321 322 4.848357 ACTACTGCAATTTGTCAGGCTAT 58.152 39.130 18.54 6.44 34.76 2.97
355 356 1.421268 AGCTTGTTGTCTCCCACATCA 59.579 47.619 0.00 0.00 33.90 3.07
454 455 7.224297 TCCCTATTCCTTCAGATATTTTTCCG 58.776 38.462 0.00 0.00 0.00 4.30
464 465 8.925338 GTTAACTAGATTCCCTATTCCTTCAGA 58.075 37.037 0.00 0.00 0.00 3.27
517 518 2.295909 CGGAATTGTGCCCTCAAAAAGA 59.704 45.455 0.00 0.00 0.00 2.52
610 611 6.399986 GCATTTGAAGATTGCCGAAACTTAAC 60.400 38.462 0.00 0.00 0.00 2.01
669 670 1.344763 GATTGGGAGGTATCGGTCCAG 59.655 57.143 0.00 0.00 34.14 3.86
676 677 6.064717 ACAATTGCTTAGATTGGGAGGTATC 58.935 40.000 5.05 0.00 38.50 2.24
1165 1173 1.700739 AGGGATTCCGTTACACAACCA 59.299 47.619 0.00 0.00 38.33 3.67
1302 1310 6.677781 TTTCTTCTCCTATGGTAAAATGCG 57.322 37.500 0.00 0.00 0.00 4.73
1409 1417 3.140325 TGAGGTTCTCGGAAGCAAAAT 57.860 42.857 15.11 0.00 32.35 1.82
1493 1501 3.730761 GCACCTTCACAGCGGCAG 61.731 66.667 1.45 0.00 0.00 4.85
2144 2152 6.624917 CGCACATATCTAGTCATTTTCGTTTG 59.375 38.462 0.00 0.00 0.00 2.93
2149 2157 7.932120 ACTACGCACATATCTAGTCATTTTC 57.068 36.000 0.00 0.00 0.00 2.29
2254 2517 4.590647 AGTATGCCATAGCTGTACACATCT 59.409 41.667 0.00 0.00 40.80 2.90
2347 2610 4.279169 CCTTCCAATGCCATTTCGACATAT 59.721 41.667 0.00 0.00 0.00 1.78
2354 2617 1.826720 TCTGCCTTCCAATGCCATTTC 59.173 47.619 0.00 0.00 0.00 2.17
2426 2689 1.271102 GTCGGACTCTGAAGTGCTTCT 59.729 52.381 12.44 0.00 41.38 2.85
2572 2835 6.017109 GCAACTCCTTGTGAAATGTTTCTCTA 60.017 38.462 6.99 0.60 38.02 2.43
2580 2843 2.095567 CCGAGCAACTCCTTGTGAAATG 60.096 50.000 0.00 0.00 0.00 2.32
2704 2967 3.435327 TCAGCCACAAACTTAGCATAACG 59.565 43.478 0.00 0.00 0.00 3.18
2706 2969 6.588719 ATTTCAGCCACAAACTTAGCATAA 57.411 33.333 0.00 0.00 0.00 1.90
2746 3009 1.392510 CATGACATGTGCACTCACTCG 59.607 52.381 19.41 2.68 43.49 4.18
2878 3141 8.458573 AACATCAATAACTAAAAGACACCACA 57.541 30.769 0.00 0.00 0.00 4.17
2892 3155 7.542130 CACTTTCCAAAGCCTAACATCAATAAC 59.458 37.037 0.00 0.00 39.63 1.89
3018 3281 9.723601 AAATTGCTGCTTTCTTTATGGATAAAA 57.276 25.926 0.00 0.00 32.39 1.52
3090 3353 6.549736 GCTTAAACTAGAGAGAGGGAAGAGAT 59.450 42.308 0.00 0.00 0.00 2.75
3135 3398 2.375174 AGTTGTGGGTGATTAGAAGGCA 59.625 45.455 0.00 0.00 0.00 4.75
3143 3406 5.664908 AGAGAGATCATAGTTGTGGGTGATT 59.335 40.000 0.00 0.00 31.86 2.57
3155 3418 4.458642 TGGATTCGAGCAGAGAGATCATAG 59.541 45.833 0.00 0.00 31.47 2.23
3229 3492 1.067565 CGAGATAGTGGTGCACAGTGT 60.068 52.381 20.43 6.15 36.74 3.55
3235 3498 0.173481 GCTGTCGAGATAGTGGTGCA 59.827 55.000 0.00 0.00 0.00 4.57
3253 3516 0.521291 TGTTAATCTTGGCGCAGTGC 59.479 50.000 10.83 4.58 45.38 4.40
3292 3555 0.112995 AGATTGTTGCCTTGGAGCCA 59.887 50.000 0.00 0.00 0.00 4.75
3336 3599 3.064207 TGCAAAGGATGTCGTAGTCAAC 58.936 45.455 0.00 0.00 0.00 3.18
3337 3600 3.064207 GTGCAAAGGATGTCGTAGTCAA 58.936 45.455 0.00 0.00 0.00 3.18
3338 3601 2.683968 GTGCAAAGGATGTCGTAGTCA 58.316 47.619 0.00 0.00 0.00 3.41
3339 3602 1.654105 CGTGCAAAGGATGTCGTAGTC 59.346 52.381 0.00 0.00 0.00 2.59
3340 3603 1.671850 CCGTGCAAAGGATGTCGTAGT 60.672 52.381 3.50 0.00 37.88 2.73
3341 3604 0.999406 CCGTGCAAAGGATGTCGTAG 59.001 55.000 3.50 0.00 37.88 3.51
3342 3605 1.017177 GCCGTGCAAAGGATGTCGTA 61.017 55.000 13.15 0.00 37.88 3.43
3343 3606 2.325082 GCCGTGCAAAGGATGTCGT 61.325 57.895 13.15 0.00 37.88 4.34
3344 3607 0.739462 TAGCCGTGCAAAGGATGTCG 60.739 55.000 13.15 0.00 37.88 4.35
3345 3608 0.727398 GTAGCCGTGCAAAGGATGTC 59.273 55.000 13.15 2.22 37.88 3.06
3346 3609 0.676782 GGTAGCCGTGCAAAGGATGT 60.677 55.000 13.15 0.26 37.88 3.06
3347 3610 0.392998 AGGTAGCCGTGCAAAGGATG 60.393 55.000 13.15 0.00 37.88 3.51
3348 3611 0.107654 GAGGTAGCCGTGCAAAGGAT 60.108 55.000 13.15 9.36 37.88 3.24
3349 3612 1.295423 GAGGTAGCCGTGCAAAGGA 59.705 57.895 13.15 0.00 37.88 3.36
3350 3613 2.100631 CGAGGTAGCCGTGCAAAGG 61.101 63.158 5.17 5.17 39.09 3.11
3351 3614 1.080093 TCGAGGTAGCCGTGCAAAG 60.080 57.895 0.00 0.00 0.00 2.77
3352 3615 1.373748 GTCGAGGTAGCCGTGCAAA 60.374 57.895 0.00 0.00 0.00 3.68
3353 3616 2.260434 GTCGAGGTAGCCGTGCAA 59.740 61.111 0.00 0.00 0.00 4.08
3354 3617 3.755628 GGTCGAGGTAGCCGTGCA 61.756 66.667 0.00 0.00 0.00 4.57
3355 3618 3.755628 TGGTCGAGGTAGCCGTGC 61.756 66.667 0.00 0.00 0.00 5.34
3356 3619 2.181021 GTGGTCGAGGTAGCCGTG 59.819 66.667 0.00 0.00 0.00 4.94
3357 3620 3.437795 CGTGGTCGAGGTAGCCGT 61.438 66.667 0.00 0.00 39.71 5.68
3358 3621 4.189188 CCGTGGTCGAGGTAGCCG 62.189 72.222 0.00 0.00 39.71 5.52
3359 3622 4.509737 GCCGTGGTCGAGGTAGCC 62.510 72.222 0.00 0.00 39.71 3.93
3360 3623 2.117156 TAGCCGTGGTCGAGGTAGC 61.117 63.158 0.00 0.00 39.71 3.58
3361 3624 1.028330 TGTAGCCGTGGTCGAGGTAG 61.028 60.000 0.00 0.00 39.71 3.18
3362 3625 1.002257 TGTAGCCGTGGTCGAGGTA 60.002 57.895 0.00 0.00 39.71 3.08
3363 3626 2.282674 TGTAGCCGTGGTCGAGGT 60.283 61.111 0.00 0.00 39.71 3.85
3364 3627 2.181021 GTGTAGCCGTGGTCGAGG 59.819 66.667 0.00 0.00 39.71 4.63
3365 3628 2.181021 GGTGTAGCCGTGGTCGAG 59.819 66.667 0.00 0.00 39.71 4.04
3366 3629 2.598099 TGGTGTAGCCGTGGTCGA 60.598 61.111 0.00 0.00 41.21 4.20
3367 3630 2.431942 GTGGTGTAGCCGTGGTCG 60.432 66.667 0.00 0.00 41.21 4.79
3368 3631 2.047560 GGTGGTGTAGCCGTGGTC 60.048 66.667 0.00 0.00 41.21 4.02
3369 3632 3.633116 GGGTGGTGTAGCCGTGGT 61.633 66.667 0.00 0.00 41.21 4.16
3375 3638 1.141234 GAGCGTAGGGTGGTGTAGC 59.859 63.158 0.00 0.00 0.00 3.58
3376 3639 0.739561 GAGAGCGTAGGGTGGTGTAG 59.260 60.000 0.00 0.00 0.00 2.74
3377 3640 1.028330 CGAGAGCGTAGGGTGGTGTA 61.028 60.000 0.00 0.00 0.00 2.90
3378 3641 2.341101 CGAGAGCGTAGGGTGGTGT 61.341 63.158 0.00 0.00 0.00 4.16
3379 3642 2.490217 CGAGAGCGTAGGGTGGTG 59.510 66.667 0.00 0.00 0.00 4.17
3380 3643 2.754658 CCGAGAGCGTAGGGTGGT 60.755 66.667 0.00 0.00 35.23 4.16
3381 3644 4.208686 GCCGAGAGCGTAGGGTGG 62.209 72.222 0.00 0.00 35.23 4.61
3390 3653 0.756903 TTATTGGGGTAGCCGAGAGC 59.243 55.000 4.56 0.00 44.25 4.09
3391 3654 2.289694 CCATTATTGGGGTAGCCGAGAG 60.290 54.545 4.56 0.00 39.56 3.20
3392 3655 1.697432 CCATTATTGGGGTAGCCGAGA 59.303 52.381 4.56 0.00 39.56 4.04
3393 3656 1.882352 GCCATTATTGGGGTAGCCGAG 60.882 57.143 4.56 0.00 43.84 4.63
3394 3657 0.109723 GCCATTATTGGGGTAGCCGA 59.890 55.000 4.56 0.00 43.84 5.54
3395 3658 0.179004 TGCCATTATTGGGGTAGCCG 60.179 55.000 4.56 0.00 43.84 5.52
3396 3659 1.328279 GTGCCATTATTGGGGTAGCC 58.672 55.000 1.07 1.07 43.84 3.93
3397 3660 2.065899 TGTGCCATTATTGGGGTAGC 57.934 50.000 5.82 0.00 43.84 3.58
3398 3661 4.141959 CCTTTTGTGCCATTATTGGGGTAG 60.142 45.833 5.82 0.00 43.84 3.18
3399 3662 3.772025 CCTTTTGTGCCATTATTGGGGTA 59.228 43.478 5.82 0.00 43.84 3.69
3400 3663 2.571202 CCTTTTGTGCCATTATTGGGGT 59.429 45.455 5.82 0.00 43.84 4.95
3401 3664 2.571202 ACCTTTTGTGCCATTATTGGGG 59.429 45.455 5.82 0.00 43.84 4.96
3402 3665 3.979101 ACCTTTTGTGCCATTATTGGG 57.021 42.857 5.82 0.00 43.84 4.12
3403 3666 5.748152 CGATAACCTTTTGTGCCATTATTGG 59.252 40.000 0.00 0.00 46.66 3.16
3404 3667 5.231991 GCGATAACCTTTTGTGCCATTATTG 59.768 40.000 0.00 0.00 0.00 1.90
3405 3668 5.105554 TGCGATAACCTTTTGTGCCATTATT 60.106 36.000 0.00 0.00 0.00 1.40
3406 3669 4.400884 TGCGATAACCTTTTGTGCCATTAT 59.599 37.500 0.00 0.00 0.00 1.28
3407 3670 3.759086 TGCGATAACCTTTTGTGCCATTA 59.241 39.130 0.00 0.00 0.00 1.90
3408 3671 2.560542 TGCGATAACCTTTTGTGCCATT 59.439 40.909 0.00 0.00 0.00 3.16
3409 3672 2.166829 TGCGATAACCTTTTGTGCCAT 58.833 42.857 0.00 0.00 0.00 4.40
3410 3673 1.610363 TGCGATAACCTTTTGTGCCA 58.390 45.000 0.00 0.00 0.00 4.92
3411 3674 2.939460 ATGCGATAACCTTTTGTGCC 57.061 45.000 0.00 0.00 0.00 5.01
3412 3675 4.485163 AGAAATGCGATAACCTTTTGTGC 58.515 39.130 0.00 0.00 0.00 4.57
3413 3676 6.148948 TCAAGAAATGCGATAACCTTTTGTG 58.851 36.000 0.00 0.00 0.00 3.33
3414 3677 6.325919 TCAAGAAATGCGATAACCTTTTGT 57.674 33.333 0.00 0.00 0.00 2.83
3415 3678 5.287035 GCTCAAGAAATGCGATAACCTTTTG 59.713 40.000 0.00 0.00 0.00 2.44
3416 3679 5.048083 TGCTCAAGAAATGCGATAACCTTTT 60.048 36.000 0.00 0.00 0.00 2.27
3417 3680 4.458989 TGCTCAAGAAATGCGATAACCTTT 59.541 37.500 0.00 0.00 0.00 3.11
3418 3681 4.009675 TGCTCAAGAAATGCGATAACCTT 58.990 39.130 0.00 0.00 0.00 3.50
3419 3682 3.609853 TGCTCAAGAAATGCGATAACCT 58.390 40.909 0.00 0.00 0.00 3.50
3420 3683 4.098416 GTTGCTCAAGAAATGCGATAACC 58.902 43.478 0.00 0.00 0.00 2.85
3421 3684 4.098416 GGTTGCTCAAGAAATGCGATAAC 58.902 43.478 0.00 0.00 0.00 1.89
3422 3685 4.009675 AGGTTGCTCAAGAAATGCGATAA 58.990 39.130 0.00 0.00 0.00 1.75
3423 3686 3.609853 AGGTTGCTCAAGAAATGCGATA 58.390 40.909 0.00 0.00 0.00 2.92
3424 3687 2.440409 AGGTTGCTCAAGAAATGCGAT 58.560 42.857 0.00 0.00 0.00 4.58
3425 3688 1.896220 AGGTTGCTCAAGAAATGCGA 58.104 45.000 0.00 0.00 0.00 5.10
3426 3689 2.287788 ACAAGGTTGCTCAAGAAATGCG 60.288 45.455 0.00 0.00 0.00 4.73
3427 3690 3.375782 ACAAGGTTGCTCAAGAAATGC 57.624 42.857 0.00 0.00 0.00 3.56
3428 3691 5.947228 TCTACAAGGTTGCTCAAGAAATG 57.053 39.130 0.00 0.00 0.00 2.32
3429 3692 7.309438 GGAAATCTACAAGGTTGCTCAAGAAAT 60.309 37.037 0.00 0.00 0.00 2.17
3430 3693 6.016276 GGAAATCTACAAGGTTGCTCAAGAAA 60.016 38.462 0.00 0.00 0.00 2.52
3431 3694 5.473504 GGAAATCTACAAGGTTGCTCAAGAA 59.526 40.000 0.00 0.00 0.00 2.52
3432 3695 5.003804 GGAAATCTACAAGGTTGCTCAAGA 58.996 41.667 0.00 0.00 0.00 3.02
3433 3696 4.761739 TGGAAATCTACAAGGTTGCTCAAG 59.238 41.667 0.00 0.00 0.00 3.02
3434 3697 4.518970 GTGGAAATCTACAAGGTTGCTCAA 59.481 41.667 0.00 0.00 0.00 3.02
3435 3698 4.072131 GTGGAAATCTACAAGGTTGCTCA 58.928 43.478 0.00 0.00 0.00 4.26
3436 3699 3.440522 GGTGGAAATCTACAAGGTTGCTC 59.559 47.826 0.00 0.00 0.00 4.26
3437 3700 3.421844 GGTGGAAATCTACAAGGTTGCT 58.578 45.455 0.00 0.00 0.00 3.91
3438 3701 2.492088 GGGTGGAAATCTACAAGGTTGC 59.508 50.000 0.00 0.00 0.00 4.17
3439 3702 4.034285 AGGGTGGAAATCTACAAGGTTG 57.966 45.455 0.00 0.00 0.00 3.77
3440 3703 4.324331 GCTAGGGTGGAAATCTACAAGGTT 60.324 45.833 0.00 0.00 0.00 3.50
3441 3704 3.200165 GCTAGGGTGGAAATCTACAAGGT 59.800 47.826 0.00 0.00 0.00 3.50
3442 3705 3.433740 GGCTAGGGTGGAAATCTACAAGG 60.434 52.174 0.00 0.00 0.00 3.61
3443 3706 3.199946 TGGCTAGGGTGGAAATCTACAAG 59.800 47.826 0.00 0.00 0.00 3.16
3444 3707 3.054655 GTGGCTAGGGTGGAAATCTACAA 60.055 47.826 0.00 0.00 0.00 2.41
3445 3708 2.504175 GTGGCTAGGGTGGAAATCTACA 59.496 50.000 0.00 0.00 0.00 2.74
3446 3709 2.483188 CGTGGCTAGGGTGGAAATCTAC 60.483 54.545 0.00 0.00 0.00 2.59
3447 3710 1.760613 CGTGGCTAGGGTGGAAATCTA 59.239 52.381 0.00 0.00 0.00 1.98
3448 3711 0.541863 CGTGGCTAGGGTGGAAATCT 59.458 55.000 0.00 0.00 0.00 2.40
3449 3712 0.539986 TCGTGGCTAGGGTGGAAATC 59.460 55.000 0.00 0.00 0.00 2.17
3450 3713 0.252197 GTCGTGGCTAGGGTGGAAAT 59.748 55.000 0.00 0.00 0.00 2.17
3451 3714 0.834687 AGTCGTGGCTAGGGTGGAAA 60.835 55.000 0.00 0.00 0.00 3.13
3452 3715 0.834687 AAGTCGTGGCTAGGGTGGAA 60.835 55.000 0.00 0.00 0.00 3.53
3453 3716 0.834687 AAAGTCGTGGCTAGGGTGGA 60.835 55.000 0.00 0.00 0.00 4.02
3454 3717 0.391263 GAAAGTCGTGGCTAGGGTGG 60.391 60.000 0.00 0.00 0.00 4.61
3455 3718 0.736325 CGAAAGTCGTGGCTAGGGTG 60.736 60.000 0.00 0.00 34.72 4.61
3456 3719 1.590147 CGAAAGTCGTGGCTAGGGT 59.410 57.895 0.00 0.00 34.72 4.34
3457 3720 1.810030 GCGAAAGTCGTGGCTAGGG 60.810 63.158 0.00 0.00 42.81 3.53
3458 3721 2.158959 CGCGAAAGTCGTGGCTAGG 61.159 63.158 0.00 0.00 45.61 3.02
3459 3722 3.374330 CGCGAAAGTCGTGGCTAG 58.626 61.111 0.00 0.00 45.61 3.42
3465 3728 1.742900 CGATGCATCGCGAAAGTCGT 61.743 55.000 33.70 6.82 43.84 4.34
3466 3729 1.084666 CGATGCATCGCGAAAGTCG 60.085 57.895 33.70 16.73 43.84 4.18
3467 3730 4.860150 CGATGCATCGCGAAAGTC 57.140 55.556 33.70 8.47 43.84 3.01
3476 3739 0.029834 GTGGCAATGGTCGATGCATC 59.970 55.000 17.10 17.10 44.32 3.91
3477 3740 0.394762 AGTGGCAATGGTCGATGCAT 60.395 50.000 10.63 0.00 44.32 3.96
3478 3741 0.251634 TAGTGGCAATGGTCGATGCA 59.748 50.000 10.63 0.00 44.32 3.96
3479 3742 1.265095 CATAGTGGCAATGGTCGATGC 59.735 52.381 0.00 0.00 41.82 3.91
3480 3743 2.288729 CACATAGTGGCAATGGTCGATG 59.711 50.000 0.00 0.00 0.00 3.84
3481 3744 2.564771 CACATAGTGGCAATGGTCGAT 58.435 47.619 0.00 0.00 0.00 3.59
3482 3745 2.022764 CACATAGTGGCAATGGTCGA 57.977 50.000 0.00 0.00 0.00 4.20
3501 3764 0.250338 GGTAAGCCGATGGACATCCC 60.250 60.000 6.71 0.00 34.40 3.85
3502 3765 0.759346 AGGTAAGCCGATGGACATCC 59.241 55.000 6.71 0.00 40.50 3.51
3503 3766 2.484889 GAAGGTAAGCCGATGGACATC 58.515 52.381 2.22 2.22 40.50 3.06
3504 3767 1.202533 CGAAGGTAAGCCGATGGACAT 60.203 52.381 0.00 0.00 40.50 3.06
3505 3768 0.174845 CGAAGGTAAGCCGATGGACA 59.825 55.000 0.00 0.00 40.50 4.02
3506 3769 2.973420 CGAAGGTAAGCCGATGGAC 58.027 57.895 0.00 0.00 40.50 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.